RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14331
(265 letters)
>gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein.
Length = 470
Score = 65.0 bits (158), Expect = 5e-12
Identities = 55/191 (28%), Positives = 82/191 (42%), Gaps = 32/191 (16%)
Query: 72 GQKFVFGSPKALDHLILMNLFVSAPGAPP----------------PRCSHQMVALSADKG 115
G K V ++ D L + ++S P P RCSH + +
Sbjct: 120 GGKIVGFHGRSTDVLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVG---N 176
Query: 116 QLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRS--GHRMIALKKHLV 173
+++ FGGEF+ H L+VF + + W P S G RM+++ L
Sbjct: 177 KIYSFGGEFTPNQPIDKH----LYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLY 232
Query: 174 VFGGFHDNLREA-KYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGG 232
VFGG R+A + YN + FD T WK + P+ GP PRS MAA + + + GG
Sbjct: 233 VFGG-----RDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEE-NVYVFGG 286
Query: 233 YSKQSVKKDVD 243
S + K +D
Sbjct: 287 VSATARLKTLD 297
Score = 41.5 bits (97), Expect = 2e-04
Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 24/168 (14%)
Query: 99 PPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCK---D 155
P PR H M +AD+ +++FGG ++A K L + + +KKW C D
Sbjct: 266 PTPRSFHSM---AADEENVYVFGGVSATA------RLKTLDSYNIVDKKW--FHCSTPGD 314
Query: 156 TPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRS 215
+ R G + ++ + V GF+ +DVH +D W ++E G P+ RS
Sbjct: 315 SFSIRGGAGLEVVQGKVWVVYGFN-----GCEVDDVHYYDPVQDKWTQVETFGVRPSERS 369
Query: 216 GCQMAATPDGK-ILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTLR 262
AA GK I+I GG V G + TF L D++TL+
Sbjct: 370 VFASAAV--GKHIVIFGGEIAMDPLAHVGPGQLTDGTFAL--DTETLQ 413
>gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein.
Length = 341
Score = 59.6 bits (144), Expect = 3e-10
Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 16/146 (10%)
Query: 99 PPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPP 158
P PRCSH + A+ DK L+ FGGE H KDL+VF W P
Sbjct: 20 PGPRCSHGI-AVVGDK--LYSFGGELK----PNEHIDKDLYVFDFNTHTWSIAPANGDVP 72
Query: 159 SRS--GHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLG--AGPAPR 214
S G RM+A+ L +FGG + + ++D + +D W + L GP R
Sbjct: 73 RISCLGVRMVAVGTKLYIFGGRDEK----REFSDFYSYDTVKNEWTFLTKLDEEGGPEAR 128
Query: 215 SGCQMAATPDGKILISGGYSKQSVKK 240
+ MA+ + + + GG SK + K
Sbjct: 129 TFHSMASD-ENHVYVFGGVSKGGLMK 153
Score = 40.4 bits (94), Expect = 6e-04
Identities = 43/189 (22%), Positives = 74/189 (39%), Gaps = 24/189 (12%)
Query: 60 DQLILFGGEF-----YDGQKFVFGSPKALDHLILMNLFVSAPGAPPPRCSHQMVALSADK 114
D+L FGGE D +VF ++ PR S V + A
Sbjct: 33 DKLYSFGGELKPNEHIDKDLYVF-------DFNTHTWSIAPANGDVPRISCLGVRMVAVG 85
Query: 115 GQLWMFGGEFSSASESQFHHY---KDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKH 171
+L++FGG S F+ Y K+ W F K+ + P +R+ H M + + H
Sbjct: 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTF------LTKLDEEGGPEARTFHSMASDENH 139
Query: 172 LVVFGGFHDN--LREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILI 229
+ VFGG ++ + + + +++ W ++ G R G A GKI +
Sbjct: 140 VYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVV-QGKIWV 198
Query: 230 SGGYSKQSV 238
G++ +
Sbjct: 199 VYGFATSIL 207
Score = 36.5 bits (84), Expect = 0.009
Identities = 40/171 (23%), Positives = 73/171 (42%), Gaps = 13/171 (7%)
Query: 97 GAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIV-CKD 155
G P R H M ++D+ +++FGG ++ + + + + KW ++ +
Sbjct: 123 GGPEARTFHSM---ASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGE 179
Query: 156 TPPSRSGHRMIALKKHLVVFGGFHDNL----REAKYYNDVHIFDLETYAWKKIEPLGAGP 211
R G ++ + V GF ++ + N V FD + W ++E GA P
Sbjct: 180 NFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKP 239
Query: 212 APRSGCQMAATPDGK-ILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTL 261
+ RS A GK I+I GG +K + G + + + L D++TL
Sbjct: 240 SARSVFAHAVV--GKYIIIFGGEVWPDLKGHLGPGTLSNEGYAL--DTETL 286
Score = 35.7 bits (82), Expect = 0.017
Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 11/130 (8%)
Query: 114 KGQLWMFGGEFSSASESQFHHYKD--LWVFRMGEKKWEKIVCKDTPPS-RSGHRMIALKK 170
+G++W+ G +S Y+ + F KW ++ PS RS + K
Sbjct: 193 QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGK 252
Query: 171 HLVVFGG-----FHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRS-GCQMAATPD 224
++++FGG +L N+ + D ET W+K+ G PR AT
Sbjct: 253 YIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVY 312
Query: 225 GK--ILISGG 232
GK +L+ GG
Sbjct: 313 GKNGLLMHGG 322
>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain.
Length = 48
Score = 43.0 bits (102), Expect = 3e-06
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 169 KKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAA 221
+ VFGG D ND+ ++DL+T W+K+ G P PR+G
Sbjct: 1 GGKIYVFGGLGDG---GTRLNDLWVYDLDTNTWEKL---GDLPGPRAGHAATV 47
Score = 39.6 bits (93), Expect = 6e-05
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 114 KGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL 168
G++++FGG + DLWV+ + WEK+ D P R+GH +
Sbjct: 1 GGKIYVFGGLGDGGT-----RLNDLWVYDLDTNTWEKL--GDLPGPRAGHAATVI 48
Score = 27.3 bits (61), Expect = 1.1
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 12/56 (21%)
Query: 59 KDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAPGAPPPRCSHQMVAL 110
++ +FGG L+ L + +L + P PR H +
Sbjct: 1 GGKIYVFGGLG--------DGGTRLNDLWVYDLDTNTWEKLGDLPGPRAGHAATVI 48
>gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif.
Length = 50
Score = 42.4 bits (100), Expect = 5e-06
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 6/55 (10%)
Query: 160 RSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPR 214
R+GH +++ + VFGG+ + +K N V ++D ET +W+K+ PL P PR
Sbjct: 2 RTGHSAVSVGGKIYVFGGYSNG---SKASNKVLVYDPETGSWEKLPPL---PTPR 50
>gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase;
Provisional.
Length = 376
Score = 46.5 bits (111), Expect = 6e-06
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 145 EKKWEKIVCKDTP-PSRSGHRMIALKKHLVVFGGFHDNLREAK--YYNDVHIFDLETYAW 201
K W KI P R + L VFGG E ++DV+ +D +T +W
Sbjct: 61 SKGWTKI--AAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSW 118
Query: 202 KKIEPLGAGPAPRS--GCQMAATPDGKILISGGYSKQ 236
+K+ +P G + +GK I+GG +K
Sbjct: 119 QKL----DTRSPVGLAGHVAVSLHNGKAYITGGVNKN 151
Score = 36.5 bits (85), Expect = 0.010
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 96 PGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKD 155
PG PR Q VA D G+L++FGG + SE + D++ + W+K+ +
Sbjct: 71 PG--GPR--EQAVAAFID-GKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTR- 124
Query: 156 TPPSRSGHRMIAL-KKHLVVFGGFHDNLREAKYYNDVH 192
+P +GH ++L + GG + N+ + Y+ D+
Sbjct: 125 SPVGLAGHVAVSLHNGKAYITGGVNKNIFD-GYFEDLA 161
>gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family. Members of
this protein family contain multiple copies of the
beta-propeller-forming Kelch repeat. All are full-length
homologs to YjhT of Escherichia coli, which has been
identified as a mutarotase for sialic acid. This protein
improves bacterial ability to obtain host sialic acid,
and thus serves as a virulence factor. Some bacteria
carry what appears to be a cyclically permuted homolog
of this protein.
Length = 346
Score = 46.2 bits (110), Expect = 8e-06
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 145 EKKWEKIVCKDTP-PSRSGHRMIALKKHLVVFGGF--HDNLREAKYYNDVHIFDLETYAW 201
K W+KI D P R+ A+ L VFGG ++ + ++DV+ +D + +W
Sbjct: 40 SKGWQKI--ADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSW 97
Query: 202 KKIE-PLGAGPAPRSGCQMAATPDGKILISGGYSK 235
+K++ G SG + +G+ +GG +K
Sbjct: 98 QKLDTRSPVGLLGASGFSLH---NGQAYFTGGVNK 129
Score = 33.1 bits (76), Expect = 0.13
Identities = 37/170 (21%), Positives = 60/170 (35%), Gaps = 45/170 (26%)
Query: 96 PGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKD 155
PG P +Q VA + D G+L++FGG + SE + D++ + + W+K+ D
Sbjct: 50 PGGP----RNQAVAAAID-GKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKL---D 101
Query: 156 TPPSRS--GHRMIALKK-HLVVFGGF---------------------HDNLREA------ 185
T G +L GG D L A
Sbjct: 102 TRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPP 161
Query: 186 ---KYYNDVHIFDLETYAWKKIEPLGAGP-APRSGCQMAATPDGKILISG 231
+ +V +D T W+ LG P +G + + +LI+G
Sbjct: 162 EDYFWNKNVLSYDPSTNQWRN---LGENPFLGTAGSAIVHKGNKLLLING 208
>gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif. The kelch motif was initially
discovered in Kelch. In this protein there are six
copies of the motif. It has been shown that the
Drosophila ring canal kelch protein is related to
Galactose Oxidase for which a structure has been solved.
The kelch motif forms a beta sheet. Several of these
sheets associate to form a beta propeller structure as
found in pfam00064, pfam00400 and pfam00415.
Length = 42
Score = 41.8 bits (99), Expect = 8e-06
Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 156 TPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLET 198
P R+ H + + + ++GG+ + +DV++ L
Sbjct: 1 LPVPRANHCAVVVGGEIYLYGGY--TSGNGQSSDDVYVLSLPG 41
>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif. The kelch motif was initially
discovered in Kelch. In this protein there are six
copies of the motif. It has been shown that the
Drosophila ring canal kelch protein is related to
Galactose Oxidase, for which a structure has been
solved. The kelch motif forms a beta sheet. Several of
these sheets associate to form a beta propeller
structure as found in pfam00064, pfam00400 and
pfam00415.
Length = 46
Score = 38.4 bits (90), Expect = 1e-04
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 160 RSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLG 208
RSG ++ L + V GG+ + + V ++D ET W K+ +
Sbjct: 2 RSGAGVVVLGGKIYVIGGYDGG----QSLSSVEVYDPETNTWSKLPSMP 46
>gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif. The kelch motif was initially
discovered in Kelch. In this protein there are six
copies of the motif. It has been shown that Drosophila
ring canal kelch protein is related to Galactose Oxidase
for which a structure has been solved. The kelch motif
forms a beta sheet. Several of these sheets associate to
form a beta propeller structure as found in pfam00064,
pfam00400 and pfam00415.
Length = 48
Score = 38.5 bits (90), Expect = 1e-04
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 159 SRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLG 208
R H + + L V GG + +D+ + D ET W ++ L
Sbjct: 1 PRYPHASVVVGGKLYVVGGSTGLGDLSS--SDLWVLDPETNVWTELPALP 48
Score = 27.3 bits (61), Expect = 1.2
Identities = 6/38 (15%), Positives = 13/38 (34%)
Query: 214 RSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDT 251
+ GK+ + GG + D ++ +T
Sbjct: 1 PRYPHASVVVGGKLYVVGGSTGLGDLSSSDLWVLDPET 38
>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain.
Length = 49
Score = 38.4 bits (90), Expect = 2e-04
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 101 PRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKI 151
PR H ++ G+L++FGGE S D+WVF + W ++
Sbjct: 1 PRAYHTSTSI--GDGRLYLFGGENEDGSV-----LSDVWVFDLSTNTWTRL 44
Score = 38.0 bits (89), Expect = 2e-04
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 160 RSGHRMIALKKH-LVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPL 207
R+ H ++ L +FGG +++ +DV +FDL T W ++ L
Sbjct: 2 RAYHTSTSIGDGRLYLFGGENED---GSVLSDVWVFDLSTNTWTRLPSL 47
Score = 33.4 bits (77), Expect = 0.008
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 213 PRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKT 260
PR+ + DG++ + GG + + G V +D ++ + T
Sbjct: 1 PRAYHTSTSIGDGRLYLFGGEN--------EDGSVLSDVWVFDLSTNT 40
>gnl|CDD|211835 TIGR03548, mutarot_permut, cyclically-permuted mutarotase family
protein. Members of this protein family show
essentially full-length homology, cyclically permuted,
to YjhT from Escherichia coli. YjhT was shown to act as
a mutarotase for sialic acid, and by this ability to be
able to act as a virulence factor. Members of the YjhT
family (TIGR03547) and this cyclically-permuted family
have multiple repeats of the beta-propeller-forming
Kelch repeat.
Length = 323
Score = 40.1 bits (94), Expect = 6e-04
Identities = 32/141 (22%), Positives = 59/141 (41%), Gaps = 20/141 (14%)
Query: 101 PRCSHQMVALSADK--GQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPP 158
P M SA G+L++ GG + ++F + F + ++WE++ D P
Sbjct: 108 PSLPFAMDNGSATYKDGKLYVGGGNANGKPSNKF------YCFNLETQEWEEL--PDFPG 159
Query: 159 S-RSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRS-- 215
+ R + L+ L VFGG + Y D + + +T W+K+ + P S
Sbjct: 160 APRVQPVCVKLQNELYVFGG-----GDNIAYTDGYKYSPKTGTWEKVADPLSDGEPISLL 214
Query: 216 -GCQMAATPDGKILISGGYSK 235
+A + +L GG++
Sbjct: 215 GAASIAIN-ESLLLCIGGFNY 234
>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional.
Length = 534
Score = 39.8 bits (93), Expect = 0.001
Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 17/128 (13%)
Query: 108 VALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIA 167
++ ++++ GG ++S S + + W GE KW + P R ++
Sbjct: 336 PGVTVFNNRIYVIGGIYNSISLNTV----ESWKP--GESKWREEPPLIFP--RYNPCVVN 387
Query: 168 LKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRS-GCQMAATPDGK 226
+ + V GG N + V F L T W K PL P GC A DGK
Sbjct: 388 VNNLIYVIGGISKN---DELLKTVECFSLNTNKWSKGSPL---PISHYGGC--AIYHDGK 439
Query: 227 ILISGGYS 234
I + GG S
Sbjct: 440 IYVIGGIS 447
>gnl|CDD|225597 COG3055, COG3055, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 381
Score = 39.3 bits (92), Expect = 0.001
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Query: 144 GEKKWEKIVCKDTP-PSRSGHRMIALKKHLVVFGGFHDNL-REAKYYNDVHIFDLETYAW 201
K W KI D P +R+ + L VFGG+ ++ + +ND + +D T +W
Sbjct: 68 PGKGWTKI--ADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSW 125
Query: 202 KKIEPLGAGPAPR--SGCQMAATPDGKILISGGYSK 235
K++ +P G + KI GG ++
Sbjct: 126 HKLDTR----SPTGLVGASTFSLNGTKIYFFGGVNQ 157
>gnl|CDD|215414 PLN02772, PLN02772, guanylate kinase.
Length = 398
Score = 33.3 bits (76), Expect = 0.10
Identities = 17/56 (30%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 174 VFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILI 229
V GG H+ V I D T W LG GP P G +IL+
Sbjct: 39 VIGGNHE---GNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILV 91
>gnl|CDD|171855 PRK13043, PRK13043, superantigen-like protein; Reviewed.
Length = 241
Score = 28.5 bits (63), Expect = 3.5
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 53 FLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL 91
FL + DK Q I+ G EFY G K V + K LD I L
Sbjct: 146 FLKYSDKQQTIIGGHEFYKGNKPVL-TLKELDFRIRQTL 183
>gnl|CDD|223740 COG0668, MscS, Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane].
Length = 316
Score = 27.6 bits (61), Expect = 6.4
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 7 RHAMSWTIMFNEDIEKIVRDIEAEEKRKNKVIEKVVPEP 45
R + + ++ D+EK I E + + K+ PEP
Sbjct: 204 RVEVKVGVAYDSDLEK-ALKILKEVLEELPEVLKIEPEP 241
>gnl|CDD|226593 COG4108, PrfC, Peptide chain release factor RF-3 [Translation,
ribosomal structure and biogenesis].
Length = 528
Score = 27.6 bits (62), Expect = 8.6
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 6/31 (19%)
Query: 44 EPTRRANFSFLAHPD------KDQLILFGGE 68
E RR F+ ++HPD ++L+LFGG
Sbjct: 8 EVARRRTFAIISHPDAGKTTLTEKLLLFGGA 38
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.434
Gapped
Lambda K H
0.267 0.0663 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,122,424
Number of extensions: 1355940
Number of successful extensions: 1378
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1358
Number of HSP's successfully gapped: 33
Length of query: 265
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 170
Effective length of database: 6,723,972
Effective search space: 1143075240
Effective search space used: 1143075240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.3 bits)