RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14327
         (140 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 24/105 (22%), Positives = 34/105 (32%), Gaps = 24/105 (22%)

Query: 25  WNLNEEKNPDVEIIAS--------GV--FVGYFV------YTTVILISYGFGTTQQNETL 68
           W  N    PD + + S        GV     Y V      +T   L SY  G T  ++ L
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277

Query: 69  VDIIMNFIAI------FLWIAVGGIALHYWIGYQNEHHYQQVTSE 107
           V      IA       F       I + ++IG +    Y   +  
Sbjct: 278 V--TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP 320



 Score = 28.9 bits (64), Expect = 0.61
 Identities = 26/156 (16%), Positives = 47/156 (30%), Gaps = 59/156 (37%)

Query: 1    ILNIII-----LILYRTGYGGQFLGVGGTWNLNEEKNPDVEIIASGVFVGYFVYTTVILI 55
            IL+I+I     L ++  G  G+ +    +  +  E   D ++    +F     ++T    
Sbjct: 1661 ILDIVINNPVNLTIHFGGEKGKRIRENYS-AMIFETIVDGKLKTEKIFKEINEHST---- 1715

Query: 56   SYGFG--------T--TQQNETLVDIIMNFIAIFLWIAVGGIALHYWIGYQNEHHYQQVT 105
            SY F         T  TQ             A+ L       A              +  
Sbjct: 1716 SYTFRSEKGLLSATQFTQ------------PALTLM----EKAAF------------EDL 1747

Query: 106  SERGI--------GITLG---ILCIFSGALYLIDTV 130
              +G+        G +LG    L   +  + +   V
Sbjct: 1748 KSKGLIPADATFAGHSLGEYAALASLADVMSIESLV 1783


>3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase,
           golgi apparatus, membrane, signal-anchor, transmembrane;
           HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1
           b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A*
           3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A*
           1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A*
           2alw_A* 2f18_A* ...
          Length = 1045

 Score = 26.0 bits (56), Expect = 6.5
 Identities = 7/23 (30%), Positives = 10/23 (43%)

Query: 16  GQFLGVGGTWNLNEEKNPDVEII 38
           GQ   V G W + +E N     +
Sbjct: 156 GQLEFVTGGWVMPDEANSHWRNV 178


>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding
           replication protein A(RPA), single stranded DNA-binding
           protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo
           sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
          Length = 246

 Score = 25.2 bits (54), Expect = 9.0
 Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 5/87 (5%)

Query: 28  NEEKNPDVEIIASGVFVGYFVYTTVILISYGFGTTQQNETLVDIIMNFIAIFLWIAVGGI 87
           N+ K+  V+II           T + + S      ++N  L+D     +   LW   G  
Sbjct: 134 NKSKDSLVDIIGICKSYED--ATKITVRSNNREVAKRNIYLMDTSGKVVTATLW---GED 188

Query: 88  ALHYWIGYQNEHHYQQVTSERGIGITL 114
           A  +    Q     +        G +L
Sbjct: 189 ADKFDGSRQPVLAIKGARVSDFGGRSL 215


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.328    0.149    0.462 

Gapped
Lambda     K      H
   0.267   0.0792    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,333,130
Number of extensions: 135204
Number of successful extensions: 315
Number of sequences better than 10.0: 1
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 13
Length of query: 140
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 56
Effective length of database: 4,356,429
Effective search space: 243960024
Effective search space used: 243960024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (23.7 bits)