Query psy14335
Match_columns 273
No_of_seqs 246 out of 735
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 17:12:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14335.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14335hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l4g_B Phenylalanyl-tRNA synth 100.0 5.8E-41 2E-45 335.2 18.0 185 9-199 5-225 (589)
2 2cxi_A Phenylalanyl-tRNA synth 100.0 4.7E-35 1.6E-39 276.8 14.7 150 9-185 5-185 (348)
3 2cxi_A Phenylalanyl-tRNA synth 99.7 1.7E-17 5.8E-22 156.8 8.6 86 186-272 98-183 (348)
4 3l4g_B Phenylalanyl-tRNA synth 99.7 3.7E-17 1.3E-21 163.4 6.8 87 186-272 115-201 (589)
5 3pco_B Phenylalanyl-tRNA synth 99.4 1.7E-13 5.7E-18 141.5 7.0 98 70-171 155-293 (795)
6 2rhq_B Phenylalanyl-tRNA synth 99.4 2.4E-13 8.1E-18 140.3 7.1 104 70-178 157-305 (795)
7 1b7y_B Phers, protein (phenyla 99.2 2.1E-11 7.2E-16 125.8 7.0 106 69-179 152-298 (785)
8 1b7y_B Phers, protein (phenyla 97.4 4.3E-05 1.5E-09 79.0 2.1 76 186-266 207-296 (785)
9 3pco_B Phenylalanyl-tRNA synth 97.3 7.4E-05 2.5E-09 77.3 3.1 71 186-260 210-293 (795)
10 2rhq_B Phenylalanyl-tRNA synth 97.3 8.7E-05 3E-09 76.7 3.4 75 186-265 214-303 (795)
11 3hj7_A TRNA(Ile)-lysidine synt 87.3 0.45 1.5E-05 39.3 3.6 39 145-184 46-84 (142)
12 3hj7_A TRNA(Ile)-lysidine synt 79.9 1.2 4E-05 36.8 3.2 36 234-270 46-81 (142)
13 1p35_A P35; cell death, baculo 44.6 60 0.0021 29.7 7.3 49 152-213 167-215 (299)
14 3twe_A Alpha4H; unknown functi 23.3 68 0.0023 19.0 2.6 16 115-130 4-19 (27)
No 1
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=100.00 E-value=5.8e-41 Score=335.19 Aligned_cols=185 Identities=62% Similarity=1.017 Sum_probs=169.5
Q ss_pred ccchhhHHhhhhhHHHhcCCCChHHHHHHhhhhCccccccchhhhhhhhhccCCCCCCCCCceEEEEecCCCCcccchhh
Q psy14335 9 DLRLSDLLRTLVLPSTVAGHGTDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCLE 88 (273)
Q Consensus 9 ~~~~~~l~~~~~l~~~lG~~~~~ee~~~llf~~g~Eld~~~~e~~~~~~~~~~~~~~~~~~~~~~kiEi~~nRpDLls~e 88 (273)
.++++||.++ +|++||++||+++||+||+|+|++++|+++..++||.+++.+.+++.+++||++|||||+||++
T Consensus 5 ~v~~~~l~~~------~g~~~~~~e~~~~~~~~g~e~d~~~~~~~~~~~~~~~~~~~~~~~d~i~ei~itpNR~D~ls~~ 78 (589)
T 3l4g_B 5 SVKRDLLFQA------LGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNVKAAGASDVVLYKIDVPANRYDLLCLE 78 (589)
T ss_dssp EEEHHHHHHH------HTSCCCTTHHHHHHHHTTCEEEEEEEHHHHHTTTSSCCCCCSSSSSEEEEEECCTTCSTTSSHH
T ss_pred EECHHHHHHH------HCCCCCHHHHHHHHHhcCCccccccccchhhhhcccccccccCCCCeEEEEecCCChhHHhHHH
Confidence 5678888888 9999999999999999999999999999999999999998888899999999999999999999
Q ss_pred hhhhhh----------------------------ccCCCCceeEEEEEecCcCCHHHHHHHHHHHHHHHHHhhhccceee
Q psy14335 89 GLYNGL----------------------------MTSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVA 140 (273)
Q Consensus 89 GlaraL----------------------------~v~~iRPyi~~avvr~v~l~~~~lk~~I~~QeKLH~~igrkR~~va 140 (273)
||||.+ +..+.|||.+|+|+|||++++++++|++.+|+|||+++||+|++|+
T Consensus 79 GiARela~~~~~~~~p~~~~~~~~~~~~~i~v~~~~~~~cp~y~~~vi~~V~~~~~~~~Sp~wlq~rL~~~~~r~~~~Vd 158 (589)
T 3l4g_B 79 GLVRGLQVFKERIKAPVYKRVMPDGKIQKLIITEETAKIRPFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVA 158 (589)
T ss_dssp HHHHHHHHHTTSSCCCCCEEECCSSCCCEEEECTTTTTTSCEEEEEEECCBCCCHHHHHHHHHHHHHTTTTTTTTTTSEE
T ss_pred HHHHHHHHhcCCCCCCCccccCCCCCceeEEEeecCcccCCeEEEEEEECcCcCccccCCHHHHHHHHHHccCCCceEEe
Confidence 999988 1246899999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCCCeEEeecCCCCceeeeCCCCCcccHHHHHHhhcc-cccccc-------eeeEEEEe
Q psy14335 141 IGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMDLYAT-SQIRPH-------AVAAVLRN 199 (273)
Q Consensus 141 IGtHDld~i~~P~~Y~a~~p~~i~fvPL~~~~e~t~~elLe~~ek-~~IRPy-------iv~pVLr~ 199 (273)
|||||+|+|++|++|++.+|++++|+||+++++||+.++|+.|.+ .++++| ..+||+.|
T Consensus 159 Itn~Dldki~g~~~~~~~~~~~~~f~~Ld~~~~l~~~~l~~~~~~~~~~~~y~~ii~~~~~~~vI~D 225 (589)
T 3l4g_B 159 IGTHDLDTLSGPFTYTAKRPSDIKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYD 225 (589)
T ss_dssp EEEEEGGGCCSCEEEEEECSTTCEECBTTCSSCEEHHHHHHHSTTCTTTTTTTTTTCCSSCEEEEEC
T ss_pred hhhhhHHHcCCCeEEEEeCCCCcEEEECCCceEecHHHhhhhhcccccccccceecccCCCcEEEEE
Confidence 999999999999999999999999999999999999999998876 554443 56677654
No 2
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=4.7e-35 Score=276.80 Aligned_cols=150 Identities=33% Similarity=0.474 Sum_probs=140.1
Q ss_pred ccchhhHHhhhhhHHHhcCCCChHHHHHHhhhhCccccccchhhhhhhhhccCCCCCCCCCceEEEEecC-----CCCcc
Q psy14335 9 DLRLSDLLRTLVLPSTVAGHGTDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVP-----ANRYD 83 (273)
Q Consensus 9 ~~~~~~l~~~~~l~~~lG~~~~~ee~~~llf~~g~Eld~~~~e~~~~~~~~~~~~~~~~~~~~~~kiEi~-----~nRpD 83 (273)
.+++++|.++ +|++||++||++.||++|.|+++..++ +++||++ |||||
T Consensus 5 ~v~~~~L~~~------lg~~~~~~el~~~~~~~G~~~~~~~d~--------------------iiei~it~~~~~pNR~D 58 (348)
T 2cxi_A 5 DVSKSDLERL------IGRSFSIEEWEDLVLYAKCELDDVWEE--------------------NGKVYFKLDSKDTNRPD 58 (348)
T ss_dssp EEEHHHHHHH------HTSCCCHHHHHHHHHHTTEEEEEEEEE--------------------TTEEEEEEEECCTTCGG
T ss_pred EECHHHHHHH------HCCCCCHHHHHhhhhhccCCHHHcCce--------------------EEEEEccCCCCCCChHH
Confidence 5678888888 999999999999999999999987622 5999999 99999
Q ss_pred cchhhhhhhhh--------------------------ccCCCCceeEEEEEecCcCCHHHHHHHHHHHHHHHHHhhhccc
Q psy14335 84 LLCLEGLYNGL--------------------------MTSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRT 137 (273)
Q Consensus 84 Lls~eGlaraL--------------------------~v~~iRPyi~~avvr~v~l~~~~lk~~I~~QeKLH~~igrkR~ 137 (273)
+||++||||.| .+.+.|||.+|+++|||++++++|+|++.+|+|||+++||+|+
T Consensus 59 ~lS~~GiARelaa~~~~~~~~p~~~~~~~~~~v~v~~~~~~~~p~~~~~vi~~v~~~~~~~~sp~wlq~rL~~~~G~~r~ 138 (348)
T 2cxi_A 59 LWSAEGVARQIKWALGIEKGLPKYEVKKSNVTVYVDEKLKDIRPYGVYAIVEGLRLDEDSLSQMIQLQEKIALTFGRRRR 138 (348)
T ss_dssp GSSHHHHHHHHHHHTTSSCSSCCCCEEEEEEEEEECGGGTTTSCEEEEEEEESCCCCHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred HhHHHHHHHHHHHHhCCCCCCCCccccccceEEEECCCccccCCeEEEEEEECcccCcCCCCCHHHHHHHHHHHhCCccc
Confidence 99999999998 1227899999999999999999999999999999999999999
Q ss_pred eeeeeeecCCCCCCCeEEeecCCCCceeeeCCCCCcccHHHHHHhhcc
Q psy14335 138 LVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMDLYAT 185 (273)
Q Consensus 138 ~vaIGtHDld~i~~P~~Y~a~~p~~i~fvPL~~~~e~t~~elLe~~ek 185 (273)
+|+||+||+|+|++||+|++..|.+ +|+||+..++++..|+|+.|++
T Consensus 139 ~Vpi~a~Dldki~g~i~vr~a~~ge-~f~~L~~~~~l~~~e~~~~~~~ 185 (348)
T 2cxi_A 139 EVAIGIFDFDKIKPPIYYKAAEKTE-KFAPLGYKEEMTLEEILEKHEK 185 (348)
T ss_dssp SEEEEEEEGGGSCSSEEEEEECTTC-EECBTTCSSCEEHHHHHHHSHH
T ss_pred CCcccccCHHHCCCCeEEEEcCCCC-EEEECCCccccCHHHhhhhhcc
Confidence 9999999999999999999999999 9999999889999999999986
No 3
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii}
Probab=99.70 E-value=1.7e-17 Score=156.83 Aligned_cols=86 Identities=37% Similarity=0.606 Sum_probs=83.0
Q ss_pred cccccceeeEEEEecccCHHHHHHHHHHHHHHHHHhhcccceeEEeeccCCCCCCCeeeeccCCCCceeeeCCCCCccCH
Q psy14335 186 SQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYTG 265 (273)
Q Consensus 186 ~~IRPyiv~pVLr~v~l~~~~lk~fI~~QeKLH~~igrkR~~~aIGtHDldki~~P~~Y~a~~p~~i~f~PL~~~~e~t~ 265 (273)
..++||.++.+++||++++++|++++.+|+|||+++||+|++|+||+||+|+|++||+|++.+|.+ +|+||+..++++.
T Consensus 98 ~~~~p~~~~~vi~~v~~~~~~~~sp~wlq~rL~~~~G~~r~~Vpi~a~Dldki~g~i~vr~a~~ge-~f~~L~~~~~l~~ 176 (348)
T 2cxi_A 98 KDIRPYGVYAIVEGLRLDEDSLSQMIQLQEKIALTFGRRRREVAIGIFDFDKIKPPIYYKAAEKTE-KFAPLGYKEEMTL 176 (348)
T ss_dssp TTTSCEEEEEEEESCCCCHHHHHHHHHHHHHHHHTTTTTTTSEEEEEEEGGGSCSSEEEEEECTTC-EECBTTCSSCEEH
T ss_pred cccCCeEEEEEEECcccCcCCCCCHHHHHHHHHHHhCCcccCCcccccCHHHCCCCeEEEEcCCCC-EEEECCCccccCH
Confidence 478999999999999999999999999999999999999999999999999999999999999999 9999999889999
Q ss_pred HHHhhhc
Q psy14335 266 TEIMDLY 272 (273)
Q Consensus 266 ~eil~~~ 272 (273)
.|+++.|
T Consensus 177 ~e~~~~~ 183 (348)
T 2cxi_A 177 EEILEKH 183 (348)
T ss_dssp HHHHHHS
T ss_pred HHhhhhh
Confidence 9999876
No 4
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=99.67 E-value=3.7e-17 Score=163.43 Aligned_cols=87 Identities=71% Similarity=1.190 Sum_probs=84.2
Q ss_pred cccccceeeEEEEecccCHHHHHHHHHHHHHHHHHhhcccceeEEeeccCCCCCCCeeeeccCCCCceeeeCCCCCccCH
Q psy14335 186 SQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYTG 265 (273)
Q Consensus 186 ~~IRPyiv~pVLr~v~l~~~~lk~fI~~QeKLH~~igrkR~~~aIGtHDldki~~P~~Y~a~~p~~i~f~PL~~~~e~t~ 265 (273)
..++||.++.|++||++++++++|++.||+|||++.||+|++|+||+||+|+|++|++|.+.+|++++|+||+.+++||+
T Consensus 115 ~~~cp~y~~~vi~~V~~~~~~~~Sp~wlq~rL~~~~~r~~~~VdItn~Dldki~g~~~~~~~~~~~~~f~~Ld~~~~l~~ 194 (589)
T 3l4g_B 115 AKIRPFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKTKEYTA 194 (589)
T ss_dssp TTTSCEEEEEEECCBCCCHHHHHHHHHHHHHTTTTTTTTTTSEEEEEEEGGGCCSCEEEEEECSTTCEECBTTCSSCEEH
T ss_pred cccCCeEEEEEEECcCcCccccCCHHHHHHHHHHccCCCceEEehhhhhHHHcCCCeEEEEeCCCCcEEEECCCceEecH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred HHHhhhc
Q psy14335 266 TEIMDLY 272 (273)
Q Consensus 266 ~eil~~~ 272 (273)
.+++++|
T Consensus 195 ~~l~~~~ 201 (589)
T 3l4g_B 195 CELMNIY 201 (589)
T ss_dssp HHHHHHS
T ss_pred HHhhhhh
Confidence 9998876
No 5
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=99.41 E-value=1.7e-13 Score=141.51 Aligned_cols=98 Identities=22% Similarity=0.300 Sum_probs=88.3
Q ss_pred ceEEEEecCCCCcccchhhhhhhhh----------------------------ccCCCCceeEEEEEecCcCCHHHHHHH
Q psy14335 70 DVIYRIDVPANRYDLLCLEGLYNGL----------------------------MTSQIRPHAVAAVLRNITLNEERYASF 121 (273)
Q Consensus 70 ~~~~kiEi~~nRpDLls~eGlaraL----------------------------~v~~iRPyi~~avvr~v~l~~~~lk~~ 121 (273)
+.++.|+++|||||.||++||||.| +..+.+|+.+|+++|||+++..+ .
T Consensus 155 D~viei~iTpNR~D~lS~~GiARElaa~~~~~~~~p~~~~~~~~~~~~~~v~v~~~~~cp~y~~~vi~~V~~~~~S---P 231 (795)
T 3pco_B 155 DNTIEISVTPNRADCLGIIGVARDVAVLNQLPLVQPEIVPVGATIDDTLPITVEAPEACPRYLGRVVKGINVKAPT---P 231 (795)
T ss_dssp CEEEEEECCTTCCSCSSHHHHHHHHHHHHTCCCCCCCCCCCCCCSCCCCCCCCSCTTTCSEEEEEEEESCCTTCCC---C
T ss_pred ceeEEeecCCCcHHHhHHHHHHHHHHHHhCCCCCCCcccccccCCCcceEEEecCcccCceEEEEEEEcccCCCCC---H
Confidence 4689999999999999999999988 12346999999999999997643 5
Q ss_pred HHHHHHHHHHhhhcccee-------------eeeeecCCCCCCCeEEeecCCCCceeeeCCCC
Q psy14335 122 IELQDKLHQNICRKRTLV-------------AIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQT 171 (273)
Q Consensus 122 I~~QeKLH~~igrkR~~v-------------aIGtHDld~i~~P~~Y~a~~p~~i~fvPL~~~ 171 (273)
+.+|+|||++-+|.+..+ .||.||+|+|++|++|+...+.+ +|+||+..
T Consensus 232 ~wlq~rL~~~g~r~in~vVDitNyv~le~GqPlhafD~dki~g~i~vr~a~~ge-~~~~Ld~~ 293 (795)
T 3pco_B 232 LWMKEKLRRCGIRSIDAVVDVTNYVLLELGQPMHAFDKDRIEGGIVVRMAKEGE-TLVLLDGT 293 (795)
T ss_dssp THHHHHHHHTTCCCCCSHHHHHHHHHHHHSCCEEEEEGGGCCSCCEEECCCSSC-CEEETTTE
T ss_pred HHHHHHHHHcCCCCccHHHHHHHHHHHHhCCCCccccHhHCCCCeEEEEcCCCC-EEEecCCc
Confidence 889999999999999988 99999999999999999999988 99999985
No 6
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=99.39 E-value=2.4e-13 Score=140.30 Aligned_cols=104 Identities=22% Similarity=0.291 Sum_probs=88.2
Q ss_pred ceEEEEecCCCCcccchhhhhhhhh-------------c-----------------cCCCCceeEEEEEecCcCCHHHHH
Q psy14335 70 DVIYRIDVPANRYDLLCLEGLYNGL-------------M-----------------TSQIRPHAVAAVLRNITLNEERYA 119 (273)
Q Consensus 70 ~~~~kiEi~~nRpDLls~eGlaraL-------------~-----------------v~~iRPyi~~avvr~v~l~~~~lk 119 (273)
+.+++|+++|||||.||++||||.| . ....||+.+|+++|||++. .
T Consensus 157 D~viei~iTpNR~D~lS~~GiARelaa~~~~~~~~p~~~~~~~~~~~~~~~~v~v~~~~~cp~y~~~~i~~v~~~----~ 232 (795)
T 2rhq_B 157 DQVMEFDLTPNRADALSMVGTAYEVAALYQTEMTKPETQSNETSESATNELSVTIDNPEKVPYYSARVVKNVSIE----P 232 (795)
T ss_dssp CEEEEEECCGGGGGGSSHHHHHHHHHHHHTCCBCCCCCCCCCCSCBGGGTCEEEESCTTTCSEEEEEEEECCCCC----C
T ss_pred ceEEEEeCCCChHHHhHHHHHHHHHHHHhCCCCCCCCccccccccCCCCceEEEecCcccCceEEEEEEECCCCC----C
Confidence 4689999999999999999999988 1 1246899999999999994 4
Q ss_pred HHHHHHHHHHHHhhhcccee-------------eeeeecCCCCC-CCeEEeecCCCCceeeeCCCC-CcccHHH
Q psy14335 120 SFIELQDKLHQNICRKRTLV-------------AIGTHDLDTIK-GPFIYDAKPPSEIRFQPLNQT-KEYSGTE 178 (273)
Q Consensus 120 ~~I~~QeKLH~~igrkR~~v-------------aIGtHDld~i~-~P~~Y~a~~p~~i~fvPL~~~-~e~t~~e 178 (273)
+.+.+|+|||++-+|.++.+ .||.||+|+|+ ++++|+...+.+ +|+||+.. .+++..+
T Consensus 233 sp~~l~~rL~~~g~r~in~vVDitNyv~le~G~Plha~D~dki~~g~i~vr~a~~ge-~~~~L~~~~~~l~~~~ 305 (795)
T 2rhq_B 233 SPIWVQARLIKAGIRPINNVVDISNYVLLEYGQPLHMFDQDHIGSKEIVVRQAKDEE-TMTTLDNNERKLVDTD 305 (795)
T ss_dssp CCHHHHHHHHHTTCCCCCHHHHHHHHHHHHHSCCCEEEEGGGSSSSEEEEEECCTTC-EEEBTTSCEEECCTTC
T ss_pred CHHHHHHHHHHCCCCCccHHHHHHHHHHHHhCCCcccccHhHCCCCceEEEEcCCCC-EEEecCCceeecCCCc
Confidence 67889999999966877766 88999999999 999999999888 99999974 4444333
No 7
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=99.17 E-value=2.1e-11 Score=125.78 Aligned_cols=106 Identities=22% Similarity=0.261 Sum_probs=89.3
Q ss_pred CceEEEEecCCCCcccchhhhhhhhhc---------------------------cCCCCceeEEEEEecCcCCHHHHHHH
Q psy14335 69 EDVIYRIDVPANRYDLLCLEGLYNGLM---------------------------TSQIRPHAVAAVLRNITLNEERYASF 121 (273)
Q Consensus 69 ~~~~~kiEi~~nRpDLls~eGlaraL~---------------------------v~~iRPyi~~avvr~v~l~~~~lk~~ 121 (273)
++.++.|+++|||+|.||+.||||-++ ....+|+.+|+++|||++. .+.
T Consensus 152 ~D~viei~iTpNR~D~ls~~GiARE~aa~~~~~~~p~~~~~~~~~~~~~~v~i~~~~~cp~y~~~~i~~v~~~----~Sp 227 (785)
T 1b7y_B 152 EEVVLDLEVTPNRPDALGLLGLARDLHALGYALVEPEAALKAEALPLPFALKVEDPEGAPHFTLGYAFGLRVA----PSP 227 (785)
T ss_dssp CCEEEECCCCTTCGGGGSHHHHHHHHHHTTCCCCCCCCCCCEECCCCSSEEEESCTTTCSEEEEEEEESCCCC----CCC
T ss_pred CceEEEecCCCChHHHhHHHHHHHHHHhcCCCCCCCCccccccccCCceEEEecCcccCceEEEEEEECCCCC----CCH
Confidence 567899999999999999999999661 1145899999999999994 467
Q ss_pred HHHHHHHHHHhhhcccee-------------eeeeecCCCCCCCeEEeecCCCCceeeeCCCC-CcccHHHH
Q psy14335 122 IELQDKLHQNICRKRTLV-------------AIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQT-KEYSGTEI 179 (273)
Q Consensus 122 I~~QeKLH~~igrkR~~v-------------aIGtHDld~i~~P~~Y~a~~p~~i~fvPL~~~-~e~t~~el 179 (273)
+.+|+|||++-+|.+..+ .||.||+|+|+++++|+...+.+ +|+||+.. .+++..++
T Consensus 228 ~wl~~rL~~~g~r~in~vVDitNyv~le~G~Plha~D~dki~g~i~vr~a~~ge-~~~~Ld~~~~~l~~~~l 298 (785)
T 1b7y_B 228 LWMQRALFAAGMRPINNVVDVTNYVMLERAQPMHAFDLRFVGEGIAVRRAREGE-RLKTLDGVERTLHPEDL 298 (785)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHHHSSCCCEEEEGGGTBTEEEEEECCTTC-EEEBTTSCEEECCTTCE
T ss_pred HHHHHHHHHCCCCCccHHHHHHHHHHHHhCCCcccccHhHCCCCeEEEEcCCCC-EEEeCCCceeecCCCcE
Confidence 899999999966778777 89999999999999999999988 99999974 44544443
No 8
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=97.40 E-value=4.3e-05 Score=78.98 Aligned_cols=76 Identities=16% Similarity=0.140 Sum_probs=64.0
Q ss_pred cccccceeeEEEEecccCHHHHHHHHHHHHHHHHHhhccccee-------------EEeeccCCCCCCCeeeeccCCCCc
Q psy14335 186 SQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLV-------------AIGTHDLDTIKGPFIYDAKPPSEI 252 (273)
Q Consensus 186 ~~IRPyiv~pVLr~v~l~~~~lk~fI~~QeKLH~~igrkR~~~-------------aIGtHDldki~~P~~Y~a~~p~~i 252 (273)
....|+..+.+++||++. .+.+.+|+|||+.-+|.+..+ .||.||+|+|++++.|+...+.+
T Consensus 207 ~~~cp~y~~~~i~~v~~~----~Sp~wl~~rL~~~g~r~in~vVDitNyv~le~G~Plha~D~dki~g~i~vr~a~~ge- 281 (785)
T 1b7y_B 207 PEGAPHFTLGYAFGLRVA----PSPLWMQRALFAAGMRPINNVVDVTNYVMLERAQPMHAFDLRFVGEGIAVRRAREGE- 281 (785)
T ss_dssp TTTCSEEEEEEEESCCCC----CCCHHHHHHHHHTTCCCCCHHHHHHHHHHHHSSCCCEEEEGGGTBTEEEEEECCTTC-
T ss_pred cccCceEEEEEEECCCCC----CCHHHHHHHHHHCCCCCccHHHHHHHHHHHHhCCCcccccHhHCCCCeEEEEcCCCC-
Confidence 357899999999999994 567899999999966767666 89999999999999999999988
Q ss_pred eeeeCCCC-CccCHH
Q psy14335 253 RFQPLNQT-KEYTGT 266 (273)
Q Consensus 253 ~f~PL~~~-~e~t~~ 266 (273)
+|+||+.. .+++..
T Consensus 282 ~~~~Ld~~~~~l~~~ 296 (785)
T 1b7y_B 282 RLKTLDGVERTLHPE 296 (785)
T ss_dssp EEEBTTSCEEECCTT
T ss_pred EEEeCCCceeecCCC
Confidence 99999964 444433
No 9
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=97.35 E-value=7.4e-05 Score=77.34 Aligned_cols=71 Identities=20% Similarity=0.279 Sum_probs=63.8
Q ss_pred cccccceeeEEEEecccCHHHHHHHHHHHHHHHHHhhccccee-------------EEeeccCCCCCCCeeeeccCCCCc
Q psy14335 186 SQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLV-------------AIGTHDLDTIKGPFIYDAKPPSEI 252 (273)
Q Consensus 186 ~~IRPyiv~pVLr~v~l~~~~lk~fI~~QeKLH~~igrkR~~~-------------aIGtHDldki~~P~~Y~a~~p~~i 252 (273)
...+|+..+.+++||+++..+ .+.+|++||+.-+|.+..+ .|+.||+|+|++|++|+...+.+
T Consensus 210 ~~~cp~y~~~vi~~V~~~~~S---P~wlq~rL~~~g~r~in~vVDitNyv~le~GqPlhafD~dki~g~i~vr~a~~ge- 285 (795)
T 3pco_B 210 PEACPRYLGRVVKGINVKAPT---PLWMKEKLRRCGIRSIDAVVDVTNYVLLELGQPMHAFDKDRIEGGIVVRMAKEGE- 285 (795)
T ss_dssp TTTCSEEEEEEEESCCTTCCC---CTHHHHHHHHTTCCCCCSHHHHHHHHHHHHSCCEEEEEGGGCCSCCEEECCCSSC-
T ss_pred cccCceEEEEEEEcccCCCCC---HHHHHHHHHHcCCCCccHHHHHHHHHHHHhCCCCccccHhHCCCCeEEEEcCCCC-
Confidence 456899999999999997543 5899999999999999877 99999999999999999999988
Q ss_pred eeeeCCCC
Q psy14335 253 RFQPLNQT 260 (273)
Q Consensus 253 ~f~PL~~~ 260 (273)
+|+||+..
T Consensus 286 ~~~~Ld~~ 293 (795)
T 3pco_B 286 TLVLLDGT 293 (795)
T ss_dssp CEEETTTE
T ss_pred EEEecCCc
Confidence 99999975
No 10
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=97.34 E-value=8.7e-05 Score=76.72 Aligned_cols=75 Identities=20% Similarity=0.244 Sum_probs=63.8
Q ss_pred cccccceeeEEEEecccCHHHHHHHHHHHHHHHHHhhccccee-------------EEeeccCCCCC-CCeeeeccCCCC
Q psy14335 186 SQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLV-------------AIGTHDLDTIK-GPFIYDAKPPSE 251 (273)
Q Consensus 186 ~~IRPyiv~pVLr~v~l~~~~lk~fI~~QeKLH~~igrkR~~~-------------aIGtHDldki~-~P~~Y~a~~p~~ 251 (273)
...+|+..+.+++||++. .+.+.+|+|||+.-+|.++.+ .||.||+|+|+ ++++|+...+.+
T Consensus 214 ~~~cp~y~~~~i~~v~~~----~sp~~l~~rL~~~g~r~in~vVDitNyv~le~G~Plha~D~dki~~g~i~vr~a~~ge 289 (795)
T 2rhq_B 214 PEKVPYYSARVVKNVSIE----PSPIWVQARLIKAGIRPINNVVDISNYVLLEYGQPLHMFDQDHIGSKEIVVRQAKDEE 289 (795)
T ss_dssp TTTCSEEEEEEEECCCCC----CCCHHHHHHHHHTTCCCCCHHHHHHHHHHHHHSCCCEEEEGGGSSSSEEEEEECCTTC
T ss_pred cccCceEEEEEEECCCCC----CCHHHHHHHHHHCCCCCccHHHHHHHHHHHHhCCCcccccHhHCCCCceEEEEcCCCC
Confidence 468999999999999994 467889999999955777666 88999999999 999999999888
Q ss_pred ceeeeCCCC-CccCH
Q psy14335 252 IRFQPLNQT-KEYTG 265 (273)
Q Consensus 252 i~f~PL~~~-~e~t~ 265 (273)
+|+||+.. .+++.
T Consensus 290 -~~~~L~~~~~~l~~ 303 (795)
T 2rhq_B 290 -TMTTLDNNERKLVD 303 (795)
T ss_dssp -EEEBTTSCEEECCT
T ss_pred -EEEecCCceeecCC
Confidence 99999964 34443
No 11
>3hj7_A TRNA(Ile)-lysidine synthase; helix-turn-helix, pseudo-knot, ATP-binding, ligase, nucleoti binding, tRNA processing; 2.20A {Geobacillus kaustophilus}
Probab=87.25 E-value=0.45 Score=39.30 Aligned_cols=39 Identities=13% Similarity=0.045 Sum_probs=36.3
Q ss_pred cCCCCCCCeEEeecCCCCceeeeCCCCCcccHHHHHHhhc
Q psy14335 145 DLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMDLYA 184 (273)
Q Consensus 145 Dld~i~~P~~Y~a~~p~~i~fvPL~~~~e~t~~elLe~~e 184 (273)
|+|+|++|++++...+.+ +|.|+++....++++++....
T Consensus 46 D~dki~~pL~vR~r~~GD-r~~p~g~~g~KkLKklf~d~k 84 (142)
T 3hj7_A 46 DPASVSLPLRVRTRRRGD-RMVLKGTGGTKKLKEIFIEAK 84 (142)
T ss_dssp CGGGSCSSEEEECCCTTC-EEEBSTTCCEEEHHHHHHHTT
T ss_pred CHHHCCCCEEEEecCCCC-EEEECCCCCCccHHHHHHHcC
Confidence 999999999999999998 999999988899999998873
No 12
>3hj7_A TRNA(Ile)-lysidine synthase; helix-turn-helix, pseudo-knot, ATP-binding, ligase, nucleoti binding, tRNA processing; 2.20A {Geobacillus kaustophilus}
Probab=79.94 E-value=1.2 Score=36.77 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=32.8
Q ss_pred cCCCCCCCeeeeccCCCCceeeeCCCCCccCHHHHhh
Q psy14335 234 DLDTIKGPFIYDAKPPSEIRFQPLNQTKEYTGTEIMD 270 (273)
Q Consensus 234 Dldki~~P~~Y~a~~p~~i~f~PL~~~~e~t~~eil~ 270 (273)
|+|+|++|++++...+.+ +|.|+++....++++++.
T Consensus 46 D~dki~~pL~vR~r~~GD-r~~p~g~~g~KkLKklf~ 81 (142)
T 3hj7_A 46 DPASVSLPLRVRTRRRGD-RMVLKGTGGTKKLKEIFI 81 (142)
T ss_dssp CGGGSCSSEEEECCCTTC-EEEBSTTCCEEEHHHHHH
T ss_pred CHHHCCCCEEEEecCCCC-EEEECCCCCCccHHHHHH
Confidence 999999999999999998 899999887788888875
No 13
>1p35_A P35; cell death, baculovirus; 2.20A {Autographa californicanucleopolyhedrovirus} SCOP: b.28.1.1 PDB: 2fun_A 1i4e_A 1i3p_A 1i3s_A
Probab=44.63 E-value=60 Score=29.68 Aligned_cols=49 Identities=16% Similarity=0.376 Sum_probs=36.1
Q ss_pred CeEEeecCCCCceeeeCCCCCcccHHHHHHhhcccccccceeeEEEEecccCHHHHHHHHHH
Q psy14335 152 PFIYDAKPPSEIRFQPLNQTKEYSGTEIMDLYATSQIRPHAVAAVLRNITLNEERYASFIEL 213 (273)
Q Consensus 152 P~~Y~a~~p~~i~fvPL~~~~e~t~~elLe~~ek~~IRPyiv~pVLr~v~l~~~~lk~fI~~ 213 (273)
-|+|. |-....++||.-.-.- ..+=.|.+.++++||.++++.+..|+|.
T Consensus 167 sF~Y~--P~~gkVIVPl~HEInd-----------~g~y~ydV~A~V~~V~~~~~~~e~~vq~ 215 (299)
T 1p35_A 167 SFEYN--PIGNKVIVPFAHEIND-----------TGLYEYDVVAYVDSVQFDGEQFEEFVQS 215 (299)
T ss_dssp EEEEC--CSTTEEEECCCCCCCS-----------SSCEEEEEEEEECSBCCCHHHHHHHHHH
T ss_pred EEEEc--CcCCeEEEeeeEEEcC-----------CCceeeeeEEEEeeeeeccHHHHHHHHH
Confidence 35554 4456689999864311 2255688999999999999999988886
No 14
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=23.34 E-value=68 Score=19.01 Aligned_cols=16 Identities=31% Similarity=0.665 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14335 115 EERYASFIELQDKLHQ 130 (273)
Q Consensus 115 ~~~lk~~I~~QeKLH~ 130 (273)
++-|+.+-++||+|..
T Consensus 4 delykeledlqerlrk 19 (27)
T 3twe_A 4 DELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4679999999999864
Done!