BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14338
(1761 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From L.
Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 125/493 (25%), Positives = 198/493 (40%), Gaps = 37/493 (7%)
Query: 1192 TRSAAQLLTCSQLHKRAERVGALL-LERAKINTGDHVALIFPPGIDLICAFYGCLYVGAV 1250
+ + T QL + A+ + A L E AK GD V L+F PG+ LI AF GCLY G +
Sbjct: 34 NKELEETXTYEQLDQHAKAIAATLQAEGAK--PGDRVLLLFAPGLPLIQAFLGCLYAGCI 91
Query: 1251 PVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILD 1310
V I PP + L L + IV SK V+VL + IK + E + P I
Sbjct: 92 AVPIYPPAQEKL---LDKAQRIVTNSKPVIVLXIADHIKKFTADELNTNPKFLKIPAIAL 148
Query: 1311 TDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPS 1370
+ + + + +A+L ++ +T G+ +SH + + +
Sbjct: 149 ESIELNRSSSWQPTSIKSNDIAFLQYTSGSTXHPKGVXVSHHNLLDNLNKIFTSFHXNDE 208
Query: 1371 RHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSY 1430
I L P+ G +L+ +Y G +I P NP WL +++Y+ +
Sbjct: 209 TIIFSWLPPHHDXGLIGCILTPIYGGIQAIXXSPFSFLQNPLSWLKHITKYKATISGSPN 268
Query: 1431 GVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALGLSPRAV 1490
+ C K I + K + L T AE R F + F G A
Sbjct: 269 FAYDYCVK----RIREEKKEGLDLSSWVTAFNGAEPV-REETXEHFYQAFKEFGFRKEAF 323
Query: 1491 STSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLPGV 1550
+G + G + + ++ RV + SP S L+ SG + V
Sbjct: 324 YPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEV 383
Query: 1551 KVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYA 1610
K+I +P+T C +GEIWVQS A GY + E F+ ++ +Y
Sbjct: 384 KII--DPDTLIPCDFDQVGEIWVQSNSVAKGY---WNQPEETRHAFAGKIKDDERSAIYL 438
Query: 1611 RTGYLGFLRRTSXXXXXXXXXXXXXSKLHDAVFVVGALDETIMLRGMRYHPIDIENSVMR 1670
RTG LGFL + ++V G + + I++ G ++P DIE S+
Sbjct: 439 RTGDLGFLHE-------------------NELYVTGRIKDLIIIYGKNHYPQDIEFSLXH 479
Query: 1671 A--HKKIAECAVF 1681
+ H + +CA F
Sbjct: 480 SPLHHVLGKCAAF 492
Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 135/573 (23%), Positives = 237/573 (41%), Gaps = 45/573 (7%)
Query: 106 NGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFY 165
N +L T TY +L + +A TL + K GDR+ L++ P+ + AF
Sbjct: 34 NKELEETXTYEQLDQHAKAIAATLQAE--------GAKPGDRVLLLFAPGLPL--IQAFL 83
Query: 166 GCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFK 225
GC++AG + VPI P + Q + S + V +D + K A E+
Sbjct: 84 GCLYAGCIAVPIYPPAQEKLLDKAQ-RIVTNSKPVIVLXIADH----IKKFTADELNTNP 138
Query: 226 GWPKLTWFVTEHLA-KTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCR 284
+ K+ E + W P ++D A+++YT+ GV V+ +L +
Sbjct: 139 KFLKIPAIALESIELNRSSSWQPTSIKSNDI-AFLQYTSGSTXHPKGVXVSHHNLLDNLN 197
Query: 285 ALTQACHYTEGENMVCVLDFKRETGLWHSVLTSVLNGMHAVYI-PYALMKVNPASWMQMI 343
+ + H + + L + GL +LT + G+ A+ P++ ++ NP SW++ I
Sbjct: 198 KIFTSFHXNDETIIFSWLPPHHDXGLIGCILTPIYGGIQAIXXSPFSFLQ-NPLSWLKHI 256
Query: 344 TKYRASVAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGANPWSLSSCDQFLSVFQSK 403
TKY+A+++ + + + ++ K L + +GA P + + F F+
Sbjct: 257 TKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETXEHFYQAFKEF 316
Query: 404 GLRPDAICPCASSSEC-LTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLT 462
G R +A PC +E L V+ PG + T L+ V +NS S
Sbjct: 317 GFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLT----LAKEQFQDHRVHFADDNSPGSYK 372
Query: 463 LQDCGQVMPGCIMTVVKMDSPSYL--CKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVT 520
L V G + VK+ P L C D+VGEI V S YW P + F
Sbjct: 373 L-----VSSGNPIQEVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGK 427
Query: 521 PLLADGTALSQDTYTRSXXXXXXXXXXXXXXXXSRDGLMTVTGRKHNADDIIATVLAVEP 580
+ +A+ Y R+ +D L+ + G+ H DI + L P
Sbjct: 428 IKDDERSAI----YLRTGDLGFLHENELYVTGRIKD-LIIIYGKNHYPQDIEFS-LXHSP 481
Query: 581 MKFIYRGRIAVFSIRVLRDERICVIAEQR----PDCSEEESFQWMSRVLQAVDSIHQVGL 636
+ + G+ A F I+ + ++ V E + D +++ F + + + V HQ+ +
Sbjct: 482 LHHVL-GKCAAFVIQEEHEYKLTVXCEVKNRFXDDVAQDNLF---NEIFELVYENHQLEV 537
Query: 637 YCLALVPPNYLPKTPLGGIHLSECKRRFLEGNL 669
+ + L+P P T G I + C++ L+ L
Sbjct: 538 HTIVLIPLKAXPHTTSGKIRRNFCRKHLLDKTL 570
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 51/97 (52%), Gaps = 5/97 (5%)
Query: 775 QFISEILKWRAASTSEHVIFTLLNSKGSAAQLLTCSQLHKRAERVGALL-LERAKINTGD 833
Q + ++++ RA + T LN + + T QL + A+ + A L E AK GD
Sbjct: 11 QSLVDVVRLRALHSPNKKSCTFLNKE--LEETXTYEQLDQHAKAIAATLQAEGAK--PGD 66
Query: 834 HVALIFPPGIDLICAFYGCLYVGAVPVTIRPPHPQNL 870
V L+F PG+ LI AF GCLY G + V I PP + L
Sbjct: 67 RVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKL 103
Score = 39.3 bits (90), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 878 QFISEILKWRAASTSEHVIFTLLNSKGSAAQLLTCSQLHKRAERVGALL-LERAKINTGD 936
Q + ++++ RA + T LN + + T QL + A+ + A L E AK GD
Sbjct: 11 QSLVDVVRLRALHSPNKKSCTFLNKE--LEETXTYEQLDQHAKAIAATLQAEGAK--PGD 66
Query: 937 HVALIFPPGIDLICAFYGCL 956
V L+F PG+ LI AF GCL
Sbjct: 67 RVLLLFAPGLPLIQAFLGCL 86
Score = 33.5 bits (75), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 1123 IWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRT 1173
IWVQS A GY + E F+ ++ +Y RTG LGFL
Sbjct: 402 IWVQSNSVAKGY---WNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHEN 449
Score = 30.4 bits (67), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 1006 DAVFVVGALDETIMLRGMRYHPIDIENSVMRA--HKKIAECAVF 1047
+ ++V G + + I++ G ++P DIE S+ + H + +CA F
Sbjct: 449 NELYVTGRIKDLIIIYGKNHYPQDIEFSLXHSPLHHVLGKCAAF 492
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 144/586 (24%), Positives = 231/586 (39%), Gaps = 70/586 (11%)
Query: 104 DPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCA 163
D +L L Y L +R+ A LL+ +LK GDR+AL+ + F+ A
Sbjct: 40 DRRCQLEDQLEYQTLKARAEAGAKRLLSL--------NLKKGDRVALIAETSS--EFVEA 89
Query: 164 FYGCIFAGIVPVPIEVP--LTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEV 221
F+ C +AG+V VP+ +P + +RD+ S ++ LL SC +T D + LP A
Sbjct: 90 FFACQYAGLVAVPLAIPXGVGQRDSWSAKLQGLLASCQPAAIITGD---EWLPLVNA--- 143
Query: 222 VAFKGWPKL-----TWFVTEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTR 276
A P+L WF A D A Q + +D AY++YT+ GV +T
Sbjct: 144 -ATHDNPELHVLSHAWFK----ALPEADVALQRPVPNDI-AYLQYTSGSTRFPRGVIITH 197
Query: 277 AAMLSHCRALTQ-ACHYTEGENMVCVLDFKRETGLWHSVLTSVLNGMHAVYIPYALMKVN 335
+ ++ RA++ G+ V L F + GL +LT V + Y+
Sbjct: 198 REVXANLRAISHDGIKLRPGDRCVSWLPFYHDXGLVGFLLTPVATQLSVDYLRTQDFAXR 257
Query: 336 PASWMQMITKYRASVAVVK--SRDLHWGLLATKDHKDISLSSLRLLLVGDGANPWSLSSC 393
P W+++I+K R +V+V +L + KD ++ LS R + G GA P S
Sbjct: 258 PLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWR--VAGIGAEPISAEQL 315
Query: 394 DQFLSVFQSKGLRPDAICPCASSSE-CLTVSVRRPGRA-GVNATGRGVLSMSGLSYGVVR 451
QF F+ PC +E L VS VN R +L G + V
Sbjct: 316 HQFAECFRQVNFDNKTFXPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKA---VA 372
Query: 452 VDQENSLTSLTLQDCGQVMPGCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPG 511
E S T +CG+ +P + + + VG IC++ S Y+G
Sbjct: 373 PGAETRAVS-TFVNCGKALPEHGIEI--RNEAGXPVAERVVGHICISGPSLXSGYFG-DQ 428
Query: 512 LSNTTFKVTPLLADGTALSQDTYTRSXXXXXXXXXXXXXXXXSRDGLMTVTGRKHNADDI 571
+S T L G DG + VTGR + I
Sbjct: 429 VSQDEIAATGWLDTGD-----------------------LGYLLDGYLYVTGRIKDLIII 465
Query: 572 IATVLAVEPMKFIYRGRIAVFS---IRVLRDERICVIAEQRPDCSEEESFQWMSRVLQAV 628
+ + +++I + S I + + ++ Q EE Q + + +
Sbjct: 466 RGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQEKIILQIQCRISDEERRGQLIHALAARI 525
Query: 629 DSIHQVGLYCLALVPPNYLPKTPLGGIHLSECKRRFLEGNLHPANV 674
S V + L+PP+ +P+T G +E K+R+ + NV
Sbjct: 526 QSEFGV-TAAIDLLPPHSIPRTSSGKPARAEAKKRYQKAYAASLNV 570
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 110/481 (22%), Positives = 177/481 (36%), Gaps = 67/481 (13%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVG--AVPVTIRP 1256
L L RAE GA L + GD VALI + + AF+ C Y G AVP+ I P
Sbjct: 49 LEYQTLKARAE-AGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAI-P 106
Query: 1257 PHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNV---VDIKSWPTILDTDD 1313
+ ++ ++ + +++ + L+ + N V +W L D
Sbjct: 107 XGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVLSHAWFKALPEAD 166
Query: 1314 MPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKL-ACELYPSRH 1372
+ AL R P +AYL ++ +T G+ ++H V + R++ +L P
Sbjct: 167 V------ALQR-PVPNDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDGIKLRPGDR 219
Query: 1373 IALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGV 1432
L Y G ++L+ V + + + P WL +S+ R +
Sbjct: 220 CVSWLPFYHDXGLVGFLLTPVATQLSVDYLRTQDFAXRPLQWLKLISKNRGTVSVAPPFG 279
Query: 1433 MELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALGLSPRAVST 1492
ELC + + + + L C R + AE L F++ F + +
Sbjct: 280 YELCQR----RVNEKDLAELDLSCWRVAGIGAEPISAEQLHQ-FAECFRQVNFDNKTFXP 334
Query: 1493 SFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHS--------LCLLESG 1544
+G N L + S E S V V+ DR L +G + + G
Sbjct: 335 CYGLAEN---ALAVSFSDEASGVVVN----EVDRDILEYQGKAVAPGAETRAVSTFVNCG 387
Query: 1545 KLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGN 1604
K LP + I N E + +G I + P SGYF + E A TG
Sbjct: 388 KALPEHGIEIRN-EAGXPVAERVVGHICISGPSLXSGYFGDQVSQDEIA-------ATG- 438
Query: 1605 TGELYARTGYLGFLRRTSXXXXXXXXXXXXXSKLHDAVFVVGALDETIMLRGMRYHPIDI 1664
+ TG LG+L L ++V G + + I++RG P DI
Sbjct: 439 ----WLDTGDLGYL-------------------LDGYLYVTGRIKDLIIIRGRNIWPQDI 475
Query: 1665 E 1665
E
Sbjct: 476 E 476
Score = 34.3 bits (77), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 807 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPP 865
L L RAE GA L + GD VALI + + AF+ C Y G V V + P
Sbjct: 49 LEYQTLKARAE-AGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAIP 106
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 113/451 (25%), Positives = 182/451 (40%), Gaps = 54/451 (11%)
Query: 1191 DTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVG-- 1248
D A LT SQL++R V A L R +TGD V + P G++ + AF G L G
Sbjct: 51 DWDGVAITLTWSQLYRRTLNV-AQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRI 108
Query: 1249 AVPVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVV-------D 1301
AVP+++ PQ T +S VLS+ + + +L + A + V
Sbjct: 109 AVPLSV----PQGGVTD----------ERSDSVLSDSSPVAILTTSSAVDDVVQHVARRP 154
Query: 1302 IKSWPTILDTD----DMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAV--- 1354
+S P+I++ D D P P+ AYL ++ +T AG+ MSH V
Sbjct: 155 GESPPSIIEVDLLDLDAPNGYTFKEDEYPST---AYLQYTSGSTRTPAGVVMSHQNVRVN 211
Query: 1355 -TSLCRSMKLACELYPSRHIALC--LDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNP 1411
L + P + AL L Y +G + + + + G+ ++L P P
Sbjct: 212 FEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRP 271
Query: 1412 ALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIH 1471
A W+ ++ + EL + + + R+ LG + T ++ ER +
Sbjct: 272 ARWMHLMASDFHAFSAAPNFAFELAARRTTDD--DMAGRD--LGNILT-ILSGSERVQAA 326
Query: 1472 LTSAFSKLFSALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVE 1531
F+ F+ L R + S+ P V D +L
Sbjct: 327 TIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCA 386
Query: 1532 RGSPHSLCLLESGKLLPGVKVI-IANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDES 1590
G SL +LP ++ I + +T +C D +GEIWV + A+GY+ DES
Sbjct: 387 GGGATSLI----SYMLPRSPIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQ-KPDES 441
Query: 1591 EYAQQFSARLVTGNTGE---LYARTGYLGFL 1618
E + F ++VT + G + RTG GF+
Sbjct: 442 E--RTFGGKIVTPSPGTPEGPWLRTGDSGFV 470
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 105/473 (22%), Positives = 167/473 (35%), Gaps = 76/473 (16%)
Query: 81 RNLEAAIQRYGSATYKAPVATVLDPNGK---LSITLTYGKLLSRSLKVAYTLLTKPINRT 137
R+L AA++ P T +D ++ITLT+ +L R+L VA L
Sbjct: 24 RSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQEL-------- 75
Query: 138 SESSLKSGDRIALVYPNNDPINFLCAFYGCIFAGIVPVPIEVPLTR-RDAGSQQIGFLLG 196
+GDR+ + P + ++ AF G + AG + VP+ VP D S + L
Sbjct: 76 -SRCGSTGDRVVISAPQG--LEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSV--LSD 130
Query: 197 SCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKLTWFVTEHLAKTPKDWAPQPRLTD--- 253
S + + TS A V +H+A+ P + P D
Sbjct: 131 SSPVAILTTSSAVDD----------------------VVQHVARRPGESPPSIIEVDLLD 168
Query: 254 -DTP-------------AYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACHY-TEG--- 295
D P AY++YT+ + GV ++ + + L T+G
Sbjct: 169 LDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPP 228
Query: 296 --ENMVCVLDFKRETGLWHSVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVAVV 353
+V L F + GL + +L G AV PA WM ++ + +
Sbjct: 229 PNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHAFSAA 288
Query: 354 KSRDLHWGLLATKDHKDISLSSLRLLLVGDGANPWSLSSCDQFLSVFQSKGLRPDAICPC 413
+ T D +L + G+ ++ +F F L+ I P
Sbjct: 289 PNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPS 348
Query: 414 ASSSEC-LTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQVMP- 471
+E + V+ +PG+ LS G + TSL ++P
Sbjct: 349 YWLAEATVYVATSKPGQPPETVD----FDTESLSAGHAKPCAGGGATSL----ISYMLPR 400
Query: 472 GCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFK---VTP 521
I+ +V D+ C VGEI V + YW P S TF VTP
Sbjct: 401 SPIVRIVDSDT-CIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTP 452
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 794 FTLLNSK---GSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFY 850
FT ++ + A LT SQL++R V A L R +TGD V + P G++ + AF
Sbjct: 43 FTFMDYEQDWDGVAITLTWSQLYRRTLNV-AQELSRCG-STGDRVVISAPQGLEYVVAFL 100
Query: 851 GCLYVG--AVPVTI 862
G L G AVP+++
Sbjct: 101 GALQAGRIAVPLSV 114
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 897 FTLLNSK---GSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFY 953
FT ++ + A LT SQL++R V A L R +TGD V + P G++ + AF
Sbjct: 43 FTFMDYEQDWDGVAITLTWSQLYRRTLNV-AQELSRCG-STGDRVVISAPQGLEYVVAFL 100
Query: 954 GCL 956
G L
Sbjct: 101 GAL 103
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 113/452 (25%), Positives = 179/452 (39%), Gaps = 56/452 (12%)
Query: 1191 DTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVG-- 1248
D A LT SQL++R V A L R +TGD V + P G++ + AF G L G
Sbjct: 51 DWDGVAITLTWSQLYRRTLNV-AQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRI 108
Query: 1249 AVPVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVV-------D 1301
AVP+++ PQ T +S VLS+ + + +L + A + V
Sbjct: 109 AVPLSV----PQGGVTD----------ERSDSVLSDSSPVAILTTSSAVDDVVQHVARRP 154
Query: 1302 IKSWPTILDTD----DMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAV--- 1354
+S P+I++ D D P ++ AYL ++ +T AG+ SH V
Sbjct: 155 GESPPSIIEVDLLDLDAPN---GYTFKEDEYPSTAYLQYTSGSTRTPAGVVXSHQNVRVN 211
Query: 1355 -TSLCRSMKLACELYPSRHIALC--LDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNP 1411
L + P + AL L Y G + + + + G+ ++L P P
Sbjct: 212 FEQLXSGYFADTDGIPPPNSALVSWLPFYHDXGLVIGICAPILGGYPAVLTSPVSFLQRP 271
Query: 1412 ALWLS-AVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRI 1470
A W S + ++ EL + + R+ LG + T ++ ER +
Sbjct: 272 ARWXHLXASDFHAFSAAPNF-AFELAARRTTDD--DXAGRD--LGNILT-ILSGSERVQA 325
Query: 1471 HLTSAFSKLFSALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLV 1530
F+ F+ L R + S+G P V D +L
Sbjct: 326 ATIKRFADRFARFNLQERVIRPSYGLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPC 385
Query: 1531 ERGSPHSLCLLESGKLLPGVKVI-IANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDE 1589
G SL LP ++ I + +T +C D +GEIWV + A+GY+ DE
Sbjct: 386 AGGGATSLI----SYXLPRSPIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQ-KPDE 440
Query: 1590 SEYAQQFSARLVTGNTGE---LYARTGYLGFL 1618
SE + F ++VT + G + RTG GF+
Sbjct: 441 SE--RTFGGKIVTPSPGTPEGPWLRTGDSGFV 470
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 97/442 (21%), Positives = 152/442 (34%), Gaps = 73/442 (16%)
Query: 109 LSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCI 168
++ITLT+ +L R+L VA L +GDR+ + P + ++ AF G +
Sbjct: 55 VAITLTWSQLYRRTLNVAQEL---------SRCGSTGDRVVISAPQG--LEYVVAFLGAL 103
Query: 169 FAGIVPVPIEVPLTR-RDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGW 227
AG + VP+ VP D S + L S + + TS A
Sbjct: 104 QAGRIAVPLSVPQGGVTDERSDSV--LSDSSPVAILTTSSAVDD---------------- 145
Query: 228 PKLTWFVTEHLAKTPKDWAPQPRLTD----DTP-------------AYIEYTTDRDGSVM 270
V +H+A+ P + P D D P AY++YT+ +
Sbjct: 146 ------VVQHVARRPGESPPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPA 199
Query: 271 GVTVTRAAMLSHCRALTQACHY-TEG-----ENMVCVLDFKRETGLWHSVLTSVLNGMHA 324
GV + + + L T+G +V L F + GL + +L G A
Sbjct: 200 GVVXSHQNVRVNFEQLXSGYFADTDGIPPPNSALVSWLPFYHDXGLVIGICAPILGGYPA 259
Query: 325 VYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDG 384
V PA W + + + + T D +L + G
Sbjct: 260 VLTSPVSFLQRPARWXHLXASDFHAFSAAPNFAFELAARRTTDDDXAGRDLGNILTILSG 319
Query: 385 ANPWSLSSCDQFLSVFQSKGLRPDAICPCASSSEC-LTVSVRRPGRAGVNATGRGVLSMS 443
+ ++ +F F L+ I P +E + V+ +PG+
Sbjct: 320 SERVQAATIKRFADRFARFNLQERVIRPSYGLAEATVYVATSKPGQPPETVD----FDTE 375
Query: 444 GLSYGVVRVDQENSLTSLTLQDCGQVMP-GCIMTVVKMDSPSYLCKTDEVGEICVASTGT 502
LS G + TSL +P I+ +V D+ C VGEI V
Sbjct: 376 SLSAGHAKPCAGGGATSL----ISYXLPRSPIVRIVDSDT-CIECPDGTVGEIWVHGDNV 430
Query: 503 GSQYWGLPGLSNTTFK---VTP 521
+ YW P S TF VTP
Sbjct: 431 ANGYWQKPDESERTFGGKIVTP 452
Score = 35.4 bits (80), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 804 AQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVG--AVPVT 861
A LT SQL++R V A L R +TGD V + P G++ + AF G L G AVP++
Sbjct: 56 AITLTWSQLYRRTLNV-AQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAVPLS 113
Query: 862 I 862
+
Sbjct: 114 V 114
Score = 31.2 bits (69), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 907 AQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCL 956
A LT SQL++R V A L R +TGD V + P G++ + AF G L
Sbjct: 56 AITLTWSQLYRRTLNV-AQELSRCG-STGDRVVISAPQGLEYVVAFLGAL 103
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 18/169 (10%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 1258
+T +Q++ A R A +L I GD VAL+ P ++ C FYG +GAV V
Sbjct: 30 MTYAQMNALANRC-ADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAV------ 82
Query: 1259 PQNLQTTLPTVRMIVDVSKSVLVL---SNQNVIKLLKSKEASNVVDIKSWPTILDTDDMP 1315
P N + P V I+ S S +V+ + VI +++ +A + W + D +
Sbjct: 83 PINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRA-QADPPGTVTDW---IGADSLA 138
Query: 1316 KKKLAALYRAPTAEMLA----YLDFSVSTTGMLAGIKMSHAAVTSLCRS 1360
++ +A P E ++ ++ TTG G+ +H +V S S
Sbjct: 139 ERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASS 187
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 23/172 (13%)
Query: 120 SRSLKVAYTLLTKPINRTSES----SLKSGDRIALVYPNNDPINFLCAFYGCIFAGIVPV 175
S +++ Y + NR ++ + GDR+AL+ PN+ + F C FYG G V V
Sbjct: 25 STDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNS--VEFCCLFYGAAKLGAVAV 82
Query: 176 PIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKLT---W 232
PI L + ++ F+L +V + G P + + + P T W
Sbjct: 83 PINTRLA-----APEVSFILSDSGSKV------VIYGAPSAPVIDAIRAQADPPGTVTDW 131
Query: 233 FVTEHLAKTPKDWA---PQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLS 281
+ LA+ + A P D +I YT+ G GV T ++ S
Sbjct: 132 IGADSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHS 183
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 807 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 866
+T +Q++ A R A +L I GD VAL+ P ++ C FYG +GAV V
Sbjct: 30 MTYAQMNALANRC-ADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAV------ 82
Query: 867 PQNLQTTLPTHQFI 880
P N + P FI
Sbjct: 83 PINTRLAAPEVSFI 96
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 910 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGC 955
+T +Q++ A R A +L I GD VAL+ P ++ C FYG
Sbjct: 30 MTYAQMNALANRC-ADVLTALGIAKGDRVALLMPNSVEFCCLFYGA 74
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 18/169 (10%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 1258
+T +Q++ A R A +L I GD VAL+ P ++ C FYG +GAV V
Sbjct: 44 MTYAQMNALANRC-ADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAV------ 96
Query: 1259 PQNLQTTLPTVRMIVDVSKSVLVL---SNQNVIKLLKSKEASNVVDIKSWPTILDTDDMP 1315
P N + P V I+ S S +V+ + VI +++ +A + W + D +
Sbjct: 97 PINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRA-QADPPGTVTDW---IGADSLA 152
Query: 1316 KKKLAALYRAPTAEMLA----YLDFSVSTTGMLAGIKMSHAAVTSLCRS 1360
++ +A P E ++ ++ TTG G+ +H +V S S
Sbjct: 153 ERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASS 201
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 86/219 (39%), Gaps = 24/219 (10%)
Query: 120 SRSLKVAYTLLTKPINRTSES----SLKSGDRIALVYPNNDPINFLCAFYGCIFAGIVPV 175
S +++ Y + NR ++ + GDR+AL+ PN+ + F C FYG G V V
Sbjct: 39 STDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNS--VEFCCLFYGAAKLGAVAV 96
Query: 176 PIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKLT---W 232
PI L + ++ F+L +V + G P + + + P T W
Sbjct: 97 PINTRLA-----APEVSFILSDSGSKV------VIYGAPSAPVIDAIRAQADPPGTVTDW 145
Query: 233 FVTEHLAKTPKDWA---PQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQA 289
+ LA+ + A P D +I YT+ G GV T ++ S +
Sbjct: 146 IGADSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWAST 205
Query: 290 CHYTEGENMVCVLDFKRETGLWHSVLTSVLNGMHAVYIP 328
+ ++ L L +V+ S + G+ + +P
Sbjct: 206 IDVRYRDRLLLPLPMFHVAAL-TTVIFSAMRGVTLISMP 243
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 807 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 866
+T +Q++ A R A +L I GD VAL+ P ++ C FYG +GAV V
Sbjct: 44 MTYAQMNALANRC-ADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAV------ 96
Query: 867 PQNLQTTLPTHQFI 880
P N + P FI
Sbjct: 97 PINTRLAAPEVSFI 110
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 910 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGC 955
+T +Q++ A R A +L I GD VAL+ P ++ C FYG
Sbjct: 44 MTYAQMNALANRC-ADVLTALGIAKGDRVALLMPNSVEFCCLFYGA 88
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 75/159 (47%), Gaps = 13/159 (8%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 1258
LT +L+ +A ++ + +E+ I V ++ IDL L G V I +
Sbjct: 65 LTYHELNVKANQLARIFIEKG-IGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEY 123
Query: 1259 PQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDMPKKK 1318
P+ ++ I+D S++ ++L+ ++++ L+ + + + V+I + D + ++
Sbjct: 124 PKE------RIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEI------FEEDTIKIRE 171
Query: 1319 LAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSL 1357
L+ + LAY+ ++ TTG G + H +++L
Sbjct: 172 GTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNL 210
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With
Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With
Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With
D-valine And Amp From Streptomyces
Length = 544
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 77/201 (38%), Gaps = 23/201 (11%)
Query: 1221 INTGDHVALIFPPGIDLICAFYGCLYVGA--VPVTIRPPHPQNLQTTLPTVRMIVDVSKS 1278
+ GD VAL PG + I A L GA VPV +R P VS+S
Sbjct: 82 VRPGDRVALRMSPGAEAIVAILAILKCGAAYVPVDLRNP-----------------VSRS 124
Query: 1279 VLVLSNQNVIKLL-KSKEASNVVDIKSWPTILDTDDMPKKKLAALYRAPTAEMLAYLDFS 1337
+L++ L+ + E V + + + D + P AE +AY+ ++
Sbjct: 125 DFILADSGASALIGEPHEGCAVTRVVRTAAVAECKDAEPGPVTGA-PGPGAEDMAYVIYT 183
Query: 1338 VSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGH 1397
TTG G+ + HA V +L + S L F++W + +S
Sbjct: 184 SGTTGNPKGVPVRHANVLALLAGAPSVFDF--SGDDRWLLFHSLSFDFSVWEIWGAFSTG 241
Query: 1398 HSILIPPSEVEVNPALWLSAV 1418
+++ P P +L+ +
Sbjct: 242 AELVVLPHWAARTPEQYLAVI 262
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 97/411 (23%), Positives = 154/411 (37%), Gaps = 92/411 (22%)
Query: 1200 TCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPHP 1259
T +L +RA R A L ++ + + L+ + L AF G LY G VPV
Sbjct: 50 TYGELEERARRF-ASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVA----- 103
Query: 1260 QNLQTTLPTVRMIVDVSKSVLVLSN---QNVIKLLKSKEASNVVDIKSWPTILDTDDMPK 1316
L T V M+ ++ S QNV + L+S E I S P +
Sbjct: 104 NTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPR------ESE 157
Query: 1317 KKLAALYR-------------APTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKL 1363
+LA L+ A + +A+ +S +TG G +HA ++
Sbjct: 158 PRLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHA-------NLYW 210
Query: 1364 ACELYPSRHIALCLDPYC----------GLGFALWVLSSVYSGHHSILIPPSEVEVNPAL 1413
ELY + + + GLG L SV G +IL+ +E A+
Sbjct: 211 TAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSV--GATAILM--AERPTADAI 266
Query: 1414 WLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLT 1473
+ V R T YGV L L P L AR A +R C E PR
Sbjct: 267 FARLVEH---RPT-VFYGVPTLYANMLVS--PNLPAR--ADVAIRICTSAGEALPR---- 314
Query: 1474 SAFSKLFSALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERG 1533
+ F+A FGC + L G S E +++ ++R VE G
Sbjct: 315 -EIGERFTA----------HFGCEI-----LDGIGSTEMLHIFL------SNRAGAVEYG 352
Query: 1534 SPHSLCLLESGKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFS 1584
+ +G+ +PG ++ + + E D +G+++++ P A Y++
Sbjct: 353 T--------TGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWN 394
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 37.0 bits (84), Expect = 0.10, Method: Composition-based stats.
Identities = 31/127 (24%), Positives = 47/127 (37%), Gaps = 19/127 (14%)
Query: 824 LERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPHPQ---------NLQTTL 874
+ R + G+HV + P ID + Y V A PV I P + + TTL
Sbjct: 69 ISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILNDSEATTL 128
Query: 875 PTHQFISEILKWRAASTSEHVIFTLLNSKGSAAQLLTCSQLHKRAERVGALLLERAKINT 934
H + E K T +F + S +++ G+ E K+N
Sbjct: 129 VVHSXLYENFKPVLEKTGVERVFVVGGEVNSLSEVXDS----------GSEDFENVKVNP 178
Query: 935 GDHVALI 941
+ VALI
Sbjct: 179 EEDVALI 185
Score = 33.9 bits (76), Expect = 0.89, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 1216 LERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 1258
+ R + G+HV + P ID + Y V A PV I P +
Sbjct: 69 ISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXY 111
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing Adenylation
And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 33.9 bits (76), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 1327 TAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLC 1358
A+ +AY++FS TTG I +HA +T LC
Sbjct: 162 AADQIAYINFSSGTTGRPKAIACTHAGITRLC 193
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 33.1 bits (74), Expect = 1.3, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 1544 GKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSL-YGDESEYAQQFSARLVT 1602
G LPGV + +PET + +G I V+ P+ GY+ +SE+ +T
Sbjct: 323 GPALPGVSARVTDPETGKELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRD--DGFFIT 380
Query: 1603 GNTGELYARTGYLGFLRR 1620
G+ G++ R GY+ L R
Sbjct: 381 GDLGKIDER-GYVHILGR 397
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 74/188 (39%), Gaps = 36/188 (19%)
Query: 121 RSLKVAYTLLTKPINRTSE--SSLKSGDRIA-LVYPNNDPINFLCAFYGCIFAG--IVPV 175
R K+ Y L + + + SS DR +VY + P + F GC+ AG +PV
Sbjct: 23 RDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQP-EMIINFLGCVKAGHAYIPV 81
Query: 176 PIEVPLTR--RDAGSQQIGFLLGS-----CDIQVALTSDACLKGLPKTAAGEVVAFKGWP 228
+ +P R R A + LL + D+ V + S+ LK +
Sbjct: 82 DLSIPADRVQRIAENSGAKLLLSATAVTVTDLPVRIVSEDNLKDI--------------- 126
Query: 229 KLTWFVTEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQ 288
F T H TP P+ + D YI YT+ G+ GV +T ++S + +
Sbjct: 127 ----FFT-HKGNTPN---PEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVE 178
Query: 289 ACHYTEGE 296
+ G+
Sbjct: 179 DFNLQTGQ 186
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 74/188 (39%), Gaps = 36/188 (19%)
Query: 121 RSLKVAYTLLTKPINRTSE--SSLKSGDRIA-LVYPNNDPINFLCAFYGCIFAG--IVPV 175
R K+ Y L + + + SS DR +VY + P + F GC+ AG +PV
Sbjct: 23 RDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQP-EMIINFLGCVKAGHAYIPV 81
Query: 176 PIEVPLTR--RDAGSQQIGFLLGS-----CDIQVALTSDACLKGLPKTAAGEVVAFKGWP 228
+ +P R R A + LL + D+ V + S+ LK +
Sbjct: 82 DLSIPADRVQRIAENSGAKLLLSATAVTVTDLPVRIVSEDNLKDI--------------- 126
Query: 229 KLTWFVTEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQ 288
F T H TP P+ + D YI YT+ G+ GV +T ++S + +
Sbjct: 127 ----FFT-HKGNTPN---PEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVE 178
Query: 289 ACHYTEGE 296
+ G+
Sbjct: 179 DFNLQTGQ 186
>pdb|1KXZ|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1L3B|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3C|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3I|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1F38|A Chain A, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|B Chain B, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|C Chain C, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|D Chain D, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
Length = 192
Score = 31.6 bits (70), Expect = 3.9, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
Query: 407 PDAICPCASSSECLTVSVRRPGRAGVN-----ATGRGVLSMSGLSYGVVRVDQENSLTSL 461
P P A CL + PG+ V TG L ++G V +D+ S
Sbjct: 11 PSVPGPTAXEVRCLIXCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAIST 70
Query: 462 TLQDCGQVMPGCIMTVVKMDSPSYLCKTDEVGEICVASTG 501
T + + G +T+ + D+P LCK ++ V +G
Sbjct: 71 TEXNLQRHGLGDNVTLXEGDAPEALCKIPDIDIAVVGGSG 110
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 31.6 bits (70), Expect = 4.1, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 1544 GKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSL-YGDESEYAQQFSARLVT 1602
G LPGV + +PET + +G I V P+ GY+ + SE+ +T
Sbjct: 323 GPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRD--DGFFIT 380
Query: 1603 GNTGELYARTGYLGFLRR 1620
G+ G + R GY+ L R
Sbjct: 381 GDLGXIDER-GYVHILGR 397
>pdb|3P0J|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|C Chain C, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|D Chain D, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
Length = 690
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 1507 ASSPEPSCVYV--DLRALRNDRVSLVERGSPHSL----CLLESGKLLPGVKVIIANPETK 1560
A+ PE + V D A+ +D ++ VE+ +L LL++ L VK++ N
Sbjct: 411 AAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLPSSVKIVTENEVIL 470
Query: 1561 GQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLV 1601
G C D + I + + S LYG E A Q A L+
Sbjct: 471 GNCDDFWVSVIGIARKNLLSHVEELYGGEVRNAGQVIAALM 511
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 31.6 bits (70), Expect = 4.3, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 1544 GKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSL-YGDESEYAQQFSARLVT 1602
G LPGV + +PET + +G I V P+ GY+ + SE+ +T
Sbjct: 323 GPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRD--DGFFIT 380
Query: 1603 GNTGELYARTGYLGFLRR 1620
G+ G + R GY+ L R
Sbjct: 381 GDLGXIDER-GYVHILGR 397
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 31.6 bits (70), Expect = 4.4, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 1544 GKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSL-YGDESEYAQQFSARLVT 1602
G LPGV + +PET + +G I V P+ GY+ + SE+ +T
Sbjct: 323 GPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRD--DGFFIT 380
Query: 1603 GNTGELYARTGYLGFLRR 1620
G+ G + R GY+ L R
Sbjct: 381 GDLGXIDER-GYVHILGR 397
>pdb|2F6H|X Chain X, Myosin V Cargo Binding Domain
Length = 419
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 300 CVLDFKRETGLWHSVLTSVLNGMHAVYIPYALMKVNPASW 339
C+ F E ++H+V+T++LN + A+ +MK N SW
Sbjct: 217 CMKSFHIENEVFHAVVTTLLNYVDAICFNELIMKRNFLSW 256
>pdb|3P0H|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0H|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0I|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
pdb|3P0I|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
Length = 690
Score = 30.4 bits (67), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Query: 1507 ASSPEPSCVYV--DLRALRNDRVSLVERGSPHSL----CLLESGKLLPGVKVIIANPETK 1560
A+ PE + V D A+ +D ++ VE+ +L LL++ L VK++ N
Sbjct: 411 AAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLPSSVKIVTENEVIL 470
Query: 1561 GQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARL 1600
G C D + I + + S LYG E A Q A L
Sbjct: 471 GNCDDFWVSVIGIARKNLLSHVEELYGGEVRNAGQVIAAL 510
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,360,328
Number of Sequences: 62578
Number of extensions: 1951520
Number of successful extensions: 3922
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 3836
Number of HSP's gapped (non-prelim): 78
length of query: 1761
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1648
effective length of database: 7,902,023
effective search space: 13022533904
effective search space used: 13022533904
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)