RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14331
(265 letters)
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A
{Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Length = 695
Score = 105 bits (262), Expect = 8e-26
Identities = 34/211 (16%), Positives = 71/211 (33%), Gaps = 23/211 (10%)
Query: 57 PDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNLFVSAPGAPPPRCSHQMVALSADKGQ 116
+ + GG + D + + N+ VS+ P R H +S + Q
Sbjct: 395 VAGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRN-NQ 453
Query: 117 LWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKH-LVVF 175
L + GG + D W+F M ++W I K +R H +L +++
Sbjct: 454 LLLIGGRKAPHQ-----GLSDNWIFDMKTREWSMI--KSLSHTRFRHSACSLPDGNVLIL 506
Query: 176 GGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPR---SGCQMAATPDGKILISGG 232
GG + + ++++ +K + P +G + I++ GG
Sbjct: 507 GGVTEG-------PAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGG 559
Query: 233 YSKQSVKKDVDKGIVHTDTFLLTPDSKTLRS 263
+ Q+ D + ++ +
Sbjct: 560 FMDQTTVSDK----AIIFKYDAENATEPITV 586
Score = 97.9 bits (243), Expect = 3e-23
Identities = 43/232 (18%), Positives = 75/232 (32%), Gaps = 41/232 (17%)
Query: 45 PTRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNL----FVSAPGAPP 100
P R +F +QL+L GG + L + ++ +
Sbjct: 437 PVARMCHTFTTISRNNQLLLIGGRK--------APHQGLSDNWIFDMKTREWSMIKSLSH 488
Query: 101 PRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDT-PPS 159
R H +L G + + GG + ++ + E+ ++ + KD +
Sbjct: 489 TRFRHSACSLP--DGNVLILGGVTEGP---------AMLLYNVTEEIFKDVTPKDEFFQN 537
Query: 160 RSGHRMIAL----KKHLVVFGGFHDNLREAKYYNDVHIFDLE----TYAWKKIEPLGAGP 211
+ K+ +++ GGF D + IF + T I+ L
Sbjct: 538 SLVSAGLEFDPVSKQGIILGGGFMDQTT---VSDKAIIFKYDAENATEPITVIKKLQHPL 594
Query: 212 APRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTLRS 263
R G Q+ K+LI GG S + L P S+TL S
Sbjct: 595 FQRYGSQIKYITPRKLLIVGGTSPSGLFDR------TNSIISLDPLSETLTS 640
Score = 79.4 bits (195), Expect = 6e-17
Identities = 25/180 (13%), Positives = 48/180 (26%), Gaps = 10/180 (5%)
Query: 58 DKDQLILFGGEFYDGQKFVFGSPKALDHLILMNLFVSAPGAPPPRCSHQMVALSADKGQL 117
+++ GG ++ + I ++ S + K +
Sbjct: 499 PDGNVLILGGVTEGPAMLLY----NVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI 554
Query: 118 WMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKH-LVVFG 176
+ GG + S E + R G ++ + L++ G
Sbjct: 555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVG 614
Query: 177 GFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRS----GCQMAATPDGKILISGG 232
G + N + D + I S G + +T G I I GG
Sbjct: 615 GTSPS-GLFDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGG 673
Score = 62.5 bits (151), Expect = 3e-11
Identities = 15/156 (9%), Positives = 40/156 (25%), Gaps = 17/156 (10%)
Query: 109 ALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIAL 168
L L A F + + + + +++ + P +R +
Sbjct: 337 HLFCHHYVLCHATNYKEFAFTQGFLFDRSISEINLTVDEDYQLLECECPINRKFGDVDVA 396
Query: 169 KKHLVVFGGFHDNLREAKYYNDVHIFDLETYAW---KKIEPLGAGPAPRSGCQMAA-TPD 224
+ GG + N++ + P R + +
Sbjct: 397 GNDVFYMGGSNPY-----RVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRN 451
Query: 225 GKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKT 260
++L+ GG +D ++ ++
Sbjct: 452 NQLLLIGGRK--------APHQGLSDNWIFDMKTRE 479
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid
metabolism, kelch repeat, beta-propeller; HET: MSE;
1.50A {Escherichia coli}
Length = 357
Score = 77.7 bits (191), Expect = 1e-16
Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 18/151 (11%)
Query: 96 PGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKD 155
P P P S +++ G + ++ D +KKW +
Sbjct: 4 PETPVPFKSGTGAID---NDTVYIGLGSAGT----AWYKL-DTQAK---DKKWTAL--AA 50
Query: 156 TPPS-RSGHRMIALKKHLVVFGGF-HDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAP 213
P R + +L VFGG ++ + +NDVH ++ +T +W K+ P
Sbjct: 51 FPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSH--APMG 108
Query: 214 RSGCQMAATPDGKILISGGYSKQSVKKDVDK 244
+G +GK ++GG ++ +
Sbjct: 109 MAGHVTFV-HNGKAYVTGGVNQNIFNGYFED 138
Score = 71.5 bits (175), Expect = 2e-14
Identities = 29/177 (16%), Positives = 48/177 (27%), Gaps = 35/177 (19%)
Query: 100 PPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEK--KWEKIVCKDTP 157
+V + W+ GE + ++ KW K+ +P
Sbjct: 189 YGTAGAAVVNK---GDKTWLINGEAKPGLRT-----DAVFELDFTGNNLKWNKLAPVSSP 240
Query: 158 PSRSGHRMIALKKHLVVFG-----GFHDNLREAKYYND--------VHIFDLETYAWKKI 204
+G L+ G G +N + K Y I W K
Sbjct: 241 DGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS 300
Query: 205 EPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTL 261
L R+ + +LI GG + G TD+ L+T +
Sbjct: 301 GEL---SQGRAYGVSLPW-NNSLLIIGGET--------AGGKAVTDSVLITVKDNKV 345
Score = 53.8 bits (129), Expect = 1e-08
Identities = 22/186 (11%), Positives = 46/186 (24%), Gaps = 39/186 (20%)
Query: 95 APGAPPPRCSHQMVALSADKGQLWMFGG----------------------------EFSS 126
AP H G+ ++ GG +
Sbjct: 102 MSHAPMGMAGHVTFVH---NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFD 158
Query: 127 ASESQFHHYKDLWVFRMGEKKWEKIVCKDTP-PSRSGHRMIALKKHLVVFGGFHDNLREA 185
+ K L F ++W ++P +G ++ + G
Sbjct: 159 KKAEDYFFNKFLLSFDPSTQQWSYA--GESPWYGTAGAAVVNKGDKTWLINGEAKP---G 213
Query: 186 KYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQM-AATPDGKILISGGYSKQSVKKDVDK 244
+ V D K L +P A + ++ +GG + +++
Sbjct: 214 LRTDAVFELDFTGNNLKW-NKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQN 272
Query: 245 GIVHTD 250
G +
Sbjct: 273 GKNYAH 278
Score = 46.1 bits (109), Expect = 5e-06
Identities = 26/173 (15%), Positives = 47/173 (27%), Gaps = 22/173 (12%)
Query: 46 TRRANFSFLAHPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNLFVSAPGAPPPRCSH 105
A + + DK L GE G + + LD + P
Sbjct: 189 YGTAGAAVVNKGDK--TWLINGEAKPGLRTD--AVFELDFTGNNLKWNKLAPVSSPDGVA 244
Query: 106 QMVALSADKGQLWMFGGEFSSASESQF--------HHYKDLW---VFRMGEKKWEKIVCK 154
A ++ L GG S + K + + KW+K
Sbjct: 245 GGFAGISN-DSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS--G 301
Query: 155 DTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPL 207
+ R+ + L++ GG K D + ++ ++ L
Sbjct: 302 ELSQGRAYGVSLPWNNSLLIIGGETAG---GKAVTDSVLITVKD-NKVTVQNL 350
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural
genomics, structur genomics consortium, SGC, kelch
repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Length = 306
Score = 72.4 bits (178), Expect = 5e-15
Identities = 28/175 (16%), Positives = 56/175 (32%), Gaps = 33/175 (18%)
Query: 99 PPPRCSHQMVALSADKGQLWMFGGEFSSASESQ-------FHHYKDLWVFR--MGEKKWE 149
RCSH MV G +++ GG + + + + W M E
Sbjct: 137 LTQRCSHGMVEA---NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEA--- 190
Query: 150 KIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGA 209
R H ++ +K + GG + ++V +D++ WK + P+
Sbjct: 191 ----------RKNHGLVFVKDKIFAVGGQNGL----GGLDNVEYYDIKLNEWKMVSPM-- 234
Query: 210 GPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTLRSC 264
P + AA + + G+ + + TD ++ +
Sbjct: 235 -PWKGVTVKCAAV-GSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVRAFPVT 287
Score = 64.3 bits (157), Expect = 3e-12
Identities = 28/142 (19%), Positives = 45/142 (31%), Gaps = 14/142 (9%)
Query: 101 PRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSR 160
PR S A +G+++ GG SE + + W R
Sbjct: 91 PRDSLAACAA---EGKIYTSGG-----SEVGNSALYLFECYDTRTESWHTK--PSMLTQR 140
Query: 161 SGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMA 220
H M+ + V GG N + N ++D T W ++ P+ R +
Sbjct: 141 CSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPM---IEARKNHGLV 197
Query: 221 ATPDGKILISGGYSKQSVKKDV 242
KI GG + +V
Sbjct: 198 FV-KDKIFAVGGQNGLGGLDNV 218
Score = 56.6 bits (137), Expect = 1e-09
Identities = 22/133 (16%), Positives = 37/133 (27%), Gaps = 28/133 (21%)
Query: 101 PRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSR 160
PR ++ +FGG + F + W I + R
Sbjct: 6 PRRK-------KHDYRIALFGGSQPQSCR----------YFNPKDYSWTDI--RCPFEKR 46
Query: 161 SGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMA 220
+ + + GG + +++ +W P PR
Sbjct: 47 RDAACVFWDNVVYILGGSQLF-----PIKRMDCYNVVKDSWYSKLGP---PTPRDSLAAC 98
Query: 221 ATPDGKILISGGY 233
A +GKI SGG
Sbjct: 99 AA-EGKIYTSGGS 110
Score = 53.5 bits (129), Expect = 1e-08
Identities = 17/138 (12%), Positives = 48/138 (34%), Gaps = 23/138 (16%)
Query: 101 PRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSR 160
R +H +V + K +++ GG+ + ++ + + +W+ + P
Sbjct: 190 ARKNHGLVFV---KDKIFAVGGQ------NGLGGLDNVEYYDIKLNEWKMVS--PMPWKG 238
Query: 161 SGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMA 220
+ A+ + V GF + ++ ET W + A +
Sbjct: 239 VTVKCAAVGSIVYVLAGFQGV----GRLGHILEYNTETDKWVANSKV---RAFPVTSCLI 291
Query: 221 ATPDGKILISGGYSKQSV 238
++ + G +++++
Sbjct: 292 C-----VVDTCGANEETL 304
Score = 43.1 bits (102), Expect = 4e-05
Identities = 14/76 (18%), Positives = 21/76 (27%), Gaps = 12/76 (15%)
Query: 164 RMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATP 223
R + +FGG F+ + Y+W I R
Sbjct: 7 RRKKHDYRIALFGG--------SQPQSCRYFNPKDYSWTDIRCP---FEKRRDA-ACVFW 54
Query: 224 DGKILISGGYSKQSVK 239
D + I GG +K
Sbjct: 55 DNVVYILGGSQLFPIK 70
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding,
invasion and metastasis, UBL conjugation pathway, UBL
protein folding; 2.00A {Rattus norvegicus}
Length = 318
Score = 69.7 bits (171), Expect = 4e-14
Identities = 28/165 (16%), Positives = 57/165 (34%), Gaps = 24/165 (14%)
Query: 99 PPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPP 158
P H +++ G ++ GG+ ++++ + W+ + P
Sbjct: 146 PIKVYGHNVISH---NGMIYCLGGKTDDKK-----CTNRVFIYNPKKGDWKDL-----AP 192
Query: 159 ---SRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRS 215
RS + K +V+ GG ++ V FDL+T W+ + P RS
Sbjct: 193 MKTPRSMFGVAIHKGKIVIAGGVTED----GLSASVEAFDLKTNKWEVMTEF---PQERS 245
Query: 216 GCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKT 260
+ + G + GG++ ++ D + D K
Sbjct: 246 SISLVSL-AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289
Score = 63.1 bits (154), Expect = 8e-12
Identities = 23/143 (16%), Positives = 49/143 (34%), Gaps = 11/143 (7%)
Query: 92 FVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKI 151
+++A PR +V + Q+++ GG + + +W +
Sbjct: 37 YLTALAEQIPRNHSSIVTQ---QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL 93
Query: 152 VCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGP 211
P +R + + + V G +L+ + V +D W +++ L P
Sbjct: 94 P--PLPSARCLFGLGEVDDKIYVVAGK--DLQTEASLDSVLCYDPVAAKWSEVKNL---P 146
Query: 212 APRSGCQMAATPDGKILISGGYS 234
G + +G I GG +
Sbjct: 147 IKVYGH-NVISHNGMIYCLGGKT 168
Score = 60.1 bits (146), Expect = 1e-10
Identities = 45/215 (20%), Positives = 90/215 (41%), Gaps = 23/215 (10%)
Query: 33 RKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKF---VFGSPKALDHLILM 89
+N+ + E R + S + ++Q+ + GG + D + + LD++
Sbjct: 32 MENECYLTALAEQIPRNHSSIVTQ--QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVS-- 87
Query: 90 NLFVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWE 149
+ +V P P RC + + ++++ G +E+ + + KW
Sbjct: 88 SEWVGLPPLPSARCLFGLGEV---DDKIYVVAG-KDLQTEA---SLDSVLCYDPVAAKWS 140
Query: 150 KIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGA 209
++ K+ P GH +I+ + GG D+ K N V I++ + WK + P+
Sbjct: 141 EV--KNLPIKVYGHNVISHNGMIYCLGGKTDD---KKCTNRVFIYNPKKGDWKDLAPM-- 193
Query: 210 GPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDK 244
PRS +A GKI+I+GG ++ + V+
Sbjct: 194 -KTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEA 226
Score = 47.3 bits (113), Expect = 2e-06
Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 12/127 (9%)
Query: 101 PRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSR 160
PR + KG++ + GG + F + KWE + + P R
Sbjct: 196 PRSMFGVAIH---KGKIVIAGGVTED------GLSASVEAFDLKTNKWEVMT--EFPQER 244
Query: 161 SGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMA 220
S +++L L GGF E+K + + D+ Y K E G R A
Sbjct: 245 SSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGMLKEIRYAS-GA 303
Query: 221 ATPDGKI 227
+ ++
Sbjct: 304 SCLATRL 310
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat
motif, protein binding; HET: MSE; 1.35A {Homo sapiens}
SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A
2z32_A 3ade_A
Length = 308
Score = 68.5 bits (168), Expect = 1e-13
Identities = 34/167 (20%), Positives = 53/167 (31%), Gaps = 19/167 (11%)
Query: 99 PPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPP 158
R + L L+ GG F + + +W I
Sbjct: 156 LTRRIGVGVAVL---NRLLYAVGG-FDGTN-----RLNSAECYYPERNEWRMI--TAMNT 204
Query: 159 SRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQ 218
RSG + L + GG+ N V +D+ET W + P+ RS
Sbjct: 205 IRSGAGVCVLHNCIYAAGGYDGQ----DQLNSVERYDVETETWTFVAPM---KHRRSALG 257
Query: 219 MAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTLRSCL 265
G+I + GGY + V+ TDT+ + RS +
Sbjct: 258 -ITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGV 303
Score = 63.1 bits (154), Expect = 8e-12
Identities = 31/165 (18%), Positives = 52/165 (31%), Gaps = 17/165 (10%)
Query: 101 PRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSR 160
PR SH ++ GG F + L + W ++ D R
Sbjct: 15 PRGSHAPKV----GRLIYTAGGYFRQSLSY-------LEAYNPSNGTWLRL--ADLQVPR 61
Query: 161 SGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMA 220
SG + L GG +++ + + ++ T W P+ PR+ +
Sbjct: 62 SGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPM---SVPRNRIGVG 118
Query: 221 ATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTLRSCL 265
DG I GG V++ D + L T R +
Sbjct: 119 VI-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGV 162
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway,
protein-binding, UBI degradation, UBL conjugation
pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Length = 301
Score = 67.7 bits (166), Expect = 2e-13
Identities = 26/144 (18%), Positives = 45/144 (31%), Gaps = 19/144 (13%)
Query: 99 PPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPP 158
R +V G ++ GG + Y D W +
Sbjct: 147 QTAREGAGLVVA---SGVIYCLGGYDGLNILNSVEKY-DP-----HTGHWTNV--TPMAT 195
Query: 159 SRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQ 218
RSG + L H+ V GGF + + V +++ T +W + + PR
Sbjct: 196 KRSGAGVALLNDHIYVVGGFDGT----AHLSSVEAYNIRTDSWTTVTSM---TTPRCYVG 248
Query: 219 MAATPDGKILISGGYSKQSVKKDV 242
G++ GY S+ +
Sbjct: 249 ATVL-RGRLYAIAGYDGNSLLSSI 271
Score = 58.1 bits (141), Expect = 4e-10
Identities = 25/145 (17%), Positives = 42/145 (28%), Gaps = 22/145 (15%)
Query: 101 PRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSR 160
PR L A+ L + GG SQ + + ++W + R
Sbjct: 5 PRTRA---RLGAN-EVLLVVGG-----FGSQQSPIDVVEKYDPKTQEWSFL--PSITRKR 53
Query: 161 SGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDL---ETYAWKKIEPLGAGPAPRSGC 217
++L + V GG+ + V D E W + P+ R
Sbjct: 54 RYVASVSLHDRIYVIGGYDGR----SRLSSVECLDYTADEDGVWYSVAPM---NVRRGLA 106
Query: 218 QMAATPDGKILISGGYSKQSVKKDV 242
I +SGG+ +
Sbjct: 107 GATTL-GDMIYVSGGFDGSRRHTSM 130
Score = 56.5 bits (137), Expect = 1e-09
Identities = 29/164 (17%), Positives = 54/164 (32%), Gaps = 19/164 (11%)
Query: 101 PRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSR 160
R L +++ GG S + + + +W + D +R
Sbjct: 102 RRGLAGATTL---GDMIYVSGGFDGS------RRHTSMERYDPNIDQWSML--GDMQTAR 150
Query: 161 SGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMA 220
G ++ + GG+ N V +D T W + P+ RSG +A
Sbjct: 151 EGAGLVVASGVIYCLGGYDGL----NILNSVEKYDPHTGHWTNVTPM---ATKRSGAGVA 203
Query: 221 ATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTLRSC 264
+ I + GG+ + V+ + TD++ T R
Sbjct: 204 LL-NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCY 246
Score = 52.3 bits (126), Expect = 4e-08
Identities = 14/126 (11%), Positives = 33/126 (26%), Gaps = 18/126 (14%)
Query: 99 PPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPP 158
R + L +++ GG H + + + W +
Sbjct: 194 ATKRSGAGVALL---NDHIYVVGGF------DGTAHLSSVEAYNIRTDSWTTVT--SMTT 242
Query: 159 SRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQ 218
R L+ L G+ N + + +D +W+ + + R
Sbjct: 243 PRCYVGATVLRGRLYAIAGYDGN----SLLSSIECYDPIIDSWEVVTSM---GTQRCDAG 295
Query: 219 MAATPD 224
+ +
Sbjct: 296 VCVLRE 301
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo
sapiens}
Length = 302
Score = 65.0 bits (159), Expect = 2e-12
Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 17/142 (11%)
Query: 101 PRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSR 160
R S + + G L+ GG + AS + + +W I + R
Sbjct: 145 RRSSVGVGVV---GGLLYAVGG-YDVASR---QCLSTVECYNATTNEWTYI--AEMSTRR 195
Query: 161 SGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMA 220
SG + L L GG V ++D T AW+++ + R +
Sbjct: 196 SGAGVGVLNNLLYAVGGHDGP----LVRKSVEVYDPTTNAWRQVADM---NMCRRNAGVC 248
Query: 221 ATPDGKILISGGYSKQSVKKDV 242
A +G + + GG V
Sbjct: 249 AV-NGLLYVVGGDDGSCNLASV 269
Score = 58.4 bits (142), Expect = 3e-10
Identities = 25/147 (17%), Positives = 51/147 (34%), Gaps = 17/147 (11%)
Query: 119 MFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGF 178
+ GG+ A S + + E++W + + P R M+ + + GGF
Sbjct: 20 VVGGQAPKAIRS-------VECYDFKEERWHQ--VAELPSRRCRAGMVYMAGLVFAVGGF 70
Query: 179 HDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSV 238
+ + V +D W + + RS A +G + GG+ +
Sbjct: 71 NGS----LRVRTVDSYDPVKDQWTSVANM---RDRRSTLGAAVL-NGLLYAVGGFDGSTG 122
Query: 239 KKDVDKGIVHTDTFLLTPDSKTLRSCL 265
V+ + ++ + T RS +
Sbjct: 123 LSSVEAYNIKSNEWFHVAPMNTRRSSV 149
Score = 56.9 bits (138), Expect = 1e-09
Identities = 27/147 (18%), Positives = 48/147 (32%), Gaps = 23/147 (15%)
Query: 101 PRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPP-- 158
R + L G L+ GG S + + + +W + P
Sbjct: 98 RRSTLGAAVL---NGLLYAVGGFDGS------TGLSSVEAYNIKSNEWFHV-----APMN 143
Query: 159 -SRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGC 217
RS + + L GG+ R+ + V ++ T W I + RSG
Sbjct: 144 TRRSSVGVGVVGGLLYAVGGYDVASRQ--CLSTVECYNATTNEWTYIAEM---STRRSGA 198
Query: 218 QMAATPDGKILISGGYSKQSVKKDVDK 244
+ + + GG+ V+K V+
Sbjct: 199 GVGVL-NNLLYAVGGHDGPLVRKSVEV 224
Score = 52.3 bits (126), Expect = 4e-08
Identities = 21/129 (16%), Positives = 35/129 (27%), Gaps = 18/129 (13%)
Query: 99 PPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPP 158
R + L L+ GG K + V+ W ++ D
Sbjct: 192 STRRSGAGVGVL---NNLLYAVGGHDGPL------VRKSVEVYDPTTNAWRQVA--DMNM 240
Query: 159 SRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQ 218
R + A+ L V GG + V ++ T W + RS
Sbjct: 241 CRRNAGVCAVNGLLYVVGGDDGS----CNLASVEYYNPTTDKWTVVSSC--MSTGRSYA- 293
Query: 219 MAATPDGKI 227
D ++
Sbjct: 294 GVTVIDKRL 302
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding,
cytoskeleton; 1.78A {Homo sapiens}
Length = 315
Score = 64.3 bits (157), Expect = 4e-12
Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 10/136 (7%)
Query: 99 PPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPP 158
P+ +V + Q+++ GG F + + F + +W + P
Sbjct: 33 QVPKNHVSLVTK---ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP--PLPS 87
Query: 159 SRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQ 218
R + + V GG E + + V +D ++ W + +PL P G
Sbjct: 88 PRCLFGLGEALNSIYVVGGREIKDGE-RCLDSVMCYDRLSFKWGESDPL---PYVVYGH- 142
Query: 219 MAATPDGKILISGGYS 234
+ + + GG
Sbjct: 143 TVLSHMDLVYVIGGKG 158
Score = 60.1 bits (146), Expect = 1e-10
Identities = 39/215 (18%), Positives = 79/215 (36%), Gaps = 22/215 (10%)
Query: 33 RKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQ---KFVFGSPKALDHLILM 89
N+ + + + S L + +Q+ + GG FY+ + DHL
Sbjct: 21 AANECYCASLSSQVPKNHVS-LVTKE-NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLD-- 76
Query: 90 NLFVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWE 149
+ ++ P P PRC + +++ GG E + + KW
Sbjct: 77 SEWLGMPPLPSPRCLFGLGEA---LNSIYVVGGREIKDGERCL---DSVMCYDRLSFKWG 130
Query: 150 KIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGA 209
+ P GH +++ + V GG + K N + ++D + + WK++ P+
Sbjct: 131 ES--DPLPYVVYGHTVLSHMDLVYVIGGKGSD---RKCLNKMCVYDPKKFEWKELAPM-- 183
Query: 210 GPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDK 244
RS DG+I+++ G + + +
Sbjct: 184 -QTARSLFGATVH-DGRIIVAAGVTDTGLTSSAEV 216
Score = 55.1 bits (133), Expect = 4e-09
Identities = 22/139 (15%), Positives = 42/139 (30%), Gaps = 22/139 (15%)
Query: 101 PRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSR 160
R G++ + G + V+ + + KW + P R
Sbjct: 186 ARSLFGATVH---DGRIIVAAGVTDT------GLTSSAEVYSITDNKWAPF--EAFPQER 234
Query: 161 SGHRMIALKKHLVVFGGFHDNLRE-----AKYYNDVHIFDLETYAWKKIEPLGAGPAPRS 215
S +++L L GGF E ND+ ++ E W+ + A +
Sbjct: 235 SSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVLRE---IAYAA 291
Query: 216 GCQMAATPDGKILISGGYS 234
G A ++ +
Sbjct: 292 G---ATFLPVRLNVLRLTK 307
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 5e-05
Identities = 48/272 (17%), Positives = 85/272 (31%), Gaps = 79/272 (29%)
Query: 2 RGIWDRHAMSWTIMFNEDIEKIVRDIEAEEKRKNKVIEKVVPEPTR----RANFSFLA-H 56
+ +W+R + + I IV + N V + + R N+S +
Sbjct: 1643 QDVWNRADNHFKDTYGFSILDIVIN--------NPVNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 57 PDKDQLI----LFGGEFYDGQKFVFGSPK-ALDH-------LILMN--LF--VSAPGAPP 100
D + +F + F S K L L LM F + + G P
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIP 1754
Query: 101 PRCSHQMVA-LSADKGQLWMFGGEFSS-ASESQFHHYKDLW--VFRMGEKKWEKIVCKDT 156
A S L GE+++ AS + + L VF G + V +D
Sbjct: 1755 ADA---TFAGHS-----L----GEYAALASLADVMSIESLVEVVFYRG-MTMQVAVPRD- 1800
Query: 157 PPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSG 216
RS + MIA+ V + L+ +E +G R+G
Sbjct: 1801 ELGRSNYGMIAINPGRVAASFSQEALQYV------------------VERVGK----RTG 1838
Query: 217 --CQMAA--TPDGKILISGGYSKQSVKKDVDK 244
++ + + + +G + +D
Sbjct: 1839 WLVEIVNYNVENQQYVAAGD------LRALDT 1864
Score = 40.4 bits (94), Expect = 4e-04
Identities = 32/203 (15%), Positives = 61/203 (30%), Gaps = 76/203 (37%)
Query: 15 MFNEDIEKIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQK 74
M + + ++ E+ ++ V + N S L + ++ L G +
Sbjct: 338 MLS------ISNLTQEQ------VQDYV----NKTN-SHLPAGKQVEISLVNGA----KN 376
Query: 75 FVF-GSPKALDHLILMNLFVSAPG------AP----PPRCSHQMVALSA----------- 112
V G P++L L L AP P + S++ + +++
Sbjct: 377 LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPAS 436
Query: 113 DKGQLWMFGGEFS-SASESQFHHY-----KDL-------------WVFRMGEKKWEKIVC 153
D + S +A + Q Y DL + R+ KWE
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRL-PVKWETTT- 494
Query: 154 KDTPPSRSGHRMIALKKHLVVFG 176
+ H++ FG
Sbjct: 495 -QFKAT-----------HILDFG 505
Score = 31.2 bits (70), Expect = 0.42
Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 26/75 (34%)
Query: 123 EFSSASE--SQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIALKKHLVVFGGFHD 180
E ++ +E +F Y V PS+ G L + F +
Sbjct: 53 EPTTPAELVGKFLGY----------------VSSLVEPSKVGQFDQVLN---LCLTEFEN 93
Query: 181 N-LREAKYYNDVHIF 194
L ND+H
Sbjct: 94 CYLEG----NDIHAL 104
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence
form, precursor of copper enzyme., oxidoreductase; 1.40A
{Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB:
1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A
2eib_A 1t2x_A 2eid_A 2wq8_A
Length = 656
Score = 39.9 bits (92), Expect = 5e-04
Identities = 36/216 (16%), Positives = 56/216 (25%), Gaps = 47/216 (21%)
Query: 45 PTRRANFSFLAHPDKDQLILFG----------GEFYDGQKFVFGSPKALDHLILMNLFVS 94
R S D + G GE Y P + + S
Sbjct: 284 QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYS--------PSS-------KTWTS 328
Query: 95 APGAP-PPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVC 153
P A P + L W+FG + + W + G +
Sbjct: 329 LPNAKVNPMLTADKQGLYRSDNHAWLFGWK-KGSVFQAGPSTAMNWYYTSGSGDVKSA-- 385
Query: 154 KDTPPSRSGHRMI---------ALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYA---- 200
+R A+K ++ FGG D +++ + HI L
Sbjct: 386 GKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDY-QDSDATTNAHIITLGEPGTSPN 444
Query: 201 -WKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSK 235
L R+ PDG I+GG +
Sbjct: 445 TVFASNGL---YFARTFHTSVVLPDGSTFITGGQRR 477
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 37.1 bits (85), Expect = 0.003
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 20/66 (30%)
Query: 12 WTIMFNEDIEKIVRDIEAEEKRKNKVIEKVVPE-----------------PTRRANFSFL 54
W + +++ D A + + + EK + R A+ +F
Sbjct: 90 WREEQRKRLQE--LD-AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFY 146
Query: 55 AHPDKD 60
PD D
Sbjct: 147 QQPDAD 152
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A
{Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Length = 349
Score = 37.4 bits (86), Expect = 0.003
Identities = 10/47 (21%), Positives = 14/47 (29%), Gaps = 5/47 (10%)
Query: 188 YNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYS 234
N + +DL+ K L +A G L GG
Sbjct: 274 LNRLAKYDLKQRKLIKAANLDHTYY-----CVAFDKKGDKLYLGGTF 315
Score = 34.3 bits (78), Expect = 0.033
Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 19/89 (21%)
Query: 189 NDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKIL-ISGGYSKQSVKKDVDKGIV 247
N++H+ D+ + K + P + PD + + + D+D
Sbjct: 21 NNLHVVDVASDTVYKSCVMPDKFGPGT---AMMAPDNRTAYVLNNHYGDIYGIDLDTCKN 77
Query: 248 ---------------HTDTFLLTPDSKTL 261
+F ++PD K +
Sbjct: 78 TFHANLSSVPGEVGRSMYSFAISPDGKEV 106
Score = 33.2 bits (75), Expect = 0.080
Identities = 12/63 (19%), Positives = 21/63 (33%)
Query: 170 KHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILI 229
K + L + + T + +P+ P PR M A DG + +
Sbjct: 104 KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV 163
Query: 230 SGG 232
+G
Sbjct: 164 AGP 166
Score = 30.9 bits (69), Expect = 0.39
Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 17/119 (14%)
Query: 108 VALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIVCKDTPPSRSGHRMIA 167
A+S D +++ ++ L VF + K V P + A
Sbjct: 97 FAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAA 156
Query: 168 LKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGK 226
L V G D++ D++T + PL + PD
Sbjct: 157 DDGSLYVAG------------PDIYKMDVKTGKYTVALPLRNWNRK-----GYSAPDVL 198
Score = 30.5 bits (68), Expect = 0.55
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 188 YNDVHIFDLETYAWKKIEPLGAGPAP--RSGCQMAATPDGKIL 228
Y D++ DL+T L + P RS A +PDGK +
Sbjct: 64 YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEV 106
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit;
oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus
denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Length = 337
Score = 34.0 bits (77), Expect = 0.043
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 188 YNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYS 234
YN + FDLE A K PL + + DG + GG
Sbjct: 259 YNVLESFDLEKNASIKRVPLPHSYY-----SVNVSTDGSTVWLGGAL 300
Score = 30.5 bits (68), Expect = 0.59
Identities = 23/171 (13%), Positives = 41/171 (23%), Gaps = 19/171 (11%)
Query: 93 VSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKWEKIV 152
+ S ALS D L ++ + ++ K
Sbjct: 72 IDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF 131
Query: 153 CKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPA 212
+ P + L G D+H+ D E + +P+ + A
Sbjct: 132 --EAPRQITMLAWARDGSKLYGLGR------------DLHVMDPEAGTLVEDKPIQSWEA 177
Query: 213 PRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTDTFLLTPDSKTLRS 263
A PD + + S + D T L +
Sbjct: 178 ET-----YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLT 223
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center for structural genomi
CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Length = 331
Score = 33.6 bits (77), Expect = 0.051
Identities = 6/88 (6%), Positives = 17/88 (19%), Gaps = 22/88 (25%)
Query: 189 NDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVH 248
+ + + K + + + TPD + ++
Sbjct: 62 QTLVQIETQLEPPKVVAIQEGQSSM---ADVDITPDDQFAVTVTGLNHPFNMQS----YS 114
Query: 249 TDTFLL---------------TPDSKTL 261
+P+ L
Sbjct: 115 FLKNKFISTIPIPYDAVGIAISPNGNGL 142
Score = 32.8 bits (75), Expect = 0.094
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 6/52 (11%)
Query: 189 NDVHIFDLETYAWKKIEPLGAGPAPRSGC-----QMAATPDGK-ILISGGYS 234
DV F+ + ++ G G QMA + IS S
Sbjct: 243 VDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS 294
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta
propeller, unknown function; 1.99A {Leptospira
interrogans}
Length = 433
Score = 33.7 bits (77), Expect = 0.051
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 189 NDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKIL 228
+ + ++DL+ +K P+ P +A +PDGK L
Sbjct: 325 SKIEVYDLKEKKVQKSIPVFDKPN-----TIALSPDGKYL 359
Score = 33.3 bits (76), Expect = 0.068
Identities = 9/83 (10%), Positives = 24/83 (28%), Gaps = 10/83 (12%)
Query: 189 NDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGK-ILISGGYS---------KQSV 238
+ + D+ + ++ P + + P+ + +S + +
Sbjct: 144 EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAY 203
Query: 239 KKDVDKGIVHTDTFLLTPDSKTL 261
K VD + L P +
Sbjct: 204 KATVDLTGKWSKILLYDPIRDLV 226
Score = 30.6 bits (69), Expect = 0.53
Identities = 11/89 (12%), Positives = 22/89 (24%), Gaps = 21/89 (23%)
Query: 189 NDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGK-ILISGGYSKQSVKKDVDKGIV 247
D+ + D +T + P + + DGK + I+ + GI
Sbjct: 234 EDISVIDRKTKLEIRKTDKIGLPR-----GLLLSKDGKELYIAQFSASNQESGGGRLGIY 288
Query: 248 HTDT---------------FLLTPDSKTL 261
D + +
Sbjct: 289 SMDKEKLIDTIGPPGNKRHIVSGNTENKI 317
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller
superfamily, protein binding; HET: YCM; 2.40A
{Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Length = 391
Score = 32.4 bits (74), Expect = 0.12
Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 16/83 (19%)
Query: 189 NDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGK-ILISGGYSKQ---------SV 238
NDV I D T P G+ P +A +PDGK + ++ S +V
Sbjct: 54 NDVSIIDTATNNVIATVPAGSSPQ-----GVAVSPDGKQVYVTNMASSTLSVIDTTSNTV 108
Query: 239 KKDVDKGIVHTDTFLLTPDSKTL 261
V G L+PD K L
Sbjct: 109 AGTVKTG-KSPLGLALSPDGKKL 130
Score = 32.4 bits (74), Expect = 0.12
Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 14/82 (17%)
Query: 189 NDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKK-DVDKG-I 246
+++ + D+ + P+G+ P +PDG + V D +
Sbjct: 12 DNISVIDVTSNKVTATIPVGSNPM-----GAVISPDGTKVYVANAHSNDVSIIDTATNNV 66
Query: 247 VHT-------DTFLLTPDSKTL 261
+ T ++PD K +
Sbjct: 67 IATVPAGSSPQGVAVSPDGKQV 88
Score = 31.7 bits (72), Expect = 0.22
Identities = 14/82 (17%), Positives = 23/82 (28%), Gaps = 14/82 (17%)
Query: 189 NDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKK-DVDKGIV 247
V + + T A +G P +A TPDG + + S+ D V
Sbjct: 138 KTVSVINTVTKAVINTVSVGRSPK-----GIAVTPDGTKVYVANFDSMSISVIDTVTNSV 192
Query: 248 --------HTDTFLLTPDSKTL 261
+ P+
Sbjct: 193 IDTVKVEAAPSGIAVNPEGTKA 214
Score = 30.5 bits (69), Expect = 0.56
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 187 YYNDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKK-DVDKG 245
Y+N V + D T P+G PA +A TPDGK + +V D
Sbjct: 222 YFNTVSMIDTGTNKITARIPVGPDPA-----GIAVTPDGKKVYVALSFXNTVSVIDTATN 276
Query: 246 IV 247
+
Sbjct: 277 TI 278
Score = 30.1 bits (68), Expect = 0.65
Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 16/83 (19%)
Query: 189 NDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKK-DVDKGIV 247
+ + + D + G P +A +PDGK L ++V + V
Sbjct: 96 STLSVIDTTSNTVAGTVKTGKSPL-----GLALSPDGKKLYVTNNGDKTVSVINTVTKAV 150
Query: 248 HTDTFL---------LTPDSKTL 261
+T +TPD +
Sbjct: 151 -INTVSVGRSPKGIAVTPDGTKV 172
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.17
Identities = 7/24 (29%), Positives = 10/24 (41%), Gaps = 6/24 (25%)
Query: 235 KQSVKKDVDKGIVHTDTFLLTPDS 258
KQ++KK + L DS
Sbjct: 19 KQALKK------LQASLKLYADDS 36
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding;
1.70A {Escherichia coli} PDB: 3vh0_A*
Length = 353
Score = 30.9 bits (70), Expect = 0.42
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 189 NDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKIL 228
V + D ++Y K ++ P S +A + DGK L
Sbjct: 294 GKVSVIDAKSY--KVVKTFDTPTHPNS---LALSADGKTL 328
Score = 29.7 bits (67), Expect = 1.0
Identities = 13/83 (15%), Positives = 22/83 (26%), Gaps = 17/83 (20%)
Query: 189 NDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGK-ILISGGYS---------KQSV 238
+V + D A + P ++ + V
Sbjct: 253 AEVLVVDTRNGNILAKVAAPESLA------VLFNPARNEAYVTHRQAGKVSVIDAKSYKV 306
Query: 239 KKDVDKGIVHTDTFLLTPDSKTL 261
K D H ++ L+ D KTL
Sbjct: 307 VKTFDTP-THPNSLALSADGKTL 328
>2jkb_A Sialidase B; intramolecular trans-sialidase, lyase, glycosidase,
neuraminidase; HET: SKD; 1.54A {Streptococcus
pneumoniae} PDB: 2vw2_A* 2vw1_A* 2vw0_A*
Length = 686
Score = 30.4 bits (67), Expect = 0.79
Identities = 20/157 (12%), Positives = 39/157 (24%), Gaps = 32/157 (20%)
Query: 89 MNLFVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKDLWVFRMGEKKW 148
MN+F ++ + S ++G+ W + +
Sbjct: 431 MNVFYKDSLFKVTPTNYIAMTTSQNRGESW-------EQFKLLPPFLGEKHNG------- 476
Query: 149 EKIVCKDTPPSRSGHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLG 208
G + + ++F + +D +T WKK
Sbjct: 477 --------TYLCPGQGLALKSSNRLIFATYTSGELTYLISDD----SGQT--WKKSSASI 522
Query: 209 AGPAPRSGCQMAATPDGKILI----SGGYSKQSVKKD 241
+ QM DG I + G +D
Sbjct: 523 PFKNATAEAQMVELRDGVIRTFFRTTTGKIAYMTSRD 559
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.82
Identities = 34/245 (13%), Positives = 64/245 (26%), Gaps = 78/245 (31%)
Query: 1 MRGIWDRHAMSWTI-MFNEDIE-KIV---RDIEAEEKRKNKVIEKVVPEPTRRANFSFLA 55
+ + + + F ++ KI+ R + + + + L
Sbjct: 250 LLNVQN----AKAWNAF--NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT----LT 299
Query: 56 HPDKDQLILFGGEFYDGQKFVFGSPKALDHLILMNLFVSAPGAPPPRCSHQMVALS-ADK 114
+ L+L K++ P+ L P R S ++A S D
Sbjct: 300 PDEVKSLLL---------KYLDCRPQDLPR--------EVLTTNPRRLS--IIAESIRDG 340
Query: 115 GQLW-----MFGGEFSSASESQF---------HHYKDLWVFRMGEK--------KW---- 148
W + + ++ ES + L VF W
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 149 ----EKIVC---------KDTPPSRSG--HRMIALKKHLVVFGGFHDNLREAKYYNDVHI 193
+V K S + LK L H ++ + +YN
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD--HYNIPKT 458
Query: 194 FDLET 198
FD +
Sbjct: 459 FDSDD 463
Score = 27.1 bits (59), Expect = 7.3
Identities = 19/121 (15%), Positives = 41/121 (33%), Gaps = 16/121 (13%)
Query: 18 EDIEKIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQLILFGGEFYDGQKFVF 77
+D++ + + I + I+ ++ + L L+ E QKFV
Sbjct: 36 KDVQDMPKSI-----LSKEEIDHIIMSKDAVSGTLRLF----WTLLSKQEEMV--QKFV- 83
Query: 78 GSPKALDHLILMNLFVSAPGAPPPRCSHQMVALSADKGQLWMFGGEFSSASESQFHHYKD 137
+++ LM+ + P S + +L+ F+ + S+ Y
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQP----SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 138 L 138
L
Sbjct: 140 L 140
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat
protein TRM82; S-adenosyl-L-methionine, tRNA processing,
phosphorylation, M7G, spout MT, WD repeat; 2.40A
{Saccharomyces cerevisiae}
Length = 450
Score = 29.7 bits (66), Expect = 0.96
Identities = 8/66 (12%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Query: 191 VHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKKDVDKGIVHTD 250
+ +FD++ + ++ + ++ D +I K +D + +
Sbjct: 127 LLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIA--DKFGDVYSIDINSIPEE 184
Query: 251 TFLLTP 256
F P
Sbjct: 185 KFTQEP 190
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics,
structural genomic consortium, SGC, apoptosis,
transcription; 1.95A {Homo sapiens}
Length = 357
Score = 29.6 bits (67), Expect = 1.0
Identities = 5/45 (11%), Positives = 18/45 (40%)
Query: 191 VHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSK 235
+ +++++ K + + + G A + + L +G +
Sbjct: 46 IQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90
>3r8n_J 30S ribosomal protein S10; protein biosynthesis, RNA, tRNA,
transfer RNA, 16S ribosomal subunit, RRF; 3.00A
{Escherichia coli} PDB: 2ykr_J 3fih_J* 2wwl_J 3oar_J
3oaq_J 3ofb_J 3ofa_J 3ofp_J 3ofx_J 3ofy_J 3ofo_J 3r8o_J
4a2i_J 3i1m_J 1p6g_J 1p87_J* 1vs7_J* 2avy_J 2aw7_J
1vs5_J ...
Length = 98
Score = 28.1 bits (63), Expect = 1.1
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 17 NEDIEKIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQ 61
+ I++ +I KR + +P PTR+ F+ L P ++
Sbjct: 11 HRLIDQATAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNK 55
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting
protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles
gambiae}
Length = 358
Score = 28.4 bits (63), Expect = 2.8
Identities = 6/67 (8%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 3 GIWD---RHAMSWTIMFNEDIEKIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDK 59
G+ N ++ +++ + + V + VV + + +++ ++
Sbjct: 277 GLCRALHEIFPGDASTGNRELVRMISEEFQNQSTLGGVAQSVVHRIVQAHHDTYMQLVEE 336
Query: 60 DQLILFG 66
+ + F
Sbjct: 337 HRSVTFN 343
>2mad_H Methylamine dehydrogenase (heavy subunit);
oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A
{Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H*
1maf_H*
Length = 373
Score = 28.3 bits (62), Expect = 2.8
Identities = 7/69 (10%), Positives = 15/69 (21%), Gaps = 8/69 (11%)
Query: 161 SGHRMIAL---KKHLVVFGGFHDNLREAKYYNDVHIFDLETYAWKKIEPLGAGPAPRSGC 217
G + +A + + + +V LG
Sbjct: 267 GGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVD----- 321
Query: 218 QMAATPDGK 226
++ DG
Sbjct: 322 AISVAQDGG 330
>2vqe_J 30S ribosomal protein S10, 30S ribosomal protein S6;
tRNA-binding, rRNA-binding, metal-binding, zinc-finger,
translation; HET: TM2 PAR; 2.5A {Thermus thermophilus}
SCOP: d.58.15.1 PDB: 1gix_M* 1hnw_J* 1hnx_J* 1hnz_J*
1hr0_J 1ibk_J* 1ibl_J* 1ibm_J 1jgo_M* 1jgp_M* 1jgq_M*
1ml5_M* 1xmo_J* 1xmq_J* 1xnq_J* 1xnr_J* 1yl4_M 2b64_J*
2b9m_J* 2b9o_J* ...
Length = 105
Score = 26.9 bits (60), Expect = 2.9
Identities = 9/44 (20%), Positives = 19/44 (43%)
Query: 18 EDIEKIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHPDKDQ 61
+ ++ + I +R + +P PTR F+ + P K +
Sbjct: 14 KTLDASAQKIVEAARRSGAQVSGPIPLPTRVRRFTVIRGPFKHK 57
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA
polymerase III; HET: DGT; 2.39A {Geobacillus
kaustophilus} PDB: 3f2c_A* 3f2d_A*
Length = 1041
Score = 28.4 bits (64), Expect = 3.2
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 162 GHRMIALKKHLVVFGGFHDNLREAKYYNDVHIFDLETY 199
GH IA+ H VV F + AK + I+ LE
Sbjct: 145 GHPAIAVTDHAVVQS-FPEAYSAAKKHGMKVIYGLEAN 181
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF,
cofilin, structural genomics, PSI, protein structure
initiative; 1.70A {Caenorhabditis elegans} SCOP:
b.69.4.1 b.69.4.1 PDB: 1pev_A
Length = 611
Score = 27.9 bits (63), Expect = 3.9
Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 17/86 (19%)
Query: 189 NDVHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSVKK-DVDKG-- 245
+ VH++ L + +++ + S +A + +G L++ S+ V V
Sbjct: 470 SKVHVYKLSGASVSEVKTIVHPAEITS---VAFSNNGAFLVATDQSR-KVIPYSVANNFE 525
Query: 246 IVHTDTFL----------LTPDSKTL 261
+ HT+++ +PD+ L
Sbjct: 526 LAHTNSWTFHTAKVACVSWSPDNVRL 551
Score = 27.2 bits (61), Expect = 7.4
Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 191 VHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGY 233
V ++++ + I GA S + ++S G
Sbjct: 560 VIVWNMNKPSDHPIIIKGAHA--MSSVNSVIWLNETTIVSAGQ 600
>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum, ER-golgi transport, membrane,
mRNA transport; 4.00A {Saccharomyces cerevisiae}
Length = 753
Score = 27.6 bits (61), Expect = 4.9
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 191 VHIFDLETYAWKKIEPLGAGPAPRSGCQMAATPDGKILISGGY 233
+ IF++E K I+ L P A G IL S Y
Sbjct: 33 IKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY 75
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.00A {Escherichia coli} SCOP:
b.69.11.1
Length = 343
Score = 27.3 bits (61), Expect = 5.5
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 203 KIEPLGAGPAPRSGCQMAATPDGKILISGGYSKQSV 238
+ P S ++ G+ + G Y+ +V
Sbjct: 73 ALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNV 108
>3iz6_J 40S ribosomal protein S20 (S10P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 128
Score = 26.1 bits (57), Expect = 7.0
Identities = 11/77 (14%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 18 EDIEKIVRDIEAEEKRKNKVIEKVVPEPTRRANFSFLAHP---DKDQLILFGGEFYDGQK 74
+++EK+ D+ K K+ ++ V PT+ + + P + F +
Sbjct: 39 KNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVI 98
Query: 75 FVFGSPKALDHLILMNL 91
+ S + + + +
Sbjct: 99 DLVSSADVVKQITSITI 115
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.434
Gapped
Lambda K H
0.267 0.0698 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,340,231
Number of extensions: 258698
Number of successful extensions: 917
Number of sequences better than 10.0: 1
Number of HSP's gapped: 813
Number of HSP's successfully gapped: 87
Length of query: 265
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 173
Effective length of database: 4,133,061
Effective search space: 715019553
Effective search space used: 715019553
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.4 bits)