BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>psy14327
ILNIIILILYRTGYGGQFLGVGGTWNLNEEKNPDVEIIASGVFVGYFVYTTVILISYGFG
TTQQNETLVDIIMNFIAIFLWIAVGGIALHYWIGYQNEHHYQQVTSERGIGITLGILCIF
SGALYLIDTVLSFIHFIKDL

High Scoring Gene Products

Symbol, full name Information P value
Ssk
Snakeskin 		protein from Drosophila melanogaster 1.7e-41

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy14327
        (140 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

FB|FBgn0036945 - symbol:Ssk "Snakeskin" species:7227 "Dro...   440  1.7e-41   1


>FB|FBgn0036945 [details] [associations]
            symbol:Ssk "Snakeskin" species:7227 "Drosophila melanogaster"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0007496 "anterior
            midgut development" evidence=IMP] [GO:0019991 "septate junction
            assembly" evidence=IMP] [GO:0005920 "smooth septate junction"
            evidence=IDA] [GO:0005887 "integral to plasma membrane"
            evidence=IDA] [GO:0061028 "establishment of endothelial barrier"
            evidence=IMP] [GO:0060576 "intestinal epithelial cell development"
            evidence=IMP] EMBL:AE014296 GO:GO:0005887 GO:GO:0019991
            GO:GO:0060576 GO:GO:0007496 GO:GO:0061028 EMBL:AY052037
            EMBL:AM294673 EMBL:AM294674 EMBL:AM294675 EMBL:AM294676
            EMBL:AM294677 EMBL:AM294678 EMBL:AM294679 EMBL:AM294680
            EMBL:AM294681 EMBL:AM294682 EMBL:AM294683 EMBL:AM294684
            EMBL:FM245818 EMBL:FM245819 EMBL:FM245820 EMBL:FM245821
            EMBL:FM245822 EMBL:FM245823 EMBL:FM245824 EMBL:FM245825
            EMBL:FM245826 EMBL:FM245827 EMBL:FM245828 EMBL:FM245829
            RefSeq:NP_649184.1 RefSeq:NP_730487.1 UniGene:Dm.4400
            MINT:MINT-912212 EnsemblMetazoa:FBtr0074820
            EnsemblMetazoa:FBtr0074821 GeneID:40207 KEGG:dme:Dmel_CG6981
            UCSC:CG6981-RA FlyBase:FBgn0036945 eggNOG:NOG41444
            InParanoid:Q9VW87 OMA:GTWNLNE OrthoDB:EOG4K0P4R GenomeRNAi:40207
            NextBio:817571 GO:GO:0005920 Uniprot:Q9VW87
        Length = 162

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 77/138 (55%), Positives = 102/138 (73%)

Query:     1 ILNIIILILYRTGYGGQFLGVGGTWNLNEEKNPDVEIIASGVFVGYFVYTTVILISYGFG 60
             I+N++I+ LYR G GG+FLG+GGTWNLNEEK+ D EI+ASGV VG+ +YT    I++ FG
Sbjct:    18 IINLVIIFLYRWGDGGEFLGIGGTWNLNEEKSADAEIVASGVMVGFLIYTGCHTIAFAFG 77

Query:    61 TTQQNETLVDIIMNFIAIFLWIAVGGIALHYWIGYQNEHHYQQVTSERGIGITLGILCIF 120
             TT+    L D IMN +   +WIAVGG+ALHYW GY ++  +  V SER +GI +G LC+ 
Sbjct:    78 TTKHKGELCDTIMNVVGCIMWIAVGGVALHYWKGYMSDEGFLYVNSERQVGIAMGSLCVI 137

Query:   121 SGALYLIDTVLSFIHFIK 138
              GALYL+DTVL+ IH+ K
Sbjct:   138 EGALYLLDTVLACIHYSK 155


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.328   0.149   0.462    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      140       140   0.00091  102 3  11 22  0.37    31
                                                     30  0.46    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  551 (59 KB)
  Total size of DFA:  136 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:02
  No. of threads or processors used:  24
  Search cpu time:  12.98u 0.08s 13.06t   Elapsed:  00:00:14
  Total cpu time:  12.98u 0.08s 13.06t   Elapsed:  00:00:21
  Start:  Thu Aug 15 12:31:06 2013   End:  Thu Aug 15 12:31:27 2013

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