RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14335
         (273 letters)



>d1hula_ a.26.1.2 (A:) Interleukin-5 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 108

 Score = 27.5 bits (61), Expect = 0.72
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 7/57 (12%)

Query: 74  RIDVPANRYDLLCLEGLYNGLMTSQIRP---HAVAAVLRNITLNEERYASFIELQDK 127
           RI VP ++   LC E ++ G+ T + +      V  + +N++L ++    +I+ Q K
Sbjct: 28  RIPVPVHKNHQLCTEEIFQGIGTLESQTVQGGTVERLFKNLSLIKK----YIDGQKK 80


>d1tz7a1 c.1.8.1 (A:1-485) Amylomaltase MalQ {Aquifex aeolicus
           [TaxId: 63363]}
          Length = 485

 Score = 26.9 bits (59), Expect = 3.3
 Identities = 14/95 (14%), Positives = 25/95 (26%), Gaps = 7/95 (7%)

Query: 64  SKGASEDVIYRIDVPANRYDLLCLEGLYNGLM-----TSQIRPHAVAAVLRNITLNEER- 117
                E  +    V A    L      Y                 V  +     +   R 
Sbjct: 297 VPYGEETAVNGRWVKAPGKTLFKKLLSYFPKNPFIAEDLGFITDEVRYLRETFKIPGSRV 356

Query: 118 -YASFIELQDKLHQNICRKRTLVAIGTHDLDTIKG 151
              +F + + +   +   +  +    THDL  I+G
Sbjct: 357 IEFAFYDKESEHLPHNVEENNVYYTSTHDLPPIRG 391



 Score = 26.2 bits (57), Expect = 5.9
 Identities = 6/23 (26%), Positives = 10/23 (43%)

Query: 218 HQNICRKRTLVAIGTHDLDTIKG 240
             +   +  +    THDL  I+G
Sbjct: 369 LPHNVEENNVYYTSTHDLPPIRG 391


>d1x1na1 c.1.8.1 (A:2-524) Amylomaltase MalQ {Potato (Solanum
           tuberosum) [TaxId: 4113]}
          Length = 523

 Score = 25.8 bits (56), Expect = 6.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 134 RKRTLVAIGTHDLDTIKG 151
            +  +V  GTHD DTI+G
Sbjct: 409 EQNQVVYTGTHDNDTIRG 426



 Score = 25.8 bits (56), Expect = 6.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 223 RKRTLVAIGTHDLDTIKG 240
            +  +V  GTHD DTI+G
Sbjct: 409 EQNQVVYTGTHDNDTIRG 426


>d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus
           thermophilus, AspRS-2 [TaxId: 274]}
          Length = 93

 Score = 24.4 bits (53), Expect = 8.0
 Identities = 8/45 (17%), Positives = 16/45 (35%)

Query: 119 ASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEI 163
             F+ L+D+          L          ++G  + +AK P  +
Sbjct: 31  IQFLLLRDRSGVVQVVTGGLKLPLPESALRVRGLVVENAKAPGGL 75



 Score = 24.4 bits (53), Expect = 8.0
 Identities = 8/45 (17%), Positives = 16/45 (35%)

Query: 208 ASFIELQDKLHQNICRKRTLVAIGTHDLDTIKGPFIYDAKPPSEI 252
             F+ L+D+          L          ++G  + +AK P  +
Sbjct: 31  IQFLLLRDRSGVVQVVTGGLKLPLPESALRVRGLVVENAKAPGGL 75


>d1eswa_ c.1.8.1 (A:) Amylomaltase MalQ {Thermus aquaticus [TaxId:
           271]}
          Length = 500

 Score = 25.4 bits (55), Expect = 9.2
 Identities = 10/23 (43%), Positives = 11/23 (47%)

Query: 129 HQNICRKRTLVAIGTHDLDTIKG 151
           H      R +V  GTHD DT  G
Sbjct: 379 HNYPAHGRVVVYTGTHDNDTTLG 401



 Score = 25.4 bits (55), Expect = 9.2
 Identities = 10/23 (43%), Positives = 11/23 (47%)

Query: 218 HQNICRKRTLVAIGTHDLDTIKG 240
           H      R +V  GTHD DT  G
Sbjct: 379 HNYPAHGRVVVYTGTHDNDTTLG 401


>d1alna1 c.97.1.1 (A:1-150) Two-domain cytidine deaminase
          {Escherichia coli [TaxId: 562]}
          Length = 150

 Score = 24.8 bits (54), Expect = 9.2
 Identities = 10/36 (27%), Positives = 15/36 (41%)

Query: 12 LSDLLRTLVLPSTVAGHGTDEEFASLCFAFGLELDE 47
          L   L  ++         T E+ +SL  A GL+ D 
Sbjct: 16 LQSALEPILADKYFPALLTGEQVSSLKSATGLDEDA 51


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0660    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 958,213
Number of extensions: 42365
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 11
Length of query: 273
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 189
Effective length of database: 1,254,276
Effective search space: 237058164
Effective search space used: 237058164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.0 bits)