BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14335
         (273 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3L4G|B Chain B, Crystal Structure Of Homo Sapiens Cytoplasmic
           Phenylalanyl-T Synthetase
 pdb|3L4G|D Chain D, Crystal Structure Of Homo Sapiens Cytoplasmic
           Phenylalanyl-T Synthetase
 pdb|3L4G|F Chain F, Crystal Structure Of Homo Sapiens Cytoplasmic
           Phenylalanyl-T Synthetase
 pdb|3L4G|H Chain H, Crystal Structure Of Homo Sapiens Cytoplasmic
           Phenylalanyl-T Synthetase
 pdb|3L4G|J Chain J, Crystal Structure Of Homo Sapiens Cytoplasmic
           Phenylalanyl-T Synthetase
 pdb|3L4G|L Chain L, Crystal Structure Of Homo Sapiens Cytoplasmic
           Phenylalanyl-T Synthetase
 pdb|3L4G|N Chain N, Crystal Structure Of Homo Sapiens Cytoplasmic
           Phenylalanyl-T Synthetase
 pdb|3L4G|P Chain P, Crystal Structure Of Homo Sapiens Cytoplasmic
           Phenylalanyl-T Synthetase
          Length = 589

 Score =  225 bits (574), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 113/190 (59%), Positives = 133/190 (70%), Gaps = 28/190 (14%)

Query: 30  TDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCLEG 89
           TDEEF  LCF FGLELDE+TSEK+IISKEQG   + GAS+ V+Y+IDVPANRYDLLCLEG
Sbjct: 20  TDEEFDELCFEFGLELDEITSEKEIISKEQGNVKAAGASDVVLYKIDVPANRYDLLCLEG 79

Query: 90  LYNGLM----------------------------TSQIRPHAVAAVLRNITLNEERYASF 121
           L  GL                             T++IRP AVAAVLRNI   ++RY SF
Sbjct: 80  LVRGLQVFKERIKAPVYKRVMPDGKIQKLIITEETAKIRPFAVAAVLRNIKFTKDRYDSF 139

Query: 122 IELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMD 181
           IELQ+KLHQNICRKR LVAIGTHDLDT+ GPF Y AK PS+I+F+PLN+TKEY+  E+M+
Sbjct: 140 IELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKTKEYTACELMN 199

Query: 182 LYATSQIRPH 191
           +Y T     H
Sbjct: 200 IYKTDNHLKH 209


>pdb|2CXI|A Chain A, Crystal Structure Of An N-Terminal Fragment Of The
           Phenylalanyl-Trna Synthetase Beta-Subunit From
           Pyrococcus Horikoshii
 pdb|2CXI|B Chain B, Crystal Structure Of An N-Terminal Fragment Of The
           Phenylalanyl-Trna Synthetase Beta-Subunit From
           Pyrococcus Horikoshii
 pdb|2CXI|C Chain C, Crystal Structure Of An N-Terminal Fragment Of The
           Phenylalanyl-Trna Synthetase Beta-Subunit From
           Pyrococcus Horikoshii
          Length = 348

 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 99  IRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAK 158
           IRP+ V A++  + L+E+  +  I+LQ+K+     R+R  VAIG  D D IK P  Y A 
Sbjct: 100 IRPYGVYAIVEGLRLDEDSLSQXIQLQEKIALTFGRRRREVAIGIFDFDKIKPPIYYKAA 159

Query: 159 PPSEIRFQPLN 169
             +E +F PL 
Sbjct: 160 EKTE-KFAPLG 169



 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 188 IRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAK 247
           IRP+ V A++  + L+E+  +  I+LQ+K+     R+R  VAIG  D D IK P  Y A 
Sbjct: 100 IRPYGVYAIVEGLRLDEDSLSQXIQLQEKIALTFGRRRREVAIGIFDFDKIKPPIYYKAA 159

Query: 248 PPSEIRFQPLN 258
             +E +F PL 
Sbjct: 160 EKTE-KFAPLG 169


>pdb|3O63|A Chain A, Crystal Structure Of Thiamin Phosphate Synthase From
           Mycobacterium Tuberculosis
 pdb|3O63|B Chain B, Crystal Structure Of Thiamin Phosphate Synthase From
           Mycobacterium Tuberculosis
          Length = 243

 Score = 31.6 bits (70), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 8/90 (8%)

Query: 154 IYDAKPPSEIRFQPLNQTKEYSGTEIMDLYATSQIRPHAVAAVLRNITLNEERYASFIEL 213
           + D   P E+RF PL    E +  EI+   A +  R  A+ AV     +     A  + L
Sbjct: 62  LRDKGSPGELRFGPLQARDELAACEIL---ADAAHRYGALFAVNDRADIARAAGADVLHL 118

Query: 214 -QDKLHQNICRK----RTLVAIGTHDLDTI 238
            Q  L  N+ R+     TL+   THD D +
Sbjct: 119 GQRDLPVNVARQILAPDTLIGRSTHDPDQV 148


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.135    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,179,613
Number of Sequences: 62578
Number of extensions: 282297
Number of successful extensions: 589
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 582
Number of HSP's gapped (non-prelim): 9
length of query: 273
length of database: 14,973,337
effective HSP length: 97
effective length of query: 176
effective length of database: 8,903,271
effective search space: 1566975696
effective search space used: 1566975696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)