BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14331
(265 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZW9|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZW9|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
Length = 695
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 18/114 (15%)
Query: 150 KIVCKDTPPSRSGHRMIALKKH--LVVFGGFHDNLREAKY--YNDVHIFDLETYAWKKIE 205
++ + P +R H + ++ L++ GG R+A + +D IFD++T W I+
Sbjct: 430 EVSSSEVPVARMCHTFTTISRNNQLLLIGG-----RKAPHQGLSDNWIFDMKTREWSMIK 484
Query: 206 PLGAGPAPRSGCQMAATPDGKILISGGYSK------QSVKKDVDKGIVHTDTFL 253
L S C + PDG +LI GG ++ +V +++ K + D F
Sbjct: 485 SLSHTRFRHSACSL---PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFF 535
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 61/149 (40%), Gaps = 24/149 (16%)
Query: 69 FYDGQKFVFGSP-----KALD-HLILMNLFVSAPGAPPPRCSHQMVALSADKGQLWMFGG 122
F+D ++ G K +D + ++ + + S G P PR S +A A +G+++ GG
Sbjct: 53 FWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDS---LAACAAEGKIYTSGG 109
Query: 123 EFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPS----RSGHRMIALKKHLVVFGGF 178
S S + ++ + + W T PS R H M+ + V GG
Sbjct: 110 --SEVGNSALYLFE---CYDTRTESWH------TKPSMLTQRCSHGMVEANGLIYVCGGS 158
Query: 179 HDNLREAKYYNDVHIFDLETYAWKKIEPL 207
N + N ++D T W ++ P+
Sbjct: 159 LGNNVSGRVLNSCEVYDPATETWTELCPM 187
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/199 (19%), Positives = 78/199 (39%), Gaps = 42/199 (21%)
Query: 59 KDQLILFGGEFYD---GQKFVFGSPKALDHLILMNLFVSAPGAPPPRCSHQMVALSADKG 115
++Q+ + GG FY+ + + DHL + ++ P P PRC + L
Sbjct: 45 ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLD--SEWLGMPPLPSPRC---LFGLGEALN 99
Query: 116 QLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKD-----------TPPSRSGHR 164
+++ GG KD GE+ + ++C D P GH
Sbjct: 100 SIYVVGG----------REIKD------GERCLDSVMCYDRLSFKWGESDPLPYVVYGHT 143
Query: 165 MIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPD 224
+++ + V GG + K N + ++D + + WK++ P+ + A D
Sbjct: 144 VLSHMDLVYVIGG---KGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFG----ATVHD 196
Query: 225 GKILISGGYSKQSVKKDVD 243
G+I+++ G + + +
Sbjct: 197 GRIIVAAGVTDTGLTSSAE 215
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
Query: 64 LFGGEFYDGQKFVFG-------SPKALDHLILMNLFVSAPGAPPPRCSHQMVALSADKGQ 116
LFG +DG+ V + A + I N + P R S +V+L G
Sbjct: 189 LFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLV---GT 245
Query: 117 LWMFGGEFSSASESQF---HHYKDLWVFRMGEKKWEKIV 152
L+ GG + +ES D+W + EKKWE ++
Sbjct: 246 LYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVL 284
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 47/125 (37%), Gaps = 10/125 (8%)
Query: 100 PPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPS 159
P + M ++ KG++ + GG + F + KWE V + P
Sbjct: 192 PMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVE------AFDLKTNKWE--VMTEFPQE 243
Query: 160 RSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPR--SGC 217
RS +++L L GGF E+K + + D+ Y K E G R SG
Sbjct: 244 RSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGMLKEIRYASGA 303
Query: 218 QMAAT 222
AT
Sbjct: 304 SCLAT 308
>pdb|2UVK|A Chain A, Structure Of Yjht
pdb|2UVK|B Chain B, Structure Of Yjht
Length = 357
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 145 EKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLRE-AKYYNDVHIFDLETYAWKK 203
+KKW + P R + +L VFGG N + +NDVH ++ +T +W K
Sbjct: 42 DKKWTALAAFPGGP-RDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVK 100
Query: 204 IEPLGAGPAPRSGCQMAATPDGKILISGGYSKQ 236
+ P +G + +GK ++GG ++
Sbjct: 101 LXS--HAPXGXAG-HVTFVHNGKAYVTGGVNQN 130
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 160 RSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQM 219
RSG + L H+ V GGF + + V +++ T +W + + PR C +
Sbjct: 197 RSGAGVALLNDHIYVVGGFDGT----AHLSSVEAYNIRTDSWTTVTSM---TTPR--CYV 247
Query: 220 AATP-DGKILISGGYSKQSVKKDVD 243
AT G++ GY S+ ++
Sbjct: 248 GATVLRGRLYAIAGYDGNSLLSSIE 272
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 55/158 (34%), Gaps = 16/158 (10%)
Query: 108 VALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIA 167
+ + G ++ GG S Y+ +W + T R G +
Sbjct: 108 IGVGVIDGHIYAVGGSHGCIHHSSVERYEPE------RDEWHLVAPMLT--RRIGVGVAV 159
Query: 168 LKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKI 227
L + L GGF R N + E W+ I P+ RSG + + I
Sbjct: 160 LNRLLYAVGGFDGTNR----LNSAECYYPERNEWRMITPMNT---IRSGAGVCVLHN-CI 211
Query: 228 LISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTLRSCL 265
+GGY Q V++ V T+T+ + RS L
Sbjct: 212 YAAGGYDGQDQLNSVERYDVETETWTFVAPMRHHRSAL 249
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 41/106 (38%), Gaps = 8/106 (7%)
Query: 160 RSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQM 219
R G + L + L GGF R N + E W+ I P+ RSG +
Sbjct: 153 RIGVGVAVLNRLLYAVGGFDGTNR----LNSAECYYPERNEWRMITPMNT---IRSGAGV 205
Query: 220 AATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTLRSCL 265
+ I +GGY Q V++ V T+T+ + RS L
Sbjct: 206 CVLHN-CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMRHHRSAL 250
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 40/106 (37%), Gaps = 8/106 (7%)
Query: 160 RSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQM 219
R G + L + L GGF R N + E W+ I A RSG +
Sbjct: 159 RIGVGVAVLNRLLYAVGGFDGTNR----LNSAECYYPERNEWRXIT---AXNTIRSGAGV 211
Query: 220 AATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTLRSCL 265
+ I +GGY Q V++ V T+T+ K RS L
Sbjct: 212 CVLHN-CIYAAGGYDGQDQLNSVERYDVETETWTFVAPXKHRRSAL 256
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 8/106 (7%)
Query: 160 RSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQM 219
R G + L + L GGF R N + E W+ I + RSG +
Sbjct: 160 RIGVGVAVLNRLLYAVGGFDGTNR----LNSAECYYPERNEWRMITAMNT---IRSGAGV 212
Query: 220 AATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTLRSCL 265
+ I +GGY Q V++ V T+T+ K RS L
Sbjct: 213 CVLHN-CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSAL 257
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 8/106 (7%)
Query: 160 RSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQM 219
R G + L + L GGF R N + E W+ I + RSG +
Sbjct: 159 RIGVGVAVLNRLLYAVGGFDGTNR----LNSAECYYPERNEWRMITAMNT---IRSGAGV 211
Query: 220 AATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTLRSCL 265
+ I +GGY Q V++ V T+T+ K RS L
Sbjct: 212 CVLHN-CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSAL 256
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,147,810
Number of Sequences: 62578
Number of extensions: 385394
Number of successful extensions: 882
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 879
Number of HSP's gapped (non-prelim): 13
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)