RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14327
         (140 letters)



>d2r8oa3 c.48.1.1 (A:528-663) Transketolase (TK), C-domain
           {Escherichia coli [TaxId: 562]}
          Length = 136

 Score = 25.6 bits (55), Expect = 1.6
 Identities = 17/93 (18%), Positives = 26/93 (27%), Gaps = 10/93 (10%)

Query: 22  GGTWNLNEEKNPDVEIIASGVFVGYFVYTTVILISYGFGTTQQNETLVDIIMNFIAIFLW 81
           GG    +    P++  IA+G  V   V     L + G      +    D      A +  
Sbjct: 12  GGYVLKDCAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRE 71

Query: 82  ----------IAVGGIALHYWIGYQNEHHYQQV 104
                     +AV      YW  Y   +     
Sbjct: 72  SVLPKAVTARVAVEAGIADYWYKYVGLNGAIVG 104


>d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 146

 Score = 23.9 bits (51), Expect = 7.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 27 LNEEKNPDVEIIASGVFV 44
          L +  NPD+ ++A+G  V
Sbjct: 15 LQDVANPDIILVATGSEV 32


>d1r9ja3 c.48.1.1 (A:527-669) Transketolase (TK), C-domain
          {Leishmania mexicana mexicana [TaxId: 44270]}
          Length = 143

 Score = 23.5 bits (50), Expect = 9.7
 Identities = 7/31 (22%), Positives = 12/31 (38%)

Query: 27 LNEEKNPDVEIIASGVFVGYFVYTTVILISY 57
          + +  +  + I+ASG  V   V     L   
Sbjct: 13 VVDVPDLQLVIVASGSEVSLAVDAAKALSGE 43


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.149    0.462 

Gapped
Lambda     K      H
   0.267   0.0720    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 567,363
Number of extensions: 25189
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 7
Length of query: 140
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 63
Effective length of database: 1,350,386
Effective search space: 85074318
Effective search space used: 85074318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (22.3 bits)