RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14335
(273 letters)
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 589
Score = 171 bits (435), Expect = 1e-49
Identities = 111/195 (56%), Positives = 135/195 (69%), Gaps = 28/195 (14%)
Query: 30 TDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVPANRYDLLCLEG 89
TDEEF LCF FGLELDE+TSEK+IISKEQG + GAS+ V+Y+IDVPANRYDLLCLEG
Sbjct: 20 TDEEFDELCFEFGLELDEITSEKEIISKEQGNVKAAGASDVVLYKIDVPANRYDLLCLEG 79
Query: 90 L------YNGLM----------------------TSQIRPHAVAAVLRNITLNEERYASF 121
L + + T++IRP AVAAVLRNI ++RY SF
Sbjct: 80 LVRGLQVFKERIKAPVYKRVMPDGKIQKLIITEETAKIRPFAVAAVLRNIKFTKDRYDSF 139
Query: 122 IELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMD 181
IELQ+KLHQNICRKR LVAIGTHDLDT+ GPF Y AK PS+I+F+PLN+TKEY+ E+M+
Sbjct: 140 IELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKTKEYTACELMN 199
Query: 182 LYATSQIRPHAVAAV 196
+Y T H + +
Sbjct: 200 IYKTDNHLKHYLHII 214
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase,
ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus
horikoshii}
Length = 348
Score = 128 bits (324), Expect = 2e-35
Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 44/181 (24%)
Query: 30 TDEEFASLCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDVP-ANRYDLLCLE 88
+ EE+ L ELD+V E + V +++D NR DL E
Sbjct: 20 SIEEWEDLVLYAKCELDDVWEE----------------NGKVYFKLDSKDTNRPDLWSAE 63
Query: 89 GL------YNGL--------------------MTSQIRPHAVAAVLRNITLNEERYASFI 122
G+ G+ IRP+ V A++ + L+E+ + I
Sbjct: 64 GVARQIKWALGIEKGLPKYEVKKSNVTVYVDEKLKDIRPYGVYAIVEGLRLDEDSLSQMI 123
Query: 123 ELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMDL 182
+LQ+K+ R+R VAIG D D IK P Y A +E +F PL +E + EI++
Sbjct: 124 QLQEKIALTFGRRRREVAIGIFDFDKIKPPIYYKAAEKTE-KFAPLGYKEEMTLEEILEK 182
Query: 183 Y 183
+
Sbjct: 183 H 183
Score = 104 bits (260), Expect = 3e-26
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 185 TSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIY 244
IRP+ V A++ + L+E+ + I+LQ+K+ R+R VAIG D D IK P Y
Sbjct: 97 LKDIRPYGVYAIVEGLRLDEDSLSQMIQLQEKIALTFGRRRREVAIGIFDFDKIKPPIYY 156
Query: 245 DAKPPSEIRFQPLNQTKEYTGTEIMDLY 272
A +E +F PL +E T EI++ +
Sbjct: 157 KAAEKTE-KFAPLGYKEEMTLEEILEKH 183
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.2 bits (119), Expect = 4e-07
Identities = 46/299 (15%), Positives = 85/299 (28%), Gaps = 83/299 (27%)
Query: 40 AFGLELD--EVT-SEKQIISKEQGADNSKGASEDV--IYRI-----DVPANRYDLLCLEG 89
AF D +V K I+SKE+ D+ + + V R+ E
Sbjct: 28 AFVDNFDCKDVQDMPKSILSKEE-IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86
Query: 90 L---YNGLMTSQIRPHAVAAVLRNITLNEERYAS----------------------FIEL 124
L Y LM+ + R ++ Y +++L
Sbjct: 87 LRINYKFLMS------PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140
Query: 125 QDKL-----HQNI-------CRKRTLVAIGTHDLDTIKG-PF-IY------DAKPPSEI- 163
+ L +N+ K + F I+ P + +
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 164 RFQPLNQTKEYSGTEIMDLYATSQIRPHAVAAVLRNITLNEERYA-SFIELQDKLHQNI- 221
Q L + + T D + ++R H++ A LR + L + Y + L + +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLVLLNVQNAKAW 259
Query: 222 ------CRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKE-YTGTEIMDLYA 273
C + L+ T + D + L+ T E+ L
Sbjct: 260 NAFNLSC--KILLT--TRFKQ------VTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.002
Identities = 42/245 (17%), Positives = 69/245 (28%), Gaps = 70/245 (28%)
Query: 21 LPSTVAGHGTDEEFAS---LCFAFGLELDEVTSEKQIISKEQGADNSKGASEDVIYRIDV 77
LP G D+E + L F L V+S + + G + V+
Sbjct: 41 LPEPTEGFAADDEPTTPAELVGKF---LGYVSSLVE--------PSKVGQFDQVL----- 84
Query: 78 PANRYDLLCLEGLYNGLMTSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRT 137
L E Y L + I HA+AA L + +++ + I KR
Sbjct: 85 ---NLCLTEFENCY--LEGNDI--HALAAKLLQENDTTLVKTKEL-IKNYITARIMAKRP 136
Query: 138 LVAIGTHDLDTIKGPFIYDAKPPSEIRFQPL--NQ--TKEYSGTEIMDLYATSQ--IRP- 190
L + A + + Q T +Y E+ DLY T +
Sbjct: 137 FDKKSNSAL--------FRAVGEGNAQLVAIFGGQGNTDDYF-EELRDLYQTYHVLVGDL 187
Query: 191 -HAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDT---IKGPFIYDA 246
A L + +K+ T L+ ++ P
Sbjct: 188 IKFSAETLSELIRTTLD-------AEKVF-------------TQGLNILEWLENP---SN 224
Query: 247 KPPSE 251
P +
Sbjct: 225 TPDKD 229
Score = 37.7 bits (87), Expect = 0.004
Identities = 31/165 (18%), Positives = 50/165 (30%), Gaps = 63/165 (38%)
Query: 3 RSDGLTDLRLSDLLRTLVLPSTVAGH--GTDEEFASL-CFAFGLELDEV---------TS 50
+S GL +T AGH G E+A+L A + ++ + T
Sbjct: 1748 KSKGLIPA-----------DATFAGHSLG---EYAALASLADVMSIESLVEVVFYRGMTM 1793
Query: 51 EKQIISKEQGADN---------------SKGASEDVIYRIDV-------PANRYDLLCLE 88
+ + E G N S+ A + V+ R+ N
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN-------- 1845
Query: 89 GLYNGLMTSQI----RPHAVAAVLRNITLNEERYASFIELQDKLH 129
YN + Q A+ V + + + IELQ L
Sbjct: 1846 --YN-VENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLS 1887
Score = 28.5 bits (63), Expect = 2.9
Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 49/117 (41%)
Query: 180 MDLYATSQIRPHAVAAV---------------LRNITLN-----------------EERY 207
MDLY TS+ A V + +I +N E Y
Sbjct: 1633 MDLYKTSK----AAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY 1688
Query: 208 ASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYT 264
++ I + + + ++ I + + F + + L+ T ++T
Sbjct: 1689 SAMI-FETIVDGKLKTEKIFKEI---NEHSTSYTF----RSEKGL----LSAT-QFT 1732
>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide
binding fold, structural genomics, PSI; HET: NAD; 1.90A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A*
1m8k_A*
Length = 181
Score = 34.2 bits (78), Expect = 0.022
Identities = 24/124 (19%), Positives = 36/124 (29%), Gaps = 8/124 (6%)
Query: 92 NGLMTSQIRPHAVAAVLRNITLNEERYASFIELQDKLHQNICRKRTLVAIGTHDLDTIKG 151
T+ R + L + RY I +QD + + D
Sbjct: 47 RDPFTAGERVMMLTKALSENGIPASRY-YIIPVQDIECNALWVGHIKMLTPPFDRVYSGN 105
Query: 152 PFIYDAKPPS--EIRFQPLNQTKEYSGTEIMDLYAT----SQIRPHAVAAVLRNITLNEE 205
P + E+ PL YSGTE+ + P +V V+ I E
Sbjct: 106 PLVQRLFSEDGYEVTAPPLFYRDRYSGTEVRRRMLDDGDWRSLLPESVVEVIDEIN-GVE 164
Query: 206 RYAS 209
R
Sbjct: 165 RIKH 168
>1tz7_A 4-alpha-glucanotransferase; (beta, alpha)8- barrel; 2.15A {Aquifex
aeolicus} SCOP: c.1.8.1
Length = 505
Score = 32.6 bits (75), Expect = 0.11
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 134 RKRTLVAIGTHDLDTIKG 151
+ + THDL I+G
Sbjct: 394 EENNVYYTSTHDLPPIRG 411
Score = 32.6 bits (75), Expect = 0.11
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 223 RKRTLVAIGTHDLDTIKG 240
+ + THDL I+G
Sbjct: 394 EENNVYYTSTHDLPPIRG 411
>1esw_A Amylomaltase; (beta,alpha)8-barrel, glucanotransferase,
alpha-amylase FAMI acarbose, transferase; HET: ACR;
1.90A {Thermus aquaticus} SCOP: c.1.8.1 PDB: 1cwy_A*
1fp8_A 1fp9_A 2owc_A* 2oww_A* 2owx_A* 2x1i_A*
Length = 500
Score = 31.5 bits (72), Expect = 0.29
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 129 HQNICRKRTLVAIGTHDLDTIKG 151
H R +V GTHD DT G
Sbjct: 379 HNYPAHGRVVVYTGTHDNDTTLG 401
Score = 31.5 bits (72), Expect = 0.29
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 218 HQNICRKRTLVAIGTHDLDTIKG 240
H R +V GTHD DT G
Sbjct: 379 HNYPAHGRVVVYTGTHDNDTTLG 401
>1x1n_A 4-alpha-glucanotransferase; disproportionating enzyme,
amylomaltase, D-enzyme; 1.80A {Solanum tuberosum} SCOP:
c.1.8.1
Length = 524
Score = 29.4 bits (66), Expect = 1.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 135 KRTLVAIGTHDLDTIKG 151
+ +V GTHD DTI+G
Sbjct: 411 QNQVVYTGTHDNDTIRG 427
Score = 29.4 bits (66), Expect = 1.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 224 KRTLVAIGTHDLDTIKG 240
+ +V GTHD DTI+G
Sbjct: 411 QNQVVYTGTHDNDTIRG 427
>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural
genomics; HET: ATP; 2.00A {Methanocaldococcus
jannaschii} SCOP: c.26.1.3
Length = 168
Score = 28.6 bits (64), Expect = 1.6
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 162 EIRFQPLNQTKEYSGTEIMDLYAT----SQIRPHAVAAVLRNITLNEERYA 208
E++ + KEYSGTEI + P AV V++ I ER
Sbjct: 112 EVKRPEMFNRKEYSGTEIRRRMLNGEKWEHLVPKAVVDVIKEIK-GVERLR 161
>1hul_A Interleukin-5; cytokine; 2.40A {Homo sapiens} SCOP: a.26.1.2 PDB:
3qt2_C* 3b5k_A
Length = 108
Score = 27.4 bits (60), Expect = 2.3
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 74 RIDVPANRYDLLCLEGLYNGLMT---SQIRPHAVAAVLRNITLNEERYASFIELQDK 127
RI VP ++ LC E ++ G+ T ++ V + +N++L ++ +I+ Q K
Sbjct: 28 RIPVPVHKNHQLCTEEIFQGIGTLESQTVQGGTVERLFKNLSLIKK----YIDGQKK 80
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 3.5
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 9/30 (30%)
Query: 51 EKQIISKEQGADNSKGASEDVIYRID-VPA 79
EKQ + K Q + K +Y D PA
Sbjct: 18 EKQALKKLQAS--LK------LYADDSAPA 39
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP
binding binding protein; HET: TLO NAP; 1.71A
{Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A*
3rc7_A* 3rc9_A*
Length = 350
Score = 28.1 bits (63), Expect = 3.7
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 15/67 (22%)
Query: 140 AIGTHDLDTIKGPFIYDAKPPSEIRFQPLNQTKEYSGTEIMDL--YATSQIR------PH 191
IG ++ + F KP +IR+Q + G ++D+ Y
Sbjct: 166 VIG--EIRSFAASFTIPPKPQGDIRYQA-----DVGGGALLDIGVYPIRAAGLFLGADLE 218
Query: 192 AVAAVLR 198
V AVLR
Sbjct: 219 FVGAVLR 225
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.387
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,063,100
Number of extensions: 240531
Number of successful extensions: 398
Number of sequences better than 10.0: 1
Number of HSP's gapped: 392
Number of HSP's successfully gapped: 20
Length of query: 273
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 181
Effective length of database: 4,133,061
Effective search space: 748084041
Effective search space used: 748084041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.4 bits)