Query psy14338
Match_columns 1761
No_of_seqs 970 out of 4969
Neff 9.0
Searched_HMMs 29240
Date Fri Aug 16 17:21:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14338.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14338hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vsq_A Surfactin synthetase su 100.0 3.2E-80 1.1E-84 878.8 42.9 542 13-663 414-957 (1304)
2 4dg8_A PA1221; ANL superfamily 100.0 1.4E-79 4.6E-84 804.6 41.2 489 80-667 26-514 (620)
3 1amu_A GRSA, gramicidin synthe 100.0 9.2E-76 3.2E-80 762.7 39.5 487 81-664 39-527 (563)
4 3ni2_A 4-coumarate:COA ligase; 100.0 5.8E-75 2E-79 753.2 45.1 502 81-665 22-534 (536)
5 4fuq_A Malonyl COA synthetase; 100.0 3E-75 1E-79 749.2 41.6 490 85-666 4-500 (503)
6 3rg2_A Enterobactin synthase c 100.0 6E-75 2E-79 765.0 42.9 493 80-666 26-534 (617)
7 3r44_A Fatty acyl COA syntheta 100.0 1.3E-74 4.4E-79 745.9 42.9 494 79-666 14-513 (517)
8 3etc_A AMP-binding protein; ad 100.0 9.6E-74 3.3E-78 745.7 48.4 500 81-665 56-578 (580)
9 1mdb_A 2,3-dihydroxybenzoate-A 100.0 4E-74 1.4E-78 745.2 44.4 492 81-666 25-531 (539)
10 3g7s_A Long-chain-fatty-acid-- 100.0 8.2E-75 2.8E-79 754.1 36.7 510 80-667 18-543 (549)
11 4gr5_A Non-ribosomal peptide s 100.0 6E-75 2E-79 758.3 34.9 491 80-663 74-568 (570)
12 1t5h_X 4-chlorobenzoyl COA lig 100.0 2.8E-73 9.6E-78 732.1 46.1 489 81-665 2-503 (504)
13 1pg4_A Acetyl-COA synthetase; 100.0 1.4E-72 4.7E-77 745.2 50.0 513 81-667 76-622 (652)
14 3e7w_A D-alanine--poly(phospho 100.0 1.5E-72 5.1E-77 726.7 47.2 494 82-666 2-503 (511)
15 4dg8_A PA1221; ANL superfamily 100.0 2.3E-73 7.7E-78 745.7 38.4 486 1160-1749 24-513 (620)
16 3o83_A Peptide arylation enzym 100.0 6.6E-74 2.3E-78 744.1 32.9 498 80-667 29-541 (544)
17 3fce_A D-alanine--poly(phospho 100.0 1E-72 3.5E-77 728.9 41.8 498 82-668 2-506 (512)
18 3c5e_A Acyl-coenzyme A synthet 100.0 3.9E-72 1.3E-76 729.7 46.8 499 81-666 38-562 (570)
19 3ivr_A Putative long-chain-fat 100.0 4.7E-73 1.6E-77 731.5 37.5 488 80-667 5-502 (509)
20 2d1s_A Luciferase, luciferin 4 100.0 5.1E-72 1.7E-76 726.4 43.9 497 81-666 25-543 (548)
21 1v25_A Long-chain-fatty-acid-C 100.0 1E-72 3.5E-77 732.4 35.6 507 80-666 17-536 (541)
22 3ni2_A 4-coumarate:COA ligase; 100.0 9.3E-72 3.2E-76 723.2 43.0 498 1163-1748 22-534 (536)
23 3l8c_A D-alanine--poly(phospho 100.0 2.8E-72 9.7E-77 726.9 37.8 497 81-667 4-513 (521)
24 3kxw_A Saframycin MX1 syntheta 100.0 1.9E-71 6.4E-76 731.6 44.9 554 80-673 10-574 (590)
25 3rix_A Luciferase, luciferin 4 100.0 2.9E-72 1E-76 730.3 35.6 502 80-666 19-541 (550)
26 2vsq_A Surfactin synthetase su 100.0 2E-72 6.8E-77 798.9 36.8 499 1153-1747 454-958 (1304)
27 4fuq_A Malonyl COA synthetase; 100.0 1.9E-71 6.3E-76 713.9 42.0 479 1179-1748 11-499 (503)
28 2v7b_A Benzoate-coenzyme A lig 100.0 7.9E-72 2.7E-76 723.6 38.8 490 81-662 24-528 (529)
29 1mdb_A 2,3-dihydroxybenzoate-A 100.0 1.3E-71 4.6E-76 721.6 39.6 494 1163-1757 25-538 (539)
30 3nyq_A Malonyl-COA ligase; A/B 100.0 9.5E-72 3.3E-76 716.3 34.8 471 81-662 22-504 (505)
31 3tsy_A Fusion protein 4-coumar 100.0 1.8E-71 6.1E-76 770.6 38.0 507 80-667 60-583 (979)
32 3ipl_A 2-succinylbenzoate--COA 100.0 1E-70 3.6E-75 708.5 42.4 482 82-666 2-497 (501)
33 1ry2_A Acetyl-coenzyme A synth 100.0 1.8E-70 6.1E-75 724.8 45.2 514 81-666 82-637 (663)
34 3g7s_A Long-chain-fatty-acid-- 100.0 2.2E-71 7.5E-76 721.8 35.5 506 1161-1750 17-543 (549)
35 3rg2_A Enterobactin synthase c 100.0 2.6E-70 8.7E-75 721.0 44.9 492 1162-1749 26-534 (617)
36 4gr5_A Non-ribosomal peptide s 100.0 7.7E-72 2.6E-76 728.9 29.6 488 1162-1746 74-568 (570)
37 1amu_A GRSA, gramicidin synthe 100.0 7.8E-71 2.7E-75 716.4 38.2 485 1162-1747 38-527 (563)
38 3kxw_A Saframycin MX1 syntheta 100.0 6E-70 2.1E-74 717.2 44.3 552 1162-1755 10-573 (590)
39 3r44_A Fatty acyl COA syntheta 100.0 2.1E-70 7.3E-75 706.5 38.8 493 1160-1749 13-513 (517)
40 1t5h_X 4-chlorobenzoyl COA lig 100.0 1.1E-69 3.9E-74 698.5 42.4 486 1164-1748 3-503 (504)
41 3etc_A AMP-binding protein; ad 100.0 1.2E-69 4.2E-74 707.0 42.1 492 1165-1749 58-579 (580)
42 3o83_A Peptide arylation enzym 100.0 2.5E-70 8.7E-75 710.4 32.5 490 1162-1750 29-541 (544)
43 3rix_A Luciferase, luciferin 4 100.0 1E-69 3.4E-74 706.4 35.3 501 1160-1750 17-542 (550)
44 1pg4_A Acetyl-COA synthetase; 100.0 1.9E-68 6.5E-73 705.7 48.0 497 1180-1750 88-622 (652)
45 2d1s_A Luciferase, luciferin 4 100.0 5.8E-69 2E-73 697.7 39.5 490 1164-1753 26-546 (548)
46 3ite_A SIDN siderophore synthe 100.0 1E-69 3.5E-74 709.3 31.9 497 80-667 19-544 (562)
47 3c5e_A Acyl-coenzyme A synthet 100.0 4.9E-68 1.7E-72 691.1 46.1 498 1164-1748 39-561 (570)
48 3ivr_A Putative long-chain-fat 100.0 4.3E-69 1.5E-73 694.5 32.5 482 1162-1751 5-503 (509)
49 3e7w_A D-alanine--poly(phospho 100.0 3E-68 1E-72 686.5 39.0 491 1166-1750 4-504 (511)
50 1v25_A Long-chain-fatty-acid-C 100.0 7.2E-69 2.5E-73 696.3 33.3 502 1163-1748 18-535 (541)
51 3gqw_A Fatty acid AMP ligase; 100.0 2.9E-68 9.9E-73 699.8 39.0 533 80-666 20-563 (576)
52 3fce_A D-alanine--poly(phospho 100.0 1.2E-68 4.2E-73 690.8 33.9 494 1166-1752 4-507 (512)
53 3nyq_A Malonyl-COA ligase; A/B 100.0 5.2E-68 1.8E-72 681.6 38.1 472 1162-1745 21-504 (505)
54 1ry2_A Acetyl-coenzyme A synth 100.0 8.8E-68 3E-72 699.1 38.1 500 1179-1750 93-638 (663)
55 3l8c_A D-alanine--poly(phospho 100.0 2.4E-68 8.2E-73 690.1 30.5 495 1164-1752 5-515 (521)
56 3tsy_A Fusion protein 4-coumar 100.0 5.6E-68 1.9E-72 735.6 35.7 498 1162-1749 60-582 (979)
57 2v7b_A Benzoate-coenzyme A lig 100.0 8.8E-67 3E-71 676.3 39.8 468 1181-1745 36-528 (529)
58 3ipl_A 2-succinylbenzoate--COA 100.0 2.7E-66 9.1E-71 667.5 35.6 475 1164-1749 2-497 (501)
59 3gqw_A Fatty acid AMP ligase; 100.0 2.1E-65 7.3E-70 672.5 44.5 535 1163-1750 21-564 (576)
60 3ite_A SIDN siderophore synthe 100.0 1.2E-66 4E-71 680.4 23.1 496 1162-1756 19-550 (562)
61 3t5a_A Long-chain-fatty-acid-- 100.0 1.9E-57 6.4E-62 582.9 37.7 442 80-554 23-480 (480)
62 3t5a_A Long-chain-fatty-acid-- 100.0 3.8E-55 1.3E-59 561.5 34.0 440 1160-1647 21-480 (480)
63 4gs5_A Acyl-COA synthetase (AM 100.0 6.5E-50 2.2E-54 488.1 23.5 313 253-666 36-354 (358)
64 4gs5_A Acyl-COA synthetase (AM 100.0 1.1E-47 3.6E-52 468.6 21.5 310 1328-1749 36-354 (358)
65 2y4o_A Phenylacetate-coenzyme 100.0 6.8E-46 2.3E-50 469.2 26.0 400 172-659 3-437 (443)
66 3qov_A Phenylacetate-coenzyme 100.0 9.5E-45 3.3E-49 457.8 28.3 325 250-658 81-429 (436)
67 2y27_A Phenylacetate-coenzyme 100.0 1.1E-44 3.7E-49 457.4 23.1 326 250-659 86-432 (437)
68 3qov_A Phenylacetate-coenzyme 100.0 2.5E-43 8.6E-48 444.8 29.3 333 1326-1741 82-429 (436)
69 2y4o_A Phenylacetate-coenzyme 100.0 1.7E-43 5.8E-48 447.3 25.1 332 1325-1743 88-438 (443)
70 2y27_A Phenylacetate-coenzyme 100.0 1.4E-42 4.7E-47 438.1 23.8 329 1325-1742 86-432 (437)
71 3hgu_A EHPF; phenazine, antibi 100.0 3.7E-29 1.3E-33 307.8 18.2 237 251-564 88-368 (369)
72 3hgu_A EHPF; phenazine, antibi 99.9 4.1E-27 1.4E-31 289.6 16.7 248 1325-1657 87-368 (369)
73 3lax_A Phenylacetate-coenzyme 99.3 1.3E-12 4.4E-17 128.7 8.3 92 1646-1740 1-101 (109)
74 3gxs_A Phenylacetate-coenzyme 99.3 3E-12 1E-16 125.8 8.5 93 1646-1741 1-102 (109)
75 3lax_A Phenylacetate-coenzyme 99.3 9.5E-12 3.3E-16 122.4 10.0 94 553-657 1-101 (109)
76 3gxs_A Phenylacetate-coenzyme 99.2 3.2E-11 1.1E-15 118.3 10.4 94 553-658 1-102 (109)
77 4b2g_A GH3-1 auxin conjugating 98.5 2.8E-06 9.7E-11 106.3 19.5 62 487-577 393-458 (609)
78 4eql_A 4-substituted benzoates 98.4 3.2E-06 1.1E-10 105.9 16.5 64 487-579 381-448 (581)
79 4epl_A Jasmonic acid-amido syn 98.3 9E-06 3.1E-10 101.5 17.9 63 486-577 387-453 (581)
80 4b2g_A GH3-1 auxin conjugating 98.2 6.3E-06 2.1E-10 103.2 12.8 65 1561-1670 391-457 (609)
81 4eql_A 4-substituted benzoates 98.1 2.1E-05 7.2E-10 98.5 16.1 66 1561-1671 379-446 (581)
82 4epl_A Jasmonic acid-amido syn 98.0 0.00011 3.7E-09 91.8 19.5 66 1561-1671 386-453 (581)
83 4f6l_B AUSA reductase domain p 27.6 13 0.00044 46.4 0.0 31 730-763 66-96 (508)
No 1
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=3.2e-80 Score=878.81 Aligned_cols=542 Identities=17% Similarity=0.233 Sum_probs=448.7
Q ss_pred chhhhHHHHHHHHhccCCCCCCCcccccCcHHHHHHhcCCCCCCCCCCCCCCcCCCCCCccccCCCcchhHHHHHHHHhh
Q psy14338 13 RWKVSAKIQQLLNTLKRPKRRPLPEFYEDDDIELEIAANPKDPNAPKPEGGVMTPAPGESLVVPSGLPRNLEAAIQRYGS 92 (1761)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~a~ 92 (1761)
..++..+|.+++..+...+..++.+.......+.......+++..... ...+++++|+++++
T Consensus 414 i~~l~~~~~~lL~~l~~~p~~~~~~~~~l~~~e~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~~~ 475 (1304)
T 2vsq_A 414 ILRLKSQLLTAIQQLIQNPDQPVSTINLVDDREREFLLTGLNPPAQAH------------------ETKPLTYWFKEAVN 475 (1304)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSBGGGCCCCCHHHHHHHHTTTSCCCCCC------------------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCccccccccCCCCHHHHHHHHHhcCCCCCCC------------------CCCCHHHHHHHHHH
Confidence 356778888888888777777777766555444433233333321100 02579999999999
Q ss_pred hcCCCcEEEEECCCCceeEEEeHHHHHHHHHHHHHHhhcCCCCccccCCCCCCCEEEEEccCCCchhHHHHHHHHHHhCC
Q psy14338 93 ATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAGI 172 (1761)
Q Consensus 93 ~~pd~~Av~~~d~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~~~~~~Gv~~g~~V~l~~~~s~~~~~vva~lAvlkaG~ 172 (1761)
++||++|+++++ +++||+||+++++++|++|+ +.|+++|++|+|+++|| +++++++|||+|+|+
T Consensus 476 ~~p~~~Av~~~~------~~lTY~eL~~~a~~lA~~L~--------~~Gv~~g~~V~i~~~~s--~~~vv~~lailkaG~ 539 (1304)
T 2vsq_A 476 ANPDAPALTYSG------QTLSYRELDEEANRIARRLQ--------KHGAGKGSVVALYTKRS--LELVIGILGVLKAGA 539 (1304)
T ss_dssp HCTTSEEEESSS------CEEEHHHHHHHHHHHHHHHH--------HTTCCTTCEEEECCCSS--HHHHHHHHHHHHTTC
T ss_pred hCCCCeEEEECC------eeEcHHHHHHHHHHHHHHHH--------hcCcCCcCEEEEEeCCC--HHHHHHHHHHHHHCC
Confidence 999999999765 58999999999999999999 89999999999999999 999999999999999
Q ss_pred eEEecCCCCCcCccchhHHHHHHhcCCCcEEEEcccccccCcccccc-cceeccCCCcceeEEeccccCCCCCCCCCCCC
Q psy14338 173 VPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAG-EVVAFKGWPKLTWFVTEHLAKTPKDWAPQPRL 251 (1761)
Q Consensus 173 ~~vpldp~~p~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1761)
+||||||.+|.+ |+.+|+++++++++|++......+...... ..+..++. ..... ....+....
T Consensus 540 ~~vpldp~~p~~-----rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~--~~~~~~~~~ 604 (1304)
T 2vsq_A 540 AYLPVDPKLPED-----RISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQ--------TRFEE--QASDPATAI 604 (1304)
T ss_dssp EEEECCTTSCHH-----HHHHHHHHHTCCEEEECSTTCTTSTTCCCCSEEEESSCG--------GGGGS--CSSCCCCCC
T ss_pred EEEEECCCCHHH-----HHHHHHHHcCCCEEEECcchhhhhhccCCCCcEEEeccc--------ccccc--ccCCCCCCC
Confidence 999999999976 999999999999999998765543322111 11111100 00011 111223346
Q ss_pred CCCCcEEEEecCCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCCeEEEccCCcchhhhHHHHHHHHhcCcEEEEeCCcc
Q psy14338 252 TDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFKRETGLWHSVLTSVLNGMHAVYIPYAL 331 (1761)
Q Consensus 252 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~i~~~L~~G~~lvi~~~~~ 331 (1761)
.|+++|||+|||||||+||||+++|+++++. .+....++++++|++++++|++||+++++ +|.+|+.|+++|++++..
T Consensus 605 ~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~-~~~~l~~G~~l~~~~~~~ 682 (1304)
T 2vsq_A 605 DPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFD-FYASMLNAARLIIADEHT 682 (1304)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHH-HHHHHTTTCEEEECCGGG
T ss_pred CCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHH-HHHHHHcCCEEEECChhh
Confidence 7899999999999999999999999999876 45556678999999999999999999996 999999999999998654
Q ss_pred ccCCHHHHHHHHHhcCceEEEecCHHHHHHhhcCCCCCCCCCCceeEEEecCCCccCCHHHHHHHHHHhhhCCCCCCccc
Q psy14338 332 MKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGANPWSLSSCDQFLSVFQSKGLRPDAIC 411 (1761)
Q Consensus 332 ~~~~~~~l~~~i~~~~vt~~~~~p~~~~~~ll~~~~~~~~~l~~Lr~v~~gg~Ge~l~~~~~~~~~~~~~~~g~~~~~l~ 411 (1761)
..++..+.+.|++++||+++++| +++..+.... ...+++||.+++| ||+++++++++|.+.++.. +++
T Consensus 683 -~~~~~~l~~~i~~~~vt~~~~~p-~~~~~l~~~~---~~~~~~lr~~~~g--Ge~l~~~~~~~~~~~~~~~-----~l~ 750 (1304)
T 2vsq_A 683 -LLDTERLTDLILQENVNVMFATT-ALFNLLTDAG---EDWMKGLRCILFG--GERASVPHVRKALRIMGPG-----KLI 750 (1304)
T ss_dssp -TTCHHHHHHHHHHHTCCEEEEEH-HHHHHHHHHC---SHHHHTCSEEEEE--SSCCCHHHHHHHHHHHCTT-----CEE
T ss_pred -cCCHHHHHHHHHHcCCcEEEccH-HHHHHHHhhc---hhcCCCccEEEEe--cCCCCHHHHHHHHHhCCCC-----EEE
Confidence 67999999999999999999996 4777665432 2236789999999 9999999999999987532 499
Q ss_pred cccccccccceEeecCCCCCcccCCCccccccCcccceeeecCCCccCcccccccCCCCCCcEEEEEeCCCCcccCCCCC
Q psy14338 412 PCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQVMPGCIMTVVKMDSPSYLCKTDE 491 (1761)
Q Consensus 412 n~YG~TE~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~I~d~~~~~~~~p~G~ 491 (1761)
|+||||||+++++..... .........+||+|++|++++|+|++++ +||.|+
T Consensus 751 n~YG~TE~~~~~~~~~~~--------------------------~~~~~~~~~~iG~p~~~~~~~i~d~~~~--~~p~G~ 802 (1304)
T 2vsq_A 751 NCYGPTEGTVFATAHVVH--------------------------DLPDSISSLPIGKPISNASVYILNEQSQ--LQPFGA 802 (1304)
T ss_dssp EEECCGGGSSCSEEEECC--------------------------CCCSSCSSCCCBEECTTEEEEEECTTSC--BCCTTC
T ss_pred EeEChhHHhHHheeeecc--------------------------CccccCCCCCCceeeCCCEEEEECCCcC--CCCCCC
Confidence 999999999876654311 0001223578999999999999999987 699999
Q ss_pred ceEEEEecCCccccccCCCccccccccccccccCCCccCCCceEeecceEEEeCCCeEEEEeccCCeEEECCcccChHHH
Q psy14338 492 VGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGFLGPGGLVFVCGSRDGLMTVTGRKHNADDI 571 (1761)
Q Consensus 492 ~GEL~i~G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rIe~~eI 571 (1761)
+|||||+|+++++||+|+|++|+++|+++||.+ ++|||||||+|||++||+|+|+||+|+|||+||+||||+||
T Consensus 803 ~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~------g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eI 876 (1304)
T 2vsq_A 803 VGELCISGMGVSKGYVNRADLTKEKFIENPFKP------GETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEI 876 (1304)
T ss_dssp CEEEEEEETTCCCCBTTCHHHHHHHEEECTTST------TCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHH
T ss_pred ceEEEEeccccCccccCCcccchhhhccCCCCC------CCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHH
Confidence 999999999999999999999999999999853 37999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCccccccceEEEEEEec-CCCceEEEEEEeCCCCCHHHHHHHHHHHHHHhhhcceeeeeEEEEeCCCCccCC
Q psy14338 572 IATVLAVEPMKFIYRGRIAVFSIRV-LRDERICVIAEQRPDCSEEESFQWMSRVLQAVDSIHQVGLYCLALVPPNYLPKT 650 (1761)
Q Consensus 572 E~~l~~~~~v~~~~~~~a~v~~~~~-~~~~~l~a~v~~~~~~~~~~l~~~l~~~Lp~y~~P~~i~~~~v~~v~~~~lP~t 650 (1761)
|++|.++++| .+|+|++.++ .+++.++||++.....+.++++++|+++||.||+|+.+ +.+++||+|
T Consensus 877 E~~l~~~p~V-----~~a~V~~~~~~~~~~~l~a~vv~~~~~~~~~l~~~l~~~Lp~ymvP~~~-------~~l~~lP~t 944 (1304)
T 2vsq_A 877 EKQLQEYPGV-----KDAVVVADRHESGDASINAYLVNRTQLSAEDVKAHLKKQLPAYMVPQTF-------TFLDELPLT 944 (1304)
T ss_dssp HHHHHHSSSC-----CEEEEEEECCSSSCCEEEEEEECSSSSCHHHHHHHHHHHSCGGGSCSEE-------EEESCCCCC
T ss_pred HHHHHhCCCC-----ceEEEEEEecCCCCEEEEEEEeCCCCCCHHHHHHHHHHhChHhhhccEE-------EEecccCCC
Confidence 9999999988 6999999875 46678999999888888999999999999999999986 566999999
Q ss_pred CCCcccHHHHHHH
Q psy14338 651 PLGGIHLSECKRR 663 (1761)
Q Consensus 651 ~~GKidR~~L~~~ 663 (1761)
+||||||++|++.
T Consensus 945 ~~GKidR~~L~~~ 957 (1304)
T 2vsq_A 945 TNGKVNKRLLPKP 957 (1304)
T ss_dssp SSCSSCCSCCCCC
T ss_pred CCcccCHhhcCCc
Confidence 9999999998754
No 2
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1.4e-79 Score=804.55 Aligned_cols=489 Identities=16% Similarity=0.159 Sum_probs=406.8
Q ss_pred chhHHHHHHHHhhhcCCCcEEEEECCCCceeEEEeHHHHHHHHHHHHHHhhcCCCCccccCCCCCCCEEEEEccCCCchh
Q psy14338 80 PRNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPIN 159 (1761)
Q Consensus 80 ~~~l~~~~~~~a~~~pd~~Av~~~d~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~~~~~~Gv~~g~~V~l~~~~s~~~~ 159 (1761)
..+++++|+++|+++||++|+++++ +++||+||+++++++|++|+ +.|+++|++|+|+++|| ++
T Consensus 26 ~~tl~~~~~~~a~~~Pd~~Av~~~~------~~lTY~eL~~~a~~lA~~L~--------~~Gv~~g~~V~i~~~~s--~~ 89 (620)
T 4dg8_A 26 HPTVVARFSEMAALHPHREAIRDRF------GSVDYRQLLDSAEQLSDYLL--------EHYPQPGVCLGVYGEYS--RE 89 (620)
T ss_dssp SCCHHHHHHHHHHHCTTSEEEEETT------EEEEHHHHHHHHHHHHHHHH--------HHCCSSCCEEEEESSSC--HH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEcCC------CcCcHHHHHHHHHHHHHHHH--------HcCCCCCCEEEEEeCCC--HH
Confidence 4689999999999999999999866 69999999999999999999 89999999999999999 99
Q ss_pred HHHHHHHHHHhCCeEEecCCCCCcCccchhHHHHHHhcCCCcEEEEcccccccCcccccccceeccCCCcceeEEecccc
Q psy14338 160 FLCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKLTWFVTEHLA 239 (1761)
Q Consensus 160 ~vva~lAvlkaG~~~vpldp~~p~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (1761)
+++++|||+|+|++||||||.+|.+ |+.+++++++++++|+++.......... ... .....
T Consensus 90 ~vva~lailkaGa~~vpld~~~p~~-----~l~~il~~~~~~~vl~~~~~~~~~~~~~---~~~-----------~~~~~ 150 (620)
T 4dg8_A 90 SITCLLAILLSGHHYLYIDLKQPAA-----WNAELCRQVDCRLILDCSTTPTPANGLP---CVP-----------VRHLP 150 (620)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHH-----HHHHHHHHHTEEEEEECCSSCCCCTTSC---EEE-----------GGGCC
T ss_pred HHHHHHHHHHhCCEEEeeCccChHH-----HHHHHHHhCCCcEEEecCcccccccCCc---eee-----------eccCC
Confidence 9999999999999999999999976 9999999999999997765433221110 000 01111
Q ss_pred CCCCCCCCCCCCCCCCcEEEEecCCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCCeEEEccCCcchhhhHHHHHHHHh
Q psy14338 240 KTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFKRETGLWHSVLTSVL 319 (1761)
Q Consensus 240 ~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~i~~~L~ 319 (1761)
.. ..........++|+|||+|||||||+||||+++|+++.+.+.+ ...++++++|++++++|++|++++++ +|.+|+
T Consensus 151 ~~-~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~ 227 (620)
T 4dg8_A 151 AA-PASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLE-IWGALL 227 (620)
T ss_dssp CC-CCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHH-HHHHHT
T ss_pred cC-CccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHH-HHHHHh
Confidence 11 1111223457899999999999999999999999999887765 55678999999999999999999996 999999
Q ss_pred cCcEEEEeCCccccCCHHHHHHHHHhcCceEEEecCHHHHHHhhcCCCCCCCCCCceeEEEecCCCccCCHHHHHHHHHH
Q psy14338 320 NGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGANPWSLSSCDQFLSV 399 (1761)
Q Consensus 320 ~G~~lvi~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~~ll~~~~~~~~~l~~Lr~v~~gg~Ge~l~~~~~~~~~~~ 399 (1761)
.|+++++.+.. .+++..+.+.|+++++|+++++| +++..++... ...+++||.+++| ||+++++.+++|.+.
T Consensus 228 ~G~~~v~~~~~--~~~~~~~~~~i~~~~vt~~~~~P-s~~~~l~~~~---~~~l~~lr~v~~g--Ge~l~~~~~~~~~~~ 299 (620)
T 4dg8_A 228 NGGCCVLNDLG--PLDPGVLRQLIGERGADSAWLTA-SLFNTLVDLD---PDCLGGLRQLLTG--GDILSVPHVRRALLR 299 (620)
T ss_dssp TTCEEEECCSS--SCCHHHHHHHHHTTCCCEEEEEH-HHHHHHHHHC---GGGGTTCSEEEEE--SSCCCHHHHHHHHHH
T ss_pred cCCEEEeCccc--cCCHHHHHHHHHHhCCcEEEccH-HHHHHHHhcC---hhhCCCccEEEEE--eCcCCHHHHHHHHHh
Confidence 99999997532 67999999999999999999996 4777776532 3467899999999 999999999999887
Q ss_pred hhhCCCCCCccccccccccccceEeecCCCCCcccCCCccccccCcccceeeecCCCccCcccccccCCCCCCcEEEEEe
Q psy14338 400 FQSKGLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQVMPGCIMTVVK 479 (1761)
Q Consensus 400 ~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~I~d 479 (1761)
++. + +++|.||+||++++++..... .........++|+|++|++++|+|
T Consensus 300 ~~~--~---~l~n~YG~TE~~~~~~~~~~~--------------------------~~~~~~~~~~iG~p~~~~~~~i~d 348 (620)
T 4dg8_A 300 HPR--L---HLVNGYGPTENTTFTCCHVVT--------------------------DDDLEEDDIPIGKAIAGTAVLLLD 348 (620)
T ss_dssp CTT--C---EEEEEECCGGGCSCSEEEECC--------------------------TGGGGSSSCCCBEECTTEEEEEEC
T ss_pred CCC--e---EEEeeEchhhhhhheEEEecc--------------------------ccccCCCCCCceecccCcEEEEEC
Confidence 653 3 599999999998766543311 000122457899999999999999
Q ss_pred CCCCcccCCCCCceEEEEecCCccccccCCCccccccccccccccCCCccCCCceEeecceEEEeCCCeEEEEeccCCeE
Q psy14338 480 MDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGFLGPGGLVFVCGSRDGLM 559 (1761)
Q Consensus 480 ~~~~~~~~p~G~~GEL~i~G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qv 559 (1761)
+++++ ++|.|++|||||+|+++++||||+|++|+++|+.+|+... ..|||||||+|++++||+|+|+||+||||
T Consensus 349 ~~~~~-~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~-----~~~~yrTGDl~~~~~dG~l~~~GR~dd~I 422 (620)
T 4dg8_A 349 EHGQE-IAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGR-----LLRAYRTGDRARYDEQGRLRFIGRGDGQV 422 (620)
T ss_dssp TTSCB-CCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTE-----EEEEEEEEEEEEECTTSCEEEEECSSSEE
T ss_pred ccCCC-CCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCC-----CceEEeCCCEEEECCCCeEEEEccCCCEE
Confidence 99984 5899999999999999999999999999999999885211 13899999999999999999999999999
Q ss_pred EECCcccChHHHHHHHHhcCCccccccceEEEEEEecCCCceEEEEEEeCCCCCHHHHHHHHHHHHHHhhhcceeeeeEE
Q psy14338 560 TVTGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIRVLRDERICVIAEQRPDCSEEESFQWMSRVLQAVDSIHQVGLYCL 639 (1761)
Q Consensus 560 ki~G~rIe~~eIE~~l~~~~~v~~~~~~~a~v~~~~~~~~~~l~a~v~~~~~~~~~~l~~~l~~~Lp~y~~P~~i~~~~v 639 (1761)
|++|+||+|+|||++|.+++.| .+|+|++.++.....++++++... ++++++++++||.||+|+.+
T Consensus 423 k~~G~ri~~~eIE~~l~~~p~V-----~~a~Vv~~~~~~~~~lv~~~~~~~----~~~~~~l~~~Lp~y~~P~~~----- 488 (620)
T 4dg8_A 423 KLNGYRLDLPALEQRFRRQPGI-----LDCALLVRERNGVKQLLCAWTGKA----DASPQALLRQLPTWQRPHAC----- 488 (620)
T ss_dssp EETTEEEEHHHHHHHHHTSTTE-----EEEEEEEEEETTEEEEEEEEEECT----TCCCHHHHHHSCGGGSCSEE-----
T ss_pred EECCEEcCHHHHHHHHHhCCCc-----cEEEEEEEeCCCceEEEEEEecCh----HHHHHHHHHhChhhcCCcEE-----
Confidence 9999999999999999999888 799999988766566777666543 33456778899999999986
Q ss_pred EEeCCCCccCCCCCcccHHHHHHHHHcC
Q psy14338 640 ALVPPNYLPKTPLGGIHLSECKRRFLEG 667 (1761)
Q Consensus 640 ~~v~~~~lP~t~~GKidR~~L~~~~~~~ 667 (1761)
+.+++||+|+||||||++|++.+.+.
T Consensus 489 --~~v~~lP~t~~GKidR~~L~~~~~~~ 514 (620)
T 4dg8_A 489 --VRVEALPLTAHGKLDRAALLRRLEEP 514 (620)
T ss_dssp --EECSSCCCC----CCHHHHHHHTCSC
T ss_pred --EEECcCCCCcccCHhHHHHhhccccc
Confidence 66799999999999999999887543
No 3
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=9.2e-76 Score=762.68 Aligned_cols=487 Identities=15% Similarity=0.200 Sum_probs=409.6
Q ss_pred hhHHHHHHHHhhhcCCCcEEEEECCCCceeEEEeHHHHHHHHHHHHHHhhcCCCCccccCCCCCCCEEEEEccCCCchhH
Q psy14338 81 RNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINF 160 (1761)
Q Consensus 81 ~~l~~~~~~~a~~~pd~~Av~~~d~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~~~~~~Gv~~g~~V~l~~~~s~~~~~ 160 (1761)
.+++++|+++++++||++|+++.+ +++||+||+++++++|+.|+ +.|+++||+|+|+++|+ +++
T Consensus 39 ~~l~~~l~~~a~~~p~~~Al~~~~------~~~Ty~eL~~~~~~lA~~L~--------~~Gv~~gd~V~i~~~n~--~e~ 102 (563)
T 1amu_A 39 KTIHQLFEEQVSKRPNNVAIVCEN------EQLTYHELNVKANQLARIFI--------EKGIGKDTLVGIMMEKS--IDL 102 (563)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETT------EEEEHHHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCSS--HHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEeCC------ceecHHHHHHHHHHHHHHHH--------HcCCCCCCEEEEEeCCC--HHH
Confidence 579999999999999999999754 69999999999999999999 88999999999999999 999
Q ss_pred HHHHHHHHHhCCeEEecCCCCCcCccchhHHHHHHhcCCCcEEEEcccccccCcccccc-cceeccCCCcceeEEecccc
Q psy14338 161 LCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAG-EVVAFKGWPKLTWFVTEHLA 239 (1761)
Q Consensus 161 vva~lAvlkaG~~~vpldp~~p~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 239 (1761)
++++|||+++|+++||+||.++.+ |+.+++++++++++|+++.....+...... .+.... .+...
T Consensus 103 ~~~~lA~~~~Gav~vpl~~~~~~~-----~l~~il~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 168 (563)
T 1amu_A 103 FIGILAVLKAGGAYVPIDIEYPKE-----RIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFE---------EDTIK 168 (563)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHH-----HHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECC---------CSTTT
T ss_pred HHHHHHHHHhCCEEEEeCCCCcHH-----HHHHHHHhcCCCEEEEcCchhhhhhhccccCceeeec---------chhhc
Confidence 999999999999999999999976 999999999999999998654332221110 011100 00011
Q ss_pred CCCCCCCCCCCCCCCCcEEEEecCCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCCeEEEccCCcchhhhHHHHHHHHh
Q psy14338 240 KTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFKRETGLWHSVLTSVL 319 (1761)
Q Consensus 240 ~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~i~~~L~ 319 (1761)
.. ..........++|+|||+|||||||+||||+++|+++.+.+.+....++++++|++++++|++|+++++. ++.+|+
T Consensus 169 ~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~ 246 (563)
T 1amu_A 169 IR-EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWE-MFMALL 246 (563)
T ss_dssp TS-CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHH-HHHHHT
T ss_pred cc-cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHH-HHHHHH
Confidence 00 1111223456899999999999999999999999999999998888899999999999999999999985 999999
Q ss_pred cCcEEEEeCCccccCCHHHHHHHHHhcCceEEEecCHHHHHHhhcCCCCCCCCCCceeEEEecCCCccCCHHHHHHHHHH
Q psy14338 320 NGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGANPWSLSSCDQFLSV 399 (1761)
Q Consensus 320 ~G~~lvi~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~~ll~~~~~~~~~l~~Lr~v~~gg~Ge~l~~~~~~~~~~~ 399 (1761)
.|+++++.+... .+++..+++.|+++++|++.++| +++..+.. ..+++||.+++| |+++++++.++|.+.
T Consensus 247 ~G~~~v~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P-~~~~~l~~------~~~~~lr~~~~g--G~~l~~~~~~~~~~~ 316 (563)
T 1amu_A 247 TGASLYIILKDT-INDFVKFEQYINQKEITVITLPP-TYVVHLDP------ERILSIQTLITA--GSATSPSLVNKWKEK 316 (563)
T ss_dssp TTCEEEECCHHH-HTCHHHHHHHHHHTTCCEEEECH-HHHTTSCT------TTCCSCSEEEEE--SSCCCHHHHHHHTTT
T ss_pred CCCEEEEcChHh-hcCHHHHHHHHHHcCCcEEEeCH-HHHHHHHh------cccccccEEEEE--EecCCHHHHHHHHhC
Confidence 999999988432 37899999999999999999986 46655432 246899999999 999999999998764
Q ss_pred hhhCCCCCCccccccccccccceEeecCCCCCcccCCCccccccCcccceeeecCCCccCcccccccCCCCCCcEEEEEe
Q psy14338 400 FQSKGLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQVMPGCIMTVVK 479 (1761)
Q Consensus 400 ~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~I~d 479 (1761)
+ .++|.||+||++++++..... ........++|+|++|++++|+|
T Consensus 317 ~--------~~~~~YG~TE~~~~~~~~~~~---------------------------~~~~~~~~~vG~p~~~~~v~i~d 361 (563)
T 1amu_A 317 V--------TYINAYGPTETTICATTWVAT---------------------------KETIGHSVPIGAPIQNTQIYIVD 361 (563)
T ss_dssp S--------EEEEEECCGGGSSCSEEEECC---------------------------SSCCCSSCCCBEECTTEEEEEEC
T ss_pred C--------eEEEEECcCHHhHhheeeecc---------------------------cccCCCCCcccceeCCCEEEEEC
Confidence 2 499999999998655433211 00012356899999999999999
Q ss_pred CCCCcccCCCCCceEEEEecCCccccccCCCccccccccccccccCCCccCCCceEeecceEEEeCCCeEEEEeccCCeE
Q psy14338 480 MDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGFLGPGGLVFVCGSRDGLM 559 (1761)
Q Consensus 480 ~~~~~~~~p~G~~GEL~i~G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qv 559 (1761)
++++ ++|.|++|||+|+|+++++||||+|++|+++|..+|+.. +++||||||+|++|+||+|+|+||+||||
T Consensus 362 ~~~~--~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~------g~~w~~TGDlg~~d~dG~l~i~GR~~d~I 433 (563)
T 1amu_A 362 ENLQ--LKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVP------GEKLYKTGDQARWLSDGNIEYLGRIDNQV 433 (563)
T ss_dssp TTSC--BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSST------TSEEEEEEEEEEECTTSCEEEEEEGGGEE
T ss_pred CCcC--CCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCC------CCEEEecCCEEEEcCCCeEEEeccccCEE
Confidence 9987 599999999999999999999999999999999888753 37899999999999999999999999999
Q ss_pred EECCcccChHHHHHHHHhcCCccccccceEEEEEEecC-CCceEEEEEEeCCCCCHHHHHHHHHHHHHHhhhcceeeeeE
Q psy14338 560 TVTGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIRVL-RDERICVIAEQRPDCSEEESFQWMSRVLQAVDSIHQVGLYC 638 (1761)
Q Consensus 560 ki~G~rIe~~eIE~~l~~~~~v~~~~~~~a~v~~~~~~-~~~~l~a~v~~~~~~~~~~l~~~l~~~Lp~y~~P~~i~~~~ 638 (1761)
|++|+||+|.|||++|.+++.| .+|+|++.++. .++.++|+++.....+.++++++|+++||.||+|..+
T Consensus 434 k~~G~~V~p~eIE~~l~~~p~V-----~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~l~~~l~~~L~~y~~P~~i---- 504 (563)
T 1amu_A 434 KIRGHRVELEEVESILLKHMYI-----SETAVSVHKDHQEQPYLCAYFVSEKHIPLEQLRQFSSEELPTYMIPSYF---- 504 (563)
T ss_dssp EETTEEEEHHHHHHHHTTSTTE-----EEEEEEEEECTTSCEEEEEEEEESSCCCHHHHHHHHHHHSCGGGSCSEE----
T ss_pred EECCEEeCHHHHHHHHHhCCCc-----ceEEEEEeecCCCCeEEEEEEEeCCCCCHHHHHHHHHhhCchhhCCcEE----
Confidence 9999999999999999998888 79999998854 6778999999887888999999999999999999986
Q ss_pred EEEeCCCCccCCCCCcccHHHHHHHH
Q psy14338 639 LALVPPNYLPKTPLGGIHLSECKRRF 664 (1761)
Q Consensus 639 v~~v~~~~lP~t~~GKidR~~L~~~~ 664 (1761)
+.+++||+|+||||||++|++..
T Consensus 505 ---~~v~~lP~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 505 ---IQLDKMPLTSNGKIDRKQLPEPD 527 (563)
T ss_dssp ---EECSSCCBCTTSSBCGGGSCCCC
T ss_pred ---EEecccCCCCCcChhHHhcCCcc
Confidence 55699999999999999998643
No 4
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=5.8e-75 Score=753.16 Aligned_cols=502 Identities=19% Similarity=0.260 Sum_probs=420.8
Q ss_pred hhHHHHHHHHhhhcCCCcEEEEECCCCceeEEEeHHHHHHHHHHHHHHhhcCCCCccccCCCCCCCEEEEEccCCCchhH
Q psy14338 81 RNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINF 160 (1761)
Q Consensus 81 ~~l~~~~~~~a~~~pd~~Av~~~d~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~~~~~~Gv~~g~~V~l~~~~s~~~~~ 160 (1761)
.+++++|.++++++|+++|+++.+. | +++||+||+++++++|+.|+ +.|+++||+|+|+++|| +++
T Consensus 22 ~~l~~~l~~~a~~~p~~~a~~~~~~-~---~~~Ty~el~~~~~~lA~~L~--------~~Gv~~gd~V~i~~~~~--~~~ 87 (536)
T 3ni2_A 22 LPLHSYVLENLSNHSSKPCLINGAN-G---DVYTYADVELTARRVASGLN--------KIGIQQGDVIMLFLPSS--PEF 87 (536)
T ss_dssp CCHHHHHTTTGGGSTTSEEEEETTT-C---CEEEHHHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCSS--HHH
T ss_pred CcHHHHHHHHhhcCCCceEEEECCC-C---CEEEHHHHHHHHHHHHHHHH--------HcCCCCCCEEEEEcCCc--HHH
Confidence 5799999999999999999987532 2 58999999999999999999 89999999999999999 999
Q ss_pred HHHHHHHHHhCCeEEecCCCCCcCccchhHHHHHHhcCCCcEEEEcccccccCcccc---cccceeccCCCcceeEEecc
Q psy14338 161 LCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTA---AGEVVAFKGWPKLTWFVTEH 237 (1761)
Q Consensus 161 vva~lAvlkaG~~~vpldp~~p~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 237 (1761)
++++|||+|+|+++||+||.++.+ |+.+++++++++++|+++...+.+.... ...++..+..... ....+.
T Consensus 88 ~~~~la~~~~Gav~vpl~~~~~~~-----~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 161 (536)
T 3ni2_A 88 VLAFLGASHRGAIITAANPFSTPA-----ELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDG-CLHFSE 161 (536)
T ss_dssp HHHHHHHHHHTCEEEECCTTCCHH-----HHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSCCCTT-CEETHH
T ss_pred HHHHHHHHHhCCEEeccCCCCCHH-----HHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecCCCCC-ccCHHH
Confidence 999999999999999999999976 9999999999999999987654433221 1112222211111 001111
Q ss_pred ccCCCCCCCCCCCCCCCCcEEEEecCCCCCCceEEEEchHHHHHHHHHHHH----HcCCCCCCeEEEccCCcchhhhHHH
Q psy14338 238 LAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQ----ACHYTEGENMVCVLDFKRETGLWHS 313 (1761)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~~~~ 313 (1761)
+........+.....++|+|||+|||||||+||||+++|+++++.+.+... .+++.++|++++++|++|++++...
T Consensus 162 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~ 241 (536)
T 3ni2_A 162 LTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSI 241 (536)
T ss_dssp HHTSCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHT
T ss_pred HhhccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHH
Confidence 111111122334567899999999999999999999999999988776653 4568899999999999999999766
Q ss_pred HHHHHhcCcEEEEeCCccccCCHHHHHHHHHhcCceEEEecCHHHHHHhhcCCCCCCCCCCceeEEEecCCCccCCHHHH
Q psy14338 314 VLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGANPWSLSSC 393 (1761)
Q Consensus 314 i~~~L~~G~~lvi~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~~ll~~~~~~~~~l~~Lr~v~~gg~Ge~l~~~~~ 393 (1761)
++.+|..|+++++.+ .+++..+++.|+++++|++.++| +++..++........++++||.+++| ||++++++.
T Consensus 242 ~~~~l~~G~~~v~~~----~~~~~~~~~~i~~~~~t~~~~~P-~~~~~l~~~~~~~~~~l~~lr~i~~g--Ge~l~~~~~ 314 (536)
T 3ni2_A 242 MLCGLRVGAPILIMP----KFEIGSLLGLIEKYKVSIAPVVP-PVMMSIAKSPDLDKHDLSSLRMIKSG--GAPLGKELE 314 (536)
T ss_dssp HHHHHHHTCCEEECS----SCCHHHHHHHHHHHTCCEEEECH-HHHHHHHTCSCGGGSCCTTCCEEEEE--SSCCCHHHH
T ss_pred HHHHHhcCCEEEEcC----CCCHHHHHHHHHHhCCeEEEccH-HHHHHHHhCcccccCCCccceEEEEC--CCCCCHHHH
Confidence 899999999999998 68999999999999999999996 58888888776667789999999999 999999999
Q ss_pred HHHHHHhhhCCCCCCccccccccccccceEeecCCCCCcccCCCccccccCcccceeeecCCCccCcccccccCCCCCCc
Q psy14338 394 DQFLSVFQSKGLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQVMPGC 473 (1761)
Q Consensus 394 ~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~ 473 (1761)
++|.+.++.. .++|.||+||++.+++..... .........+++|+|++|+
T Consensus 315 ~~~~~~~~~~-----~l~~~YG~TE~~~~~~~~~~~-------------------------~~~~~~~~~~~~G~~~~~~ 364 (536)
T 3ni2_A 315 DTVRAKFPQA-----RLGQGYGMTEAGPVLAMCLAF-------------------------AKEPFDIKPGACGTVVRNA 364 (536)
T ss_dssp HHHHHHCTTS-----EEEEEEECGGGSSEEEECGGG-------------------------SSSCCCCCTTCCCEECSSC
T ss_pred HHHHHHCCCC-----Cccccccccccchhhhccccc-------------------------CCccccCCCCCeeEeCCCc
Confidence 9999988532 599999999998765533210 0001123467899999999
Q ss_pred EEEEEeCC-CCcccCCCCCceEEEEecCCccccccCCCccccccccccccccCCCccCCCceEeecceEEEeCCCeEEEE
Q psy14338 474 IMTVVKMD-SPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGFLGPGGLVFVC 552 (1761)
Q Consensus 474 ~~~I~d~~-~~~~~~p~G~~GEL~i~G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~~~~dG~l~~~ 552 (1761)
+++|+|++ ++ ++|.|++|||+|+|+++++||||+|+.|+++|. .+|||||||+|++++||+|+|+
T Consensus 365 ~~~i~d~~~~~--~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~------------~~g~~~TGDl~~~~~dG~l~~~ 430 (536)
T 3ni2_A 365 EMKIVDPETGA--SLPRNQPGEICIRGDQIMKGYLNDPEATSRTID------------KEGWLHTGDIGYIDDDDELFIV 430 (536)
T ss_dssp EEEEECTTTCC--BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBC------------TTSCEEEEEEEEECTTSCEEEE
T ss_pred EEEEEeCCCCc--CCCCCCccEEEEeCcccchhhcCChhHHHhhcc------------CCCceEcccEEEEcCCceEEEE
Confidence 99999965 54 699999999999999999999999999999993 4799999999999999999999
Q ss_pred eccCCeEEECCcccChHHHHHHHHhcCCccccccceEEEEEEec-CCCceEEEEEEeCCC--CCHHHHHHHHHHHHHHhh
Q psy14338 553 GSRDGLMTVTGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIRV-LRDERICVIAEQRPD--CSEEESFQWMSRVLQAVD 629 (1761)
Q Consensus 553 GR~d~qvki~G~rIe~~eIE~~l~~~~~v~~~~~~~a~v~~~~~-~~~~~l~a~v~~~~~--~~~~~l~~~l~~~Lp~y~ 629 (1761)
||+|||||++|+||+|.|||++|.+++.| .+|+|++.++ ..++.++|+++..++ .+.++++++|+++||.||
T Consensus 431 GR~dd~ik~~G~~v~p~eIE~~l~~~p~V-----~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~ 505 (536)
T 3ni2_A 431 DRLKELIKYKGFQVAPAELEALLIAHPEI-----SDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQVIFYK 505 (536)
T ss_dssp EECSCCEEETTEEECHHHHHHHHHTSTTE-----EEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGG
T ss_pred ecccceEEECCEEECHHHHHHHHHhCCCc-----ceEEEEeeecCCCCceeEEEEEecCCCCCCHHHHHHHHHHhccCCc
Confidence 99999999999999999999999999888 7999999985 467889999997654 678999999999999999
Q ss_pred hcceeeeeEEEEeCCCCccCCCCCcccHHHHHHHHH
Q psy14338 630 SIHQVGLYCLALVPPNYLPKTPLGGIHLSECKRRFL 665 (1761)
Q Consensus 630 ~P~~i~~~~v~~v~~~~lP~t~~GKidR~~L~~~~~ 665 (1761)
+|..+ +.+++||+|+||||||++|++.+.
T Consensus 506 ~p~~i-------~~v~~lP~t~~GKi~R~~L~~~~~ 534 (536)
T 3ni2_A 506 RIKRV-------FFIEAIPKAPSGKILRKNLKEKLA 534 (536)
T ss_dssp CCSEE-------EECSCCCBCTTSCBCHHHHHTC--
T ss_pred cccEE-------EEEecCCCCCCCCeeHHHHHHHhc
Confidence 99986 556999999999999999998664
No 5
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=3e-75 Score=749.17 Aligned_cols=490 Identities=17% Similarity=0.261 Sum_probs=413.5
Q ss_pred HHHHHHhhhcCCCcEEEEECCCCceeEEEeHHHHHHHHHHHHHHhhcCCCCccccCCCCCCCEEEEEccCCCchhHHHHH
Q psy14338 85 AAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAF 164 (1761)
Q Consensus 85 ~~~~~~a~~~pd~~Av~~~d~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~~~~~~Gv~~g~~V~l~~~~s~~~~~vva~ 164 (1761)
++|+++++++|+++|+...+.+| +++||+||+++++++|+.|+ ++|+++||+|+|+++|| +++++++
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~---~~~Ty~eL~~~~~~lA~~L~--------~~Gv~~gd~V~i~~~~~--~~~~~~~ 70 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAG---DKISYAELVARAGRVANVLV--------ARGLQVGDRVAAQTEKS--VEALVLY 70 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTC---CEEEHHHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCSC--HHHHHHH
T ss_pred hHHHHHHHhCCCCceEEEecCCC---cEEEHHHHHHHHHHHHHHHH--------HcCCCCCCEEEEECCCC--HHHHHHH
Confidence 57889999999999998654334 58999999999999999999 88999999999999999 9999999
Q ss_pred HHHHHhCCeEEecCCCCCcCccchhHHHHHHhcCCCcEEEEcccccccCcccccc---cceeccCCCcceeEEeccccCC
Q psy14338 165 YGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAG---EVVAFKGWPKLTWFVTEHLAKT 241 (1761)
Q Consensus 165 lAvlkaG~~~vpldp~~p~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 241 (1761)
|||+|+|+++||+||.+|.+ |+.+++++++++++|+++...+.+...... .+........ ... .+....
T Consensus 71 lA~~~~Ga~~vpl~~~~~~~-----~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~- 142 (503)
T 4fuq_A 71 LATVRAGGVYLPLNTAYTLH-----ELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGR-GSL-TDAAAG- 142 (503)
T ss_dssp HHHHHTTCEEEECCTTCCHH-----HHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTTSC-SHH-HHHHHT-
T ss_pred HHHHHcCcEEEecCCCCCHH-----HHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCCcc-ccc-chhhhc-
Confidence 99999999999999999976 999999999999999998765544332111 1111110000 000 000001
Q ss_pred CCCCCCCCCCCCCCcEEEEecCCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCCeEEEccCCcchhhhHHHHHHHHhcC
Q psy14338 242 PKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFKRETGLWHSVLTSVLNG 321 (1761)
Q Consensus 242 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~i~~~L~~G 321 (1761)
...........++|+|||+|||||||+||||+++|+++.+.+.+....++++++|++++++|++|+++++..++.+++.|
T Consensus 143 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g 222 (503)
T 4fuq_A 143 ASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFAR 222 (503)
T ss_dssp SCSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTT
T ss_pred CCCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhC
Confidence 11112233567899999999999999999999999999999999999999999999999999999999765578899999
Q ss_pred cEEEEeCCccccCCHHHHHHHHHhcCceEEEecCHHHHHHhhcCCCCCCCCCCceeEEEecCCCccCCHHHHHHHHHHhh
Q psy14338 322 MHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGANPWSLSSCDQFLSVFQ 401 (1761)
Q Consensus 322 ~~lvi~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~~ll~~~~~~~~~l~~Lr~v~~gg~Ge~l~~~~~~~~~~~~~ 401 (1761)
+++++.+ .+++..+++.++ ++|+++.+| +++..++.........+++||.+++| |+++++++.++|.+.+
T Consensus 223 ~~~~~~~----~~~~~~~~~~i~--~~t~~~~~P-~~~~~l~~~~~~~~~~~~~lr~~~~g--g~~l~~~~~~~~~~~~- 292 (503)
T 4fuq_A 223 GSMIFLP----KFDPDKILDLMA--RATVLMGVP-TFYTRLLQSPRLTKETTGHMRLFISG--SAPLLADTHREWSAKT- 292 (503)
T ss_dssp CEEEECS----SCCHHHHHHHHT--TCCEEEECH-HHHHHHHTCTTCSTTTTTTCCEEEEC--SSCCCHHHHHHHHHHH-
T ss_pred CEEEEcC----CCCHHHHHHHHh--hcCEEEEHH-HHHHHHHhCCCccccchhhcEEEEEC--CCCCCHHHHHHHHHHh-
Confidence 9999998 789999999998 899999996 58888888776667778999999999 9999999999999988
Q ss_pred hCCCCCCccccccccccccceEeecCCCCCcccCCCccccccCcccceeeecCCCccCcccccccCCCCCCcEEEEEe-C
Q psy14338 402 SKGLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQVMPGCIMTVVK-M 480 (1761)
Q Consensus 402 ~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~I~d-~ 480 (1761)
|.+ ++|.||+||+++.++.... .....+++|+|++|++++|+| +
T Consensus 293 --~~~---~~~~YG~TE~~~~~~~~~~------------------------------~~~~~~~~G~p~~~~~~~i~d~~ 337 (503)
T 4fuq_A 293 --GHA---VLERYGMTETNMNTSNPYD------------------------------GDRVPGAVGPALPGVSARVTDPE 337 (503)
T ss_dssp --SCC---EEECCEETTTEECBCCCSS------------------------------SCCCTTEEEEBCTTCEEEEECTT
T ss_pred --CCC---ccceEcccccCcccccCCC------------------------------CCCcCCccccCCCCeEEEEEECC
Confidence 443 9999999999866442211 123457899999999999999 5
Q ss_pred CCCcccCCCCCceEEEEecCCccccccCCCccccccccccccccCCCccCCCceEeecceEEEeCCCeEEEEeccCCeEE
Q psy14338 481 DSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGFLGPGGLVFVCGSRDGLMT 560 (1761)
Q Consensus 481 ~~~~~~~p~G~~GEL~i~G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvk 560 (1761)
+++ ++|.|++|||+|+|+++++||||+|++|+++|. .+|||||||+|++++||+|+|+||+|||||
T Consensus 338 ~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~------------~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik 403 (503)
T 4fuq_A 338 TGK--ELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFR------------DDGFFITGDLGKIDERGYVHILGRGKDLVI 403 (503)
T ss_dssp TCC--BCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBC------------TTSCEEEEEEEEECTTCEEEECCSSTTCEE
T ss_pred CCC--CCcCCCceEEEEECCchhhhhcCChhhhHhhhC------------CCCCeEcceeEEEcCCCcEEEEecCCCEEE
Confidence 555 699999999999999999999999999999995 378999999999999999999999999999
Q ss_pred ECCcccChHHHHHHHHhcCCccccccceEEEEEEec-CCCceEEEEEEeCCC--CCHHHHHHHHHHHHHHhhhcceeeee
Q psy14338 561 VTGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIRV-LRDERICVIAEQRPD--CSEEESFQWMSRVLQAVDSIHQVGLY 637 (1761)
Q Consensus 561 i~G~rIe~~eIE~~l~~~~~v~~~~~~~a~v~~~~~-~~~~~l~a~v~~~~~--~~~~~l~~~l~~~Lp~y~~P~~i~~~ 637 (1761)
++|+||+|+|||++|.++++| .+|+|++.++ ..++.++++++..++ .+.++++++|+++||.||+|..+
T Consensus 404 ~~G~~v~p~eIE~~l~~~p~V-----~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i--- 475 (503)
T 4fuq_A 404 TGGFNVYPKEIESEIDAMPGV-----VESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKMPKKV--- 475 (503)
T ss_dssp ETTEEECHHHHHHHHHTSTTE-----EEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHBTTBCGGGCCSEE---
T ss_pred ECCEEECHHHHHHHHHhCCCe-----eEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHHHhhcccCCCCCEE---
Confidence 999999999999999998888 7999999985 467889999998654 67889999999999999999986
Q ss_pred EEEEeCCCCccCCCCCcccHHHHHHHHHc
Q psy14338 638 CLALVPPNYLPKTPLGGIHLSECKRRFLE 666 (1761)
Q Consensus 638 ~v~~v~~~~lP~t~~GKidR~~L~~~~~~ 666 (1761)
+.+++||+|+|||+||++|++.+.+
T Consensus 476 ----~~v~~lP~t~~GKi~R~~L~~~~~~ 500 (503)
T 4fuq_A 476 ----IFVDDLPRNTMGKVQKNVLRETYKD 500 (503)
T ss_dssp ----EEESCCCBCTTSCBCHHHHHHHTTT
T ss_pred ----EEECCCCCCcccceeHHHHHHHHHH
Confidence 4459999999999999999998753
No 6
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=6e-75 Score=765.05 Aligned_cols=493 Identities=16% Similarity=0.185 Sum_probs=412.6
Q ss_pred chhHHHHHHHHhhhcCCCcEEEEECCCCceeEEEeHHHHHHHHHHHHHHhhcCCCCccccCCCCCCCEEEEEccCCCchh
Q psy14338 80 PRNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPIN 159 (1761)
Q Consensus 80 ~~~l~~~~~~~a~~~pd~~Av~~~d~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~~~~~~Gv~~g~~V~l~~~~s~~~~ 159 (1761)
..+++++|+++++ ||++|+++++ +++||+||+++++++|++|+ +.|+++|++|+|+++|| ++
T Consensus 26 ~~~l~~~~~~~a~--pd~~Av~~~~------~~lTY~eL~~~a~~lA~~L~--------~~Gv~~gd~V~l~~~~s--~~ 87 (617)
T 3rg2_A 26 DLPLTDILTRHAA--SDSIAVIDGE------RQLSYRELNQAADNLACSLR--------RQGIKPGETALVQLGNV--AE 87 (617)
T ss_dssp CCCTTHHHHTTTT--CCSEEEEETT------EEEEHHHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCSS--HH
T ss_pred cCCHHHHHHHhhC--CCCeEEecCC------ceEeHHHHHHHHHHHHHHHH--------HcCCCCCCEEEEECCCc--HH
Confidence 3579999999988 9999999766 79999999999999999999 88999999999999999 99
Q ss_pred HHHHHHHHHHhCCeEEecCCCCCcCccchhHHHHHHhcCCCcEEEEcccccccCccc---------ccccceec-cCCCc
Q psy14338 160 FLCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKT---------AAGEVVAF-KGWPK 229 (1761)
Q Consensus 160 ~vva~lAvlkaG~~~vpldp~~p~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~---------~~~~~~~~-~~~~~ 229 (1761)
+++++|||+|+|+++||+||.+|.+ |+.+++++++++++|++.......... .....+.. .....
T Consensus 88 ~vva~lA~l~aG~~~vpl~~~~~~~-----~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (617)
T 3rg2_A 88 LYITFFALLKLGVAPVLALFSHQRS-----ELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE 162 (617)
T ss_dssp HHHHHHHHHHHTCEEEEECTTCCHH-----HHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST
T ss_pred HHHHHHHHHhcCeEEccCCccccHH-----HHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc
Confidence 9999999999999999999999976 999999999999999987653111000 00000000 00000
Q ss_pred ceeEEeccccCCCCCCCCCCCCCCCCcEEEEecCCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCCeEEEccCCcchhh
Q psy14338 230 LTWFVTEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFKRETG 309 (1761)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 309 (1761)
..+ .+... .+..........++++|||+|||||||+||||+++|+++++.+.+....++++++|++++++|++|.++
T Consensus 163 ~~~--~~~~~-~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 239 (617)
T 3rg2_A 163 HNL--QDAIN-HPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYA 239 (617)
T ss_dssp TBH--HHHHH-SCCSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHH
T ss_pred cch--hhhhc-ccccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhh
Confidence 000 00001 111112233457899999999999999999999999999999999999999999999999999887766
Q ss_pred hHH-HHHHHHhcCcEEEEeCCccccCCHHHHHHHHHhcCceEEEecCHHHHHHhhcCCC--CCCCCCCceeEEEecCCCc
Q psy14338 310 LWH-SVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKD--HKDISLSSLRLLLVGDGAN 386 (1761)
Q Consensus 310 ~~~-~i~~~L~~G~~lvi~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~~ll~~~~--~~~~~l~~Lr~v~~gg~Ge 386 (1761)
+.. .+|.+|+.|+++++.+ ..++..+++.|+++++|++.++|+ ++..++.... ....++++||.+++| ||
T Consensus 240 ~~~~~~~~~l~~G~~~v~~~----~~~~~~~~~~i~~~~~t~~~~~P~-~~~~l~~~~~~~~~~~~l~~lr~i~~g--Ge 312 (617)
T 3rg2_A 240 MSSPGSLGVFLAGGTVVLAA----DPSATLCFPLIEKHQVNVTALVPP-AVSLWLQALIEGESRAQLASLKLLQVG--GA 312 (617)
T ss_dssp HHSSHHHHHHHHTCEEEECS----SCCHHHHHHHHHHTTCCEEEECHH-HHHHHHHHHHTTCCTTTTTTCCEEEEE--SS
T ss_pred hhHHHHHHHHHcCCEEEEeC----CCCHHHHHHHHHHhCCcEEEcchH-HHHHHHHhhhcccccccCCCccEEEEc--CC
Confidence 542 4899999999999988 578999999999999999999964 7666654322 223368999999999 99
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCccccccccccccceEeecCCCCCcccCCCccccccCcccceeeecCCCccCccccccc
Q psy14338 387 PWSLSSCDQFLSVFQSKGLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDC 466 (1761)
Q Consensus 387 ~l~~~~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 466 (1761)
++++++.++|.+.+ |. +++|.||+||+++.++..... ......++
T Consensus 313 ~l~~~~~~~~~~~~---~~---~~~~~YG~tE~~~~~~~~~~~-----------------------------~~~~~~~~ 357 (617)
T 3rg2_A 313 RLSATLAARIPAEI---GC---QLQQVFGMAEGLVNYTRLDDS-----------------------------AEKIIHTQ 357 (617)
T ss_dssp CCCHHHHHHHHHHT---CS---EEEEEEEETTEEEEECCTTSC-----------------------------HHHHHHCC
T ss_pred cCCHHHHHHHHHHh---CC---cEEEEeccCcceeecccCCCc-----------------------------ccccccCC
Confidence 99999999999987 44 399999999998655432210 11235689
Q ss_pred CCCC-CCcEEEEEeCCCCcccCCCCCceEEEEecCCccccccCCCccccccccccccccCCCccCCCceEeecceEEEeC
Q psy14338 467 GQVM-PGCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGFLGP 545 (1761)
Q Consensus 467 G~p~-~~~~~~I~d~~~~~~~~p~G~~GEL~i~G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~~~~ 545 (1761)
|+|+ ++++++|+|++++ ++|.|++|||||+|+++++||||+|++|+++|. .++||||||+|++++
T Consensus 358 G~p~~~~~~~~i~d~~~~--~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~------------~~~~yrTGDl~~~~~ 423 (617)
T 3rg2_A 358 GYPMCPDDEVWVADAEGN--PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFD------------ANGFYCSGDLISIDP 423 (617)
T ss_dssp CEESCTTCEEEEECTTSC--BCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBC------------TTSCEEEEEEEEECT
T ss_pred CccCCCCceEEEECCCCC--CCCCCCceEEEecCccccchhcCChhhhhhccC------------CCCceecCceEEEcC
Confidence 9998 7889999999987 699999999999999999999999999999995 378999999999999
Q ss_pred CCeEEEEeccCCeEEECCcccChHHHHHHHHhcCCccccccceEEEEEEecC-CCceEEEEEEeCCCCCHHHHHHHHHH-
Q psy14338 546 GGLVFVCGSRDGLMTVTGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIRVL-RDERICVIAEQRPDCSEEESFQWMSR- 623 (1761)
Q Consensus 546 dG~l~~~GR~d~qvki~G~rIe~~eIE~~l~~~~~v~~~~~~~a~v~~~~~~-~~~~l~a~v~~~~~~~~~~l~~~l~~- 623 (1761)
||+|+|+||+|||||++|+||+|+|||++|.+++.| .+|+|++.++. .++.+++|++..+..+.+++++++++
T Consensus 424 dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V-----~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~l~~~l~~~ 498 (617)
T 3rg2_A 424 EGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAV-----IYAALVSMEDELMGEKSCAYLVVKEPLRAVQVRRFLREQ 498 (617)
T ss_dssp TSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTE-----EEEEEEEEEETTTEEEEEEEEEESSCCCHHHHHHHHHTT
T ss_pred CceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCe-----eEEEEEeccCcccCeeEEEEEEeCCCCCHHHHHHHHHhC
Confidence 999999999999999999999999999999998888 69999998854 67889999999888899999999998
Q ss_pred HHHHhhhcceeeeeEEEEeCCCCccCCCCCcccHHHHHHHHHc
Q psy14338 624 VLQAVDSIHQVGLYCLALVPPNYLPKTPLGGIHLSECKRRFLE 666 (1761)
Q Consensus 624 ~Lp~y~~P~~i~~~~v~~v~~~~lP~t~~GKidR~~L~~~~~~ 666 (1761)
.||.||+|+.+ +.+++||+|+||||||++|++.+..
T Consensus 499 ~lp~~~vP~~~-------~~v~~lP~t~~GKidR~~L~~~~~~ 534 (617)
T 3rg2_A 499 GIAEFKLPDRV-------ECVDSLPLTAVGKVDKKQLRQWLAS 534 (617)
T ss_dssp TCCGGGSCSEE-------EECSCCCBCTTSSBCHHHHHHHHHH
T ss_pred CCccccCCcEE-------EEecccCCCCCCCCcHHHHHHHHhc
Confidence 69999999986 6679999999999999999998754
No 7
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1.3e-74 Score=745.87 Aligned_cols=494 Identities=16% Similarity=0.263 Sum_probs=415.0
Q ss_pred cchhHHHHHHHHhhhcCCCcEEEEECCCCceeEEEeHHHHHHHHHHHHHHhhcCCCCccccCCCCCCCEEEEEccCCCch
Q psy14338 79 LPRNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPI 158 (1761)
Q Consensus 79 ~~~~l~~~~~~~a~~~pd~~Av~~~d~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~~~~~~Gv~~g~~V~l~~~~s~~~ 158 (1761)
...++.++|+++++++|+++|+++.+.+ +++||+||+++++++|+.|+ +.|+++||+|+|+++|| +
T Consensus 14 ~~~~l~~~l~~~a~~~p~~~A~~~~~~~----~~~Ty~eL~~~~~~lA~~L~--------~~Gv~~gd~V~i~~~~~--~ 79 (517)
T 3r44_A 14 KMKNIGWMLRQRATVSPRLQAYVEPSTD----VRMTYAQMNALANRCADVLT--------ALGIAKGDRVALLMPNS--V 79 (517)
T ss_dssp GGGCHHHHHHHHHHHSTTSEEEEEGGGT----EEEEHHHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCSS--H
T ss_pred cccCHHHHHHHHHHhCCCCeEEEeCCcC----ceeeHHHHHHHHHHHHHHHH--------HcCCCCcCEEEEEcCCC--H
Confidence 3578999999999999999999986422 58999999999999999999 89999999999999999 9
Q ss_pred hHHHHHHHHHHhCCeEEecCCCCCcCccchhHHHHHHhcCCCcEEEEcccccccCcccccccceeccCCCcceeEE----
Q psy14338 159 NFLCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKLTWFV---- 234 (1761)
Q Consensus 159 ~~vva~lAvlkaG~~~vpldp~~p~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 234 (1761)
++++++|||+|+|+++|||||.+|.+ |+.+++++++++++|++......+......... ... ...+..
T Consensus 80 ~~~~~~lA~~~~G~~~vpl~~~~~~~-----~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~ 151 (517)
T 3r44_A 80 EFCCLFYGAAKLGAVAVPINTRLAAP-----EVSFILSDSGSKVVIYGAPSAPVIDAIRAQADP-PGT--VTDWIGADSL 151 (517)
T ss_dssp HHHHHHHHHHHHTCEEEECCTTSCHH-----HHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSC-CTT--CCEEEEHHHH
T ss_pred HHHHHHHHHHHhCcEEEecCcccCHH-----HHHHHHHhcCceEEEECCchHHHHHHHHhccCC-ccE--EEEccCcccH
Confidence 99999999999999999999999976 999999999999999998765433221110000 000 000000
Q ss_pred eccccCCCCCCCCCCCCCCCCcEEEEecCCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCCeEEEccCCcchhhhHHHH
Q psy14338 235 TEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFKRETGLWHSV 314 (1761)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~i 314 (1761)
.+..... ....+.....++|+|||+|||||||+||||+++|+++.+.+.+....++++++|++++++|++|++++.. +
T Consensus 152 ~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~ 229 (517)
T 3r44_A 152 AERLRSA-AADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTT-V 229 (517)
T ss_dssp HHHHHHC-CCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHH-H
T ss_pred HHHhhcc-CcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHH-H
Confidence 0111111 1122334567899999999999999999999999999999999999999999999999999999999986 6
Q ss_pred HHHHhcCcEEEEeCCccccCCHHHHHHHHHhcCceEEEecCHHHHHHhhcCCCCCCCCCCceeEEEecCCCccCCHHHHH
Q psy14338 315 LTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGANPWSLSSCD 394 (1761)
Q Consensus 315 ~~~L~~G~~lvi~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~~ll~~~~~~~~~l~~Lr~v~~gg~Ge~l~~~~~~ 394 (1761)
+.+++.|+++++.+ .+++..+++.|+++++|++.++| +++..++..+.....++++||.+++| ||++++++.+
T Consensus 230 ~~~~~~G~~~v~~~----~~~~~~~~~~i~~~~~t~~~~~P-~~~~~l~~~~~~~~~~~~~lr~i~~g--Ge~l~~~~~~ 302 (517)
T 3r44_A 230 IFSAMRGVTLISMP----QFDATKVWSLIVEERVCIGGAVP-AILNFMRQVPEFAELDAPDFRYFITG--GAPMPEALIK 302 (517)
T ss_dssp HHHHHHTCEEEECS----SCCHHHHHHHHHHTTCCEEEECH-HHHHHHHHSHHHHHCCCTTCCEEEEC--SSCCCHHHHH
T ss_pred HHHHhcCeEEEEeC----CCCHHHHHHHHHHhCCeEEEeHH-HHHHHHHhCcccccCCCCcccEEEEC--CCCCCHHHHH
Confidence 66666999999998 68999999999999999999996 58888877665556678999999999 9999999999
Q ss_pred HHHHHhhhCCCCCCccccccccccccceEeecCCCCCcccCCCccccccCcccceeeecCCCccCcccccccCCCCCCcE
Q psy14338 395 QFLSVFQSKGLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQVMPGCI 474 (1761)
Q Consensus 395 ~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~ 474 (1761)
+|.+. |+ .++|.||+||++..++..... ......+++|+|+++++
T Consensus 303 ~~~~~----~~---~~~~~YG~TE~~~~~~~~~~~----------------------------~~~~~~~~~G~~~~~~~ 347 (517)
T 3r44_A 303 IYAAK----NI---EVVQGYALTESCGGGTLLLSE----------------------------DALRKAGSAGRATMFTD 347 (517)
T ss_dssp HHHHT----TC---EEEEEEECGGGTTCEEEECGG----------------------------GTTTTTTCCBEECTTEE
T ss_pred HHHhc----CC---cEEEeecccccccceeecCCc----------------------------cccccCCCCCcCCCCeE
Confidence 99875 44 499999999998766543311 00234678999999999
Q ss_pred EEEEeCCCCcccCCCCCceEEEEecCCccccccCCCccccccccccccccCCCccCCCceEeecceEEEeCCCeEEEEec
Q psy14338 475 MTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGFLGPGGLVFVCGS 554 (1761)
Q Consensus 475 ~~I~d~~~~~~~~p~G~~GEL~i~G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~~~~dG~l~~~GR 554 (1761)
++|+|+++. ++|.| .|||+|+|+++++||||+|++|+++|. +|||||||+|++++||+|+|+||
T Consensus 348 ~~i~d~~~~--~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~-------------~g~~~TGDl~~~~~dG~l~~~GR 411 (517)
T 3r44_A 348 VAVRGDDGV--IREHG-EGEVVIKSDILLKEYWNRPEATRDAFD-------------NGWFRTGDIGEIDDEGYLYIKDR 411 (517)
T ss_dssp EEEECTTSC--EESSE-EEEEEEEETTSCSEETTCHHHHHHTEE-------------TTEEEEEEEEEECTTSCEEEEEC
T ss_pred EEEECCCCC--CCCCC-CeEEEEeCcchhhhhCCChhhhHhhhc-------------CCCEecceeEEEcCCeeEEEecC
Confidence 999999986 58888 899999999999999999999999994 79999999999999999999999
Q ss_pred cCCeEEECCcccChHHHHHHHHhcCCccccccceEEEEEEecC-CCceEEEEEEeC-CCCCHHHHHHHHHHHHHHhhhcc
Q psy14338 555 RDGLMTVTGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIRVL-RDERICVIAEQR-PDCSEEESFQWMSRVLQAVDSIH 632 (1761)
Q Consensus 555 ~d~qvki~G~rIe~~eIE~~l~~~~~v~~~~~~~a~v~~~~~~-~~~~l~a~v~~~-~~~~~~~l~~~l~~~Lp~y~~P~ 632 (1761)
+|||||++|+||+|.|||++|.++++| .+|+|++.++. .++.+++++... ...+.++++++|+++||.||+|.
T Consensus 412 ~dd~ik~~G~~v~p~eIE~~l~~~p~V-----~~~~Vv~~~~~~~g~~~~a~v~~~~~~~~~~~l~~~l~~~L~~~~~P~ 486 (517)
T 3r44_A 412 LKDMIISGGENVYPAEIESVIIGVPGV-----SEVAVIGLPDEKWGEIAAAIVVADQNEVSEQQIVEYCGTRLARYKLPK 486 (517)
T ss_dssp GGGCEEETTEEECHHHHHHHHTTSTTE-----EEEEEEEEEETTTEEEEEEEEEECTTTCCHHHHHHHHHHHSCGGGSCS
T ss_pred CcCEEEECCEEECHHHHHHHHHhCCCE-----eEEEEEeccccccCceEEEEEECCCCCCCHHHHHHHHHHhCCCCCCCC
Confidence 999999999999999999999998888 79999999854 567777777543 34788999999999999999999
Q ss_pred eeeeeEEEEeCCCCccCCCCCcccHHHHHHHHHc
Q psy14338 633 QVGLYCLALVPPNYLPKTPLGGIHLSECKRRFLE 666 (1761)
Q Consensus 633 ~i~~~~v~~v~~~~lP~t~~GKidR~~L~~~~~~ 666 (1761)
.+ +.+++||+|+||||||++|++.+.+
T Consensus 487 ~i-------~~v~~lP~t~~GKi~R~~L~~~~~~ 513 (517)
T 3r44_A 487 KV-------IFAEAIPRNPTGKILKTVLREQYSA 513 (517)
T ss_dssp EE-------EECSCCCBCTTCCBCHHHHHHHHGG
T ss_pred EE-------EEECCCCCCCCcCccHHHHHHHHHh
Confidence 86 5569999999999999999999864
No 8
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=9.6e-74 Score=745.68 Aligned_cols=500 Identities=16% Similarity=0.211 Sum_probs=398.5
Q ss_pred hhHHHHHHHHhhhcCCCcEEEEECCCCceeEEEeHHHHHHHHHHHHHHhhcCCCCccccCCCCCCCEEEEEccCCCchhH
Q psy14338 81 RNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINF 160 (1761)
Q Consensus 81 ~~l~~~~~~~a~~~pd~~Av~~~d~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~~~~~~Gv~~g~~V~l~~~~s~~~~~ 160 (1761)
...+++|+++|+++||++|+++.+.+|.. +++||+||+++++++|++|+ +.|+++||+|+|+++|+ +++
T Consensus 56 n~~~~~l~~~a~~~pd~~Al~~~~~~g~~-~~~Ty~eL~~~~~~~A~~L~--------~~Gv~~Gd~V~l~~~~~--~e~ 124 (580)
T 3etc_A 56 NFAYDVVDVYARDSPEKLAMIWCDDYGNE-KIFTFKDLKYYSDKAANFFV--------KHGIGKGDYVMLTLKSR--YDF 124 (580)
T ss_dssp CHHHHTHHHHHHHCTTCEEEEEEESSSCE-EEEEHHHHHHHHHHHHHHHH--------HTTCCTTCEEEEECTTC--THH
T ss_pred hHHHHHHHHHHhhCCCCEEEEEEcCCCCE-eEEeHHHHHHHHHHHHHHHH--------HcCCCCCCEEEEEcCCC--HHH
Confidence 45679999999999999999987654433 78999999999999999999 89999999999999999 999
Q ss_pred HHHHHHHHHhCCeEEecCCCCCcCccchhHHHHHHhcCCCcEEEEccccc--ccCccccc------ccceeccCCCccee
Q psy14338 161 LCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACL--KGLPKTAA------GEVVAFKGWPKLTW 232 (1761)
Q Consensus 161 vva~lAvlkaG~~~vpldp~~p~~~~~~~rl~~il~~~~~~~vl~~~~~~--~~~~~~~~------~~~~~~~~~~~~~~ 232 (1761)
++++|||+|+|+++||++|.++.+ ++.+++++++++++|++.... ..+..... ...+.........+
T Consensus 125 ~~~~lA~~~~Gav~vpl~~~~~~~-----~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (580)
T 3etc_A 125 WYCMLGLHKLGAIAVPATHMLKTR-----DIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGW 199 (580)
T ss_dssp HHHHHHHHHHTCEEEECCTTCCHH-----HHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCCTTC
T ss_pred HHHHHHHHhCCEEEEeCCccCCHH-----HHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCcccccc
Confidence 999999999999999999999976 899999999999999987643 22211100 01111111100111
Q ss_pred EE-eccccCCCCCCCCC---CCCCCCCcEEEEecCCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCCeEEEccCCcchh
Q psy14338 233 FV-TEHLAKTPKDWAPQ---PRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFKRET 308 (1761)
Q Consensus 233 ~~-~~~~~~~~~~~~~~---~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 308 (1761)
.. .+............ ....++|+|||+|||||||+||||+++|+++++.+......+++.+++++++.+|++|+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (580)
T 3etc_A 200 IDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGK 279 (580)
T ss_dssp EEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTH
T ss_pred ccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHH
Confidence 11 11111111111111 246789999999999999999999999999998888777778999999999999999999
Q ss_pred hhHHHHHHHHhcCcEEEEeCCccccCCHHHHHHHHHhcCceEEEecCHHHHHHhhcCCCCCCCCCCceeEEEecCCCccC
Q psy14338 309 GLWHSVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGANPW 388 (1761)
Q Consensus 309 ~~~~~i~~~L~~G~~lvi~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~~ll~~~~~~~~~l~~Lr~v~~gg~Ge~l 388 (1761)
+++..++.+++.|+++++.+.. .+++..+++.|+++++|+++++| +++..++.. .....++++||.+++| ||++
T Consensus 280 ~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~~i~~~~vt~~~~~P-~~~~~l~~~-~~~~~~l~~lr~i~~g--Ge~l 353 (580)
T 3etc_A 280 CVWGKLYGQWIAGCAVFVYDYD--RFEAKNMLEKASKYGVTTFCAPP-TIYRFLIKE-DLSHYNFSTLKYAVVA--GEPL 353 (580)
T ss_dssp HHHHTTHHHHHTTCEEEEEECS--SCCHHHHHHHHHHHTCCEEEECH-HHHHHHHTS-CC---CCTTCCEEEEC--SSCC
T ss_pred HHHHHHHHHHhCCcEEEEecCC--CCCHHHHHHHHHHHCCeEEEccH-HHHHHHHhc-ccccCCCccceEEEEc--cCCC
Confidence 9986688999999999998532 78999999999999999999985 577777664 4445678999999999 9999
Q ss_pred CHHHHHHHHHHhhhCCCCCCccccccccccccceEeecCCCCCcccCCCccccccCcccceeeecCCCccCcccccccCC
Q psy14338 389 SLSSCDQFLSVFQSKGLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQ 468 (1761)
Q Consensus 389 ~~~~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~ 468 (1761)
++++.++|.+.+ |++ ++|.||+||+++.++..+.. ..+.+++|+
T Consensus 354 ~~~~~~~~~~~~---g~~---i~~~YG~TE~~~~~~~~~~~------------------------------~~~~~~~G~ 397 (580)
T 3etc_A 354 NPEVFNRFLEFT---GIK---LMEGFGQTETVVTIATFPWM------------------------------EPKPGSIGK 397 (580)
T ss_dssp CHHHHHHHHHHH---SCC---CEEEECCTTSSCCEECCTTS------------------------------CCCTTCCBE
T ss_pred CHHHHHHHHHHh---CCe---EecccccccccceeecCCCC------------------------------CCCCCcccc
Confidence 999999999988 554 99999999998766544321 124678999
Q ss_pred CCCCcEEEEEeCCCCcccCCCCCceEEEEec-----CCccccccCCCccccccccccccccCCCccCCCceEeecceEEE
Q psy14338 469 VMPGCIMTVVKMDSPSYLCKTDEVGEICVAS-----TGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGFL 543 (1761)
Q Consensus 469 p~~~~~~~I~d~~~~~~~~p~G~~GEL~i~G-----~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~~ 543 (1761)
|++|++++|+|++++ +||.|+.|||+|+| +++++||+|+|++|+++|. +|||||||+|++
T Consensus 398 p~~~~~v~ivd~~g~--~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~-------------~gwy~TGDlg~~ 462 (580)
T 3etc_A 398 PTPGYKIELMDRDGR--LCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWH-------------DGYYHTGDMAWM 462 (580)
T ss_dssp ECTTCEEEEECTTSC--BCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEE-------------TTEEEEEEEEEE
T ss_pred CCCCCEEEEECCCCC--CCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcC-------------CCEEecCcEEEE
Confidence 999999999999987 69999999999997 8899999999999999995 789999999999
Q ss_pred eCCCeEEEEeccCCeEEECCcccChHHHHHHHHhcCCccccccceEEEEEEecC-CCceEEEEEEeCCCCC-----HHHH
Q psy14338 544 GPGGLVFVCGSRDGLMTVTGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIRVL-RDERICVIAEQRPDCS-----EEES 617 (1761)
Q Consensus 544 ~~dG~l~~~GR~d~qvki~G~rIe~~eIE~~l~~~~~v~~~~~~~a~v~~~~~~-~~~~l~a~v~~~~~~~-----~~~l 617 (1761)
|+||+|+|+||+|||||++|+||+|.|||++|.+++.| .+|+|++.++. .++.++|+++..++.. .+++
T Consensus 463 d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V-----~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l 537 (580)
T 3etc_A 463 DEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAV-----LECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNEL 537 (580)
T ss_dssp CTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTE-----EEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHH
T ss_pred CCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCe-----eeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999998888 79999999864 6788999999876632 3689
Q ss_pred HHHHHHHHHHhhhcceeeeeEEEEeCCCCccCCCCCcccHHHHHHHHH
Q psy14338 618 FQWMSRVLQAVDSIHQVGLYCLALVPPNYLPKTPLGGIHLSECKRRFL 665 (1761)
Q Consensus 618 ~~~l~~~Lp~y~~P~~i~~~~v~~v~~~~lP~t~~GKidR~~L~~~~~ 665 (1761)
+++|+++||.||+|..+ +.+++||+|+||||||++|++++.
T Consensus 538 ~~~l~~~l~~~~~P~~i-------~~v~~lP~t~sGKi~R~~Lr~~~~ 578 (580)
T 3etc_A 538 QDHVKNVTAPYKYPRII-------EFVPELPKTISGKIRRVEIRDKDQ 578 (580)
T ss_dssp HHHHHHHSCGGGCCSEE-------EEECC-------------------
T ss_pred HHHHHhhCCCccCCeEE-------EEeCCCCCCCCcCCcHHHHHhHhh
Confidence 99999999999999986 445999999999999999998765
No 9
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=4e-74 Score=745.21 Aligned_cols=492 Identities=16% Similarity=0.199 Sum_probs=415.0
Q ss_pred hhHHHHHHHHhhhcCCCcEEEEECCCCceeEEEeHHHHHHHHHHHHHHhhcCCCCccccCCCCCCCEEEEEccCCCchhH
Q psy14338 81 RNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINF 160 (1761)
Q Consensus 81 ~~l~~~~~~~a~~~pd~~Av~~~d~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~~~~~~Gv~~g~~V~l~~~~s~~~~~ 160 (1761)
.+++++|+++++++||++|+++.+ +++||+||+++++++|+.|+ +.|+++||+|+|+++|| +++
T Consensus 25 ~tl~~~l~~~a~~~p~~~A~~~~~------~~~Ty~eL~~~~~~lA~~L~--------~~Gv~~gd~V~i~~~~~--~~~ 88 (539)
T 1mdb_A 25 ETFGDLLRDRAAKYGDRIAITCGN------THWSYRELDTRADRLAAGFQ--------KLGIQQKDRVVVQLPNI--KEF 88 (539)
T ss_dssp CCHHHHHHHHHHHHTTSEEEEETT------EEEEHHHHHHHHHHHHHHHH--------HHTCCTTCEEEECCCSS--HHH
T ss_pred CCHHHHHHHHHHHCCCCEEEEeCC------CcccHHHHHHHHHHHHHHHH--------HcCCCCCCEEEEEcCCc--HHH
Confidence 579999999999999999999755 69999999999999999999 88999999999999999 999
Q ss_pred HHHHHHHHHhCCeEEecCCCCCcCccchhHHHHHHhcCCCcEEEEcccccc-----cCccc----cc-ccceeccCCCcc
Q psy14338 161 LCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLK-----GLPKT----AA-GEVVAFKGWPKL 230 (1761)
Q Consensus 161 vva~lAvlkaG~~~vpldp~~p~~~~~~~rl~~il~~~~~~~vl~~~~~~~-----~~~~~----~~-~~~~~~~~~~~~ 230 (1761)
++++|||+|+|+++||++|.++.+ |+.+++++++++++|+++.... .+... .. ..++......
T Consensus 89 ~~~~lA~~~~Ga~~vpl~~~~~~~-----~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 161 (539)
T 1mdb_A 89 FEVIFALFRLGALPVFALPSHRSS-----EITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE-- 161 (539)
T ss_dssp HHHHHHHHHHTCEEEECCTTCCHH-----HHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT--
T ss_pred HHHHHHHHHcCeEEecCCCCCCHH-----HHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc--
Confidence 999999999999999999999976 9999999999999999876321 00000 00 0111111100
Q ss_pred eeEEeccccCCCCCCCCCCCCCCCCcEEEEecCCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCCeEEEccCCcchhhh
Q psy14338 231 TWFVTEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFKRETGL 310 (1761)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 310 (1761)
.+ .+... ............++|+|||+|||||||+||||+++|+++++.+.+....++++++|++++++|++|++++
T Consensus 162 ~~--~~~~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 238 (539)
T 1mdb_A 162 EF--LPLED-LHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPL 238 (539)
T ss_dssp TS--EEGGG-CCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHH
T ss_pred ch--hhhhh-ccccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchh
Confidence 01 01111 1111112234678999999999999999999999999999999998889999999999999999999998
Q ss_pred HH-HHHHHHhcCcEEEEeCCccccCCHHHHHHHHHhcCceEEEecCHHHHHHhhcCCCCCCCCCCceeEEEecCCCccCC
Q psy14338 311 WH-SVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGANPWS 389 (1761)
Q Consensus 311 ~~-~i~~~L~~G~~lvi~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~~ll~~~~~~~~~l~~Lr~v~~gg~Ge~l~ 389 (1761)
.. .++.+|+.|+++++.+ .+++..+++.|+++++|++.++| +++..++........++++||.+++| |++++
T Consensus 239 ~~~~~~~~l~~G~~~v~~~----~~~~~~~~~~i~~~~~t~~~~~P-~~~~~l~~~~~~~~~~l~~lr~~~~g--G~~l~ 311 (539)
T 1mdb_A 239 SSPGVLGVLYAGGRVVLSP----SPSPDDAFPLIEREKVTITALVP-PLAMVWMDAASSRRDDLSSLQVLQVG--GAKFS 311 (539)
T ss_dssp HSSHHHHHHHTTCEEEECS----SSSHHHHHHHHHHHTCSEEEECH-HHHHHHHHHHHHCCCCCTTCCEEEEE--SSCCC
T ss_pred hHHHHHHHHHhCCEEEECC----CCCHHHHHHHHHHcCCeEEEccH-HHHHHHHhCccccCCCccceeEEEEc--CCCCC
Confidence 73 4899999999999988 67999999999999999999996 47777776544445678999999999 99999
Q ss_pred HHHHHHHHHHhhhCCCCCCccccccccccccceEeecCCCCCcccCCCccccccCcccceeeecCCCccCcccccccCCC
Q psy14338 390 LSSCDQFLSVFQSKGLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQV 469 (1761)
Q Consensus 390 ~~~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p 469 (1761)
+++.++|.+.+ |. .++|.||+||+++.++.... .......++|+|
T Consensus 312 ~~~~~~~~~~~---~~---~~~~~YG~TE~~~~~~~~~~-----------------------------~~~~~~~~~G~p 356 (539)
T 1mdb_A 312 AEAARRVKAVF---GC---TLQQVFGMAEGLVNYTRLDD-----------------------------PEEIIVNTQGKP 356 (539)
T ss_dssp HHHHTTHHHHT---CS---EEEEEEECTTSCEEECCTTS-----------------------------CHHHHHHCCCEE
T ss_pred HHHHHHHHHHh---CC---cEEEEEcCCCCcccccCCCC-----------------------------cHHhcCCCCCcc
Confidence 99999999987 44 39999999997654432110 011245789999
Q ss_pred CCC-cEEEEEeCCCCcccCCCCCceEEEEecCCccccccCCCccccccccccccccCCCccCCCceEeecceEEEeCCCe
Q psy14338 470 MPG-CIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGFLGPGGL 548 (1761)
Q Consensus 470 ~~~-~~~~I~d~~~~~~~~p~G~~GEL~i~G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~~~~dG~ 548 (1761)
+++ .+++|+|++++ ++|.|++|||+|+|+++++||||+|++|+++|. .+|||||||+|++++||+
T Consensus 357 ~~~~~~~~i~d~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~------------~~g~~~TGDlg~~~~dG~ 422 (539)
T 1mdb_A 357 MSPYDESRVWDDHDR--DVKPGETGHLLTRGPYTIRGYYKAEEHNAASFT------------EDGFYRTGDIVRLTRDGY 422 (539)
T ss_dssp SSTTCEEEEECTTSC--BCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBC------------TTSCEEEEEEEEECTTSC
T ss_pred cCCCceEEEECCCCC--CCcCCCcceEEeeCcccchhhcCChhhhhhhcc------------CCCCeecCceEEECCCCc
Confidence 976 48999999987 599999999999999999999999999999995 378999999999999999
Q ss_pred EEEEeccCCeEEECCcccChHHHHHHHHhcCCccccccceEEEEEEecC-CCceEEEEEEeCC-CCCHHHHHHHHHHH-H
Q psy14338 549 VFVCGSRDGLMTVTGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIRVL-RDERICVIAEQRP-DCSEEESFQWMSRV-L 625 (1761)
Q Consensus 549 l~~~GR~d~qvki~G~rIe~~eIE~~l~~~~~v~~~~~~~a~v~~~~~~-~~~~l~a~v~~~~-~~~~~~l~~~l~~~-L 625 (1761)
|+|+||+|||||++|+||+|.|||++|.+++.| .+|+|++.++. .++.++|++++.. ..+.++++++|+++ |
T Consensus 423 l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V-----~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~l~~~l~~~~L 497 (539)
T 1mdb_A 423 IVVEGRAKDQINRGGEKVAAEEVENHLLAHPAV-----HDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRERGL 497 (539)
T ss_dssp EEEEEEGGGCEECSSCEECHHHHHHHHTTSTTE-----EEEEEEEEEETTTEEEEEEEEEESSSCCCHHHHHHHHHHTTC
T ss_pred EEEeccccceEEECCEEECHHHHHHHHHhCCCc-----ceEEEEeccccccCceEEEEEEECCCCCCHHHHHHHHHhCCC
Confidence 999999999999999999999999999998888 79999999864 6788999998764 46789999999998 9
Q ss_pred HHhhhcceeeeeEEEEeCCCCccCCCCCcccHHHHHHHHHc
Q psy14338 626 QAVDSIHQVGLYCLALVPPNYLPKTPLGGIHLSECKRRFLE 666 (1761)
Q Consensus 626 p~y~~P~~i~~~~v~~v~~~~lP~t~~GKidR~~L~~~~~~ 666 (1761)
|.||+|+.+ +.+++||+|+||||||++|++.+.+
T Consensus 498 ~~~~~P~~i-------~~v~~lP~t~~GKi~r~~L~~~~~~ 531 (539)
T 1mdb_A 498 AAYKIPDRV-------EFVESFPQTGVGKVSKKALREAISE 531 (539)
T ss_dssp CGGGSCSEE-------EECSSCCBCTTSCBCHHHHHHHHHH
T ss_pred CcccCCCEE-------EEeccCCCCCCcCEeHHHHHHHHHH
Confidence 999999986 5569999999999999999998753
No 10
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=8.2e-75 Score=754.07 Aligned_cols=510 Identities=16% Similarity=0.200 Sum_probs=384.0
Q ss_pred chhHHHHHHHHhhhcCCCcEEEEECCCC--ceeEEEeHHHHHHHHHHHHHHhhcCCCCccccCCCCCCCEEEEEccCCCc
Q psy14338 80 PRNLEAAIQRYGSATYKAPVATVLDPNG--KLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDP 157 (1761)
Q Consensus 80 ~~~l~~~~~~~a~~~pd~~Av~~~d~~g--~~~~~lTY~eL~~~a~~lA~~L~~~~~~~~~~~Gv~~g~~V~l~~~~s~~ 157 (1761)
..++.++|+++++++||++|+++.+..+ ...+++||+||+++++++|+.|+ +.|+++||+|+|+++||
T Consensus 18 ~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~--------~~Gv~~gd~V~i~~~~~-- 87 (549)
T 3g7s_A 18 KISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGIS--------RKGVRKGEHVGVCIPNS-- 87 (549)
T ss_dssp CCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCSS--
T ss_pred CCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHH--------HcCCCCCCEEEEECCCC--
Confidence 3579999999999999999999887321 11148999999999999999999 88999999999999999
Q ss_pred hhHHHHHHHHHHhCCeEEecCCCCCcCccchhHHHHHHhcCCCcEEEEcccccccCccccc----ccceeccCCCcceeE
Q psy14338 158 INFLCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAA----GEVVAFKGWPKLTWF 233 (1761)
Q Consensus 158 ~~~vva~lAvlkaG~~~vpldp~~p~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 233 (1761)
+++++++|||+|+|+++|||||.+|.+ |+.+++++++++++|+++...+.+..... ..++.... ....+
T Consensus 88 ~~~~~~~lA~~~~G~~~vpl~~~~~~~-----~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~- 160 (549)
T 3g7s_A 88 IDYVMTIYALWRVAATPVPINPMYKSF-----ELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGG-EVNSL- 160 (549)
T ss_dssp HHHHHHHHHHHHTTCEEEECCTTCCHH-----HHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETC-SSSCH-
T ss_pred HHHHHHHHHHHHhCCEEEccCCCCCHH-----HHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCC-CCcCH-
Confidence 999999999999999999999999976 99999999999999999876543322111 11111110 00000
Q ss_pred EeccccCCCCCCCCCCCCCC-CCcEEEEecCCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCCeEEEccCCcchhhhHH
Q psy14338 234 VTEHLAKTPKDWAPQPRLTD-DTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFKRETGLWH 312 (1761)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~-~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 312 (1761)
.+........ .......+ +|+|||+|||||||+||||+++|+++++.+.+....++++++|++++++|++|++++..
T Consensus 161 -~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~ 238 (549)
T 3g7s_A 161 -SEVMDSGSED-FENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGL 238 (549)
T ss_dssp -HHHHHHSCSC-CCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHH
T ss_pred -HHHHhcCccc-cccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHH
Confidence 0111111111 11222334 89999999999999999999999999999999999999999999999999999999986
Q ss_pred HHHHHHhcCcEEEEeCCccccCCHHHHHHHHHhcCceEEEecCHHHHHHhhcCCCCC--CCCCCceeEEEecCCCccCCH
Q psy14338 313 SVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKDHK--DISLSSLRLLLVGDGANPWSL 390 (1761)
Q Consensus 313 ~i~~~L~~G~~lvi~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~~ll~~~~~~--~~~l~~Lr~v~~gg~Ge~l~~ 390 (1761)
++.++..|+++++.+ .+++..+++.|+++++|+++++| +++..++...... ..++++||.+++| |+++++
T Consensus 239 -~~~~l~~G~~~~~~~----~~~~~~~~~~i~~~~~t~~~~~P-~~~~~l~~~~~~~~~~~~~~~lr~~~~g--g~~l~~ 310 (549)
T 3g7s_A 239 -VNLMVTVGNEYVVMG----MFNQEMLAENIEKYKGTFSWAVP-PALNVLVNTLESSNKTYDWSYLKVFATG--AWPVAP 310 (549)
T ss_dssp -HTTHHHHCCEEEEES----SCCHHHHHHHHHHTTCCEEEECH-HHHHHHHHHHHHSCCCCCCTTCCEEEEE--SSCCCH
T ss_pred -HHHHHhcCceEEEcC----CCCHHHHHHHHHHhCCeEEEeCC-HHHHHHHhhhhhhcccCCccceeEEEeC--CccCCH
Confidence 899999999999998 78999999999999999999996 4777776543322 2568999999999 999999
Q ss_pred HHHHHHHHHhhh-CCCCCCccccccccccccceEeecCCCCCcccCCCccccccCcccceeeecCCCccCcccccccCCC
Q psy14338 391 SSCDQFLSVFQS-KGLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQV 469 (1761)
Q Consensus 391 ~~~~~~~~~~~~-~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p 469 (1761)
++.++|.+.+.. .|.+..+++|.||+||++.+++..+.. ......++|+|
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~-----------------------------~~~~~~~~G~p 361 (549)
T 3g7s_A 311 ALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPL-----------------------------RLDKSTTQGVP 361 (549)
T ss_dssp HHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGG-----------------------------GGGGTTSCCEE
T ss_pred HHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCcc-----------------------------ccCcCCCcccc
Confidence 999999987311 032122599999999999877654311 01246789999
Q ss_pred CCCcEEEEEe-CCCCcccCCCCCceEEEEecCCccccccCCCccccccccccccccCCCccCCCceEeecceEEEeCCCe
Q psy14338 470 MPGCIMTVVK-MDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGFLGPGGL 548 (1761)
Q Consensus 470 ~~~~~~~I~d-~~~~~~~~p~G~~GEL~i~G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~~~~dG~ 548 (1761)
+++++++|+| ++++ ++|.|++|||+|+|+++++||||+|++|+++|..++ ++.+||||||+|++|+||.
T Consensus 362 ~~~~~~~i~d~~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~--------~g~~~~~TGDl~~~~~dG~ 431 (549)
T 3g7s_A 362 MSDIELKVISLEDGR--ELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDE--------KGRKFFRTGDVGFIDEEGF 431 (549)
T ss_dssp CTTCEEEEECSSSCC--EECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECT--------TCCEEEEEEEEEEECTTSC
T ss_pred CCCCEEEEEeCCCCc--CCCCCCceEEEEECcchhhhhCCChhhhhhhhhccC--------CCCceEccCcEEEEcCCce
Confidence 9999999999 6665 699999999999999999999999999999996443 2367999999999999999
Q ss_pred EEEEeccCCeEEECCcccChHHHHHHHHhcCCccccccceEEEEEEec-CCCceEEEEEEeCCC----CCHHHHHHHHHH
Q psy14338 549 VFVCGSRDGLMTVTGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIRV-LRDERICVIAEQRPD----CSEEESFQWMSR 623 (1761)
Q Consensus 549 l~~~GR~d~qvki~G~rIe~~eIE~~l~~~~~v~~~~~~~a~v~~~~~-~~~~~l~a~v~~~~~----~~~~~l~~~l~~ 623 (1761)
|+|+||+|||||++|+||+|.|||++|.+++.| .+|+|++.++ ..++.++|+++..++ .+.++++++|++
T Consensus 432 l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V-----~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~ 506 (549)
T 3g7s_A 432 LHFQDRVKEVIKYKGYTIAPFELEALLMKHEAV-----MDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRE 506 (549)
T ss_dssp EEEEEEC------------CHHHHHHHTTSTTE-----EEEEEECCCC------CEEEEEECSTTTTSCCHHHHHHHHHT
T ss_pred EEEeccccceEEECCEEECHHHHHHHHHhCCCe-----eeEEEEeeEccccCceEEEEEEECCCccCcCCHHHHHHHHHH
Confidence 999999999999999999999999999999888 7999999885 467888999998754 678999999999
Q ss_pred HHHHhhhcceeeeeEEEEeCCCCccCCCCCcccHHHHHHHHHcC
Q psy14338 624 VLQAVDSIHQVGLYCLALVPPNYLPKTPLGGIHLSECKRRFLEG 667 (1761)
Q Consensus 624 ~Lp~y~~P~~i~~~~v~~v~~~~lP~t~~GKidR~~L~~~~~~~ 667 (1761)
+||.||+|+.+ +.+++||+|+||||||++|++.+...
T Consensus 507 ~L~~~~~P~~i-------~~v~~lP~t~~GKi~R~~L~~~~~~~ 543 (549)
T 3g7s_A 507 RISGYKRVREV-------EFVEELPRTASGKLLRRLLREKEAEG 543 (549)
T ss_dssp TCC-----CCC-------CEEEECC-------------------
T ss_pred hccCcccceEE-------EEeccCCCCCCcCEeHHHHHHHhhcc
Confidence 99999999987 44599999999999999999887543
No 11
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=6e-75 Score=758.31 Aligned_cols=491 Identities=15% Similarity=0.172 Sum_probs=329.9
Q ss_pred chhHHHHHHHHhhhcCCCcEEEEECCCCceeEEEeHHHHHHHHHHHHHHhhcCCCCccccCCCCCCCEEEEEccCCCchh
Q psy14338 80 PRNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPIN 159 (1761)
Q Consensus 80 ~~~l~~~~~~~a~~~pd~~Av~~~d~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~~~~~~Gv~~g~~V~l~~~~s~~~~ 159 (1761)
..+++++|+++++++||++|+++.+ +++||+||+++++++|++|+ +.|+++||+|+|+++|+ ++
T Consensus 74 ~~~l~~~l~~~a~~~pd~~A~~~~~------~~~Ty~el~~~~~~lA~~L~--------~~Gv~~gd~V~i~~~n~--~~ 137 (570)
T 4gr5_A 74 GACVHELFEAQAARAPDAVALLHEA------DELTYGALNERANRLAHRLV--------GLGVAPGTLVGVHLERG--FD 137 (570)
T ss_dssp SCCHHHHHHHHHHHCTTSEEEEETT------EEEEHHHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCSS--HH
T ss_pred cCCHHHHHHHHHHHCCCCeEEECCC------CcEeHHHHHHHHHHHHHHHH--------HcCCCCCCEEEEEeCCC--HH
Confidence 4689999999999999999999765 69999999999999999999 88999999999999999 99
Q ss_pred HHHHHHHHHHhCCeEEecCCCCCcCccchhHHHHHHhcCCCcEEEEcccccccCcccccccceeccCCCcceeEEecccc
Q psy14338 160 FLCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKLTWFVTEHLA 239 (1761)
Q Consensus 160 ~vva~lAvlkaG~~~vpldp~~p~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (1761)
+++++|||+|+|+++||++|.++.+ |+.+++++++++++|++......+..... +.. .+...
T Consensus 138 ~~~~~lA~~~~G~~~vpl~~~~~~~-----~l~~~l~~~~~~~~i~~~~~~~~~~~~~~---~~~----------~~~~~ 199 (570)
T 4gr5_A 138 MVVALLAVLKAGGGYTMLDPQFPVE-----RLALSLEDTGAPLLVTSRPLSGRLTGTTT---LYV----------EDEAA 199 (570)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHH-----HHHHHHHHHTCSEEEECTTTTTSSCSSEE---EEC----------CC---
T ss_pred HHHHHHHHHHHCCEEEEcCCCChHH-----HHHHHHHhcCCCEEEecchhhhcccCCcc---eee----------ecccc
Confidence 9999999999999999999999976 99999999999999999876554432210 000 00001
Q ss_pred CCCCCCCCCCCCCCCCcEEEEecCCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCCeEEEccCCcchhhhHHHHHHHHh
Q psy14338 240 KTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFKRETGLWHSVLTSVL 319 (1761)
Q Consensus 240 ~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~i~~~L~ 319 (1761)
.............++|+|||+|||||||+||||+++|+++.+.+.+ ...++++++|++++++|++|+.+.+. ++.+|+
T Consensus 200 ~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~ 277 (570)
T 4gr5_A 200 SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLE-LFGALL 277 (570)
T ss_dssp ----CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHH-HHHHHT
T ss_pred ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHH-HHHHHh
Confidence 1111112234467899999999999999999999999999876654 34568899999999999999998885 999999
Q ss_pred cCcEEEEeCCccccCCHHHHHHHHHhcCceEEEecCHHHHHHhhcCCCCCCCCCCceeEEEecCCCccCCHHHHHHHHHH
Q psy14338 320 NGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGANPWSLSSCDQFLSV 399 (1761)
Q Consensus 320 ~G~~lvi~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~~ll~~~~~~~~~l~~Lr~v~~gg~Ge~l~~~~~~~~~~~ 399 (1761)
.|+++++.+.. .+++..+++.|+++++|++.++| +++..++... ...+++||.+++| |++++++++++|.+.
T Consensus 278 ~G~~~v~~~~~--~~~~~~~~~~i~~~~vt~~~~~P-~~~~~l~~~~---~~~~~~lr~~~~g--G~~l~~~~~~~~~~~ 349 (570)
T 4gr5_A 278 FGARCVLQSGQ--NPDPLEIGELVARHGVTMLQLSA-SLFNFLVDEV---PEAFEGVRYAITG--GEPASVPHVAKARRD 349 (570)
T ss_dssp TTCEEEECSSS--SCCHHHHHHHHHHHTCCEEEEEH-HHHHHHHHHC---GGGGTTCSEEEEE--SSCCCHHHHHHHHHH
T ss_pred cCCEEEEcCCc--cCCHHHHHHHHHHcCCcEEEecH-HHHHHHHhhc---hhhCCCceEEEEe--cccCCHHHHHHHHHh
Confidence 99999998743 57899999999999999999996 5777776543 2357899999999 999999999999998
Q ss_pred hhhCCCCCCccccccccccccceEeecCCCCCcccCCCccccccCcccceeeecCCCccCcccccccCCCCCCcEEEEEe
Q psy14338 400 FQSKGLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQVMPGCIMTVVK 479 (1761)
Q Consensus 400 ~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~I~d 479 (1761)
++. + .++|.||+||++.+++..... .........++|+|++|++++|+|
T Consensus 350 ~~~--~---~l~~~YG~TE~~~~~~~~~~~--------------------------~~~~~~~~~~iG~p~~~~~v~i~d 398 (570)
T 4gr5_A 350 HPA--L---RLGNGYGPAESMGFTTHHAVV--------------------------AGDLSGTALPIGVPLAGKRAYVLD 398 (570)
T ss_dssp CTT--C---EEEEEECCGGGCSCSEEEECC--------------------------GGGTTSSSCCCBEECTTEEEEEEC
T ss_pred CCC--c---EEEEeechhhheeeeeeeeec--------------------------ccccCCCccccceeeCCCEEEEEC
Confidence 753 3 499999999998765543211 000112356799999999999999
Q ss_pred CCCCcccCCCCCceEEEEecCCccccccCCCccccccccccccccCCCccCCCceEeecceEEEeCCCeEEEEeccCCeE
Q psy14338 480 MDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGFLGPGGLVFVCGSRDGLM 559 (1761)
Q Consensus 480 ~~~~~~~~p~G~~GEL~i~G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qv 559 (1761)
++++ ++|.|++|||+|+|+++++||||+|++|+++|..+||... +++|||||||+|++|+||+|+|+||+||||
T Consensus 399 ~~~~--~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~----~~~~w~~TGDlg~~d~dG~l~~~GR~~d~I 472 (570)
T 4gr5_A 399 DDLK--PAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGP----GGERMYRTGDLARRRADGVLEYVGRADDQV 472 (570)
T ss_dssp TTSC--BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCS----SCCEEEEEEEEEEECTTSCEEEEEC-----
T ss_pred CCCC--CCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCC----CCCEEEeCCCeEEECCCCeEEEEcccCCEE
Confidence 9987 5999999999999999999999999999999999998543 247999999999999999999999999999
Q ss_pred EECCcccChHHHHHHHHhcCCccccccceEEEEEEecC-CCceEEEEEEeCC---CCCHHHHHHHHHHHHHHhhhcceee
Q psy14338 560 TVTGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIRVL-RDERICVIAEQRP---DCSEEESFQWMSRVLQAVDSIHQVG 635 (1761)
Q Consensus 560 ki~G~rIe~~eIE~~l~~~~~v~~~~~~~a~v~~~~~~-~~~~l~a~v~~~~---~~~~~~l~~~l~~~Lp~y~~P~~i~ 635 (1761)
|++|+||+|.|||++|.+++.| .+|+|++.++. +++.++|+++... ..+.++++++|+++||.||+|..+
T Consensus 473 k~~G~~v~p~eIE~~l~~~p~V-----~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i- 546 (570)
T 4gr5_A 473 KIRGFRVEPGEVEARLVGHPAV-----RQAAVLAQDSRLGDKQLVAYVVAERADAPPDAAELRRHVAEALPAYMVPVEC- 546 (570)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EECcEEeCHHHHHHHHhcCCCc-----ceEEEEEeeCCCCCeEEEEEEEecCCCCCcCHHHHHHHHHhhCccccCCcEE-
Confidence 9999999999999999999888 79999998754 6778999988654 256789999999999999999986
Q ss_pred eeEEEEeCCCCccCCCCCcccHHHHHHH
Q psy14338 636 LYCLALVPPNYLPKTPLGGIHLSECKRR 663 (1761)
Q Consensus 636 ~~~v~~v~~~~lP~t~~GKidR~~L~~~ 663 (1761)
+.+++||+|+||||||++|++.
T Consensus 547 ------~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 547 ------VPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp ----------------------------
T ss_pred ------EEcccCCCCCCcCcchHhhhcc
Confidence 6679999999999999999864
No 12
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=2.8e-73 Score=732.10 Aligned_cols=489 Identities=14% Similarity=0.169 Sum_probs=405.9
Q ss_pred hhHHHHHHHHhhhcCCCcEEEEECCCCceeEEEeHHHHHHHHHHHHHHhhcCCCCccccCCCCCCCEEEEEccCCCchhH
Q psy14338 81 RNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINF 160 (1761)
Q Consensus 81 ~~l~~~~~~~a~~~pd~~Av~~~d~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~~~~~~Gv~~g~~V~l~~~~s~~~~~ 160 (1761)
.+++++|+++++++||++|+.+.+. + +++||+||+++++++|+.|+ +.|+++||+|+|+++|+ +++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~-~---~~~Ty~el~~~~~~~A~~L~--------~~Gv~~gd~V~i~~~~~--~~~ 67 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPAR-G---LRLTHAELRARVEAVAARLH--------ADGLRPQQRVAVVAPNS--ADV 67 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTT-T---EEEEHHHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCSC--HHH
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCC-C---ceeEHHHHHHHHHHHHHHHH--------HcCCCCCCEEEEEcCCC--HHH
Confidence 4689999999999999999987521 2 68999999999999999999 88999999999999999 999
Q ss_pred HHHHHHHHHhCCeEEecCCCCCcCccchhHHHHHHhcCCCcEEEE--cccccccC-cccccccceeccCCCcceeEEecc
Q psy14338 161 LCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALT--SDACLKGL-PKTAAGEVVAFKGWPKLTWFVTEH 237 (1761)
Q Consensus 161 vva~lAvlkaG~~~vpldp~~p~~~~~~~rl~~il~~~~~~~vl~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 237 (1761)
++++|||+|+|+++||+||.++.+ |+.+++++++++++|+ +....+.+ .......++.+.+. . ...
T Consensus 68 ~~~~lA~~~~G~~~vpl~~~~~~~-----~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~ 136 (504)
T 1t5h_X 68 VIAILALHRLGAVPALLNPRLKSA-----ELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDL-----V-RDG 136 (504)
T ss_dssp HHHHHHHHHHTCEEEEECTTSCHH-----HHHHHHHHTTCSEEEECC--CHHHHHHHHCCCCEEEEGGGT-----E-ETT
T ss_pred HHHHHHHHHhCcEEEecCCccChH-----HHHHHHhhcCCcEEEEecchhhhhhhhhccccceeEEecch-----h-hcC
Confidence 999999999999999999999976 8999999999999999 65543322 11100011111100 0 000
Q ss_pred ccCCCCCCCCCCCCCCCCcEEEEecCCCCCCceEEEEchHHHHHHHHHHHHHcCC--CCCCeEEEccCCcchhhhHHHHH
Q psy14338 238 LAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACHY--TEGENMVCVLDFKRETGLWHSVL 315 (1761)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~--~~~d~~l~~~~~~~~~~~~~~i~ 315 (1761)
...............++++|||+|||||||+||||+++|+++.+.+.+....+++ +++|++++++|++|+++++..++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~ 216 (504)
T 1t5h_X 137 EPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLV 216 (504)
T ss_dssp EECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHH
T ss_pred cccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHH
Confidence 0000011111234578999999999999999999999999999999988888888 88999999999999999854589
Q ss_pred HHHhcCcEEEEeCCccccCCHHHHHHHHHhcCceEEEecCHHHHHHhhcCC-C-CCCCCCCceeEEEecCCCccCCHHHH
Q psy14338 316 TSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATK-D-HKDISLSSLRLLLVGDGANPWSLSSC 393 (1761)
Q Consensus 316 ~~L~~G~~lvi~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~~ll~~~-~-~~~~~l~~Lr~v~~gg~Ge~l~~~~~ 393 (1761)
.+|+.|+++++.+ .+++..+++.|+++++|+++++| +++..++... . ....++++||.+++| |+++++++.
T Consensus 217 ~~l~~G~~~v~~~----~~~~~~~~~~i~~~~~t~~~~~P-~~~~~l~~~~~~~~~~~~l~~lr~~~~g--G~~l~~~~~ 289 (504)
T 1t5h_X 217 AALALDGTYVVVE----EFRPVDALQLVQQEQVTSLFATP-THLDALAAAAAHAGSSLKLDSLRHVTFA--GATMPDAVL 289 (504)
T ss_dssp HHHHTTCEEEECS----SCCHHHHHHHHHHHTCCEEECCH-HHHHHHHHHHCCTTCCCCCTTCCEEEEC--CTTCCHHHH
T ss_pred HHHHcCceEEeCC----CCCHHHHHHHHHHhCCeEEEeCh-HHHHHHHhhhccccccccCccccEEEEc--CCcCCHHHH
Confidence 9999999999998 68999999999999999999996 5777776543 2 234568999999999 999999999
Q ss_pred HHHHHHhhhCCCCCCccccccccccccceEeecCCCCCcccCCCccccccCcccceeeecCCCccCcccccccCCCCCCc
Q psy14338 394 DQFLSVFQSKGLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQVMPGC 473 (1761)
Q Consensus 394 ~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~ 473 (1761)
++|.+.+ |. .++|.||+||+++ +.... .....++|+|++++
T Consensus 290 ~~~~~~~---~~---~~~~~YG~TE~~~-~~~~~--------------------------------~~~~~~~g~p~~~~ 330 (504)
T 1t5h_X 290 ETVHQHL---PG---EKVNIYGTTEAMN-SLYMR--------------------------------QPKTGTEMAPGFFS 330 (504)
T ss_dssp HHHHHHC---CS---EEEEEEEETTTEE-EEEEE--------------------------------SCSSSSEEBCCTTC
T ss_pred HHHHHhc---Cc---ceeeeeccccccc-ccccc--------------------------------CCCCCccccCCCCC
Confidence 9999988 33 3999999999942 22111 01246799999999
Q ss_pred EEEEEeCCCC-cccCCCCCceEEEEe-cCCccccccCCCccccccccccccccCCCccCCCceEeecceEEEeCCCeEEE
Q psy14338 474 IMTVVKMDSP-SYLCKTDEVGEICVA-STGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGFLGPGGLVFV 551 (1761)
Q Consensus 474 ~~~I~d~~~~-~~~~p~G~~GEL~i~-G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~~~~dG~l~~ 551 (1761)
+++|+|+++. ..++|.|+.|||+|+ |+++++||+|+|+.|+++|. +|||||||+|++++||+|+|
T Consensus 331 ~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~-------------~g~~~TGDlg~~~~dG~l~~ 397 (504)
T 1t5h_X 331 EVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQ-------------DGWYRTSDVAVWTPEGTVRI 397 (504)
T ss_dssp CEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEE-------------TTEEEEEEEEEECTTSCEEE
T ss_pred ceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhc-------------CCccccCcEEEECCCceEEE
Confidence 9999998771 126999999999999 99999999999999999994 78999999999999999999
Q ss_pred EeccCCeEEECCcccChHHHHHHHHhcCCccccccceEEEEEEecC-CCceEEEEEEeCCC--CCHHHHHHHHHH-HHHH
Q psy14338 552 CGSRDGLMTVTGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIRVL-RDERICVIAEQRPD--CSEEESFQWMSR-VLQA 627 (1761)
Q Consensus 552 ~GR~d~qvki~G~rIe~~eIE~~l~~~~~v~~~~~~~a~v~~~~~~-~~~~l~a~v~~~~~--~~~~~l~~~l~~-~Lp~ 627 (1761)
+||+|||||++|+||+|.|||++|.+++.| .+|+|++.++. .++.++|+|++.++ .+.++++++|++ +||.
T Consensus 398 ~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V-----~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~~L~~ 472 (504)
T 1t5h_X 398 LGRVDDMIISGGENIHPSEIERVLGTAPGV-----TEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELAD 472 (504)
T ss_dssp EEEGGGCEEETTEEECHHHHHHHHTTSTTE-----EEEEEEEEECSSSSEEEEEEEEECTTCCCCHHHHHHHHHTSSCCG
T ss_pred eCcccCEEEECCEEECHHHHHHHHHhCCCc-----ceEEEEEeecCCCCcEEEEEEEecCCcCcCHHHHHHHHhhccCcc
Confidence 999999999999999999999999998888 79999999854 67899999998654 678999999999 9999
Q ss_pred hhhcceeeeeEEEEeCCCCccCCCCCcccHHHHHHHHH
Q psy14338 628 VDSIHQVGLYCLALVPPNYLPKTPLGGIHLSECKRRFL 665 (1761)
Q Consensus 628 y~~P~~i~~~~v~~v~~~~lP~t~~GKidR~~L~~~~~ 665 (1761)
||+|+.+ +.+++||+|+||||||++|++.+.
T Consensus 473 ~~~P~~i-------~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 473 FKRPKRY-------FILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp GGSCSEE-------EECSCCCBCTTSCBCHHHHHHHHC
T ss_pred cccceEE-------EEhhhCCCCCCCCEeHHHHHHHhc
Confidence 9999986 456999999999999999998764
No 13
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=1.4e-72 Score=745.24 Aligned_cols=513 Identities=16% Similarity=0.172 Sum_probs=418.4
Q ss_pred hhHHHHHHHHhhhcCCCcEEEEECCCCceeEEEeHHHHHHHHHHHHHHhhcCCCCccccCCCCCCCEEEEEccCCCchhH
Q psy14338 81 RNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINF 160 (1761)
Q Consensus 81 ~~l~~~~~~~a~~~pd~~Av~~~d~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~~~~~~Gv~~g~~V~l~~~~s~~~~~ 160 (1761)
.+++++|+++++++||++|+++.+.++...+++||+||+++++++|+.|+ +.|+++||+|+|+++|+ +++
T Consensus 76 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~--------~~Gv~~Gd~V~i~~~~~--~e~ 145 (652)
T 1pg4_A 76 NLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLL--------DLGIKKGDVVAIYMPMV--PEA 145 (652)
T ss_dssp CHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHH--------HHTCCTTCEEEEECCSS--HHH
T ss_pred hHHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHH--------HcCCCCCCEEEEEeCCC--HHH
Confidence 46899999999999999999986432222378999999999999999999 89999999999999999 999
Q ss_pred HHHHHHHHHhCCeEEecCCCCCcCccchhHHHHHHhcCCCcEEEEcccccccCc-------------cc---ccccceec
Q psy14338 161 LCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLP-------------KT---AAGEVVAF 224 (1761)
Q Consensus 161 vva~lAvlkaG~~~vpldp~~p~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~-------------~~---~~~~~~~~ 224 (1761)
++++|||+|+|+++||++|.++.+ |+.++++++++++||+++....... .. ....++.+
T Consensus 146 vva~lA~~~~Gav~vpl~~~~~~~-----~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~ 220 (652)
T 1pg4_A 146 AVAMLACARIGAVHSVIFGGFSPE-----AVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVL 220 (652)
T ss_dssp HHHHHHHHHHTCEEEECCTTSCHH-----HHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEE
T ss_pred HHHHHHHHHcCcEEEecCCCCCHH-----HHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEE
Confidence 999999999999999999999976 8999999999999999876432110 00 00111111
Q ss_pred cCCC-cc------eeEEeccccCCCCCCCCCCCCCCCCcEEEEecCCCCCCceEEEEchHHHHHHHH-HHHHHcCCCCCC
Q psy14338 225 KGWP-KL------TWFVTEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCR-ALTQACHYTEGE 296 (1761)
Q Consensus 225 ~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d 296 (1761)
.... .. .....+..... ..........++|++||+|||||||+||||+++|++++..+. .....++++++|
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d 299 (652)
T 1pg4_A 221 KRTGSDIDWQEGRDLWWRDLIEKA-SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGD 299 (652)
T ss_dssp CSSCCCCCCCBTTEEEHHHHHTTS-CSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTC
T ss_pred eCCCCcccccCCCceeHHHHHhhc-CCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCC
Confidence 1100 00 00001111111 111223345789999999999999999999999999887664 456678999999
Q ss_pred eEEEccCCcchhhhHHHHHHHHhcCcEEEEeCCccccCCHHHHHHHHHhcCceEEEecCHHHHHHhhcCCC--CCCCCCC
Q psy14338 297 NMVCVLDFKRETGLWHSVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKD--HKDISLS 374 (1761)
Q Consensus 297 ~~l~~~~~~~~~~~~~~i~~~L~~G~~lvi~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~~ll~~~~--~~~~~l~ 374 (1761)
++++++|++|++++...++.+|++|+++++.+.....+++..+++.|+++++|+++++| +++..++.... ....+++
T Consensus 300 ~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P-~~~~~l~~~~~~~~~~~~l~ 378 (652)
T 1pg4_A 300 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAP-TAIRALMAEGDKAIEGTDRS 378 (652)
T ss_dssp EEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECH-HHHHHHHTTGGGGTTTCCCT
T ss_pred EEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCH-HHHHHHHhcCccccccCCcC
Confidence 99999999999998435899999999999998432236899999999999999999996 58887776543 3445789
Q ss_pred ceeEEEecCCCccCCHHHHHHHHHHhhhCCCCCCccccccccccccceEeecCCCCCcccCCCccccccCcccceeeecC
Q psy14338 375 SLRLLLVGDGANPWSLSSCDQFLSVFQSKGLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQ 454 (1761)
Q Consensus 375 ~Lr~v~~gg~Ge~l~~~~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 454 (1761)
+||.+++| ||+++++++++|.+.++..++ .++|.||+||++.+++.....
T Consensus 379 sLr~i~~g--Ge~l~~~~~~~~~~~~g~~~~---~i~~~YG~TE~~~~~~~~~~~------------------------- 428 (652)
T 1pg4_A 379 SLRILGSV--GEPINPEAWEWYWKKIGKEKC---PVVDTWWQTETGGFMITPLPG------------------------- 428 (652)
T ss_dssp TCCEEEEE--SSCCCHHHHHHHHHHTTTTCS---CEEEEBCCGGGSSCSBCCCTT-------------------------
T ss_pred ceEEEEEe--cCCCCHHHHHHHHHHhCCCCC---cEEccccCcccccceecCCCC-------------------------
Confidence 99999999 999999999999998842114 499999999998655432210
Q ss_pred CCccCcccccccCCCCCCcEEEEEeCCCCcccCCCCCceEEEEec--CCccccccCCCccccccccccccccCCCccCCC
Q psy14338 455 ENSLTSLTLQDCGQVMPGCIMTVVKMDSPSYLCKTDEVGEICVAS--TGTGSQYWGLPGLSNTTFKVTPLLADGTALSQD 532 (1761)
Q Consensus 455 ~~~~~~~~~~~iG~p~~~~~~~I~d~~~~~~~~p~G~~GEL~i~G--~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~ 532 (1761)
....+.+++|+|++|++++|+|++++ ++|.|+.|||+|+| |++++||||+|+.|.+.|... .+
T Consensus 429 ---~~~~~~~s~G~p~~g~~v~i~d~~g~--~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~----------~~ 493 (652)
T 1pg4_A 429 ---AIELKAGSATRPFFGVQPALVDNEGH--PQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFST----------FK 493 (652)
T ss_dssp ---TCCBCTTCCBSBCTTCCEEEECTTCC--BCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSS----------ST
T ss_pred ---CcCccCCccccCcCCCeEEEECCCCC--CcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhc----------CC
Confidence 00234678999999999999999987 58999999999999 799999999999998887421 26
Q ss_pred ceEeecceEEEeCCCeEEEEeccCCeEEECCcccChHHHHHHHHhcCCccccccceEEEEEEecC-CCceEEEEEEeCCC
Q psy14338 533 TYTRSGLLGFLGPGGLVFVCGSRDGLMTVTGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIRVL-RDERICVIAEQRPD 611 (1761)
Q Consensus 533 ~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rIe~~eIE~~l~~~~~v~~~~~~~a~v~~~~~~-~~~~l~a~v~~~~~ 611 (1761)
|||||||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+++.| .+|+|++.++. .++.++|||++.++
T Consensus 494 g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V-----~ea~Vvg~~~~~~g~~l~a~Vv~~~~ 568 (652)
T 1pg4_A 494 NMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKI-----AEAAVVGIPHAIKGQAIYAYVTLNHG 568 (652)
T ss_dssp TSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTE-----EEEEEEEEEETTTEEEEEEEEEECTT
T ss_pred CEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCc-----ceEEEEEEEcCCCCeEEEEEEEECCC
Confidence 8999999999999999999999999999999999999999999998888 79999999864 67889999998765
Q ss_pred C--C---HHHHHHHHHHHHHHhhhcceeeeeEEEEeCCCCccCCCCCcccHHHHHHHHHcC
Q psy14338 612 C--S---EEESFQWMSRVLQAVDSIHQVGLYCLALVPPNYLPKTPLGGIHLSECKRRFLEG 667 (1761)
Q Consensus 612 ~--~---~~~l~~~l~~~Lp~y~~P~~i~~~~v~~v~~~~lP~t~~GKidR~~L~~~~~~~ 667 (1761)
. + .++++++|+++||.||+|..| +.+++||+|+||||+|++|++.+...
T Consensus 569 ~~~~~~~~~~l~~~l~~~l~~~~~P~~i-------~~v~~lP~T~sGKi~R~~L~~~~~~~ 622 (652)
T 1pg4_A 569 EEPSPELYAEVRNWVRKEIGPLATPDVL-------HWTDSLPKTRSGKIMRRILRKIAAGD 622 (652)
T ss_dssp CCCCHHHHHHHHHHHHHHTCGGGCCSEE-------EECSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcCCeEE-------EEcCCCCCCCCccchHHHHHHHHhCC
Confidence 3 2 478999999999999999986 55699999999999999999998753
No 14
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=1.5e-72 Score=726.67 Aligned_cols=494 Identities=15% Similarity=0.155 Sum_probs=415.9
Q ss_pred hHHHHHHHHhhhcCCCcEEEEECCCCceeEEEeHHHHHHHHHHHHHHhhcCCCCcccc-CCCCCCCEEEEEccCCCchhH
Q psy14338 82 NLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSE-SSLKSGDRIALVYPNNDPINF 160 (1761)
Q Consensus 82 ~l~~~~~~~a~~~pd~~Av~~~d~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~~~~~-~Gv~~g~~V~l~~~~s~~~~~ 160 (1761)
++.++|+++|+++|+++|+++.+ +++||+||+++++++|+.|+ + .|+++|++|+++++|+ +++
T Consensus 2 ~l~~~l~~~a~~~p~~~Al~~~~------~~~Ty~eL~~~~~~~A~~L~--------~~~~~~~g~~V~i~~~n~--~~~ 65 (511)
T 3e7w_A 2 KLLHAIQTHAETYPQTDAFRSQG------QSLTYQELWEQSDRAAAAIQ--------KRISGEKKSPILVYGHME--PHM 65 (511)
T ss_dssp CHHHHHHHHHHHSTTSEEEEETT------EEEEHHHHHHHHHHHHHHHT--------TTSCSSSCCCEEEEESSC--HHH
T ss_pred cHHHHHHHHHHHCCCCeEEEcCC------ceeeHHHHHHHHHHHHHHHH--------HhcCCCCCCeEEEEecCC--HHH
Confidence 58899999999999999999755 79999999999999999998 5 3788999999999999 999
Q ss_pred HHHHHHHHHhCCeEEecCCCCCcCccchhHHHHHHhcCCCcEEEEcccccccCcccccccceeccCCCcceeEEeccccC
Q psy14338 161 LCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKLTWFVTEHLAK 240 (1761)
Q Consensus 161 vva~lAvlkaG~~~vpldp~~p~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1761)
++++|||+++|+++||+||.++.+ |+.+++++++++++|+++.......... ...+. ..+....
T Consensus 66 ~~~~lA~~~~G~~~vpl~~~~~~~-----~l~~~l~~~~~~~li~~~~~~~~~~~~~-~~~~~----------~~~~~~~ 129 (511)
T 3e7w_A 66 IVSFLGSVKAGHPYIPVDLSIPSE-----RIAKIIESSGAELLIHAAGLSIDAVGQQ-IQTVS----------AEELLEN 129 (511)
T ss_dssp HHHHHHHHHHTCCEEEEETTSCHH-----HHHHHHHHHTCCEEEESSSCCTTCCCCS-SCEEE----------HHHHHTS
T ss_pred HHHHHHHHHhCCEEEecCCCChHH-----HHHHHHHhCCCCEEEecccccchhcccc-cceec----------Hhhhhcc
Confidence 999999999999999999999976 9999999999999999765322111000 00000 0111111
Q ss_pred CCCCCCCCCCCCCCCcEEEEecCCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCCeEEEccCCcchhhhHHHHHHHHhc
Q psy14338 241 TPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFKRETGLWHSVLTSVLN 320 (1761)
Q Consensus 241 ~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~i~~~L~~ 320 (1761)
............++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++++|++|+.+++. ++.+|+.
T Consensus 130 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~ 208 (511)
T 3e7w_A 130 EGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMD-LYPCLQS 208 (511)
T ss_dssp CSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHH-HHHHHHT
T ss_pred ccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHH-HHHHHhc
Confidence 111112223457899999999999999999999999999999999999999999999999999999999985 9999999
Q ss_pred CcEEEEeCCccccCCHHHHHHHHHhcCceEEEecCHHHHHHhhcCCCCCCCCCCceeEEEecCCCccCCHHHHHHHHHHh
Q psy14338 321 GMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGANPWSLSSCDQFLSVF 400 (1761)
Q Consensus 321 G~~lvi~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~~ll~~~~~~~~~l~~Lr~v~~gg~Ge~l~~~~~~~~~~~~ 400 (1761)
|+++++.+... .+++..+++.|+++++|++.++| +++..++..+......++++|.+++| |+++++++.++|.+.+
T Consensus 209 G~~~~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P-~~~~~l~~~~~~~~~~~~~l~~~~~~--G~~l~~~~~~~~~~~~ 284 (511)
T 3e7w_A 209 GGTLHCVTKDA-VNKPKVLFEELKKSGLNVWTSTP-SFVQMCLMDPGFSQDLLPHADTFMFC--GEVLPVSVAKALLERF 284 (511)
T ss_dssp TCEEEECCHHH-HHSHHHHHHHHHHHCCSEEEECH-HHHHHHHTSTTCSTTTCTTCCEEEEC--SSCCCHHHHHHHHHHC
T ss_pred CCEEEEcChhh-hcCHHHHHHHHHHcCCcEEEecH-HHHHHHHhccccccccCCcccEEEEe--cCCCCHHHHHHHHHHC
Confidence 99999988422 37899999999999999999996 58888887776666778999999999 9999999999999998
Q ss_pred hhCCCCCCccccccccccccceEeecCCCCCcccCCCccccccCcccceeeecCCCccCcccccccCCCCCCcEEEEEeC
Q psy14338 401 QSKGLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQVMPGCIMTVVKM 480 (1761)
Q Consensus 401 ~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~I~d~ 480 (1761)
+. . .++|.||+||++..++..... ..........++|+|+++++++|+|+
T Consensus 285 ~~--~---~i~~~YG~TE~~~~~~~~~~~-------------------------~~~~~~~~~~~~G~~~~~~~~~i~d~ 334 (511)
T 3e7w_A 285 PK--A---KIFNTYGPTEATVAVTSVEIT-------------------------NDVISRSESLPVGFAKPDMNIFIMDE 334 (511)
T ss_dssp TT--C---EEEECCCCGGGSSCSEEEEEC-------------------------HHHHTTCSSCCCBEECTTCEEEEECT
T ss_pred CC--c---EEEeCcccchheeeeeEEecc-------------------------ccccccCCcCCCcceeCCCEEEEECC
Confidence 53 2 499999999998655432210 00001123568999999999999999
Q ss_pred CCCcccCCCCCceEEEEecCCccccccCCCccccccccccccccCCCccCCCceEeecceEEEeCCCeEEEEeccCCeEE
Q psy14338 481 DSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGFLGPGGLVFVCGSRDGLMT 560 (1761)
Q Consensus 481 ~~~~~~~p~G~~GEL~i~G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvk 560 (1761)
+++ ++|.|++|||+|+|+++++||||+|++|+++|..+ ++++||||||+|++ +||+|+|+||+|||||
T Consensus 335 ~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~---------~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik 402 (511)
T 3e7w_A 335 EGQ--PLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSH---------EGQWAYRTGDAGFI-QDGQIFCQGRLDFQIK 402 (511)
T ss_dssp TSC--BCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEES---------SSSEEEEEEEEEEE-ETTEEEEEEESSSEEE
T ss_pred CCC--CCCCCCceEEEEecCccChhhCCCcccchhhhcCC---------CCCEEEeCCCeEEc-cCCeEEEEccccCEEE
Confidence 987 59999999999999999999999999999999643 13568999999999 5999999999999999
Q ss_pred ECCcccChHHHHHHHHhcCCccccccceEEEEEEec-CCCceEEEEEEeCCCCC------HHHHHHHHHHHHHHhhhcce
Q psy14338 561 VTGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIRV-LRDERICVIAEQRPDCS------EEESFQWMSRVLQAVDSIHQ 633 (1761)
Q Consensus 561 i~G~rIe~~eIE~~l~~~~~v~~~~~~~a~v~~~~~-~~~~~l~a~v~~~~~~~------~~~l~~~l~~~Lp~y~~P~~ 633 (1761)
++|+||+|.|||++|.+++.| .+|+|++.++ ..++.++|++++.++.. .++++++|+++||.||+|..
T Consensus 403 ~~G~~v~p~eIE~~l~~~p~V-----~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~ 477 (511)
T 3e7w_A 403 LHGYRMELEEIEFHVRQSQYV-----RSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRK 477 (511)
T ss_dssp ETTEEEEHHHHHHHHHHSTTE-----EEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSE
T ss_pred ECCEEeCHHHHHHHHHhCCCc-----ceEEEEEEcCCCCceEEEEEEEeccccccchhhHHHHHHHHHHhhCchhhCCee
Confidence 999999999999999999888 7999999874 46788999999876532 36799999999999999998
Q ss_pred eeeeEEEEeCCCCccCCCCCcccHHHHHHHHHc
Q psy14338 634 VGLYCLALVPPNYLPKTPLGGIHLSECKRRFLE 666 (1761)
Q Consensus 634 i~~~~v~~v~~~~lP~t~~GKidR~~L~~~~~~ 666 (1761)
+ +.+++||+|+||||||++|++.+.+
T Consensus 478 ~-------~~v~~lP~t~~GKi~R~~L~~~~~~ 503 (511)
T 3e7w_A 478 F-------IYQDHIQMTANGKIDRKRIGEEVLV 503 (511)
T ss_dssp E-------EECSCCCBCTTSCBCHHHHHHHHHH
T ss_pred E-------EEeccCCCCCCcCccHHHHHhHHhh
Confidence 6 5569999999999999999998865
No 15
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=2.3e-73 Score=745.66 Aligned_cols=486 Identities=16% Similarity=0.144 Sum_probs=393.4
Q ss_pred ccccccccccccccCCCCcCCCCCCCceEEccCCCCceeeCHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCHHHHH
Q psy14338 1160 LYARTGYLGFLRRTSPAGVAGAPVPPGVSSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLIC 1239 (1761)
Q Consensus 1160 ~~~~~~~~~~~~~~~~~~a~~~P~~~Av~~~d~~~~~~~lTY~eL~~~a~~lA~~L~~~~Gv~~gd~V~i~~~~s~~~iv 1239 (1761)
....++++.|.+++. ++||++|++ ++++++||+||+++++++|++|++. |+++||+|+|+++||+++++
T Consensus 24 ~~~~tl~~~~~~~a~-----~~Pd~~Av~-----~~~~~lTY~eL~~~a~~lA~~L~~~-Gv~~g~~V~i~~~~s~~~vv 92 (620)
T 4dg8_A 24 YAHPTVVARFSEMAA-----LHPHREAIR-----DRFGSVDYRQLLDSAEQLSDYLLEH-YPQPGVCLGVYGEYSRESIT 92 (620)
T ss_dssp GGSCCHHHHHHHHHH-----HCTTSEEEE-----ETTEEEEHHHHHHHHHHHHHHHHHH-CCSSCCEEEEESSSCHHHHH
T ss_pred CCCCCHHHHHHHHHH-----hCCCCeEEE-----cCCCcCcHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCCHHHHH
Confidence 345678888888876 779999999 6788999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHcCCEEEeCCCCCCCCccCChHHHHHHHHhcCCeEEEechhHHHHHhhhccccccccccCCccccCCCCccchh
Q psy14338 1240 AFYGCLYVGAVPVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDMPKKKL 1319 (1761)
Q Consensus 1240 a~lA~l~aG~~~vpldp~~P~~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1319 (1761)
++|||+|+|++||||||.+|.+ |+.+++++++++++|++........... ... ... . .....
T Consensus 93 a~lailkaGa~~vpld~~~p~~------~l~~il~~~~~~~vl~~~~~~~~~~~~~---~~~---~~~---~---~~~~~ 154 (620)
T 4dg8_A 93 CLLAILLSGHHYLYIDLKQPAA------WNAELCRQVDCRLILDCSTTPTPANGLP---CVP---VRH---L---PAAPA 154 (620)
T ss_dssp HHHHHHHTTCEEEECCTTSCHH------HHHHHHHHHTEEEEEECCSSCCCCTTSC---EEE---GGG---C---CCCCC
T ss_pred HHHHHHHhCCEEEeeCccChHH------HHHHHHHhCCCcEEEecCcccccccCCc---eee---ecc---C---CcCCc
Confidence 9999999999999999999988 9999999999999997653211100000 000 000 0 00001
Q ss_pred hhccCCCCCCCEEEEEeccCCCCCCceEEccHHHHHHHHHHHHHHcCcCCCCeEEEEeCCccChhHHHHHHHHhhcCceE
Q psy14338 1320 AALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHS 1399 (1761)
Q Consensus 1320 ~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~L~~G~~~ 1399 (1761)
........++++|||+|||||||+||||+++|+++.+.+.+ ...+++.+++++++++|++|+.++ +++|.+|++|+++
T Consensus 155 ~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~ 232 (620)
T 4dg8_A 155 SVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAAT-LEIWGALLNGGCC 232 (620)
T ss_dssp CSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEE
T ss_pred cccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHH-HHHHHHHhcCCEE
Confidence 11123456899999999999999999999999999888766 557789999999999999998887 6799999999999
Q ss_pred EEeCCCccccCHHHHHHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCCCCCcceEEEeecCCCChHHHHHHHHHH
Q psy14338 1400 ILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKL 1479 (1761)
Q Consensus 1400 vl~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~~l~~Lr~v~~gGe~l~~~~l~~~~~~~ 1479 (1761)
++.+.. .+++..+++.|+++++|+++++|++++.+++. ....+++||.+++|||++++ .+.+++.+.
T Consensus 233 v~~~~~--~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~----------~~~~l~~lr~v~~gGe~l~~-~~~~~~~~~ 299 (620)
T 4dg8_A 233 VLNDLG--PLDPGVLRQLIGERGADSAWLTASLFNTLVDL----------DPDCLGGLRQLLTGGDILSV-PHVRRALLR 299 (620)
T ss_dssp EECCSS--SCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHH----------CGGGGTTCSEEEEESSCCCH-HHHHHHHHH
T ss_pred EeCccc--cCCHHHHHHHHHHhCCcEEEccHHHHHHHHhc----------ChhhCCCccEEEEEeCcCCH-HHHHHHHHh
Confidence 997532 47999999999999999999999999999763 23457899999999999998 666666655
Q ss_pred HhhCCCCCccccccccccccceeeecCCCCCCCceeEecccccccCcceecccCCCCccceeccccccCCcEEEEEcCCC
Q psy14338 1480 FSALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLPGVKVIIANPET 1559 (1761)
Q Consensus 1480 ~~~~g~~e~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~ 1559 (1761)
+.. ..++|.||+||++.+++..... .. ......+++|+|++|++++|+|+++
T Consensus 300 ~~~-----~~l~n~YG~TE~~~~~~~~~~~---------~~--------------~~~~~~~~iG~p~~~~~~~i~d~~~ 351 (620)
T 4dg8_A 300 HPR-----LHLVNGYGPTENTTFTCCHVVT---------DD--------------DLEEDDIPIGKAIAGTAVLLLDEHG 351 (620)
T ss_dssp CTT-----CEEEEEECCGGGCSCSEEEECC---------TG--------------GGGSSSCCCBEECTTEEEEEECTTS
T ss_pred CCC-----eEEEeeEchhhhhhheEEEecc---------cc--------------ccCCCCCCceecccCcEEEEECccC
Confidence 432 6899999999987654321110 00 0011235699999999999999774
Q ss_pred CCCCCCCcceEEEEcCCcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEeccCCCCCCCCCCCCCCCccc
Q psy14338 1560 KGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLH 1639 (1761)
Q Consensus 1560 ~~~~p~G~~GEL~i~g~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~~~~~d~d~~~~~~g~G~~~ 1639 (1761)
..++|.|++|||||+|+++++|||| +|++|+++|+.+|+.+ ...|||||||+|++ ++| |+
T Consensus 352 ~~~~~~g~~GEl~i~G~~v~~GY~~---~p~~t~~~f~~~p~~~-~~~~~yrTGDl~~~------~~d--------G~-- 411 (620)
T 4dg8_A 352 QEIAEPDRAGEIVAFGAGLAQGYRN---DAARTRASFVELPYRG-RLLRAYRTGDRARY------DEQ--------GR-- 411 (620)
T ss_dssp CBCCSSSCCEEEEEEETTCCSEETT---CHHHHHHHEEEEEETT-EEEEEEEEEEEEEE------CTT--------SC--
T ss_pred CCCCCCCCceEEEEeccccccccCC---ChhhhhhhhccCCCCC-CCceEEeCCCEEEE------CCC--------Ce--
Confidence 4458999999999999999999999 9999999999988643 22389999999999 999 99
Q ss_pred ceEEEEcccCCeEEeCCeecChHHHHHHHHHhccCcceeEEEeeCC----eEEEEEEeCCCchhHhhHHHHHHHHHhhhc
Q psy14338 1640 DAVFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTN----LLVVVVELDGNESEALDLVPLVTNAVLEEH 1715 (1761)
Q Consensus 1640 ~~l~~~GR~dd~Iki~G~rI~~~eIE~~~l~~~p~V~~a~Vv~~~~----~~~a~v~~~~~~~~~~~l~~~l~~~~Lp~~ 1715 (1761)
|+|+||+|||||++|+||+|+|||+ +|.+||+|.+|+|++.++ .++++++.. .++++++++++ || .
T Consensus 412 --l~~~GR~dd~Ik~~G~ri~~~eIE~-~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~-----~~~~~~~l~~~-Lp-~ 481 (620)
T 4dg8_A 412 --LRFIGRGDGQVKLNGYRLDLPALEQ-RFRRQPGILDCALLVRERNGVKQLLCAWTGK-----ADASPQALLRQ-LP-T 481 (620)
T ss_dssp --EEEEECSSSEEEETTEEEEHHHHHH-HHHTSTTEEEEEEEEEEETTEEEEEEEEEEC-----TTCCCHHHHHH-SC-G
T ss_pred --EEEEccCCCEEEECCEEcCHHHHHH-HHHhCCCccEEEEEEEeCCCceEEEEEEecC-----hHHHHHHHHHh-Ch-h
Confidence 9999999999999999999999999 899999999999997532 344444432 23455677776 98 9
Q ss_pred CceeeEEEEECCCCccCCCchhhhHHHHHHHHHc
Q psy14338 1716 HLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 1749 (1761)
Q Consensus 1716 ~~vP~~i~~v~~~~lP~t~~GKvdR~~L~~~~~~ 1749 (1761)
||+|+.|++++ +||+|+||||||++|++.+.+
T Consensus 482 y~~P~~~~~v~--~lP~t~~GKidR~~L~~~~~~ 513 (620)
T 4dg8_A 482 WQRPHACVRVE--ALPLTAHGKLDRAALLRRLEE 513 (620)
T ss_dssp GGSCSEEEECS--SCCCC----CCHHHHHHHTCS
T ss_pred hcCCcEEEEEC--cCCCCcccCHhHHHHhhcccc
Confidence 99999999999 999999999999999987743
No 16
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=6.6e-74 Score=744.09 Aligned_cols=498 Identities=16% Similarity=0.167 Sum_probs=327.9
Q ss_pred chhHHHHHHHHhhhcCCCcEEEEECCCCceeEEEeHHHHHHHHHHHHHHhhcCCCCccccCCCCCCCEEEEEccCCCchh
Q psy14338 80 PRNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPIN 159 (1761)
Q Consensus 80 ~~~l~~~~~~~a~~~pd~~Av~~~d~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~~~~~~Gv~~g~~V~l~~~~s~~~~ 159 (1761)
..++.++|+++++++||++|+++.+ +++||+||+++++++|+.|+ +.|+++||+|+|+++|+ ++
T Consensus 29 ~~tl~~~l~~~a~~~p~~~Al~~~~------~~~Ty~eL~~~~~~lA~~L~--------~~Gv~~gd~V~i~~~n~--~~ 92 (544)
T 3o83_A 29 DQPLTRILTVGVQSHPHSLAIICGE------RQLSYIELDRLSTNLATRLA--------EKGLGKGDTALVQLPNV--AE 92 (544)
T ss_dssp CCCTTHHHHHHHHHCTTSEEEEETT------EEEEHHHHHHHHHHHHHHHH--------HTTCCTTCEEEECCCSS--HH
T ss_pred CCCHHHHHHHHHHhCCCceEEEcCC------CceeHHHHHHHHHHHHHHHH--------HCCCCCCCEEEEECCCC--HH
Confidence 3679999999999999999999765 79999999999999999999 89999999999999999 99
Q ss_pred HHHHHHHHHHhCCeEEecCCCCCcCccchhHHHHHHhcCCCcEEEEcccccccCc-----cc---c--cccceeccCCCc
Q psy14338 160 FLCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLP-----KT---A--AGEVVAFKGWPK 229 (1761)
Q Consensus 160 ~vva~lAvlkaG~~~vpldp~~p~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~-----~~---~--~~~~~~~~~~~~ 229 (1761)
+++++|||+|+|+++||++|.++.+ |+.+++++++++++|++........ .. . ...++......
T Consensus 93 ~~~~~lA~~~~Gav~vpl~~~~~~~-----~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 166 (544)
T 3o83_A 93 FYIVFFALLKAGVVVLNALYSHRQY-----ELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQA- 166 (544)
T ss_dssp HHHHHHHHHHHTCEEEECCTTCCHH-----HHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCT-
T ss_pred HHHHHHHHHHhCcEEecCCCCCCHH-----HHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCc-
Confidence 9999999999999999999999976 8999999999999999876431100 00 0 00011111000
Q ss_pred ceeEEeccccCCCCCCCCCCCCCCCCcEEEEecCCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCCeEEEccCCcchhh
Q psy14338 230 LTWFVTEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFKRETG 309 (1761)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 309 (1761)
......+................++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++++|++|.++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 246 (544)
T 3o83_A 167 TDFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFM 246 (544)
T ss_dssp TSEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHH
T ss_pred cccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEee
Confidence 00000001111111111224457899999999999999999999999999999999999999999999999999999887
Q ss_pred hHH-HHHHHHhcCcEEEEeCCccccCCHHHHHHHHHhcCceEEEecCHHHHHHhhcCCCCCCCCCCceeEEEecCCCccC
Q psy14338 310 LWH-SVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGANPW 388 (1761)
Q Consensus 310 ~~~-~i~~~L~~G~~lvi~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~~ll~~~~~~~~~l~~Lr~v~~gg~Ge~l 388 (1761)
+.. .++.+|..|+++++.+ .+++..+++.|+++++|++.++| +++..++........++++||.+++| |+++
T Consensus 247 ~~~~~~~~~l~~G~~~v~~~----~~~~~~~~~~i~~~~~t~~~~~P-~~~~~l~~~~~~~~~~~~~lr~i~~g--G~~l 319 (544)
T 3o83_A 247 LSSPGALGVLHAGGCVVMAP----NPEPLNCFSIIQRHQVNMASLVP-SAVIMWLEKAAQYKDQIQSLKLLQVG--GASF 319 (544)
T ss_dssp HHSSHHHHHHHTTCEEEECS----SCCHHHHHHHHHHHTCCEEEECH-HHHHHHHHHHTTTHHHHTTCCEEEEE--SSCC
T ss_pred cchHHHHHHHHcCCEEEECC----CCCHHHHHHHHHHHCCCEEEech-HHHHHHHhchhhccccCCcceEEEEc--CCCC
Confidence 753 4899999999999998 67999999999999999999996 47777776655445568899999999 9999
Q ss_pred CHHHHHHHHHHhhhCCCCCCccccccccccccceEeecCCCCCcccCCCccccccCcccceeeecCCCccCcccccccCC
Q psy14338 389 SLSSCDQFLSVFQSKGLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQ 468 (1761)
Q Consensus 389 ~~~~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~ 468 (1761)
++++.++|.+.+ |. .++|.||+||+++.++.... .......++|+
T Consensus 320 ~~~~~~~~~~~~---~~---~~~~~YG~TE~~~~~~~~~~-----------------------------~~~~~~~~~G~ 364 (544)
T 3o83_A 320 PESLARQVPEVL---NC---KLQQVFGMAEGLVNYTRLDD-----------------------------SDEQIFTTQGR 364 (544)
T ss_dssp CHHHHTHHHHHH---CS---EEEEEEECTTSCEEECCTTS-----------------------------CHHHHHHCCCE
T ss_pred CHHHHHHHHHHh---CC---cEEeeeccccccceeecCCC-----------------------------chhhccCCCce
Confidence 999999999988 44 39999999999865442211 01234578999
Q ss_pred CC-CCcEEEEEeCCCCcccCCCCCceEEEEecCCccccccCCCccccccccccccccCCCccCCCceEeecceEEEeCCC
Q psy14338 469 VM-PGCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGFLGPGG 547 (1761)
Q Consensus 469 p~-~~~~~~I~d~~~~~~~~p~G~~GEL~i~G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~~~~dG 547 (1761)
|+ ++++++|+|++++ ++|.|++|||+|+|+++++||||+|+.|+++|. .++||||||+|++++||
T Consensus 365 p~~~~~~~~i~d~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~------------~~g~~~TGDlg~~~~dG 430 (544)
T 3o83_A 365 PISSDDEIKIVDEQYR--EVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFD------------EDNYYYSGDLVQRTPDG 430 (544)
T ss_dssp ESCTTCEEEEECTTSC--BCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBC------------TTCCEEEEEEEEECTTS
T ss_pred ecCCCcEEEEECCCCC--CCCCCCeeEEEEecCCcchhhcCChhhhhhhCC------------CCCCeEcCCEEEEcCCC
Confidence 97 8999999999887 599999999999999999999999999999994 47999999999999999
Q ss_pred eEEEEeccCCeEEECCcccChHHHHHHHHhcCCccccccceEEEEEEecC-CCceEEEEEEeCCC-CCHHHHHHHHHH-H
Q psy14338 548 LVFVCGSRDGLMTVTGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIRVL-RDERICVIAEQRPD-CSEEESFQWMSR-V 624 (1761)
Q Consensus 548 ~l~~~GR~d~qvki~G~rIe~~eIE~~l~~~~~v~~~~~~~a~v~~~~~~-~~~~l~a~v~~~~~-~~~~~l~~~l~~-~ 624 (1761)
+|+|+||+|||||++|+||+|.|||++|.+++.| .+|+|++.++. .++.++|+++..+. .+.+++++++++ .
T Consensus 431 ~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V-----~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~l~~~~~~~~ 505 (544)
T 3o83_A 431 NLRVVGRIKDQINRGGEKIASEEIEKLILLHPEV-----MHAALVAIVDEQFGEKSCAFIVSRNPELKAVVLRRHLMELG 505 (544)
T ss_dssp CEEEEEEEC-----------------------------------------------------------------------
T ss_pred CEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCc-----cEEEEEeccCCCCCceEEEEEEeCCCCCCHHHHHHHHHhCC
Confidence 9999999999999999999999999999999888 69999998854 67889999887653 567889999998 7
Q ss_pred HHHhhhcceeeeeEEEEeCCCCccCCCCCcccHHHHHHHHHcC
Q psy14338 625 LQAVDSIHQVGLYCLALVPPNYLPKTPLGGIHLSECKRRFLEG 667 (1761)
Q Consensus 625 Lp~y~~P~~i~~~~v~~v~~~~lP~t~~GKidR~~L~~~~~~~ 667 (1761)
||.||+|..+ +.+++||+|+||||||++|++.+...
T Consensus 506 l~~~~~P~~i-------~~v~~lP~t~~GKi~r~~L~~~~~~~ 541 (544)
T 3o83_A 506 IAQYKLPDQI-------KLIESLPLTAVGKVDKKQLRSILNTS 541 (544)
T ss_dssp -------------------------------------------
T ss_pred CCcccCCcEE-------EEeccCCCCCCCCCcHHHHHHHHhhc
Confidence 9999999986 55699999999999999999987653
No 17
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1e-72 Score=728.87 Aligned_cols=498 Identities=15% Similarity=0.209 Sum_probs=414.2
Q ss_pred hHHHHHHHHhhhcCCCcEEEEECCCCceeEEEeHHHHHHHHHHHHHHhhcCCCCccccCCCCCCCEEEEEccCCCchhHH
Q psy14338 82 NLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFL 161 (1761)
Q Consensus 82 ~l~~~~~~~a~~~pd~~Av~~~d~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~~~~~~Gv~~g~~V~l~~~~s~~~~~v 161 (1761)
++.++|+++|+++||++|+++.+ +++||+||+++++++|++|+ +.|+++|++|+++++|+ ++++
T Consensus 2 ~l~~~l~~~a~~~p~~~A~~~~~------~~~Ty~el~~~~~~lA~~L~--------~~g~~~gd~V~i~~~n~--~e~~ 65 (512)
T 3fce_A 2 KLLEQIEKWAAETPDQTAFVWRD------AKITYKQLKEDSDALAHWIS--------SEYPDDRSPIMVYGHMQ--PEMI 65 (512)
T ss_dssp CHHHHHHHHHHHSTTSEEEEETT------EEEEHHHHHHHHHHHHHHHH--------HHSTTCCCCEEEEESSC--HHHH
T ss_pred cHHHHHHHHHHHCCCceEEEeCC------ceEEHHHHHHHHHHHHHHHH--------HhCCCCCCEEEEEeCCC--HHHH
Confidence 58899999999999999999866 69999999999999999999 88999999999999999 9999
Q ss_pred HHHHHHHHhCCeEEecCCCCCcCccchhHHHHHHhcCCCcEEEEcccccccCcccccccceeccCCCcceeEEeccccCC
Q psy14338 162 CAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKLTWFVTEHLAKT 241 (1761)
Q Consensus 162 va~lAvlkaG~~~vpldp~~p~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1761)
+++|||+++|+++||++|.++.+ |+.+++++++++++|++......... ..++.... .. .......
T Consensus 66 ~~~la~~~~G~v~vpl~~~~~~~-----~l~~il~~~~~~~~i~~~~~~~~~~~---~~~~~~~~---~~---~~~~~~~ 131 (512)
T 3fce_A 66 INFLGCVKAGHAYIPVDLSIPAD-----RVQRIAENSGAKLLLSATAVTVTDLP---VRIVSEDN---LK---DIFFTHK 131 (512)
T ss_dssp HHHHHHHHTTCCEEEEETTSCHH-----HHHHHHHHSCCCEEEESSCCCSSCCS---SEEEETHH---HH---HHHHHTT
T ss_pred HHHHHHHHhCCEEEeeCCCCcHH-----HHHHHHHhcCCCEEEecCcccccccc---cceechhh---hh---hhccccc
Confidence 99999999999999999999976 99999999999999998553221100 00000000 00 0000011
Q ss_pred CCCCCCCCCCCCCCcEEEEecCCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCCeEEEccCCcchhhhHHHHHHHHhcC
Q psy14338 242 PKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFKRETGLWHSVLTSVLNG 321 (1761)
Q Consensus 242 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~i~~~L~~G 321 (1761)
.....+.....++++|||+|||||||.||||+++|+++.+.+.+....++++++|++++++|++|+.+++. ++.+|+.|
T Consensus 132 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G 210 (512)
T 3fce_A 132 GNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMD-IYPSLVTG 210 (512)
T ss_dssp TCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHH-HHHHHHTT
T ss_pred ccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHH-HHHHHhCC
Confidence 11112233457899999999999999999999999999999999999999999999999999999999985 99999999
Q ss_pred cEEEEeCCccccCCHHHHHHHHHhcCceEEEecCHHHHHHhhcCCCCCCCCCCceeEEEecCCCccCCHHHHHHHHHHhh
Q psy14338 322 MHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGANPWSLSSCDQFLSVFQ 401 (1761)
Q Consensus 322 ~~lvi~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~~ll~~~~~~~~~l~~Lr~v~~gg~Ge~l~~~~~~~~~~~~~ 401 (1761)
+++++.+... .+++..+++.|+++++|++.++| +++..++........++++||.+++| |+++++++.++|.+.++
T Consensus 211 ~~~~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P-~~~~~l~~~~~~~~~~~~~lr~~~~~--G~~l~~~~~~~~~~~~~ 286 (512)
T 3fce_A 211 GTLWAIDKDM-IARPKDLFASLEQSDIQVWTSTP-SFAEMCLMEASFSESMLPNMKTFLFC--GEVLPNEVARKLIERFP 286 (512)
T ss_dssp CEEEECCHHH-HHSHHHHHHHHHHHCCCEEEECH-HHHHHHTTSTTCSTTTSTTCCEEEEC--SSCCCHHHHHHHHHHCT
T ss_pred CEEEECCHHH-hhCHHHHHHHHHHcCCcEEEecH-HHHHHHHhhccccchhCccccEEEEe--cCcCCHHHHHHHHHHCC
Confidence 9999998422 37899999999999999999996 58888877766667788999999999 99999999999999985
Q ss_pred hCCCCCCccccccccccccceEeecCCCCCcccCCCccccccCcccceeeecCCCccCcccccccCCCCCCcEEEEEeCC
Q psy14338 402 SKGLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQVMPGCIMTVVKMD 481 (1761)
Q Consensus 402 ~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~I~d~~ 481 (1761)
.. .++|.||+||++++++..... ..........++|+|+++++++|+|++
T Consensus 287 ~~-----~i~~~YG~TE~~~~~~~~~~~-------------------------~~~~~~~~~~~~G~~~~~~~~~i~d~~ 336 (512)
T 3fce_A 287 KA-----TIMNTYGPTEATVAVTGIHVT-------------------------EEVLDQYKSLPVGYCKSDCRLLIMKED 336 (512)
T ss_dssp TC-----EEEEEECCGGGSSCSEEEECC-------------------------HHHHHHCSSCCCEEECTTCEEEEECSS
T ss_pred CC-----EEEeCcccChhhhheeeEEec-------------------------cccccccCCCccccccCCcEEEEECCC
Confidence 32 499999999998765432211 000011235689999999999999999
Q ss_pred CCcccCCCCCceEEEEecCCccccccCCCccccccccccccccCCCccCCCceEeecceEEEeCCCeEEEEeccCCeEEE
Q psy14338 482 SPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGFLGPGGLVFVCGSRDGLMTV 561 (1761)
Q Consensus 482 ~~~~~~p~G~~GEL~i~G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki 561 (1761)
++ ++|.|++|||+|+||++++||||+|++|+++|... +++|||||||+|++ +||+|+|+||+|||||+
T Consensus 337 g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~---------~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~ 404 (512)
T 3fce_A 337 GT--IAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMI---------DGERAYKTGDAGYV-ENGLLFYNGRLDFQIKL 404 (512)
T ss_dssp SC--BCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEE---------TTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEE
T ss_pred CC--CCCCCCeEEEEEeccccChhhcCCchhhhhccccC---------CCCEEEeCCceEEe-cCCEEEEecccCCEEEE
Confidence 87 59999999999999999999999999999999521 24789999999999 79999999999999999
Q ss_pred CCcccChHHHHHHHHhcCCccccccceEEEEEEec-CCCceEEEEEEeCCCCC------HHHHHHHHHHHHHHhhhccee
Q psy14338 562 TGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIRV-LRDERICVIAEQRPDCS------EEESFQWMSRVLQAVDSIHQV 634 (1761)
Q Consensus 562 ~G~rIe~~eIE~~l~~~~~v~~~~~~~a~v~~~~~-~~~~~l~a~v~~~~~~~------~~~l~~~l~~~Lp~y~~P~~i 634 (1761)
+|+||+|.|||+.|.+++.| .+|+|++.++ ..++.++|++++.+... .++++++|+++||.||+|..+
T Consensus 405 ~G~~v~p~eIE~~l~~~p~V-----~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~ 479 (512)
T 3fce_A 405 HGYRMELEEIEHHLRACSYV-----EGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKF 479 (512)
T ss_dssp TTEEECHHHHHHHHHHSTTE-----EEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGGGSCSEE
T ss_pred CCEEECHHHHHHHHHhCCCc-----ceEEEEEEecCCCceEEEEEEecCCccccchhhhHHHHHHHHHhhCchhcCCeEE
Confidence 99999999999999999888 7999999885 46678999999876532 357899999999999999986
Q ss_pred eeeEEEEeCCCCccCCCCCcccHHHHHHHHHcCC
Q psy14338 635 GLYCLALVPPNYLPKTPLGGIHLSECKRRFLEGN 668 (1761)
Q Consensus 635 ~~~~v~~v~~~~lP~t~~GKidR~~L~~~~~~~~ 668 (1761)
+.+++||+|+||||||++|++.+.+.+
T Consensus 480 -------~~~~~lP~t~~GKi~R~~L~~~~~~~~ 506 (512)
T 3fce_A 480 -------MYQSSIPMTPNGKVDRKKLLSEVTALE 506 (512)
T ss_dssp -------EECSCCCBCTTSSBCHHHHHHHHHC--
T ss_pred -------EEecccCCCCCcChHHHHHHhhhhhcc
Confidence 556999999999999999999987654
No 18
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=3.9e-72 Score=729.71 Aligned_cols=499 Identities=14% Similarity=0.148 Sum_probs=411.8
Q ss_pred hhHHHHHHHHhhh-----cCCCcEEEEECCCCceeEEEeHHHHHHHHHHHHHHhhcCCCCccccC-CCCCCCEEEEEccC
Q psy14338 81 RNLEAAIQRYGSA-----TYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSES-SLKSGDRIALVYPN 154 (1761)
Q Consensus 81 ~~l~~~~~~~a~~-----~pd~~Av~~~d~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~~~~~~-Gv~~g~~V~l~~~~ 154 (1761)
.+++++|++++++ +||++|+++.+.+|.. +++||+||+++++++|+.|+ +. |+++||+|+|+++|
T Consensus 38 ~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~-~~~Ty~el~~~~~~lA~~L~--------~~~Gv~~gd~V~i~~~n 108 (570)
T 3c5e_A 38 NFASDVLDHWADMEKAGKRPPSPALWWVNGKGKE-LMWNFRELSENSQQAANVLS--------GACGLQRGDRVAVVLPR 108 (570)
T ss_dssp CHHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCE-EEEEHHHHHHHHHHHHHHHH--------TTTCCCTTCEEEEECCS
T ss_pred cHHHHHHHHHHhhccccCCCCceEEEEEcCCCce-eEEeHHHHHHHHHHHHHHHH--------HccCCCCCCEEEEEcCC
Confidence 4678999999998 9999999987543321 68999999999999999999 77 99999999999999
Q ss_pred CCchhHHHHHHHHHHhCCeEEecCCCCCcCccchhHHHHHHhcCCCcEEEEcccccccCccccc-----ccceeccCCCc
Q psy14338 155 NDPINFLCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAA-----GEVVAFKGWPK 229 (1761)
Q Consensus 155 s~~~~~vva~lAvlkaG~~~vpldp~~p~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~-----~~~~~~~~~~~ 229 (1761)
+ +++++++|||+|+|+++||+||.++.+ |+.+++++++++++|+++...+.+..... ..++.......
T Consensus 109 ~--~e~~~~~lA~~~~Ga~~vpl~~~~~~~-----~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (570)
T 3c5e_A 109 V--PEWWLVILGCIRAGLIFMPGTIQMKST-----DILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSC 181 (570)
T ss_dssp C--HHHHHHHHHHHHHTCEEEECCTTCCHH-----HHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCC
T ss_pred C--HHHHHHHHHHHHcCeEEEecCCCCCHH-----HHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCc
Confidence 9 999999999999999999999999976 89999999999999998875443322110 01111111000
Q ss_pred ceeEE-eccccCCCCCCCCCCCCCCCCcEEEEecCCCCCCceEEEEchHHHHH-HHHHHHHHcCCCCCCeEEEccCCcch
Q psy14338 230 LTWFV-TEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLS-HCRALTQACHYTEGENMVCVLDFKRE 307 (1761)
Q Consensus 230 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~-~~~~~~~~~~~~~~d~~l~~~~~~~~ 307 (1761)
..+.. .+...... ...+.....++|+|||+|||||||+||||+++|+.+.+ ..... ..++++++|++++++|++|+
T Consensus 182 ~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~ 259 (570)
T 3c5e_A 182 DGWLNFKKLLNEAS-TTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-GWTGLQASDIMWTISDTGWI 259 (570)
T ss_dssp TTSEEHHHHHHHSC-SCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-TTTSCCTTCEEEECCCTTSH
T ss_pred cccccHHHHhhccc-ccccccCCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-hhcCCCCCceEEEcCchHHH
Confidence 00000 01111111 11122345789999999999999999999999994432 34444 66789999999999999999
Q ss_pred hhhHHHHHHHHhcCcEEEEeCCccccCCHHHHHHHHHhcCceEEEecCHHHHHHhhcCCCCCCCCCCceeEEEecCCCcc
Q psy14338 308 TGLWHSVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGANP 387 (1761)
Q Consensus 308 ~~~~~~i~~~L~~G~~lvi~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~~ll~~~~~~~~~l~~Lr~v~~gg~Ge~ 387 (1761)
.+++..++.+|..|+++++.+.. .+++..+++.|+++++|+++++| +++..++... ....++++||.+++| |++
T Consensus 260 ~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P-~~~~~l~~~~-~~~~~~~~lr~i~~g--Ge~ 333 (570)
T 3c5e_A 260 LNILCSLMEPWALGACTFVHLLP--KFDPLVILKTLSSYPIKSMMGAP-IVYRMLLQQD-LSSYKFPHLQNCVTV--GES 333 (570)
T ss_dssp HHHHHTTHHHHHHTCEEEEECCS--SCCHHHHHHHHHHSCCCEEEECH-HHHHHHHTSC-TTTCCCTTCCEEEEE--SSC
T ss_pred HHHHHHHHHHHHhCceEEEecCC--CCCHHHHHHHHHHhCCeEEeccH-HHHHHHHhcc-ccccccccceEEEEc--CCc
Confidence 99875589999999999998742 57999999999999999999996 5777777652 334568999999999 999
Q ss_pred CCHHHHHHHHHHhhhCCCCCCccccccccccccceEeecCCCCCcccCCCccccccCcccceeeecCCCccCcccccccC
Q psy14338 388 WSLSSCDQFLSVFQSKGLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCG 467 (1761)
Q Consensus 388 l~~~~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG 467 (1761)
+++++.++|.+.+ |++ ++|.||+||++++++..+.. .....++|
T Consensus 334 l~~~~~~~~~~~~---g~~---i~~~YG~TE~~~~~~~~~~~------------------------------~~~~~~vG 377 (570)
T 3c5e_A 334 LLPETLENWRAQT---GLD---IRESYGQTETGLTCMVSKTM------------------------------KIKPGYMG 377 (570)
T ss_dssp CCHHHHHHHHHHH---SCC---CEEEEEETTTEEEEECCTTS------------------------------CCCTTCCC
T ss_pred CCHHHHHHHHHHh---CCc---hhhccchhhcccceecCccc------------------------------ccCCCccc
Confidence 9999999999988 554 99999999998766543311 12356899
Q ss_pred CCCCCcEEEEEeCCCCcccCCCCCceEEEEe-----cCCccccccCCCccccccccccccccCCCccCCCceEeecceEE
Q psy14338 468 QVMPGCIMTVVKMDSPSYLCKTDEVGEICVA-----STGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGF 542 (1761)
Q Consensus 468 ~p~~~~~~~I~d~~~~~~~~p~G~~GEL~i~-----G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~ 542 (1761)
+|+++++++|+|++++ ++|.|++|||+|+ |+++++||||+|+.|+++|. ++||||||+|+
T Consensus 378 ~p~~~~~v~i~d~~g~--~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~-------------~~~~~TGDlg~ 442 (570)
T 3c5e_A 378 TAASCYDVQIIDDKGN--VLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIR-------------GDFWLLGDRGI 442 (570)
T ss_dssp EECTTCCEEEECTTSC--BCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEE-------------TTEEEEEEEEE
T ss_pred ccCCCceEEEECCCCC--CCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhc-------------CCccccceeEE
Confidence 9999999999999987 5999999999999 99999999999999999995 78999999999
Q ss_pred EeCCCeEEEEeccCCeEEECCcccChHHHHHHHHhcCCccccccceEEEEEEecC-CCceEEEEEEeCCCC-------CH
Q psy14338 543 LGPGGLVFVCGSRDGLMTVTGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIRVL-RDERICVIAEQRPDC-------SE 614 (1761)
Q Consensus 543 ~~~dG~l~~~GR~d~qvki~G~rIe~~eIE~~l~~~~~v~~~~~~~a~v~~~~~~-~~~~l~a~v~~~~~~-------~~ 614 (1761)
+|+||+|+|+||+|||||++|+||+|.|||++|.+++.| .+|+|++.++. .++.++|+|+..++. ..
T Consensus 443 ~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V-----~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~ 517 (570)
T 3c5e_A 443 KDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAV-----VETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLT 517 (570)
T ss_dssp ECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTE-----EEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHH
T ss_pred EcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCc-----ceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHH
Confidence 999999999999999999999999999999999998888 79999999864 678899999976542 25
Q ss_pred HHHHHHHHHHHHHhhhcceeeeeEEEEeCCCCccCCCCCcccHHHHHHHHHc
Q psy14338 615 EESFQWMSRVLQAVDSIHQVGLYCLALVPPNYLPKTPLGGIHLSECKRRFLE 666 (1761)
Q Consensus 615 ~~l~~~l~~~Lp~y~~P~~i~~~~v~~v~~~~lP~t~~GKidR~~L~~~~~~ 666 (1761)
++++++|+++||.||+|..+ +.+++||+|+|||+||++|++.+..
T Consensus 518 ~~l~~~l~~~L~~~~~P~~i-------~~v~~lP~t~~GKi~R~~L~~~~~~ 562 (570)
T 3c5e_A 518 KELQQHVKSVTAPYKYPRKI-------EFVLNLPKTVTGKIQRAKLRDKEWK 562 (570)
T ss_dssp HHHHHHHHHHSCGGGSCSEE-------EEESCCCBCTTCCBCHHHHHHHHTC
T ss_pred HHHHHHHHhhCccccCCcEE-------EEeccCCCCCCcCCcHHHHHHHHHh
Confidence 68999999999999999986 3459999999999999999998753
No 19
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=4.7e-73 Score=731.50 Aligned_cols=488 Identities=18% Similarity=0.226 Sum_probs=322.4
Q ss_pred chhHHHHHHHHhhhcCCCcEEEEECCCCceeEEEeHHHHHHHHHHHHHHhhcCCCCccccCCCCCCCEEEEEccCCCchh
Q psy14338 80 PRNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPIN 159 (1761)
Q Consensus 80 ~~~l~~~~~~~a~~~pd~~Av~~~d~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~~~~~~Gv~~g~~V~l~~~~s~~~~ 159 (1761)
+.+++++|+++|+++||++|+++.+ +++||+||+++++++|+.|+ +.|+++||+|+|+++|+ ++
T Consensus 5 ~~tl~~~l~~~a~~~pd~~Al~~~~------~~~Ty~eL~~~~~~lA~~L~--------~~Gv~~gd~V~i~~~~~--~~ 68 (509)
T 3ivr_A 5 DFTLADVYRRNAALFPDRTAFMVDG------VRLTHRDYLARAERLASGLL--------RDGVHTGDRVAILSQNC--SE 68 (509)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEETT------EEEEHHHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCSC--HH
T ss_pred cCCHHHHHHHHHHHCCCceEEEECC------cEEcHHHHHHHHHHHHHHHH--------HcCCCCCCEEEEEcCCC--HH
Confidence 4689999999999999999999855 79999999999999999999 88999999999999999 99
Q ss_pred HHHHHHHHHHhCCeEEecCCCCCcCccchhHHHHHHhcCCCcEEEEcccccccCccc----cc-ccceeccCCCcceeEE
Q psy14338 160 FLCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKT----AA-GEVVAFKGWPKLTWFV 234 (1761)
Q Consensus 160 ~vva~lAvlkaG~~~vpldp~~p~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~ 234 (1761)
+++++|||+|+|+++||+||.+|.+ |+.+++++++++++|++......+... .. ..++.... ....+
T Consensus 69 ~~~~~lA~~~~Ga~~vpl~~~~~~~-----~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-- 140 (509)
T 3ivr_A 69 MIELIGAVALIGAILLPVNYRLNAD-----EIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGD-GSGPF-- 140 (509)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHH-----HHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSC-CCSSC--
T ss_pred HHHHHHHHHHhCCEEEecCCCCCHH-----HHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCC-CCcCh--
Confidence 9999999999999999999999976 999999999999999998754431111 00 01111111 00011
Q ss_pred eccccCCCCCCCCCCCCCCCCcEEEEecCCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCCeEEEccCCcchhhhHHHH
Q psy14338 235 TEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFKRETGLWHSV 314 (1761)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~i 314 (1761)
.+................++|+|||+|||||||+||||+++|+++++.+.+....++++++|++++++|++|++++.. +
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~ 219 (509)
T 3ivr_A 141 APFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGL-M 219 (509)
T ss_dssp EEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHH-H
T ss_pred hhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHH-H
Confidence 111110111222334568899999999999999999999999999999999999999999999999999999999986 7
Q ss_pred HHHHhcCcEEEEeCCccccCCHHHHHHHHHhcCceEEEecCHHHHHHhhcCCCCCCCCCCceeEEEecCCCccCCHHHHH
Q psy14338 315 LTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGANPWSLSSCD 394 (1761)
Q Consensus 315 ~~~L~~G~~lvi~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~~ll~~~~~~~~~l~~Lr~v~~gg~Ge~l~~~~~~ 394 (1761)
+.+++.|++.++.. .+++..+++.|+++++|++..+|+ ++..++... ...++++||.++.| |++ +..+
T Consensus 220 ~~~~~~~g~~~~~~----~~~~~~~~~~i~~~~~t~~~~~p~-~~~~l~~~~--~~~~l~~lr~~~~~--g~~---~~~~ 287 (509)
T 3ivr_A 220 LTLQQAGGASVIAA----KFDPAQAARDIEAHKVTVMAEFAP-MLGNILDQA--APAQLASLRAVTGL--DTP---ETIE 287 (509)
T ss_dssp HHHHHHTCEEEECS----SCCHHHHHHHHHHHTCCEEEEETT-HHHHHHHHC--CGGGGTTCCEEEEE--CCH---HHHH
T ss_pred HHHHHhCCcEEEec----ccCHHHHHHHHHHHCCcEEEecHH-HHHHHHhcc--cccchhhhheeccc--CCh---HHHH
Confidence 77777788888776 679999999999999999999975 777777654 34567899999998 776 8888
Q ss_pred HHHHHhhhCCCCCCccccccccccccceEeecCCCCCcccCCCccccccCcccceeeecCCCccCcccccccCCCCCCcE
Q psy14338 395 QFLSVFQSKGLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQVMPGCI 474 (1761)
Q Consensus 395 ~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~ 474 (1761)
+|.+.++. . .++|.||+||++.+++..+.. ....++|+|++|++
T Consensus 288 ~~~~~~~~--~---~~~~~YG~TE~~~~~~~~~~~-------------------------------~~~~~~G~p~~~~~ 331 (509)
T 3ivr_A 288 RFEATCPN--A---TFWATFGQSETSGLSTFAPYR-------------------------------DRPKSAGRPLFWRT 331 (509)
T ss_dssp HHHHHCTT--C---EEEEEEEEGGGTEEEEEEEGG-------------------------------GSTTSCCEECTTCE
T ss_pred HHHHhcCC--C---eEEcccCccccccccccCccc-------------------------------cCCCcccccCCCcE
Confidence 89888753 2 599999999999776644311 11345999999999
Q ss_pred EEEEeCCCCcccCCCCCceEEEEecCCccccccCCCccccccccccccccCCCccCCCceEeecceEEEeCCCeEEEEec
Q psy14338 475 MTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGFLGPGGLVFVCGS 554 (1761)
Q Consensus 475 ~~I~d~~~~~~~~p~G~~GEL~i~G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~~~~dG~l~~~GR 554 (1761)
++|+|++++ ++|.|++|||+|+|+++++||||+|++|+++|. +|||||||+|++++||+|+|+||
T Consensus 332 ~~i~d~~~~--~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~-------------~g~~~TGDl~~~~~dG~l~~~GR 396 (509)
T 3ivr_A 332 VAVVDAEDR--PLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR-------------NGWHHTGDMGRFDADGYLFYAGR 396 (509)
T ss_dssp EEEECTTSC--BCCTTCCEEEEEESTTSCCEETTCHHHHHHHTG-------------GGSEEEEEEEEECTTSCEEEEEE
T ss_pred EEEECCCCC--CCCCCCceEEEEecCCccccccCCHHHhHHHhh-------------cCCcccccEEEECCCceEEEeCC
Confidence 999999987 699999999999999999999999999999995 78999999999999999999999
Q ss_pred c--CCeEEECCcccChHHHHHHHHhcCCccccccceEEEEEEecC-CCceEEEEEEeCCC--CCHHHHHHHHHHHHHHhh
Q psy14338 555 R--DGLMTVTGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIRVL-RDERICVIAEQRPD--CSEEESFQWMSRVLQAVD 629 (1761)
Q Consensus 555 ~--d~qvki~G~rIe~~eIE~~l~~~~~v~~~~~~~a~v~~~~~~-~~~~l~a~v~~~~~--~~~~~l~~~l~~~Lp~y~ 629 (1761)
+ ||+||++|+||+|.|||++|.+++.| .+|+|++.++. .++.++++++..++ .+.++++++|+++||.||
T Consensus 397 ~d~~d~ik~~G~~v~p~eiE~~l~~~p~V-----~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~ 471 (509)
T 3ivr_A 397 APEKELIKTGGENVYPAEVEGALKQHPAI-----ADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASLIARYK 471 (509)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred CCcceeEEECCEEECHHHHHHHHHhCCCc-----eeEEEEeccccccCcEEEEEEEeCCCCCCCHHHHHHHHHhhCcccC
Confidence 9 99999999999999999999999888 79999999854 57889999887654 677899999999999999
Q ss_pred hcceeeeeEEEEeCCCCccCCCCCcccHHHHHHHHHcC
Q psy14338 630 SIHQVGLYCLALVPPNYLPKTPLGGIHLSECKRRFLEG 667 (1761)
Q Consensus 630 ~P~~i~~~~v~~v~~~~lP~t~~GKidR~~L~~~~~~~ 667 (1761)
+|+.+ +.+++||+|+||||||++|++.+.+.
T Consensus 472 ~P~~i-------~~v~~lP~t~~GKidr~~Lr~~~~~~ 502 (509)
T 3ivr_A 472 KPKHV-------VFVEALPKDAKGAIDRAAVKTAHGQE 502 (509)
T ss_dssp --------------------------------------
T ss_pred CCcEE-------EEecCCCCCCCCCccHHHHHHHHhhc
Confidence 99986 55699999999999999999987653
No 20
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=5.1e-72 Score=726.43 Aligned_cols=497 Identities=15% Similarity=0.200 Sum_probs=413.2
Q ss_pred hhHHH-HHHHHhhhcCCCcEEEEECCCCceeEEEeHHHHHHHHHHHHHHhhcCCCCccccCCCCCCCEEEEEccCCCchh
Q psy14338 81 RNLEA-AIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPIN 159 (1761)
Q Consensus 81 ~~l~~-~~~~~a~~~pd~~Av~~~d~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~~~~~~Gv~~g~~V~l~~~~s~~~~ 159 (1761)
.++.+ +|.++++++ +++|+++.+. + +++||+||+++++++|+.|+ +.|+++||+|+|+++|+ ++
T Consensus 25 ~~l~~~~l~~~~~~~-~~~A~~~~~~-~---~~~Ty~el~~~~~~lA~~L~--------~~Gv~~gd~V~i~~~n~--~e 89 (548)
T 2d1s_A 25 AGTQLRKYMERYAKL-GAIAFTNAVT-G---VDYSYAEYLEKSCCLGKALQ--------NYGLVVDGRIALCSENC--EE 89 (548)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEEETTT-C---CEEEHHHHHHHHHHHHHHHH--------HHTCCTTCEEEEECSSC--TT
T ss_pred CcHHHHHHHhhhccc-CCceEEEcCC-C---CEeeHHHHHHHHHHHHHHHH--------HcCCCCCCEEEEEeCCc--hh
Confidence 58999 899999999 9999986421 2 58999999999999999999 88999999999999999 99
Q ss_pred HHHHHHHHHHhCCeEEecCCCCCcCccchhHHHHHHhcCCCcEEEEcccccccCcccc-----cccceeccCCCc-ceeE
Q psy14338 160 FLCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTA-----AGEVVAFKGWPK-LTWF 233 (1761)
Q Consensus 160 ~vva~lAvlkaG~~~vpldp~~p~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~ 233 (1761)
+++++|||+++|+++||++|.++.+ |+.+++++++++++|+++...+.+.... ...++.++.... ..+.
T Consensus 90 ~~~~~la~~~~Gav~vpl~~~~~~~-----~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (548)
T 2d1s_A 90 FFIPVIAGLFIGVGVAPTNEIYTLR-----ELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQ 164 (548)
T ss_dssp THHHHHHHHHHTCEEEEECTTSCHH-----HHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSCBTTBC
T ss_pred HHHHHHHHHhhCCEEeccCCCCCHH-----HHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcccccccc
Confidence 9999999999999999999999976 8999999999999999987654332211 011111111100 0000
Q ss_pred -EeccccCCCCCCCCCCCCC-----C-CCcEEEEecCCCCCCceEEEEchHHHHHHHHHHHHH---cCCCCCCeEEEccC
Q psy14338 234 -VTEHLAKTPKDWAPQPRLT-----D-DTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQA---CHYTEGENMVCVLD 303 (1761)
Q Consensus 234 -~~~~~~~~~~~~~~~~~~~-----~-~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~~ 303 (1761)
..+..........+..... + +++|||+|||||||+||||+++|+++.+.+.+.... ++++++|++++++|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 244 (548)
T 2d1s_A 165 CLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVP 244 (548)
T ss_dssp BHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSC
T ss_pred cHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEecc
Confidence 0011111000000111112 4 899999999999999999999999999988887766 78899999999999
Q ss_pred CcchhhhHHHHHHHHhcCcEEEEeCCccccCCHHHHHHHHHhcCceEEEecCHHHHHHhhcCCCCCCCCCCceeEEEecC
Q psy14338 304 FKRETGLWHSVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGD 383 (1761)
Q Consensus 304 ~~~~~~~~~~i~~~L~~G~~lvi~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~~ll~~~~~~~~~l~~Lr~v~~gg 383 (1761)
++|+++++..++.+| .|+++++.+ .+++..+++.|+++++|+++++| +++..++........++++||.+++|
T Consensus 245 ~~h~~g~~~~~~~~l-~G~~~v~~~----~~~~~~~~~~i~~~~~t~~~~~P-~~~~~l~~~~~~~~~~l~~lr~i~~g- 317 (548)
T 2d1s_A 245 FHHGFGMFTTLGYLI-CGFRVVMLT----KFDEETFLKTLQDYKCTSVILVP-TLFAILNKSELLNKYDLSNLVEIASG- 317 (548)
T ss_dssp TTSHHHHHHHHHHHH-TTCEEEECC----CCCHHHHHHHHHHTTEEEEEECH-HHHHHHHHCSCGGGSCCTTCCEEEEC-
T ss_pred HHHHHHHHHHHHHHh-cCcEEEEcC----CCCHHHHHHHHHHcCCcEEEecH-HHHHHHHhCcccccccccceeEEEEc-
Confidence 999999986466777 999999998 68999999999999999999996 58888877665555678999999999
Q ss_pred CCccCCHHHHHHHHHHhhhCCCCCCccccccccccccceEeecCCCCCcccCCCccccccCcccceeeecCCCccCcccc
Q psy14338 384 GANPWSLSSCDQFLSVFQSKGLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTL 463 (1761)
Q Consensus 384 ~Ge~l~~~~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (1761)
|+++++++.++|.+.++. . .++|.||+||++.+++..+.. ....
T Consensus 318 -G~~l~~~~~~~~~~~~~~--~---~i~~~YG~TE~~~~~~~~~~~------------------------------~~~~ 361 (548)
T 2d1s_A 318 -GAPLSKEVGEAVARRFNL--P---GVRQGYGLTETTSAIIITPEG------------------------------DDKP 361 (548)
T ss_dssp -SSCCCHHHHHHHHHHTTC--S---CCEEEEECGGGSSEEEECCTT------------------------------CCCT
T ss_pred -CccCCHHHHHHHHHHcCC--C---ceeeccccccccceeeecCcc------------------------------cCCC
Confidence 999999999999998852 2 499999999998766643211 1245
Q ss_pred cccCCCCCCcEEEEEe-CCCCcccCCCCCceEEEEecCCccccccCCCccccccccccccccCCCccCCCceEeecceEE
Q psy14338 464 QDCGQVMPGCIMTVVK-MDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGF 542 (1761)
Q Consensus 464 ~~iG~p~~~~~~~I~d-~~~~~~~~p~G~~GEL~i~G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~ 542 (1761)
+++|+|+++++++|+| ++++ ++|.|+.|||+|+|+++++||||+|++|+++|. .+|||||||+|+
T Consensus 362 ~~~G~~~~~~~~~i~d~~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~------------~~g~~~TGDl~~ 427 (548)
T 2d1s_A 362 GASGKVVPLFKAKVIDLDTKK--SLGPNRRGEVCVKGPMLMKGYVNNPEATKELID------------EEGWLHTGDIGY 427 (548)
T ss_dssp TCCBEECTTCEEEEECTTTCC--BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBC------------TTSCEEEEEEEE
T ss_pred CCCCccCCCceEEEEeCCcCc--cCCCCCCeEEEECCHHHhhhhcCChHHhhhccc------------CCcEEEccCEEE
Confidence 7899999999999999 5565 699999999999999999999999999999994 378999999999
Q ss_pred EeCCCeEEEEeccCCeEEECCcccChHHHHHHHHhcCCccccccceEEEEEEecC-CCceEEEEEEeCCC--CCHHHHHH
Q psy14338 543 LGPGGLVFVCGSRDGLMTVTGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIRVL-RDERICVIAEQRPD--CSEEESFQ 619 (1761)
Q Consensus 543 ~~~dG~l~~~GR~d~qvki~G~rIe~~eIE~~l~~~~~v~~~~~~~a~v~~~~~~-~~~~l~a~v~~~~~--~~~~~l~~ 619 (1761)
+++||+|+|+||+|||||++|+||+|.|||++|.+++.| .+|+|++.++. .++.++|++++.++ .+.+++++
T Consensus 428 ~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V-----~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~ 502 (548)
T 2d1s_A 428 YDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSI-----FDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMD 502 (548)
T ss_dssp ECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTE-----EEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHH
T ss_pred EcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCc-----cEEEEEEEEcCCCCeeeEEEEEEcCCCCCCHHHHHH
Confidence 999999999999999999999999999999999998888 79999999854 67889999987654 67899999
Q ss_pred HHHHHHHHhhhcc-eeeeeEEEEeCCCCccCCCCCcccHHHHHHHHHc
Q psy14338 620 WMSRVLQAVDSIH-QVGLYCLALVPPNYLPKTPLGGIHLSECKRRFLE 666 (1761)
Q Consensus 620 ~l~~~Lp~y~~P~-~i~~~~v~~v~~~~lP~t~~GKidR~~L~~~~~~ 666 (1761)
+|+++|+.||+|. .+ +.+++||+|+|||+||++|++.+.+
T Consensus 503 ~~~~~l~~~~~p~~~i-------~~v~~lP~t~~GKi~r~~L~~~~~~ 543 (548)
T 2d1s_A 503 YVASQVSNAKRLRGGV-------RFVDEVPKGLTGKIDGRAIREILKK 543 (548)
T ss_dssp HHHTTSCGGGSCTTCE-------EECSSCCBCTTSCBCHHHHHHHHHS
T ss_pred HHHHhccccccccccE-------EEccCCCCCCcchhHHHHHHHHHhh
Confidence 9999999999999 76 4469999999999999999998864
No 21
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=1e-72 Score=732.39 Aligned_cols=507 Identities=17% Similarity=0.187 Sum_probs=376.4
Q ss_pred chhHHHHHHHHhhhcCCCcEEEEECCCCceeEEEeHHHHHHHHHHHHHHhhcCCCCccccCCCCCCCEEEEEccCCCchh
Q psy14338 80 PRNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPIN 159 (1761)
Q Consensus 80 ~~~l~~~~~~~a~~~pd~~Av~~~d~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~~~~~~Gv~~g~~V~l~~~~s~~~~ 159 (1761)
+.++.++|+++++++||++|+.+.+.++. +++||+||+++++++|+.|+ +.|+++||+|+|+++|+ ++
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~--~~~Ty~el~~~~~~lA~~L~--------~~Gv~~gd~V~i~~~n~--~e 84 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRLHTGEV--HRTTYAEVYQRARRLMGGLR--------ALGVGVGDRVATLGFNH--FR 84 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEECTTSCE--EEEEHHHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCSS--HH
T ss_pred CCCHHHHHHHHHHhCCCceEEEEecCCCC--ceecHHHHHHHHHHHHHHHH--------HcCCCCCCEEEEEcCCc--HH
Confidence 35799999999999999999986442222 68999999999999999999 89999999999999999 99
Q ss_pred HHHHHHHHHHhCCeEEecCCCCCcCccchhHHHHHHhcCCCcEEEEcccccccCccccc-----ccceeccCCCcceeEE
Q psy14338 160 FLCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAA-----GEVVAFKGWPKLTWFV 234 (1761)
Q Consensus 160 ~vva~lAvlkaG~~~vpldp~~p~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 234 (1761)
+++++|||+|+|+++||++|.++.+ |+.+++++++++++|+++.....+..... ..++..+.........
T Consensus 85 ~~~~~lA~~~~Gav~vpl~~~~~~~-----~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (541)
T 1v25_A 85 HLEAYFAVPGMGAVLHTANPRLSPK-----EIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLA 159 (541)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHH-----HHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEE
T ss_pred HHHHHHHHHhcCcEEEecCcccCHH-----HHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCccccc
Confidence 9999999999999999999999976 99999999999999999875443322110 0111111100000000
Q ss_pred eccccCCCCCCCCCCCCCCCCcEEEEecCCCCCCceEEEEchHHHHHHHHHH--HHHcCCCCCCeEEEccCCcchhhhHH
Q psy14338 235 TEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRAL--TQACHYTEGENMVCVLDFKRETGLWH 312 (1761)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~d~~l~~~~~~~~~~~~~ 312 (1761)
.+....... ......++++|||+|||||||+||||+++|+++++..... ...++++++|++++++|++|+.++..
T Consensus 160 ~~~~~~~~~---~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~ 236 (541)
T 1v25_A 160 YEEALGEEA---DPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCL 236 (541)
T ss_dssp HHHHCCSCC---CCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTH
T ss_pred HHHHhhccC---CcccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHH
Confidence 111111111 1134568999999999999999999999999998776652 34567899999999999999999874
Q ss_pred HHHHHHhcCcEEEEeCCccccCCHHHHHHHHHhcCceEEEecCHHHHHHhhcCCCCCCCCCCceeEEEecCCCccCCHHH
Q psy14338 313 SVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGANPWSLSS 392 (1761)
Q Consensus 313 ~i~~~L~~G~~lvi~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~~ll~~~~~~~~~l~~Lr~v~~gg~Ge~l~~~~ 392 (1761)
++.+++.|+++++.+. .+++..+++.|+++++|+++++| +++..++........++++||.+++| |+++++++
T Consensus 237 -~~~~l~~G~~~v~~~~---~~~~~~~~~~i~~~~~t~~~~~P-~~~~~l~~~~~~~~~~l~~lr~i~~g--G~~l~~~~ 309 (541)
T 1v25_A 237 -PYAATLVGAKQVLPGP---RLDPASLVELFDGEGVTFTAGVP-TVWLALADYLESTGHRLKTLRRLVVG--GSAAPRSL 309 (541)
T ss_dssp -HHHHHHHTCEEEECTT---CCSHHHHHHHHHHTTCCEEEECH-HHHHHHHHHHHHHTCCCSSCCEEEEC--SSCCCHHH
T ss_pred -HHHHHhcCceEEeeCC---CCCHHHHHHHHHhcCeeEEecch-HHHHHHHhhhhccCCcchhccEEEEC--CCCCCHHH
Confidence 8999999999999874 47999999999999999999996 57777766543334568899999999 99999999
Q ss_pred HHHHHHHhhhCCCCCCccccccccccccceEeecCCCCCcccCCCccccccCcccceeeecCCC-ccCcccccccCCCCC
Q psy14338 393 CDQFLSVFQSKGLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQEN-SLTSLTLQDCGQVMP 471 (1761)
Q Consensus 393 ~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~iG~p~~ 471 (1761)
.++| +.+ |++ ++|.||+||++.+++........ .... ........++|+|++
T Consensus 310 ~~~~-~~~---g~~---~~~~YG~TE~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~G~p~~ 362 (541)
T 1v25_A 310 IARF-ERM---GVE---VRQGYGLTETSPVVVQNFVKSHL--------------------ESLSEEEKLTLKAKTGLPIP 362 (541)
T ss_dssp HHHH-HHT---TCE---EEEEEECGGGSSEEEECCCCGGG--------------------TTSCHHHHHHHHTSCBEECT
T ss_pred HHHH-HHh---CCc---eeecccccccccceecccccccc--------------------cccCccccccccCCCCCcCC
Confidence 9999 555 553 99999999998776654311000 0000 000123578999999
Q ss_pred CcEEEEEeCCCCcccCCC--CCceEEEEecCCccccccCCCccccccccccccccCCCccCCCceEeecceEEEeCCCeE
Q psy14338 472 GCIMTVVKMDSPSYLCKT--DEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGFLGPGGLV 549 (1761)
Q Consensus 472 ~~~~~I~d~~~~~~~~p~--G~~GEL~i~G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~~~~dG~l 549 (1761)
|++++|+|+++++ +|. |++|||+|+||++++||||+|++|+++|. .+|||||||+|++|+||+|
T Consensus 363 ~~~~~i~d~~g~~--~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~------------~~g~~~TGDlg~~d~dG~l 428 (541)
T 1v25_A 363 LVRLRVADEEGRP--VPKDGKALGEVQLKGPWITGGYYGNEEATRSALT------------PDGFFRTGDIAVWDEEGYV 428 (541)
T ss_dssp TCEEEEECTTSCB--CCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBC------------TTSCEEEEEEEEECTTCCE
T ss_pred CcEEEEECCCCCC--CCCCCCcceEEEEeCcchhccccCChhhhhhhcc------------CCCCeEcCCEEEEcCCceE
Confidence 9999999999874 664 47999999999999999999999999994 3789999999999999999
Q ss_pred EEEeccCCeEEECCcccChHHHHHHHHhcCCccccccceEEEEEEecC-CCceEEEEEEeCC-CCCHHHHHHHHHH-HHH
Q psy14338 550 FVCGSRDGLMTVTGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIRVL-RDERICVIAEQRP-DCSEEESFQWMSR-VLQ 626 (1761)
Q Consensus 550 ~~~GR~d~qvki~G~rIe~~eIE~~l~~~~~v~~~~~~~a~v~~~~~~-~~~~l~a~v~~~~-~~~~~~l~~~l~~-~Lp 626 (1761)
+|+||+|||||++|+||+|.|||++|.+++.| .+|+|++.++. .++.++|++++.. ..+.+++++++++ +||
T Consensus 429 ~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V-----~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~l~~~~~~~~L~ 503 (541)
T 1v25_A 429 EIKDRLKDLIKSGGEWISSVDLENALMGHPKV-----KEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFA 503 (541)
T ss_dssp EEEEESSCEEEETTEEEEHHHHHCC---------------CEEEEECSSSSEEEEECC-------------------CCC
T ss_pred EEeecccceeeeCCEEECHHHHHHHHHhCCCc-----eEEEEEEecCCCcCceEEEEEEECCCCCCHHHHHHHHHhccCc
Confidence 99999999999999999999999999998888 79999999854 6788999998753 3567889999999 899
Q ss_pred HhhhcceeeeeEEEEeCCCCccCCCCCcccHHHHHHHHHc
Q psy14338 627 AVDSIHQVGLYCLALVPPNYLPKTPLGGIHLSECKRRFLE 666 (1761)
Q Consensus 627 ~y~~P~~i~~~~v~~v~~~~lP~t~~GKidR~~L~~~~~~ 666 (1761)
.||+|..+ +.+++||+|+|||+||++|++.+.+
T Consensus 504 ~~~~P~~i-------~~v~~lP~t~~GKi~r~~L~~~~~~ 536 (541)
T 1v25_A 504 KWQLPDAY-------VFAEEIPRTSAGKFLKRALREQYKN 536 (541)
T ss_dssp TTTSCSBC---------------------CCTTHHHHSTT
T ss_pred cccCCcEE-------EEeCCCCCCCccCeeHHHHHHHHHH
Confidence 99999987 5569999999999999999998643
No 22
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=9.3e-72 Score=723.15 Aligned_cols=498 Identities=17% Similarity=0.239 Sum_probs=411.8
Q ss_pred cccccccccccCCCCcCCCCCCCceEEccCCCCceeeCHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCHHHHHHHH
Q psy14338 1163 RTGYLGFLRRTSPAGVAGAPVPPGVSSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFY 1242 (1761)
Q Consensus 1163 ~~~~~~~~~~~~~~~a~~~P~~~Av~~~d~~~~~~~lTY~eL~~~a~~lA~~L~~~~Gv~~gd~V~i~~~~s~~~iva~l 1242 (1761)
.++++.|.+++. ++|+++|+++.+ .++++||+||+++++++|++|++. |+++||+|+|+++|++++++++|
T Consensus 22 ~~l~~~l~~~a~-----~~p~~~a~~~~~---~~~~~Ty~el~~~~~~lA~~L~~~-Gv~~gd~V~i~~~~~~~~~~~~l 92 (536)
T 3ni2_A 22 LPLHSYVLENLS-----NHSSKPCLINGA---NGDVYTYADVELTARRVASGLNKI-GIQQGDVIMLFLPSSPEFVLAFL 92 (536)
T ss_dssp CCHHHHHTTTGG-----GSTTSEEEEETT---TCCEEEHHHHHHHHHHHHHHHHHT-TCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcHHHHHHHHhh-----cCCCceEEEECC---CCCEEEHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCcHHHHHHHH
Confidence 567888877765 779999998421 357899999999999999999999 99999999999999999999999
Q ss_pred HHHHcCCEEEeCCCCCCCCccCChHHHHHHHHhcCCeEEEechhHHHHHhhhccc---cccccccCCc-cccCCCC-ccc
Q psy14338 1243 GCLYVGAVPVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEAS---NVVDIKSWPT-ILDTDDM-PKK 1317 (1761)
Q Consensus 1243 A~l~aG~~~vpldp~~P~~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~-~~~ 1317 (1761)
||+++|++++|++|.+|.+ ++.+++++++++++|++......+...... ..+....... ....... ...
T Consensus 93 a~~~~Gav~vpl~~~~~~~------~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (536)
T 3ni2_A 93 GASHRGAIITAANPFSTPA------ELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCLHFSELTQAD 166 (536)
T ss_dssp HHHHHTCEEEECCTTCCHH------HHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSCCCTTCEETHHHHTSC
T ss_pred HHHHhCCEEeccCCCCCHH------HHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecCCCCCccCHHHHhhcc
Confidence 9999999999999988877 999999999999999998765554432211 1111110000 0000000 000
Q ss_pred hhhhccCCCCCCCEEEEEeccCCCCCCceEEccHHHHHHHHHHHHH----HcCcCCCCeEEEEeCCccChhHHHHHHHHh
Q psy14338 1318 KLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKL----ACELYPSRHIALCLDPYCGLGFALWVLSSV 1393 (1761)
Q Consensus 1318 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~L 1393 (1761)
....+.....++++|||+|||||||+||||+++|+++++.+..... .+++.++|+++.++|++|.+++...++.+|
T Consensus 167 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l 246 (536)
T 3ni2_A 167 ENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGL 246 (536)
T ss_dssp GGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHH
T ss_pred ccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHH
Confidence 1112233467899999999999999999999999999998776654 456788999999999999988877789999
Q ss_pred hcCceEEEeCCCccccCHHHHHHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCCCCCcceEEEeecCCCChHHHH
Q psy14338 1394 YSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLT 1473 (1761)
Q Consensus 1394 ~~G~~~vl~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~~l~~Lr~v~~gGe~l~~~~l~ 1473 (1761)
..|+++++.+. +++..+++.|+++++|+++++|+++..+++.. .....++++||.+++|||++++ .+.
T Consensus 247 ~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------~~~~~~l~~lr~i~~gGe~l~~-~~~ 314 (536)
T 3ni2_A 247 RVGAPILIMPK----FEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSP-------DLDKHDLSSLRMIKSGGAPLGK-ELE 314 (536)
T ss_dssp HHTCCEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHTCS-------CGGGSCCTTCCEEEEESSCCCH-HHH
T ss_pred hcCCEEEEcCC----CCHHHHHHHHHHhCCeEEEccHHHHHHHHhCc-------ccccCCCccceEEEECCCCCCH-HHH
Confidence 99999999874 78999999999999999999999999997632 2345678999999999999999 888
Q ss_pred HHHHHHHhhCCCCCccccccccccccceeeecCCCCCCCceeEecccccccCcceecccCCCCccceeccccccCCcEEE
Q psy14338 1474 SAFSKLFSALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLPGVKVI 1553 (1761)
Q Consensus 1474 ~~~~~~~~~~g~~e~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ 1553 (1761)
++|.+.++. ..+++.||+||++.++....... ..+...+.+++|+|++|++++
T Consensus 315 ~~~~~~~~~-----~~l~~~YG~TE~~~~~~~~~~~~----------------------~~~~~~~~~~~G~~~~~~~~~ 367 (536)
T 3ni2_A 315 DTVRAKFPQ-----ARLGQGYGMTEAGPVLAMCLAFA----------------------KEPFDIKPGACGTVVRNAEMK 367 (536)
T ss_dssp HHHHHHCTT-----SEEEEEEECGGGSSEEEECGGGS----------------------SSCCCCCTTCCCEECSSCEEE
T ss_pred HHHHHHCCC-----CCccccccccccchhhhcccccC----------------------CccccCCCCCeeEeCCCcEEE
Confidence 888887743 68999999999876544321100 001112235699999999999
Q ss_pred EEcCCCCCCCCCCcceEEEEcCCcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEeccCCCCCCCCCCCC
Q psy14338 1554 IANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVAGAPVPP 1633 (1761)
Q Consensus 1554 v~d~~~~~~~p~G~~GEL~i~g~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~~~~~d~d~~~~~~ 1633 (1761)
|+|+++++++|.|++|||+|+|+++++|||| +|+.|++.| +++|||||||+|++ |+|
T Consensus 368 i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~---~p~~t~~~~--------~~~g~~~TGDl~~~------~~d------ 424 (536)
T 3ni2_A 368 IVDPETGASLPRNQPGEICIRGDQIMKGYLN---DPEATSRTI--------DKEGWLHTGDIGYI------DDD------ 424 (536)
T ss_dssp EECTTTCCBCCTTCCEEEEEESTTSCSEETT---CHHHHHHHB--------CTTSCEEEEEEEEE------CTT------
T ss_pred EEeCCCCcCCCCCCccEEEEeCcccchhhcC---ChhHHHhhc--------cCCCceEcccEEEE------cCC------
Confidence 9998889999999999999999999999999 999999999 46899999999999 999
Q ss_pred CCCcccceEEEEcccCCeEEeCCeecChHHHHHHHHHhccCcceeEEEee-----CCeEEEEEEeC-CCchhHhhHHHHH
Q psy14338 1634 GVSKLHDAVFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELD-GNESEALDLVPLV 1707 (1761)
Q Consensus 1634 g~G~~~~~l~~~GR~dd~Iki~G~rI~~~eIE~~~l~~~p~V~~a~Vv~~-----~~~~~a~v~~~-~~~~~~~~l~~~l 1707 (1761)
|+ |+|+||+|||||++|+||+|.|||+ +|.+||+|.+|+|++. ++.++++|+.. +...+.++|+++|
T Consensus 425 --G~----l~~~GR~dd~ik~~G~~v~p~eIE~-~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l 497 (536)
T 3ni2_A 425 --DE----LFIVDRLKELIKYKGFQVAPAELEA-LLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYI 497 (536)
T ss_dssp --SC----EEEEEECSCCEEETTEEECHHHHHH-HHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHH
T ss_pred --ce----EEEEecccceEEECCEEECHHHHHH-HHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCCCCHHHHHHHH
Confidence 99 9999999999999999999999999 8999999999999974 34678888764 4456778999999
Q ss_pred HHHHhhhcCceeeEEEEECCCCccCCCchhhhHHHHHHHHH
Q psy14338 1708 TNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFL 1748 (1761)
Q Consensus 1708 ~~~~Lp~~~~vP~~i~~v~~~~lP~t~~GKvdR~~L~~~~~ 1748 (1761)
+++ || .||+|+.|++++ +||+|+||||||++|++++.
T Consensus 498 ~~~-l~-~~~~p~~i~~v~--~lP~t~~GKi~R~~L~~~~~ 534 (536)
T 3ni2_A 498 SKQ-VI-FYKRIKRVFFIE--AIPKAPSGKILRKNLKEKLA 534 (536)
T ss_dssp HTT-SC-GGGCCSEEEECS--CCCBCTTSCBCHHHHHTC--
T ss_pred HHh-cc-CCccccEEEEEe--cCCCCCCCCeeHHHHHHHhc
Confidence 997 88 999999999999 99999999999999998763
No 23
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=2.8e-72 Score=726.88 Aligned_cols=497 Identities=13% Similarity=0.157 Sum_probs=407.1
Q ss_pred hhHHHHHHHHhhhcCCCcEEEEECCCCceeEEEeHHHHHHHHHHHHHHhhcCCCCccccCCCCCCCEEEEEccCCCchhH
Q psy14338 81 RNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINF 160 (1761)
Q Consensus 81 ~~l~~~~~~~a~~~pd~~Av~~~d~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~~~~~~Gv~~g~~V~l~~~~s~~~~~ 160 (1761)
.++.++|+++++++|+++|+.+.+ +++||+||+++++++|++|+ +.|+++||+|+|+++|+ +++
T Consensus 4 ~~l~~~l~~~a~~~p~~~a~~~~~------~~~Ty~el~~~~~~lA~~L~--------~~g~~~gd~V~i~~~n~--~~~ 67 (521)
T 3l8c_A 4 KDMIDSIEQFAQTQADFPVYDCLG------ERRTYGQLKRDSDSIAAFID--------SLALLAKSPVLVFGAQT--YDM 67 (521)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETT------EEEEHHHHHHHHHHHHHHHH--------HTCCCTTCCEEEEECSS--HHH
T ss_pred HHHHHHHHHHHHHCCCCcceecCC------CeecHHHHHHHHHHHHHHHH--------HcCCCCCCEEEEEeCCC--HHH
Confidence 578999999999999999999765 79999999999999999999 89999999999999999 999
Q ss_pred HHHHHHHHHhCCeEEecCCCCCcCccchhHHHHHHhcCCCcEEEEcccccccCcccccccceeccCCCcceeEEeccccC
Q psy14338 161 LCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKLTWFVTEHLAK 240 (1761)
Q Consensus 161 vva~lAvlkaG~~~vpldp~~p~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1761)
++++|||+++|+++||+||.++.+ |+.+++++++++++|+++.....+.... .+.... ......
T Consensus 68 ~~~~lA~~~~G~v~vpl~~~~~~~-----~l~~il~~~~~~~ii~~~~~~~~~~~~~---~~~~~~--------~~~~~~ 131 (521)
T 3l8c_A 68 LATFVALTKSGHAYIPVDVHSAPE-----RILAIIEIAKPSLIIAIEEFPLTIEGIS---LVSLSE--------IESAKL 131 (521)
T ss_dssp HHHHHHHHHTTCCEEEEETTSCHH-----HHHHHHHHSCCSEEEESSCCCSCCTTSE---EEEHHH--------HHHHHH
T ss_pred HHHHHHHHHhCCEEEecCccccHH-----HHHHHHHhCCCCEEEecCccccccccCc---ccchhh--------hhhccc
Confidence 999999999999999999999976 9999999999999999887544332211 110000 000000
Q ss_pred CCCCCCCCCCCCCCCcEEEEecCCCCCCceEEEEchHHHHHHHHHHHHH--cCCCCCCeEEEccCCcchhhhHHHHHHHH
Q psy14338 241 TPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQA--CHYTEGENMVCVLDFKRETGLWHSVLTSV 318 (1761)
Q Consensus 241 ~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~~i~~~L 318 (1761)
............++|+|||+|||||||+||||+++|+++++.+.+.... +++.+++++++++|++|+.+++. ++.+|
T Consensus 132 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~l 210 (521)
T 3l8c_A 132 AEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMY-WAPTL 210 (521)
T ss_dssp HTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHH-HHHHH
T ss_pred ccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHH-HHHHH
Confidence 0111122344678999999999999999999999999999988877765 77889999999999999999985 99999
Q ss_pred hcCcEEEEeCCccccCCHHHHHHHHHhcCceEEEecCHHHHHHhhcCCCCCCCCCCceeEEEecCCCccCCHHHHHHHHH
Q psy14338 319 LNGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGANPWSLSSCDQFLS 398 (1761)
Q Consensus 319 ~~G~~lvi~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~~ll~~~~~~~~~l~~Lr~v~~gg~Ge~l~~~~~~~~~~ 398 (1761)
..|+++++.+... ..++..+++.|.++++|++..+| +++..++........++++||.+++| |+++++++.++|.+
T Consensus 211 ~~G~~~~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P-~~~~~l~~~~~~~~~~~~~lr~~~~g--G~~l~~~~~~~~~~ 286 (521)
T 3l8c_A 211 ALGGTLFALPKEL-VADFKQLFTTIAQLPVGIWTSTP-SFADMAMLSDDFCQAKMPALTHFYFD--GEELTVSTARKLFE 286 (521)
T ss_dssp HTTCEEEECCGGG-TTCHHHHHHHHHHSCCSEEEECH-HHHHHHHTSTTCSTTTCTTCCEEEEC--SSCCCHHHHHHHHH
T ss_pred hcCCEEEEcCHHH-hhCHHHHHHHHHHcCCcEEEeCC-CHHHHHhhhhccccccCccceEEEEe--cccCCHHHHHHHHH
Confidence 9999999988432 45899999999999999999996 47777777666666778999999999 99999999999999
Q ss_pred HhhhCCCCCCccccccccccccceEeecCCCCCcccCCCccccccCcccceeeecCCCccCcccccccCCCCCCcEEEEE
Q psy14338 399 VFQSKGLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQVMPGCIMTVV 478 (1761)
Q Consensus 399 ~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~I~ 478 (1761)
.++. . .++|.||+||++++++..... ..........++|+|++|++++|+
T Consensus 287 ~~~~--~---~i~~~YG~TE~~~~~~~~~~~-------------------------~~~~~~~~~~~vG~p~~~~~~~i~ 336 (521)
T 3l8c_A 287 RFPS--A---KIINAYGPTEATVALSAIEIT-------------------------REMVDNYTRLPIGYPKPDSPTYII 336 (521)
T ss_dssp HCTT--C---EEEEEECCGGGSSCSEEEEEC-------------------------HHHHHHCSSCEEEEECTTSCEEEE
T ss_pred HCCC--c---eEEeCcCccHHhhhhceeecc-------------------------cccccCCCccccccccCCCEEEEE
Confidence 8853 2 499999999998655432210 000001235689999999999999
Q ss_pred eCCCCcccCCCCCceEEEEecCCccccccCCCccccccccccccccCCCccCCCceEeecceEEEeCCCeEEEEeccCCe
Q psy14338 479 KMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGFLGPGGLVFVCGSRDGL 558 (1761)
Q Consensus 479 d~~~~~~~~p~G~~GEL~i~G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~q 558 (1761)
|++++ ++|.|++|||+|+||++++||||+|++|+++|... ++++||||||+|++|+||+++|+||+|||
T Consensus 337 d~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~---------~~~~~~~TGDlg~~d~dG~l~~~GR~~d~ 405 (521)
T 3l8c_A 337 DEDGK--ELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTF---------KGQPAYHTGDIGSLTEDNILLYGGRLDFQ 405 (521)
T ss_dssp CTTSC--BCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEE---------TTEEEEEEEEEEEECSSSCEEEEEEGGGB
T ss_pred CCCcC--CCCCCCceEEEecccccChhhcCCchHhhccCcCC---------CCceeeeCCCEEEEeCCCeEEEeCcccce
Confidence 99987 59999999999999999999999999999999632 24789999999999999999999999999
Q ss_pred EEECCcccChHHHHHHHHhcCCccccccceEEEEEEecC--CCceEEEEEEeCCCCC---------HHHHHHHHHHHHHH
Q psy14338 559 MTVTGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIRVL--RDERICVIAEQRPDCS---------EEESFQWMSRVLQA 627 (1761)
Q Consensus 559 vki~G~rIe~~eIE~~l~~~~~v~~~~~~~a~v~~~~~~--~~~~l~a~v~~~~~~~---------~~~l~~~l~~~Lp~ 627 (1761)
||++|+||+|.|||++|.+++.| .+|+|++.++. .++.++|+++..++.. .++++++|+++||.
T Consensus 406 i~~~G~~v~p~eIE~~l~~~p~V-----~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 480 (521)
T 3l8c_A 406 IKYAGYRIELEDVSQQLNQSPMV-----ASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMS 480 (521)
T ss_dssp CC-----CBHHHHHHHHHTSTTE-----EEEEEECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCG
T ss_pred EeECCEEeCHHHHHHHHHcCCCc-----ceEEEEEeecCCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhhCcc
Confidence 99999999999999999998888 68888887632 4578999999877632 46899999999999
Q ss_pred hhhcceeeeeEEEEeCCCCccCCCCCcccHHHHHHHHHcC
Q psy14338 628 VDSIHQVGLYCLALVPPNYLPKTPLGGIHLSECKRRFLEG 667 (1761)
Q Consensus 628 y~~P~~i~~~~v~~v~~~~lP~t~~GKidR~~L~~~~~~~ 667 (1761)
||+|..+ +.+++||+|+||||||++|++.+.+.
T Consensus 481 ~~~P~~i-------~~v~~lP~t~~GKidr~~L~~~~~~~ 513 (521)
T 3l8c_A 481 YMMPSKF-------LYRDSLPLTPNGKIDIKTLINEVNNR 513 (521)
T ss_dssp GGSCSEE-------EECSSCCBCTTSSBCHHHHHHHTC--
T ss_pred ccCCeEE-------EEecccCCCCCcCccHHHHhhhhhcC
Confidence 9999986 55699999999999999999987653
No 24
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=1.9e-71 Score=731.56 Aligned_cols=554 Identities=21% Similarity=0.336 Sum_probs=431.6
Q ss_pred chhHHHHHHHHhhhcCCCcEEEEECCCCceeEEEeHHHHHHHHHHHHHHhhcCCCCccccCCCCCCCEEEEEccCCCchh
Q psy14338 80 PRNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPIN 159 (1761)
Q Consensus 80 ~~~l~~~~~~~a~~~pd~~Av~~~d~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~~~~~~Gv~~g~~V~l~~~~s~~~~ 159 (1761)
..++.++|+++|+++||++|+++.++++. +++||+||+++++++|+.|+ +.|+++||+|+|+++|+ ++
T Consensus 10 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~--~~~Ty~eL~~~~~~lA~~L~--------~~gv~~gd~V~i~~~~~--~~ 77 (590)
T 3kxw_A 10 CQSLVDVVRLRALHSPNKKSCTFLNKELE--ETMTYEQLDQHAKAIAATLQ--------AEGAKPGDRVLLLFAPG--LP 77 (590)
T ss_dssp CSSHHHHHHHHHHHCTTSEEEEEEETTEE--EEEEHHHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCSS--HH
T ss_pred cccHHHHHHHHHHhCCCCeEEEEEcCCee--EEEcHHHHHHHHHHHHHHHH--------HcCCCCCCEEEEEcCCc--hh
Confidence 36899999999999999999998763222 79999999999999999999 88999999999999999 99
Q ss_pred HHHHHHHHHHhCCeEEecCCCCCcCccchhHHHHHHhcCCCcEEEEcccccccCcccccccceeccCCCcceeEEecccc
Q psy14338 160 FLCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKLTWFVTEHLA 239 (1761)
Q Consensus 160 ~vva~lAvlkaG~~~vpldp~~p~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (1761)
+++++|||+++|+++||++|.++.. +.+++.++++++++++++++......+........... ....+...+...
T Consensus 78 ~~~~~lA~~~~G~~~vpl~~~~~~~--~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 152 (590)
T 3kxw_A 78 LIQAFLGCLYAGCIAVPIYPPAQEK--LLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKF---LKIPAIALESIE 152 (590)
T ss_dssp HHHHHHHHHHTTCEEEEECCCCSHH--HHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEE---TTEEEEEGGGCC
T ss_pred HHHHHHHHHHhCcEEEEecCCCchH--HHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccc---cccceeechhcc
Confidence 9999999999999999999988532 24589999999999999998875544332210000000 001111111111
Q ss_pred CCCCCCCCCCCCCCCCcEEEEecCCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCCeEEEccCCcchhhhHHHHHHHHh
Q psy14338 240 KTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFKRETGLWHSVLTSVL 319 (1761)
Q Consensus 240 ~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~i~~~L~ 319 (1761)
.............++|+|||+|||||||+||||+++|+++++.+.+....++++++|++++++|++|++|++..++.+|+
T Consensus 153 ~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~ 232 (590)
T 3kxw_A 153 LNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIY 232 (590)
T ss_dssp GGGGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHH
T ss_pred ccccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHh
Confidence 11111122345678999999999999999999999999999999999999999999999999999999999855899999
Q ss_pred cCcEEEEeCCccccCCHHHHHHHHHhcCceEEEecCHHHHHHhhcC---CCCCCCCCCceeEEEecCCCccCCHHHHHHH
Q psy14338 320 NGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLAT---KDHKDISLSSLRLLLVGDGANPWSLSSCDQF 396 (1761)
Q Consensus 320 ~G~~lvi~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~~ll~~---~~~~~~~l~~Lr~v~~gg~Ge~l~~~~~~~~ 396 (1761)
.|+++++.++..+..+|..+++.|+++++|++..+| +++..++.. ......++++||.+++| |+++++++.++|
T Consensus 233 ~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p-~~~~~l~~~~~~~~~~~~~l~~lr~~~~g--g~~l~~~~~~~~ 309 (590)
T 3kxw_A 233 GGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPN-FAYDYCVKRIREEKKEGLDLSSWVTAFNG--AEPVREETMEHF 309 (590)
T ss_dssp HTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECT-HHHHHHHHHCCGGGGTTCCCTTCCEEEEC--SSCCCHHHHHHH
T ss_pred cCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCCh-hHHHHHHHHhhhhhccCCCchhhHHHhhC--CCCCCHHHHHHH
Confidence 999999988422222899999999999999999876 466555442 33445678999999999 999999999999
Q ss_pred HHHhhhCCCCCCccccccccccccceEeecCCCCCcccCCCccccccCcccceeeecCCCccCcccccccCCCCCCcEEE
Q psy14338 397 LSVFQSKGLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQVMPGCIMT 476 (1761)
Q Consensus 397 ~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ 476 (1761)
.+.++..|++...++|.||+||++.+++......... ...+....+....+..............++|+|+++ ++
T Consensus 310 ~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~ 384 (590)
T 3kxw_A 310 YQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYK---TLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VK 384 (590)
T ss_dssp HHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCC---EEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EE
T ss_pred HHHHHHcCCCccccccccccccccceeecccCCCCce---eeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eE
Confidence 9998765655456999999999998766543210000 000000000011111111112223457899999998 89
Q ss_pred EEeCCCCcccCCCCCceEEEEecCCccccccCCCccccccccccccccCCCccCCCceEeecceEEEeCCCeEEEEeccC
Q psy14338 477 VVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGFLGPGGLVFVCGSRD 556 (1761)
Q Consensus 477 I~d~~~~~~~~p~G~~GEL~i~G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d 556 (1761)
|+|+++. .++|.|++|||+|+||++++||||+|++|+++|..+++... ++.+||||||+|+++ ||.|+|+||+|
T Consensus 385 i~d~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~----~g~~~~~TGDlg~~d-dG~l~~~GR~d 458 (590)
T 3kxw_A 385 IIDPDTL-IPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDE----RSAIYLRTGDLGFLH-ENELYVTGRIK 458 (590)
T ss_dssp EECTTTC-CBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC-------CCBEEEEEEEEEE-TTEEEEEEESS
T ss_pred EEcCCCC-cCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCC----CCCcEEecCcEEEEE-CCEEEEEcCcc
Confidence 9998843 36999999999999999999999999999999987766432 135699999999999 99999999999
Q ss_pred CeEEECCcccChHHHHHHHHhcCCccccccc--eEEEEEEecCCCceEEEEEEeCCC----CCHHHHHHHHHHHHHH-hh
Q psy14338 557 GLMTVTGRKHNADDIIATVLAVEPMKFIYRG--RIAVFSIRVLRDERICVIAEQRPD----CSEEESFQWMSRVLQA-VD 629 (1761)
Q Consensus 557 ~qvki~G~rIe~~eIE~~l~~~~~v~~~~~~--~a~v~~~~~~~~~~l~a~v~~~~~----~~~~~l~~~l~~~Lp~-y~ 629 (1761)
||||++|+||+|.|||++|+..++.+ . +|+|+++++..++.++++++...+ .+.++++++|++.|+. |+
T Consensus 459 d~Ik~~G~~v~p~eIE~~l~~~~~~v----~~~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 534 (590)
T 3kxw_A 459 DLIIIYGKNHYPQDIEFSLMHSPLHH----VLGKCAAFVIQEEHEYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQ 534 (590)
T ss_dssp CHHHHHHHTTHHHHHHHHHHHSGGGG----GEEEEEEEEEEETTEEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHS
T ss_pred ceEEECCEecCHHHHHHHHHhcCccc----cCccEEEEEecCCCCceEEEEEEeccccccchhHHHHHHHHHHHHHHHcC
Confidence 99999999999999999994444442 4 789999987778889999888765 3567899999999996 88
Q ss_pred hcc-eeeeeEEEEeCCCCccCCCCCcccHHHHHHHHHcCCCCcce
Q psy14338 630 SIH-QVGLYCLALVPPNYLPKTPLGGIHLSECKRRFLEGNLHPAN 673 (1761)
Q Consensus 630 ~P~-~i~~~~v~~v~~~~lP~t~~GKidR~~L~~~~~~~~~~~~~ 673 (1761)
+|. .+ .|+++++||+|+||||||++|++.+.++.++...
T Consensus 535 ~p~~~i-----~~v~~~~lP~t~sGKi~R~~L~~~~~~~~~~~~~ 574 (590)
T 3kxw_A 535 LEVHTI-----VLIPLKAMPHTTSGKIRRNFCRKHLLDKTLPIVA 574 (590)
T ss_dssp CCCCEE-----EEEETTCSCCCSCHHHHHHHHHHHHHHTCSCCSE
T ss_pred CceeEE-----EEECCCccCcCCCcHHHHHHHHHHHHcCCCceee
Confidence 886 33 4777899999999999999999999988877543
No 25
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=2.9e-72 Score=730.26 Aligned_cols=502 Identities=16% Similarity=0.227 Sum_probs=321.4
Q ss_pred chhHHHHHHHHhhhcCCCcEEEE-ECCCCceeEEEeHHHHHHHHHHHHHHhhcCCCCccccCCCCCCCEEEEEccCCCch
Q psy14338 80 PRNLEAAIQRYGSATYKAPVATV-LDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPI 158 (1761)
Q Consensus 80 ~~~l~~~~~~~a~~~pd~~Av~~-~d~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~~~~~~Gv~~g~~V~l~~~~s~~~ 158 (1761)
..++.++|.++++++|+++|++. .++.+. +++||+||+++++++|+.|+ +.|+++||+|+|+++|| +
T Consensus 19 ~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~--~~~Ty~el~~~~~~lA~~L~--------~~Gv~~gd~V~i~~~n~--~ 86 (550)
T 3rix_A 19 DGTAGEQLHKAMKRYALVPGTIAFTDAHIE--VNITYAEYFEMSVRLAEAMK--------RYGLNTNHRIVVCSENS--L 86 (550)
T ss_dssp CSCHHHHHHHHHHHHHTSTTCEEEEETTTC--CEEEHHHHHHHHHHHHHHHH--------HHTCCTTCEEEEECSSC--T
T ss_pred cCCHHHHHHHHHHhCCCCceEEEeeecCCC--cEeEHHHHHHHHHHHHHHHH--------HhCCCCCCEEEEEcCCc--c
Confidence 46899999999999999999763 222221 58999999999999999999 89999999999999999 9
Q ss_pred hHHHHHHHHHHhCCeEEecCCCCCcCccchhHHHHHHhcCCCcEEEEcccccccCccccc-----ccceeccCCCcc-ee
Q psy14338 159 NFLCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAA-----GEVVAFKGWPKL-TW 232 (1761)
Q Consensus 159 ~~vva~lAvlkaG~~~vpldp~~p~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~ 232 (1761)
++++++|||+++|+++||+||.++.+ |+.+++++++++++|+++.....+..... ..++..+..... .+
T Consensus 87 e~~~~~lA~~~~Gav~vpl~~~~~~~-----~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (550)
T 3rix_A 87 QFFMPVLGALFIGVAVAPANDIYNER-----ELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGF 161 (550)
T ss_dssp TTHHHHHHHHHHTCEEEECCTTCCHH-----HHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTB
T ss_pred cHHHHHHHHHHcCCEEeecCCcCCHH-----HHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccccCc
Confidence 99999999999999999999999976 89999999999999999875543322110 111111110000 00
Q ss_pred EE-eccc----cCCC--CCCCCCCCCCCCCcEEEEecCCCCCCceEEEEchHHHHHHHHHHHHH---cCCCCCCeEEEcc
Q psy14338 233 FV-TEHL----AKTP--KDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQA---CHYTEGENMVCVL 302 (1761)
Q Consensus 233 ~~-~~~~----~~~~--~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~ 302 (1761)
.. .+.. .... ....+.....++++|||+|||||||+||||+++|+++++.+.+.... +++.++|++++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (550)
T 3rix_A 162 QSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVV 241 (550)
T ss_dssp CBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECS
T ss_pred ccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEec
Confidence 00 0000 0000 01112222346889999999999999999999999999888776654 5788999999999
Q ss_pred CCcchhhhHHHHHHHHhcCcEEEEeCCccccCCHHHHHHHHHhcCceEEEecCHHHHHHhhcCCCCCCCCCCceeEEEec
Q psy14338 303 DFKRETGLWHSVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKDHKDISLSSLRLLLVG 382 (1761)
Q Consensus 303 ~~~~~~~~~~~i~~~L~~G~~lvi~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~~ll~~~~~~~~~l~~Lr~v~~g 382 (1761)
|++|+++++. ++.+|+.|+++++.+ .+++..+++.|+++++|+++++| +++..++........++++||.+++|
T Consensus 242 p~~~~~g~~~-~~~~l~~G~~~~~~~----~~~~~~~~~~i~~~~~t~~~~~P-~~~~~l~~~~~~~~~~l~~lr~i~~g 315 (550)
T 3rix_A 242 PFHHGFGMFT-TLGYLICGFRVVLMY----RFEEELFLRSLQDYKIQSALLVP-TLFSFFAKSTLIDKYDLSNLHEIASG 315 (550)
T ss_dssp CTTSHHHHHH-HHHHHHHTCEEEECS----SCCHHHHHHHHHHTTCSEEEECH-HHHHHHHHCCGGGGSCCTTCCEEEEC
T ss_pred hHHHHHHHHH-HHHHHHcCCEEEEeC----CCCHHHHHHHHHHcCCeEEEeCc-HHHHHHHhCccccccCcccccEEEEe
Confidence 9999999985 899999999999998 68999999999999999999996 58888887766667789999999999
Q ss_pred CCCccCCHHHHHHHHHHhhhCCCCCCccccccccccccceEeecCCCCCcccCCCccccccCcccceeeecCCCccCccc
Q psy14338 383 DGANPWSLSSCDQFLSVFQSKGLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLT 462 (1761)
Q Consensus 383 g~Ge~l~~~~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (1761)
|+++++++.++|.+.++ .. .++|.||+||++.+++..+.. ...
T Consensus 316 --G~~l~~~~~~~~~~~~~---~~--~v~~~YG~TE~~~~~~~~~~~------------------------------~~~ 358 (550)
T 3rix_A 316 --GAPLSKEVGEAVAKRFH---LP--GIRQGYGLTETTSAILITPEG------------------------------DDK 358 (550)
T ss_dssp --SSCCCHHHHHHHHHHTT---CS--CCEEEEECGGGSSEEEECCTT------------------------------CCC
T ss_pred --cCCCCHHHHHHHHHHcC---CC--ccccccCcCccccceecCCCC------------------------------CCC
Confidence 99999999999999984 32 488999999999777654421 124
Q ss_pred ccccCCCCCCcEEEEEeCCCCcccCCCCCceEEEEecCCccccccCCCccccccccccccccCCCccCCCceEeecceEE
Q psy14338 463 LQDCGQVMPGCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGF 542 (1761)
Q Consensus 463 ~~~iG~p~~~~~~~I~d~~~~~~~~p~G~~GEL~i~G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~ 542 (1761)
..++|+|+++++++|+|++.. .++|.|++|||+|+|+++++||||+|++|++.|. .+|||||||+|+
T Consensus 359 ~~~vG~~~~~~~~~i~d~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~------------~~g~~~TGDl~~ 425 (550)
T 3rix_A 359 PGAVGKVVPFFEAKVVDLDTG-KTLGVNQRGELCVRGPMIMSGYVNNPEATNALID------------KDGWLHSGDIAY 425 (550)
T ss_dssp TTEEEEECTTCEEEEECTTTC-CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBC------------TTSCEEEEEEEE
T ss_pred CCCcccccCCcEEEEEeCCCC-cCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcC------------CCCCeecCcEEE
Confidence 678999999999999996533 3699999999999999999999999999999983 479999999999
Q ss_pred EeCCCeEEEEeccCCeEEECCcccChHHHHHHHHhcCCccccccceEEEEEEec-CCCceEEEEEEeCCC--CCHHHHHH
Q psy14338 543 LGPGGLVFVCGSRDGLMTVTGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIRV-LRDERICVIAEQRPD--CSEEESFQ 619 (1761)
Q Consensus 543 ~~~dG~l~~~GR~d~qvki~G~rIe~~eIE~~l~~~~~v~~~~~~~a~v~~~~~-~~~~~l~a~v~~~~~--~~~~~l~~ 619 (1761)
+++||+|+|+||+|||||++|+||+|.|||++|.+++.| .+|+|++.++ ..++.++++++..++ .+.+++++
T Consensus 426 ~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V-----~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~ 500 (550)
T 3rix_A 426 WDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNI-----FDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVD 500 (550)
T ss_dssp ECTTCCEEEC----------------------------------------------------------------------
T ss_pred EeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCc-----ceEEEEEeecCCCCceEEEEEEecCCCCCCHHHHHH
Confidence 999999999999999999999999999999999999888 7999999985 467888899887654 56789999
Q ss_pred HHHHHHHHhhhcc-eeeeeEEEEeCCCCccCCCCCcccHHHHHHHHHc
Q psy14338 620 WMSRVLQAVDSIH-QVGLYCLALVPPNYLPKTPLGGIHLSECKRRFLE 666 (1761)
Q Consensus 620 ~l~~~Lp~y~~P~-~i~~~~v~~v~~~~lP~t~~GKidR~~L~~~~~~ 666 (1761)
+++++|+.|+.|. .+ +.+++||+|+||||||++|++.+.+
T Consensus 501 ~~~~~l~~~~~~~~~i-------~~v~~lP~t~~GKi~r~~L~~~~~~ 541 (550)
T 3rix_A 501 YVASQVTTAKKLRGGV-------VFVDEVPKGLTGKLDARKIREILIK 541 (550)
T ss_dssp ------------------------------------------------
T ss_pred HHHHhcccccccCCce-------EEEeecCCCCCcceeHHHHHHHHHh
Confidence 9999999986554 44 5569999999999999999998764
No 26
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=2e-72 Score=798.87 Aligned_cols=499 Identities=16% Similarity=0.178 Sum_probs=416.3
Q ss_pred ccCCCCcccccccccccccccCCCCcCCCCCCCceEEccCCCCceeeCHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcC
Q psy14338 1153 VTGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFP 1232 (1761)
Q Consensus 1153 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~P~~~Av~~~d~~~~~~~lTY~eL~~~a~~lA~~L~~~~Gv~~gd~V~i~~~ 1232 (1761)
+|.+..+....++++.|.+++. ++||++||+ ++++++||+||+++++++|++|++. |+++|++|+|+++
T Consensus 454 ~~~~~~~~~~~~l~~~~~~~~~-----~~p~~~Av~-----~~~~~lTY~eL~~~a~~lA~~L~~~-Gv~~g~~V~i~~~ 522 (1304)
T 2vsq_A 454 LNPPAQAHETKPLTYWFKEAVN-----ANPDAPALT-----YSGQTLSYRELDEEANRIARRLQKH-GAGKGSVVALYTK 522 (1304)
T ss_dssp TSCCCCCCCCCCHHHHHHHHHH-----HCTTSEEEE-----SSSCEEEHHHHHHHHHHHHHHHHHT-TCCTTCEEEECCC
T ss_pred cCCCCCCCCCCCHHHHHHHHHH-----hCCCCeEEE-----ECCeeEcHHHHHHHHHHHHHHHHhc-CcCCcCEEEEEeC
Confidence 4666555556789999988876 779999999 7889999999999999999999999 9999999999999
Q ss_pred CCHHHHHHHHHHHHcCCEEEeCCCCCCCCccCChHHHHHHHHhcCCeEEEechhHHHHHhhhccc-cccccccCCccccC
Q psy14338 1233 PGIDLICAFYGCLYVGAVPVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEAS-NVVDIKSWPTILDT 1311 (1761)
Q Consensus 1233 ~s~~~iva~lA~l~aG~~~vpldp~~P~~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 1311 (1761)
||+++++++|||+|+|++||||||.+|.+ |+.+++++++++++|++......+...... ..+........
T Consensus 523 ~s~~~vv~~lailkaG~~~vpldp~~p~~------rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 593 (1304)
T 2vsq_A 523 RSLELVIGILGVLKAGAAYLPVDPKLPED------RISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQTRF--- 593 (1304)
T ss_dssp SSHHHHHHHHHHHHTTCEEEECCTTSCHH------HHHHHHHHHTCCEEEECSTTCTTSTTCCCCSEEEESSCGGGG---
T ss_pred CCHHHHHHHHHHHHHCCEEEEECCCCHHH------HHHHHHHHcCCCEEEECcchhhhhhccCCCCcEEEecccccc---
Confidence 99999999999999999999999999998 999999999999999987654332211100 00000000000
Q ss_pred CCCccchhhhccCCCCCCCEEEEEeccCCCCCCceEEccHHHHHHHHHHHHHHcCcCCCCeEEEEeCCccChhHHHHHHH
Q psy14338 1312 DDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLS 1391 (1761)
Q Consensus 1312 ~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 1391 (1761)
............|+++|||+|||||||+||||+++|+++++. .+....++++++|+++.+.++.|+.+. +++|.
T Consensus 594 ----~~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~ 667 (1304)
T 2vsq_A 594 ----EEQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFT-FDFYA 667 (1304)
T ss_dssp ----GSCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHH-HHHHH
T ss_pred ----ccccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHH-HHHHH
Confidence 000111223457899999999999999999999999999976 455567788899999888888877765 78999
Q ss_pred HhhcCceEEEeCCCccccCHHHHHHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCCCCCcceEEEeecCCCChHH
Q psy14338 1392 SVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIH 1471 (1761)
Q Consensus 1392 ~L~~G~~~vl~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~~l~~Lr~v~~gGe~l~~~~ 1471 (1761)
+|++|+++++.++.. .+++..+.+.|++++||+++++|++++.+.+. ....+++||.+++|||++++ .
T Consensus 668 ~l~~G~~l~~~~~~~-~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~----------~~~~~~~lr~~~~gGe~l~~-~ 735 (1304)
T 2vsq_A 668 SMLNAARLIIADEHT-LLDTERLTDLILQENVNVMFATTALFNLLTDA----------GEDWMKGLRCILFGGERASV-P 735 (1304)
T ss_dssp HHTTTCEEEECCGGG-TTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHH----------CSHHHHTCSEEEEESSCCCH-H
T ss_pred HHHcCCEEEECChhh-cCCHHHHHHHHHHcCCcEEEccHHHHHHHHhh----------chhcCCCccEEEEecCCCCH-H
Confidence 999999999998643 57999999999999999999999999999752 12235789999999999999 7
Q ss_pred HHHHHHHHHhhCCCCCccccccccccccceeeecCCCCCCCceeEecccccccCcceecccCCCCccceeccccccCCcE
Q psy14338 1472 LTSAFSKLFSALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLPGVK 1551 (1761)
Q Consensus 1472 l~~~~~~~~~~~g~~e~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~ 1551 (1761)
+.++|.+.++. ..++|.||+||++++++...... .+.....++||+|++|++
T Consensus 736 ~~~~~~~~~~~-----~~l~n~YG~TE~~~~~~~~~~~~-----------------------~~~~~~~~~iG~p~~~~~ 787 (1304)
T 2vsq_A 736 HVRKALRIMGP-----GKLINCYGPTEGTVFATAHVVHD-----------------------LPDSISSLPIGKPISNAS 787 (1304)
T ss_dssp HHHHHHHHHCT-----TCEEEEECCGGGSSCSEEEECCC-----------------------CCSSCSSCCCBEECTTEE
T ss_pred HHHHHHHhCCC-----CEEEEeEChhHHhHHheeeeccC-----------------------ccccCCCCCCceeeCCCE
Confidence 77888777642 57999999999876543211100 011122357999999999
Q ss_pred EEEEcCCCCCCCCCCcceEEEEcCCcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEeccCCCCCCCCCC
Q psy14338 1552 VIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVAGAPV 1631 (1761)
Q Consensus 1552 ~~v~d~~~~~~~p~G~~GEL~i~g~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~~~~~d~d~~~~ 1631 (1761)
++|+|++ +++||.|++|||||+|+++++|||| +|++|+++|+++||. +++|||||||+||| ++|
T Consensus 788 ~~i~d~~-~~~~p~G~~GEl~i~G~~v~~GY~~---~p~~T~~~f~~~p~~--~g~~~yrTGDl~~~------~~d---- 851 (1304)
T 2vsq_A 788 VYILNEQ-SQLQPFGAVGELCISGMGVSKGYVN---RADLTKEKFIENPFK--PGETLYRTGDLARW------LPD---- 851 (1304)
T ss_dssp EEEECTT-SCBCCTTCCEEEEEEETTCCCCBTT---CHHHHHHHEEECTTS--TTCEEEEEEEEEEE------CTT----
T ss_pred EEEECCC-cCCCCCCCceEEEEeccccCccccC---CcccchhhhccCCCC--CCCeeEecCCeEEE------cCC----
Confidence 9999965 8999999999999999999999999 999999999999984 47899999999999 999
Q ss_pred CCCCCcccceEEEEcccCCeEEeCCeecChHHHHHHHHHhccCcceeEEEeeC-----CeEEEEEEeCCCchhHhhHHHH
Q psy14338 1632 PPGVSKLHDAVFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEALDLVPL 1706 (1761)
Q Consensus 1632 ~~g~G~~~~~l~~~GR~dd~Iki~G~rI~~~eIE~~~l~~~p~V~~a~Vv~~~-----~~~~a~v~~~~~~~~~~~l~~~ 1706 (1761)
|+ |+|+||+|||||+||+||+|+|||+ +|.+||+|.+|+|++.. +.++|||+... ..+.++++++
T Consensus 852 ----G~----l~~~GR~d~qvki~G~rie~~eIE~-~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~-~~~~~~l~~~ 921 (1304)
T 2vsq_A 852 ----GT----IEYAGRIDDQVKIRGHRIELEEIEK-QLQEYPGVKDAVVVADRHESGDASINAYLVNRT-QLSAEDVKAH 921 (1304)
T ss_dssp ----SC----EEEEEEGGGEEEETTEEEEHHHHHH-HHHHSSSCCEEEEEEECCSSSCCEEEEEEECSS-SSCHHHHHHH
T ss_pred ----Ce----EEEEcCCCCEEEECCEeeCHHHHHH-HHHhCCCCceEEEEEEecCCCCEEEEEEEeCCC-CCCHHHHHHH
Confidence 99 9999999999999999999999999 89999999999999743 47889988653 5567899999
Q ss_pred HHHHHhhhcCceeeEEEEECCCCccCCCchhhhHHHHHHHH
Q psy14338 1707 VTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGF 1747 (1761)
Q Consensus 1707 l~~~~Lp~~~~vP~~i~~v~~~~lP~t~~GKvdR~~L~~~~ 1747 (1761)
|+++ || .||+|+.|++++ +||+|+||||||++|++..
T Consensus 922 l~~~-Lp-~ymvP~~~~~l~--~lP~t~~GKidR~~L~~~~ 958 (1304)
T 2vsq_A 922 LKKQ-LP-AYMVPQTFTFLD--ELPLTTNGKVNKRLLPKPD 958 (1304)
T ss_dssp HHHH-SC-GGGSCSEEEEES--CCCCCSSCSSCCSCCCCCC
T ss_pred HHHh-Ch-HhhhccEEEEec--ccCCCCCcccCHhhcCCcc
Confidence 9997 98 999999999999 9999999999999998754
No 27
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.9e-71 Score=713.88 Aligned_cols=479 Identities=18% Similarity=0.219 Sum_probs=398.4
Q ss_pred CCCCCCCceEEccCCCCceeeCHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeCCCCC
Q psy14338 1179 AGAPVPPGVSSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 1258 (1761)
Q Consensus 1179 ~~~P~~~Av~~~d~~~~~~~lTY~eL~~~a~~lA~~L~~~~Gv~~gd~V~i~~~~s~~~iva~lA~l~aG~~~vpldp~~ 1258 (1761)
+++|+++|+...+ ++++++||+||+++++++|++|+++ |+++||+|+|+++|++++++++|||+++|+++|||||.+
T Consensus 11 ~~~p~~~a~~~~~--~~~~~~Ty~eL~~~~~~lA~~L~~~-Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~ 87 (503)
T 4fuq_A 11 DKLDDPHKLAIET--AAGDKISYAELVARAGRVANVLVAR-GLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAY 87 (503)
T ss_dssp SCCSCTTSEEEEE--TTCCEEEHHHHHHHHHHHHHHHHHT-TCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred HhCCCCceEEEec--CCCcEEEHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEecCCCC
Confidence 4779999988543 3467899999999999999999999 999999999999999999999999999999999999988
Q ss_pred CCCccCChHHHHHHHHhcCCeEEEechhHHHHHhhhccccccccccCCccccCCCCc----cchhhhccCCCCCCCEEEE
Q psy14338 1259 PQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDMP----KKKLAALYRAPTAEMLAYL 1334 (1761)
Q Consensus 1259 P~~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~a~i 1334 (1761)
|.+ ++.+++++++++++|++......+.............+... ...... ............++++|||
T Consensus 88 ~~~------~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~a~i 160 (503)
T 4fuq_A 88 TLH------ELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPD-GRGSLTDAAAGASEAFATIDRGADDLAAI 160 (503)
T ss_dssp CHH------HHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTT-SCSHHHHHHHTSCSCCCCCCCCTTSEEEE
T ss_pred CHH------HHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCC-cccccchhhhcCCCCcCcCCCCCCCeEEE
Confidence 887 99999999999999999765432222111000000000000 000000 0000111234578999999
Q ss_pred EeccCCCCCCceEEccHHHHHHHHHHHHHHcCcCCCCeEEEEeCCccChhHHHHHHHHhhcCceEEEeCCCccccCHHHH
Q psy14338 1335 DFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALW 1414 (1761)
Q Consensus 1335 i~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~L~~G~~~vl~~~~~~~~~~~~l 1414 (1761)
+|||||||+||||+++|+++.+.+.+....+++.++|+++..+|++|.+++...++.+++.|+++++.+. +++..+
T Consensus 161 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~----~~~~~~ 236 (503)
T 4fuq_A 161 LYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPK----FDPDKI 236 (503)
T ss_dssp EECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSS----CCHHHH
T ss_pred EECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCC----CCHHHH
Confidence 9999999999999999999999999999999999999999999999988876667889999999999884 799999
Q ss_pred HHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCCCCCcceEEEeecCCCChHHHHHHHHHHHhhCCCCCccccccc
Q psy14338 1415 LSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALGLSPRAVSTSF 1494 (1761)
Q Consensus 1415 ~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~~l~~Lr~v~~gGe~l~~~~l~~~~~~~~~~~g~~e~~i~~~y 1494 (1761)
++.++ ++|+++++|+++..+++.. .....++++||.+++|||++++ .+.++|.+.++ ..++|.|
T Consensus 237 ~~~i~--~~t~~~~~P~~~~~l~~~~-------~~~~~~~~~lr~~~~gg~~l~~-~~~~~~~~~~~------~~~~~~Y 300 (503)
T 4fuq_A 237 LDLMA--RATVLMGVPTFYTRLLQSP-------RLTKETTGHMRLFISGSAPLLA-DTHREWSAKTG------HAVLERY 300 (503)
T ss_dssp HHHHT--TCCEEEECHHHHHHHHTCT-------TCSTTTTTTCCEEEECSSCCCH-HHHHHHHHHHS------CCEEECC
T ss_pred HHHHh--hcCEEEEHHHHHHHHHhCC-------CccccchhhcEEEEECCCCCCH-HHHHHHHHHhC------CCccceE
Confidence 99998 8999999999999997632 2345568899999999999999 88888888764 5799999
Q ss_pred cccccceeeecCCCCCCCceeEecccccccCcceecccCCCCccceeccccccCCcEEEEEcCCCCCCCCCCcceEEEEc
Q psy14338 1495 GCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLPGVKVIIANPETKGQCGDSHLGEIWVQ 1574 (1761)
Q Consensus 1495 G~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~~~p~G~~GEL~i~ 1574 (1761)
|+||++..+..... .....+++|+|++|++++|+|+++++++|.|++|||+|+
T Consensus 301 G~TE~~~~~~~~~~---------------------------~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~ 353 (503)
T 4fuq_A 301 GMTETNMNTSNPYD---------------------------GDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVK 353 (503)
T ss_dssp EETTTEECBCCCSS---------------------------SCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEE
T ss_pred cccccCcccccCCC---------------------------CCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEE
Confidence 99998765432110 011234699999999999999888999999999999999
Q ss_pred CCcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEeccCCCCCCCCCCCCCCCcccceEEEEcccCCeEEe
Q psy14338 1575 SPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDAVFVVGALDETIML 1654 (1761)
Q Consensus 1575 g~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~~~~~d~d~~~~~~g~G~~~~~l~~~GR~dd~Iki 1654 (1761)
|+++++|||| +|+.|+++| ..+|||||||+|++ |+| |+ |+|+||+|||||+
T Consensus 354 g~~v~~GY~~---~~~~t~~~f--------~~~g~~~TGDl~~~------~~d--------G~----l~~~GR~dd~ik~ 404 (503)
T 4fuq_A 354 GPNVFKGYWR---MPEKTKSEF--------RDDGFFITGDLGKI------DER--------GY----VHILGRGKDLVIT 404 (503)
T ss_dssp STTSCCCBTT---CHHHHHHTB--------CTTSCEEEEEEEEE------CTT--------CE----EEECCSSTTCEEE
T ss_pred CCchhhhhcC---ChhhhHhhh--------CCCCCeEcceeEEE------cCC--------Cc----EEEEecCCCEEEE
Confidence 9999999999 999999999 35789999999999 999 99 9999999999999
Q ss_pred CCeecChHHHHHHHHHhccCcceeEEEee-----CCeEEEEEEeC-CCchhHhhHHHHHHHHHhhhcCceeeEEEEECCC
Q psy14338 1655 RGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELD-GNESEALDLVPLVTNAVLEEHHLIVGVAVVVDPG 1728 (1761)
Q Consensus 1655 ~G~rI~~~eIE~~~l~~~p~V~~a~Vv~~-----~~~~~a~v~~~-~~~~~~~~l~~~l~~~~Lp~~~~vP~~i~~v~~~ 1728 (1761)
+|+||+|.|||+ +|.+||+|.+|+|++. ++.++++|+.. +...+.++++++|+++ || .||+|+.|++++
T Consensus 405 ~G~~v~p~eIE~-~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~-L~-~~~~P~~i~~v~-- 479 (503)
T 4fuq_A 405 GGFNVYPKEIES-EIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQ-LA-KFKMPKKVIFVD-- 479 (503)
T ss_dssp TTEEECHHHHHH-HHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHBTT-BC-GGGCCSEEEEES--
T ss_pred CCEEECHHHHHH-HHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHHHhh-cc-cCCCCCEEEEEC--
Confidence 999999999999 8999999999999974 34688888874 4556778999999987 98 999999999999
Q ss_pred CccCCCchhhhHHHHHHHHH
Q psy14338 1729 VVPINSRGEKQRMHLRDGFL 1748 (1761)
Q Consensus 1729 ~lP~t~~GKvdR~~L~~~~~ 1748 (1761)
+||+|+|||+||++|++.+.
T Consensus 480 ~lP~t~~GKi~R~~L~~~~~ 499 (503)
T 4fuq_A 480 DLPRNTMGKVQKNVLRETYK 499 (503)
T ss_dssp CCCBCTTSCBCHHHHHHHTT
T ss_pred CCCCCcccceeHHHHHHHHH
Confidence 99999999999999999874
No 28
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=7.9e-72 Score=723.62 Aligned_cols=490 Identities=17% Similarity=0.201 Sum_probs=396.4
Q ss_pred hhHHHHHHHHhhhcCCCcEEEEECCCCceeEEEeHHHHHHHHHHHHHHhhcCCCCccccCCCCCCCEEEEEccCCCchhH
Q psy14338 81 RNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINF 160 (1761)
Q Consensus 81 ~~l~~~~~~~a~~~pd~~Av~~~d~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~~~~~~Gv~~g~~V~l~~~~s~~~~~ 160 (1761)
.++.++|+++++ +|+++|+++.+ +++||+||+++++++|+.|+ +.|+++||+|+|+++|+ +++
T Consensus 24 ~~~~~~l~~~~~-~p~~~A~~~~~------~~~Ty~el~~~~~~lA~~L~--------~~Gv~~gd~V~i~~~n~--~~~ 86 (529)
T 2v7b_A 24 NFAAYLFRLNET-RAGKTAYIDDT------GSTTYGELEERARRFASALR--------TLGVHPEERILLVMLDT--VAL 86 (529)
T ss_dssp CHHHHHHHHTGG-GTTSEEEECSS------CEEEHHHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCSS--THH
T ss_pred eHHHHHHHhhhc-cCCceEEEeCC------CCccHHHHHHHHHHHHHHHH--------HcCCCCCCEEEEEcCCc--HHH
Confidence 468999999999 99999998654 58999999999999999999 89999999999999999 999
Q ss_pred HHHHHHHHHhCCeEEecCCCCCcCccchhHHHHHHhcCCCcEEEEcccccccCccccc------ccceeccCCCccee--
Q psy14338 161 LCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAA------GEVVAFKGWPKLTW-- 232 (1761)
Q Consensus 161 vva~lAvlkaG~~~vpldp~~p~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-- 232 (1761)
++++|||+++|+++||+||.++.+ |+.+++++++++++|+++.....+..... ..++..+......+
T Consensus 87 ~~~~lA~~~~G~~~vpl~~~~~~~-----~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (529)
T 2v7b_A 87 PVAFLGALYAGVVPVVANTLLTPA-----DYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLA 161 (529)
T ss_dssp HHHHHHHHHHTCEEEECCTTCCHH-----HHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CC
T ss_pred HHHHHHHHHcCceEEecCcccCHH-----HHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccc
Confidence 999999999999999999999976 89999999999999998875433322110 11111111000000
Q ss_pred -EEeccccCCCCCCCCCCCCCCCCcEEEEecCCCCCCceEEEEchHHH-HHHHHHHHHHcCCCCCCeEEEccCCcchhhh
Q psy14338 233 -FVTEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAM-LSHCRALTQACHYTEGENMVCVLDFKRETGL 310 (1761)
Q Consensus 233 -~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l-~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 310 (1761)
...+...... .........++|+|||+|||||||+||||+++|+++ .+........+++.++|++++++|++|++++
T Consensus 162 ~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~ 240 (529)
T 2v7b_A 162 PLFEELIDAAA-PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGL 240 (529)
T ss_dssp CBHHHHHHTSC-CCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHH
T ss_pred cchhhhhccCC-CcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHH
Confidence 0011111111 111223457899999999999999999999999999 6665555556788999999999999999998
Q ss_pred HHHHHHHHhcCcEEEEeCCccccCCHHHHHHHHHhcCceEEEecCHHHHHHhhcCCCCCCCCCCceeEEEecCCCccCCH
Q psy14338 311 WHSVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGANPWSL 390 (1761)
Q Consensus 311 ~~~i~~~L~~G~~lvi~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~~ll~~~~~~~~~l~~Lr~v~~gg~Ge~l~~ 390 (1761)
...++.+|..|+++++.++ .+++..+++.|+++++|+++++| +++..++...........+||.+++| |+++++
T Consensus 241 ~~~~~~~l~~G~~~v~~~~---~~~~~~~~~~i~~~~~t~~~~~P-~~~~~l~~~~~~~~~~~~~lr~~~~g--Ge~l~~ 314 (529)
T 2v7b_A 241 GNGLTFPLSVGATAILMAE---RPTADAIFARLVEHRPTVFYGVP-TLYANMLVSPNLPARADVAIRICTSA--GEALPR 314 (529)
T ss_dssp HHHTHHHHHHTCEEECCCS---CCCHHHHHHHHHHSCCSEEEECH-HHHHHHHTCTTCCCGGGCCCCEEEEC--SSCCCH
T ss_pred HHHHHHHHhcCcEEEEecC---CCCHHHHHHHHHHhCCEEEEecH-HHHHHHHhCcccccccCCceEEEEEc--CCCCCH
Confidence 7657889999999999853 67999999999999999999996 47777776554333212489999999 999999
Q ss_pred HHHHHHHHHhhhCCCCCCccccccccccccceEeecCCCCCcccCCCccccccCcccceeeecCCCccCcccccccCCCC
Q psy14338 391 SSCDQFLSVFQSKGLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQVM 470 (1761)
Q Consensus 391 ~~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~ 470 (1761)
++.++|.+.+ |++ ++|.||+||++.+++..... .....++|+|+
T Consensus 315 ~~~~~~~~~~---g~~---i~~~YG~TE~~~~~~~~~~~------------------------------~~~~~~~G~p~ 358 (529)
T 2v7b_A 315 EIGERFTAHF---GCE---ILDGIGSTEMLHIFLSNRAG------------------------------AVEYGTTGRPV 358 (529)
T ss_dssp HHHHHHHHHH---SCC---EEEEEECTTTSSEEEECCTT------------------------------CCCTTSCCEEC
T ss_pred HHHHHHHHHh---CCc---eeeeEchhhcCceeeccccC------------------------------CCccCCcccCC
Confidence 9999999988 554 99999999996554433211 12356899999
Q ss_pred CCcEEEEEeCCCCcccCCCCCceEEEEecCCccccccCCCccccccccccccccCCCccCCCceEeecceEEEeCCCeEE
Q psy14338 471 PGCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGFLGPGGLVF 550 (1761)
Q Consensus 471 ~~~~~~I~d~~~~~~~~p~G~~GEL~i~G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~~~~dG~l~ 550 (1761)
+|++++|+|++++ ++|.|++|||+|+|+++++||||+|+.|+++|. ++||||||+|++++||+|+
T Consensus 359 ~~~~~~i~d~~g~--~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~-------------~~~~~TGDl~~~~~~G~l~ 423 (529)
T 2v7b_A 359 PGYEIELRDEAGH--AVPDGEVGDLYIKGPSAAVMYWNNREKSRATFL-------------GEWIRSGDKYCRLPNGCYV 423 (529)
T ss_dssp TTCEEEEECTTSC--BCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEE-------------TTEEEEEEEEEECTTSCEE
T ss_pred CCCEEEEECCCCC--CCCCCCccEEEEecCCcccccCCChHHHHHhhh-------------cCCcccCceEEECCCccEE
Confidence 9999999999887 599999999999999999999999999999996 7899999999999999999
Q ss_pred EEeccCCeEEECCcccChHHHHHHHHhcCCccccccceEEEEEEecCCCceEEEEEEeCCCC-----CHHHHHHHHHHHH
Q psy14338 551 VCGSRDGLMTVTGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIRVLRDERICVIAEQRPDC-----SEEESFQWMSRVL 625 (1761)
Q Consensus 551 ~~GR~d~qvki~G~rIe~~eIE~~l~~~~~v~~~~~~~a~v~~~~~~~~~~l~a~v~~~~~~-----~~~~l~~~l~~~L 625 (1761)
|+||+|||||++|+||+|.|||++|.+++.| .+|+|++.....++.++|+++...+. ..++++++|+++|
T Consensus 424 ~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V-----~~~~vv~~~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~L 498 (529)
T 2v7b_A 424 YAGRSDDMLKVSGQYVSPVEVEMVLVQHDAV-----LEAAVVGVDHGGLVKTRAFVVLKREFAPSEILAEELKAFVKDRL 498 (529)
T ss_dssp EEEEGGGCBC----CBCHHHHHHHHTTSTTE-----EEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHTTS
T ss_pred EeCccCCeEEECCEEECHHHHHHHHHhCCCc-----ceEEEEEecCCCceEEEEEEEecCCCCcchhHHHHHHHHHHhhc
Confidence 9999999999999999999999999998888 79999998555678899999987653 2467999999999
Q ss_pred HHhhhcceeeeeEEEEeCCCCccCCCCCcccHHHHHH
Q psy14338 626 QAVDSIHQVGLYCLALVPPNYLPKTPLGGIHLSECKR 662 (1761)
Q Consensus 626 p~y~~P~~i~~~~v~~v~~~~lP~t~~GKidR~~L~~ 662 (1761)
|.||+|..+ +.+++||+|+|||+||++|++
T Consensus 499 ~~~~~P~~i-------~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 499 APHKYPRDI-------VFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp CTTTSCSEE-------EEESCCCBCTTSCBCHHHHHC
T ss_pred chhhCCeEE-------EEeccCCCCCccchhHHhHhh
Confidence 999999986 445999999999999999985
No 29
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=1.3e-71 Score=721.60 Aligned_cols=494 Identities=16% Similarity=0.196 Sum_probs=410.2
Q ss_pred cccccccccccCCCCcCCCCCCCceEEccCCCCceeeCHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCHHHHHHHH
Q psy14338 1163 RTGYLGFLRRTSPAGVAGAPVPPGVSSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFY 1242 (1761)
Q Consensus 1163 ~~~~~~~~~~~~~~~a~~~P~~~Av~~~d~~~~~~~lTY~eL~~~a~~lA~~L~~~~Gv~~gd~V~i~~~~s~~~iva~l 1242 (1761)
.++++.|.+++. ++||++|++ ++++++||+||+++++++|++|++. |+++||+|+|+++|++++++++|
T Consensus 25 ~tl~~~l~~~a~-----~~p~~~A~~-----~~~~~~Ty~eL~~~~~~lA~~L~~~-Gv~~gd~V~i~~~~~~~~~~~~l 93 (539)
T 1mdb_A 25 ETFGDLLRDRAA-----KYGDRIAIT-----CGNTHWSYRELDTRADRLAAGFQKL-GIQQKDRVVVQLPNIKEFFEVIF 93 (539)
T ss_dssp CCHHHHHHHHHH-----HHTTSEEEE-----ETTEEEEHHHHHHHHHHHHHHHHHH-TCCTTCEEEECCCSSHHHHHHHH
T ss_pred CCHHHHHHHHHH-----HCCCCEEEE-----eCCCcccHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCcHHHHHHHH
Confidence 467777777765 679999999 6678999999999999999999999 99999999999999999999999
Q ss_pred HHHHcCCEEEeCCCCCCCCccCChHHHHHHHHhcCCeEEEechhH--------HHHHhh-hcccc-ccccc---cCCccc
Q psy14338 1243 GCLYVGAVPVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNV--------IKLLKS-KEASN-VVDIK---SWPTIL 1309 (1761)
Q Consensus 1243 A~l~aG~~~vpldp~~P~~~~~~~~rl~~il~~~~~~~vl~~~~~--------~~~~~~-~~~~~-~~~~~---~~~~~~ 1309 (1761)
||+++|+++||++|.+|.+ ++.+++++++++++|++... ...+.. ..... ++... .+..+.
T Consensus 94 A~~~~Ga~~vpl~~~~~~~------~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (539)
T 1mdb_A 94 ALFRLGALPVFALPSHRSS------EITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLE 167 (539)
T ss_dssp HHHHHTCEEEECCTTCCHH------HHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTSEEGG
T ss_pred HHHHcCeEEecCCCCCCHH------HHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCccchhhhh
Confidence 9999999999999988877 99999999999999998642 111111 11000 00000 011111
Q ss_pred cCCCCccchhhhccCCCCCCCEEEEEeccCCCCCCceEEccHHHHHHHHHHHHHHcCcCCCCeEEEEeCCccChhHHH-H
Q psy14338 1310 DTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFAL-W 1388 (1761)
Q Consensus 1310 ~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~ 1388 (1761)
.... .........++++|||+|||||||+||||+++|+++.+.+.+....+++.++|+++..+|++|.+++.. .
T Consensus 168 ~~~~-----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~ 242 (539)
T 1mdb_A 168 DLHT-----EPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPG 242 (539)
T ss_dssp GCCC-----CCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSH
T ss_pred hccc-----cccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHH
Confidence 0000 001123457899999999999999999999999999999999999999999999999999999988865 6
Q ss_pred HHHHhhcCceEEEeCCCccccCHHHHHHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCCCCCcceEEEeecCCCC
Q psy14338 1389 VLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERP 1468 (1761)
Q Consensus 1389 ~~~~L~~G~~~vl~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~~l~~Lr~v~~gGe~l~ 1468 (1761)
++.+|+.|+++++.+. +++..+++.|+++++|+++++|+++..+++.. .....++++||.+++|||+++
T Consensus 243 ~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------~~~~~~l~~lr~~~~gG~~l~ 311 (539)
T 1mdb_A 243 VLGVLYAGGRVVLSPS----PSPDDAFPLIEREKVTITALVPPLAMVWMDAA-------SSRRDDLSSLQVLQVGGAKFS 311 (539)
T ss_dssp HHHHHHTTCEEEECSS----SSHHHHHHHHHHHTCSEEEECHHHHHHHHHHH-------HHCCCCCTTCCEEEEESSCCC
T ss_pred HHHHHHhCCEEEECCC----CCHHHHHHHHHHcCCeEEEccHHHHHHHHhCc-------cccCCCccceeEEEEcCCCCC
Confidence 8999999999999874 79999999999999999999999999997642 234567899999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCccccccccccccceeeecCCCCCCCceeEecccccccCcceecccCCCCccceeccccccC
Q psy14338 1469 RIHLTSAFSKLFSALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLP 1548 (1761)
Q Consensus 1469 ~~~l~~~~~~~~~~~g~~e~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~ 1548 (1761)
+ .+.++|.+.++ +.+++.||+||++..+.. ... +......++|+|++
T Consensus 312 ~-~~~~~~~~~~~------~~~~~~YG~TE~~~~~~~-~~~-------------------------~~~~~~~~~G~p~~ 358 (539)
T 1mdb_A 312 A-EAARRVKAVFG------CTLQQVFGMAEGLVNYTR-LDD-------------------------PEEIIVNTQGKPMS 358 (539)
T ss_dssp H-HHHTTHHHHTC------SEEEEEEECTTSCEEECC-TTS-------------------------CHHHHHHCCCEESS
T ss_pred H-HHHHHHHHHhC------CcEEEEEcCCCCcccccC-CCC-------------------------cHHhcCCCCCcccC
Confidence 9 78888877663 579999999996533221 100 00112356999997
Q ss_pred C-cEEEEEcCCCCCCCCCCcceEEEEcCCcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEeccCCCCCC
Q psy14338 1549 G-VKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVA 1627 (1761)
Q Consensus 1549 ~-~~~~v~d~~~~~~~p~G~~GEL~i~g~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~~~~~d~d 1627 (1761)
+ .+++|+|++ ++++|.|++|||+|+|+++++|||| +|++|+++|. .+|||||||+|++ |+|
T Consensus 359 ~~~~~~i~d~~-~~~~~~g~~GEl~v~g~~v~~GY~~---~~~~t~~~f~--------~~g~~~TGDlg~~------~~d 420 (539)
T 1mdb_A 359 PYDESRVWDDH-DRDVKPGETGHLLTRGPYTIRGYYK---AEEHNAASFT--------EDGFYRTGDIVRL------TRD 420 (539)
T ss_dssp TTCEEEEECTT-SCBCCTTCCEEEEEECTTSCSSCTT---CHHHHHHHBC--------TTSCEEEEEEEEE------CTT
T ss_pred CCceEEEECCC-CCCCcCCCcceEEeeCcccchhhcC---Chhhhhhhcc--------CCCCeecCceEEE------CCC
Confidence 6 589999965 8999999999999999999999999 9999999993 5789999999999 999
Q ss_pred CCCCCCCCCcccceEEEEcccCCeEEeCCeecChHHHHHHHHHhccCcceeEEEee-----CCeEEEEEEeCCCchhHhh
Q psy14338 1628 GAPVPPGVSKLHDAVFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELDGNESEALD 1702 (1761)
Q Consensus 1628 ~~~~~~g~G~~~~~l~~~GR~dd~Iki~G~rI~~~eIE~~~l~~~p~V~~a~Vv~~-----~~~~~a~v~~~~~~~~~~~ 1702 (1761)
|+ |+|+||+|||||++|+||+|.|||+ +|.+||+|.+|+|++. ++.++++|+..+...+.++
T Consensus 421 --------G~----l~~~GR~dd~ik~~G~~v~p~eIE~-~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~ 487 (539)
T 1mdb_A 421 --------GY----IVVEGRAKDQINRGGEKVAAEEVEN-HLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAE 487 (539)
T ss_dssp --------SC----EEEEEEGGGCEECSSCEECHHHHHH-HHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCCCHHH
T ss_pred --------Cc----EEEeccccceEEECCEEECHHHHHH-HHHhCCCcceEEEEeccccccCceEEEEEEECCCCCCHHH
Confidence 99 9999999999999999999999999 8999999999999974 3578899888766667889
Q ss_pred HHHHHHHHHhhhcCceeeEEEEECCCCccCCCchhhhHHHHHHHHHcCCCChhhh
Q psy14338 1703 LVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLDPIYV 1757 (1761)
Q Consensus 1703 l~~~l~~~~Lp~~~~vP~~i~~v~~~~lP~t~~GKvdR~~L~~~~~~~~~~~~~~ 1757 (1761)
++++|+++.|| .||+|+.|++++ +||+|+|||+||++|++.+ ..+++++|.
T Consensus 488 l~~~l~~~~L~-~~~~P~~i~~v~--~lP~t~~GKi~r~~L~~~~-~~~i~~~y~ 538 (539)
T 1mdb_A 488 LKAFLRERGLA-AYKIPDRVEFVE--SFPQTGVGKVSKKALREAI-SEKLLAGFK 538 (539)
T ss_dssp HHHHHHHTTCC-GGGSCSEEEECS--SCCBCTTSCBCHHHHHHHH-HHHHHTC--
T ss_pred HHHHHHhCCCC-cccCCCEEEEec--cCCCCCCcCEeHHHHHHHH-HHHHhcccc
Confidence 99999984488 999999999999 9999999999999999988 455666664
No 30
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=9.5e-72 Score=716.34 Aligned_cols=471 Identities=19% Similarity=0.234 Sum_probs=380.4
Q ss_pred hhHHHHHHHHhhhcCC-CcEEEEECCCCceeEEEeHHHHHHHHHHHHHHhhcCCCCccccCCCCCCCEEEEEccCCCchh
Q psy14338 81 RNLEAAIQRYGSATYK-APVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPIN 159 (1761)
Q Consensus 81 ~~l~~~~~~~a~~~pd-~~Av~~~d~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~~~~~~Gv~~g~~V~l~~~~s~~~~ 159 (1761)
.++.++|.++++++|+ ++|+++.+ +++||+||+++++++|+.|+ . |++|+|+++|+ ++
T Consensus 22 ~tl~~~l~~~a~~~p~d~~Al~~~~------~~~Ty~eL~~~~~~~A~~L~--------~-----~~~V~i~~~~~--~~ 80 (505)
T 3nyq_A 22 SSLFPALSPAPTGAPADRPALRFGE------RSLTYAELAAAAGATAGRIG--------G-----AGRVAVWATPA--ME 80 (505)
T ss_dssp --CCTTTSSCCCSGGGGSEEEEETT------EEEEHHHHHHHHHHHHTTCC----------------CEEEECCSS--HH
T ss_pred chhHHHHHHHHHhCCCCCeEEEECC------eeeeHHHHHHHHHHHHhhcc--------C-----CCEEEEEcCCC--HH
Confidence 5678888889999987 99999865 79999999999999999887 2 78999999999 99
Q ss_pred HHHHHHHHHHhCCeEEecCCCCCcCccchhHHHHHHhcCCCcEEEEcccccccCcccccccceeccCCCcceeEEecccc
Q psy14338 160 FLCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKLTWFVTEHLA 239 (1761)
Q Consensus 160 ~vva~lAvlkaG~~~vpldp~~p~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (1761)
+++++|||+|+|+++|||||.+|.+ |+.+++++++++++|++..... ..... .......+.
T Consensus 81 ~~~~~la~~~~Ga~~vpl~~~~~~~-----~l~~il~~~~~~~vi~~~~~~~--~~~~~----------~~~~~~~~~-- 141 (505)
T 3nyq_A 81 TGVAVVAALLAGVAAVPLNPKSGDK-----ELAHILSDSAPSLVLAPPDAEL--PPALG----------ALERVDVDV-- 141 (505)
T ss_dssp HHHHHHHHHHHTCCEEEECTTCCHH-----HHHHHHHHHCCSEEEECTTCCC--CGGGT----------TSEEEECCT--
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCHH-----HHHHHHHHCCCCEEEECCcccc--chhhc----------ccccccccc--
Confidence 9999999999999999999999976 9999999999999999865211 10000 000000110
Q ss_pred CCCCCCCCCCCCCCCCcEEEEecCCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCCeEEEccCCcchhhhHHHHHHHHh
Q psy14338 240 KTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFKRETGLWHSVLTSVL 319 (1761)
Q Consensus 240 ~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~i~~~L~ 319 (1761)
......+.....++|+|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|..++...++.+|+
T Consensus 142 -~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~ 220 (505)
T 3nyq_A 142 -RARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLR 220 (505)
T ss_dssp -TCCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHH
T ss_pred -ccccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHh
Confidence 0111122344678999999999999999999999999999999999999999999999999999999887655899999
Q ss_pred cCcEEEEeCCccccCCHHHHHHHHHhcCceEEEecCHHHHHHhhcCCC---CCCCCCCceeEEEecCCCccCCHHHHHHH
Q psy14338 320 NGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKD---HKDISLSSLRLLLVGDGANPWSLSSCDQF 396 (1761)
Q Consensus 320 ~G~~lvi~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~~ll~~~~---~~~~~l~~Lr~v~~gg~Ge~l~~~~~~~~ 396 (1761)
.|+++++.+ .+++..+++.+ ++++|+++++| +++..++.... .....++++|.+++| |+++++++.++|
T Consensus 221 ~G~~~~~~~----~~~~~~~~~~i-~~~~t~~~~~P-~~~~~l~~~~~~~~~~~~~l~~lr~i~~g--g~~l~~~~~~~~ 292 (505)
T 3nyq_A 221 RGGSVRHLG----RFSTEGAAREL-NDGATMLFGVP-TMYHRIAETLPADPELAKALAGARLLVSG--SAALPVHDHERI 292 (505)
T ss_dssp HTCEEEECS----SCCHHHHHHHH-TTTCCEEEECH-HHHHHHHHHGGGCHHHHHHHHHCSEEEEC--SSCCCHHHHHHH
T ss_pred cCCEEEECC----CCChHHHHHHH-hhCCeEEEehH-HHHHHHHHhhhcCchhhcccccceEEEEC--CCCCCHHHHHHH
Confidence 999999998 78999999999 88999999996 47777665211 112346789999999 999999999999
Q ss_pred HHHhhhCCCCCCccccccccccccceEeecCCCCCcccCCCccccccCcccceeeecCCCccCcccccccCCCCCCcEEE
Q psy14338 397 LSVFQSKGLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQVMPGCIMT 476 (1761)
Q Consensus 397 ~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ 476 (1761)
.+.+ |.+ ++|.||+||++++++..... .....++|+|++|++++
T Consensus 293 ~~~~---~~~---~~~~YG~TE~~~~~~~~~~~------------------------------~~~~~~vG~p~~~~~~~ 336 (505)
T 3nyq_A 293 AAAT---GRR---VIERYGMTETLMNTSVRADG------------------------------EPRAGTVGVPLPGVELR 336 (505)
T ss_dssp HHHH---SCC---CEEEEEETTTEEEEECCTTS------------------------------CCCTTCCCEECTTCEEE
T ss_pred HHhc---CCe---eecccchhhcccccccCCCC------------------------------CCCCCCcccCCCCCEEE
Confidence 9987 543 99999999998766543311 12356899999999999
Q ss_pred EEeCCCCcccCCC---CCceEEEEecCCccccccCCCccccccccccccccCCCccCCCceEeecceEEEeCCCeEEEEe
Q psy14338 477 VVKMDSPSYLCKT---DEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGFLGPGGLVFVCG 553 (1761)
Q Consensus 477 I~d~~~~~~~~p~---G~~GEL~i~G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~~~~dG~l~~~G 553 (1761)
|+|+++++ +|. |++|||+|+|+++++||||+|++|+++|. .++||||||+|++++||.|+|+|
T Consensus 337 i~d~~g~~--~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~------------~~g~y~TGDl~~~~~dG~l~~~G 402 (505)
T 3nyq_A 337 LVEEDGTP--IAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFT------------EDGFFRTGDMAVRDPDGYVRIVG 402 (505)
T ss_dssp EC-----C--CCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBC------------TTSCEEEEEEEEECTTSCEEEEE
T ss_pred EECCCCCC--cccCCCCceEEEEEecCchhhhhCCChhHhhhhhc------------CCCCCccCCeEEECCCccEEEeC
Confidence 99999874 555 89999999999999999999999999995 37899999999999999999999
Q ss_pred cc-CCeEEECCcccChHHHHHHHHhcCCccccccceEEEEEEec-CCCceEEEEEEeCC---CCCHHHHHHHHHHHHHHh
Q psy14338 554 SR-DGLMTVTGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIRV-LRDERICVIAEQRP---DCSEEESFQWMSRVLQAV 628 (1761)
Q Consensus 554 R~-d~qvki~G~rIe~~eIE~~l~~~~~v~~~~~~~a~v~~~~~-~~~~~l~a~v~~~~---~~~~~~l~~~l~~~Lp~y 628 (1761)
|+ |+|||++|+||+|.|||++|.+++.| .+|+|++.++ ..++.++|++++.+ ..+.++++++|+++||.|
T Consensus 403 R~~d~~ik~~G~~v~~~eIE~~l~~~p~V-----~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~~l~~~l~~~L~~~ 477 (505)
T 3nyq_A 403 RKATDLIKSGGYKIGAGEIENALLEHPEV-----REAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAARLAPH 477 (505)
T ss_dssp ESSCCCEEETTEEECHHHHHHHHTTSTTE-----EEEEEEEEEETTTEEEEEEEEEESSTTSCCCHHHHHHHHHHHTCGG
T ss_pred CccCceEEeCCEEECHHHHHHHHHHCcCc-----cEEEEEeeECCCCCcEEEEEEEECCCCCCCCHHHHHHHHHhhCCCC
Confidence 98 69999999999999999999999888 7999999985 46789999999875 356789999999999999
Q ss_pred hhcceeeeeEEEEeCCCCccCCCCCcccHHHHHH
Q psy14338 629 DSIHQVGLYCLALVPPNYLPKTPLGGIHLSECKR 662 (1761)
Q Consensus 629 ~~P~~i~~~~v~~v~~~~lP~t~~GKidR~~L~~ 662 (1761)
|+|+.+ +.+++||+|+||||||++|++
T Consensus 478 ~~P~~i-------~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 478 KRPRVV-------RYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp GSCSEE-------EECSCCCC-------------
T ss_pred cCccEE-------EEECCCCCCCCcCeeHHhhcc
Confidence 999986 556999999999999999986
No 31
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=1.8e-71 Score=770.61 Aligned_cols=507 Identities=17% Similarity=0.254 Sum_probs=336.5
Q ss_pred chhHHHHHHHHhhhcCCCcEEEEECCCCceeEEEeHHHHHHHHHHHHHHhhcCCCCccccCCCCCCCEEEEEccCCCchh
Q psy14338 80 PRNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPIN 159 (1761)
Q Consensus 80 ~~~l~~~~~~~a~~~pd~~Av~~~d~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~~~~~~Gv~~g~~V~l~~~~s~~~~ 159 (1761)
..+++++|+++++++||++|+++.+. | +++||+||+++++++|+.|+ +.|+++||+|+|+++|| ++
T Consensus 60 ~~tl~~~l~~~a~~~pd~~Al~~~~~-~---~~~TY~eL~~~~~~lA~~L~--------~~Gv~~gd~V~i~~~ns--~e 125 (979)
T 3tsy_A 60 HLSLHDYIFQNISEFATKPCLINGPT-G---HVYTYSDVHVISRQIAANFH--------KLGVNQNDVVMLLLPNC--PE 125 (979)
T ss_dssp TSCHHHHHTTTGGGTTTSEEEEETTT-C---CEEEHHHHHHHHHHHHHHHH--------HTTCCTTCEEEEECSSC--HH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEECCC-C---cEEEHHHHHHHHHHHHHHHH--------HcCCCCcCEEEEEeCCC--HH
Confidence 36899999999999999999997532 2 58999999999999999999 89999999999999999 99
Q ss_pred HHHHHHHHHHhCCeEEecCCCCCcCccchhHHHHHHhcCCCcEEEEcccccccCcccccc---cceeccCCCc----cee
Q psy14338 160 FLCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAG---EVVAFKGWPK----LTW 232 (1761)
Q Consensus 160 ~vva~lAvlkaG~~~vpldp~~p~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~---~~~~~~~~~~----~~~ 232 (1761)
+++++|||+|+|+++||+||.+|.+ |+.+++++++++++|+++...+.+...... .++..+.... ...
T Consensus 126 ~~v~~lA~~~~Ga~~vpl~~~~~~~-----~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (979)
T 3tsy_A 126 FVLSFLAASFRGATATAANPFFTPA-----EIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGC 200 (979)
T ss_dssp HHHHHHHHHHHTCEEEEECTTSCHH-----HHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCTTSCCCTTE
T ss_pred HHHHHHHHHHcCCEEEeeCCCCCHH-----HHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcccccCCccc
Confidence 9999999999999999999999976 999999999999999998776555432111 1111111100 000
Q ss_pred EEeccccCCCC---CCCCCCCCCCCCcEEEEecCCCCCCceEEEEchHHHHHHHHHHHH----HcCCCCCCeEEEccCCc
Q psy14338 233 FVTEHLAKTPK---DWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQ----ACHYTEGENMVCVLDFK 305 (1761)
Q Consensus 233 ~~~~~~~~~~~---~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~ 305 (1761)
...+.+..... ...+.....++|+|||+|||||||+||||+++|+++++.+.+... .+++.++|++++++|++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 280 (979)
T 3tsy_A 201 LRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMF 280 (979)
T ss_dssp EEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSS
T ss_pred ccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchH
Confidence 01111111111 112234567899999999999999999999999999988876653 45688999999999999
Q ss_pred chhhhHHHHHHHHhcCcEEEEeCCccccCCHHHHHHHHHhcCceEEEecCHHHHHHhhcCCCCCCCCCCceeEEEecCCC
Q psy14338 306 RETGLWHSVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGA 385 (1761)
Q Consensus 306 ~~~~~~~~i~~~L~~G~~lvi~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~~ll~~~~~~~~~l~~Lr~v~~gg~G 385 (1761)
|++++...++.+|..|+++++.+ .+++..+++.|+++++|++.++| +++..++........++++||.+++| |
T Consensus 281 h~~~~~~~~~~~l~~G~~~v~~~----~~~~~~~~~~i~~~~~t~~~~~P-~~~~~l~~~~~~~~~~l~~lr~~~~g--g 353 (979)
T 3tsy_A 281 HIYALNSIMLCGLRVGAAILIMP----KFEINLLLELIQRCKVTVAPMVP-PIVLAIAKSSETEKYDLSSIRVVKSG--A 353 (979)
T ss_dssp SHHHHHHTHHHHHHHTCEEEECS----SCCHHHHHHHHHHHTCCEEEECH-HHHHHHHHCGGGGTSCCTTCCEEEES--S
T ss_pred HHHHHHHHHHHHHhcCcEEEEeC----CCCHHHHHHHHHHhCCeEEEcHH-HHHHHHHhCccccCCCccceEEEEEc--C
Confidence 99999766899999999999998 68999999999999999999996 48888887766666788999999999 9
Q ss_pred ccCCHHHHHHHHHHhhhCCCCCCccccccccccccceEeecCCCCCcccCCCccccccCcccceeeecCCCccCcccccc
Q psy14338 386 NPWSLSSCDQFLSVFQSKGLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQD 465 (1761)
Q Consensus 386 e~l~~~~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1761)
+++++++.++|.+.++. . .++|.||+||++.+++..... .........++
T Consensus 354 ~~l~~~~~~~~~~~~~~--~---~l~~~YG~TE~~~~~~~~~~~-------------------------~~~~~~~~~~~ 403 (979)
T 3tsy_A 354 APLGKELEDAVNAKFPN--A---KLGQGYGMTEAGPVLAMSLGF-------------------------AKEPFPVKSGA 403 (979)
T ss_dssp CCCCSSHHHHHHHHCTT--C---EEEECEECGGGCSEEEECGGG-------------------------SSSCCCCCTTC
T ss_pred CCCCHHHHHHHHHHCCC--C---eEEeeechhhhhHHHHhCCCC-------------------------CCCccccCCCC
Confidence 99999999999998853 2 599999999998766543210 00011234678
Q ss_pred cCCCCCCcEEEEEeCCCCcccCCCCCceEEEEecCCccccccCCCccccccccccccccCCCccCCCceEeecceEEEeC
Q psy14338 466 CGQVMPGCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGFLGP 545 (1761)
Q Consensus 466 iG~p~~~~~~~I~d~~~~~~~~p~G~~GEL~i~G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~~~~ 545 (1761)
+|+|++|++++|+|++.. .++|.|++|||+|+|+++++||||+|++|+++|. .++||||||+|++++
T Consensus 404 ~G~p~~~~~~~i~d~~~~-~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~------------~~g~~~TGDl~~~~~ 470 (979)
T 3tsy_A 404 CGTVVRNAEMKIVDPDTG-DSLSRNQPGEICIRGHQIMKGYLNNPAATAETID------------KDGWLHTGDIGLIDD 470 (979)
T ss_dssp CCEECSSCEEEEECTTSC-CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBC------------TTSCEEEEEEEEECT
T ss_pred cCcccCCcEEEEEeCCCC-CCCCCCCccEEEEECCCccccccCChhhhhhhcc------------CCCcEEcCCEEEEcC
Confidence 999999999999996533 2699999999999999999999999999999994 478999999999999
Q ss_pred CCeEEEEeccCCeEEECCcccChHHHHHHHHhcCCccccccceEEEEEEec-CCCceEEEEEEeCCC--CCHHHHHHHHH
Q psy14338 546 GGLVFVCGSRDGLMTVTGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIRV-LRDERICVIAEQRPD--CSEEESFQWMS 622 (1761)
Q Consensus 546 dG~l~~~GR~d~qvki~G~rIe~~eIE~~l~~~~~v~~~~~~~a~v~~~~~-~~~~~l~a~v~~~~~--~~~~~l~~~l~ 622 (1761)
||+|+|+||+|||||++|+||+|+|||++|.+++.| .+++|++.++ ..++.++||++..++ .+.++++++|+
T Consensus 471 dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V-----~~~~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~ 545 (979)
T 3tsy_A 471 DDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDI-----TDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVS 545 (979)
T ss_dssp TSCEEEEEESCC--------------------------------------------------------------------
T ss_pred CceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCc-----ceEEEEEecccCCCcEEEEEEEECCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999888 7999999885 467889999987554 57789999999
Q ss_pred HHHHHhhhcceeeeeEEEEeCCCCccCCCCCcccHHHHHHHHHcC
Q psy14338 623 RVLQAVDSIHQVGLYCLALVPPNYLPKTPLGGIHLSECKRRFLEG 667 (1761)
Q Consensus 623 ~~Lp~y~~P~~i~~~~v~~v~~~~lP~t~~GKidR~~L~~~~~~~ 667 (1761)
++||.||+|..+ +.+++||+|+||||||++|++.+.++
T Consensus 546 ~~l~~~~~p~~i-------~~v~~lP~t~~GKi~r~~L~~~~~~~ 583 (979)
T 3tsy_A 546 KQVVFYKRINKV-------FFTESIPKAPSGKILRKDLRAKLANG 583 (979)
T ss_dssp ---------------------------------------------
T ss_pred HhcccccCCeEE-------EEeCCcCcCCCCCeeHHHHHHHHHhh
Confidence 999999999986 66799999999999999999987653
No 32
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1e-70 Score=708.54 Aligned_cols=482 Identities=16% Similarity=0.147 Sum_probs=384.0
Q ss_pred hHHHHHHHHhhhcCCCcEEEEECCCCceeEEEeHHHHHHHHHHHHHHhhcCCCCccccCCCCCCCEEEEEccCCCchhHH
Q psy14338 82 NLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFL 161 (1761)
Q Consensus 82 ~l~~~~~~~a~~~pd~~Av~~~d~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~~~~~~Gv~~g~~V~l~~~~s~~~~~v 161 (1761)
+|.++|+++|+++||++|+++.+ +++||+||+++++++|+.|+ +. +||+|+|+++|+ ++++
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~~~------~~~Ty~eL~~~~~~lA~~L~--------~~---~gd~V~i~~~n~--~e~~ 62 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITDGQ------ESYTYQNLYCEASLLAKRLK--------AY---QQSRVGLYIDNS--IQSI 62 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEECSS------CEEEHHHHHHHHHHHHHHHH--------TT---CCSEEEEECCSS--HHHH
T ss_pred CHHHHHHHHHHhcCCceEEEeCC------cEEEHHHHHHHHHHHHHHHH--------Hc---CCCEEEEEcCCC--HHHH
Confidence 56788999999999999999755 58999999999999999999 54 899999999999 9999
Q ss_pred HHHHHHHHhCCeEEecCCCCCcCccchhHHHHHHhcCCCcEEEEcccccccCcccccc-cce---ec---cCC----Ccc
Q psy14338 162 CAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAG-EVV---AF---KGW----PKL 230 (1761)
Q Consensus 162 va~lAvlkaG~~~vpldp~~p~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~-~~~---~~---~~~----~~~ 230 (1761)
+++|||+++|+++||++|.++.+ ++.+++++++++++|++............. .+. .. ... ...
T Consensus 63 ~~~lA~~~~Gav~vpl~~~~~~~-----~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (501)
T 3ipl_A 63 ILIHACWLANIEIAMINTRLTPN-----EMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGI 137 (501)
T ss_dssp HHHHHHHHTTCEEEECCTTSCHH-----HHHHHHHHTTCCEEEESSCCCCTTSEEEETTC--------------------
T ss_pred HHHHHHHHcCCEEEecCccCCHH-----HHHHHHHhcCCCEEEEccccccccccccccccceeeeeeccccccccccccc
Confidence 99999999999999999999976 899999999999999998765443221100 000 00 000 000
Q ss_pred eeE--EeccccCCCCCCCCCCCCCCCCcEEEEecCCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCCeEEEccCCcchh
Q psy14338 231 TWF--VTEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFKRET 308 (1761)
Q Consensus 231 ~~~--~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 308 (1761)
.+. ...................++|+|||+|||||||+||||+++|+++.+.+.+....++++++|++++++|++|++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~ 217 (501)
T 3ipl_A 138 QYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHIS 217 (501)
T ss_dssp ------------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHH
T ss_pred ccccchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHH
Confidence 000 000000000001122345789999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhcCcEEEEeCCccccCCHHHHHHHHHhcCceEEEecCHHHHHHhhcCCCCCCCCCCceeEEEecCCCccC
Q psy14338 309 GLWHSVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGANPW 388 (1761)
Q Consensus 309 ~~~~~i~~~L~~G~~lvi~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~~ll~~~~~~~~~l~~Lr~v~~gg~Ge~l 388 (1761)
++.. ++.+++.|+++++.+ .+++..+++.|+++++|++.++| +++..++....... .+||.+++| |+++
T Consensus 218 g~~~-~~~~l~~G~~~~~~~----~~~~~~~~~~i~~~~~t~~~~~P-~~~~~l~~~~~~~~---~~lr~i~~g--G~~l 286 (501)
T 3ipl_A 218 GLSV-LLRAVIEGFTVRIVD----KFNAEQILTMIKNERITHISLVP-QTLNWLMQQGLHEP---YNLQKILLG--GAKL 286 (501)
T ss_dssp HHHH-HHHHHHHTCEEEECS----SCCHHHHHHHHHHSCCCEEEECH-HHHHHHHHHTCCSC---TTCCEEEEC--SSCC
T ss_pred HHHH-HHHHHHcCceEEeCC----CCCHHHHHHHHHHcCCcEEEchH-HHHHHHHhcCCCCc---CcccEEEEe--CCCC
Confidence 9986 999999999999998 68999999999999999999996 47777776543322 389999999 9999
Q ss_pred CHHHHHHHHHHhhhCCCCCCccccccccccccceEeecCCCCCcccCCCccccccCcccceeeecCCCccCcccccccCC
Q psy14338 389 SLSSCDQFLSVFQSKGLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQ 468 (1761)
Q Consensus 389 ~~~~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~ 468 (1761)
++++.++|.+. |++ ++|.||+||++..++..... .......++|+
T Consensus 287 ~~~~~~~~~~~----~~~---~~~~YG~TE~~~~~~~~~~~----------------------------~~~~~~~~~G~ 331 (501)
T 3ipl_A 287 SATMIETALQY----NLP---IYNSFGMTETCSQFLTATPE----------------------------MLHARPDTVGM 331 (501)
T ss_dssp CHHHHHHHHHT----TCC---EEEEEEEGGGTEEEEEECHH----------------------------HHHHCTTCCBE
T ss_pred CHHHHHHHHHh----CCC---EeccccccccccceeecCcc----------------------------ccccCCCCCCC
Confidence 99999999873 554 99999999998654432210 00123568999
Q ss_pred CCCCcEEEEEeCCCCcccCCCCCceEEEEecCCccccccCCCccccccccccccccCCCccCCCceEeecceEEEeCCCe
Q psy14338 469 VMPGCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGFLGPGGL 548 (1761)
Q Consensus 469 p~~~~~~~I~d~~~~~~~~p~G~~GEL~i~G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~~~~dG~ 548 (1761)
|+++++++|+|++ .|+.|||+|+|+++++||||+|+.|++ |. +|||||||+|++++||+
T Consensus 332 p~~~~~~~i~d~~-------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~-------------~g~~~TGDl~~~~~~G~ 390 (501)
T 3ipl_A 332 PSANVDVKIKNPN-------KEGHGELMIKGANVMNGYLYPTDLTGT-FE-------------NGYFNTGDIAEIDHEGY 390 (501)
T ss_dssp ECTTCEEEEESCC-------SSCCEEEEEESTTSCSCCSBSTTCCCS-EE-------------TTEEEEEEEEEECTTSC
T ss_pred CCCCcEEEEecCC-------CCCccEEEEeccchhhhhCcChhhcch-hc-------------CCceecCCEEEEcCCCe
Confidence 9999999999975 366799999999999999999999987 63 78999999999999999
Q ss_pred EEEEeccCCeEEECCcccChHHHHHHHHhcCCccccccceEEEEEEecC-CCceEEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy14338 549 VFVCGSRDGLMTVTGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIRVL-RDERICVIAEQRPDCSEEESFQWMSRVLQA 627 (1761)
Q Consensus 549 l~~~GR~d~qvki~G~rIe~~eIE~~l~~~~~v~~~~~~~a~v~~~~~~-~~~~l~a~v~~~~~~~~~~l~~~l~~~Lp~ 627 (1761)
++|+||+|||||++|+||+|.|||++|.++++| .+|+|++.++. .++.++++++.....+.++++++|+++||.
T Consensus 391 l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V-----~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~l~~~l~~~L~~ 465 (501)
T 3ipl_A 391 VMIYDRRKDLIISGGENIYPYQIETVAKQFPGI-----SDAVCVGHPDDTWGQVPKLYFVSESDISKAQLIAYLSKHLAK 465 (501)
T ss_dssp EEEEEECCCCEECSSCEECHHHHHHHHTTSTTE-----EEEEEEEEEETTTEEEEEEEEEESSCCCHHHHHHHHHHHSCG
T ss_pred EEEEccccceEEECCEEECHHHHHHHHHhCCCc-----cEEEEEEEecccCCceEEEEEEeCCCCCHHHHHHHHHhhCcc
Confidence 999999999999999999999999999998888 79999999854 578889999988888999999999999999
Q ss_pred hhhcceeeeeEEEEeCCCCccCCCCCcccHHHHHHHHHc
Q psy14338 628 VDSIHQVGLYCLALVPPNYLPKTPLGGIHLSECKRRFLE 666 (1761)
Q Consensus 628 y~~P~~i~~~~v~~v~~~~lP~t~~GKidR~~L~~~~~~ 666 (1761)
||+|..+ +.+++||+|+||||||++|++....
T Consensus 466 ~~~P~~i-------~~v~~lP~t~~GKi~R~~l~~~~~~ 497 (501)
T 3ipl_A 466 YKVPKHF-------EKVDTLPYTSTGKLQRNKLYREGHH 497 (501)
T ss_dssp GGSCSEE-------EECSSCC------------------
T ss_pred ccCCCEE-------EEecccCCCCCCCEeHHHHhhcccc
Confidence 9999986 5569999999999999999987643
No 33
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=1.8e-70 Score=724.78 Aligned_cols=514 Identities=15% Similarity=0.151 Sum_probs=411.6
Q ss_pred hhHHHHHHHHhhhcCCCcEEEEECCCCceeEEEeHHHHHHHHHHHHHHhhcCCCCccccCCCCCCCEEEEEccCCCchhH
Q psy14338 81 RNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINF 160 (1761)
Q Consensus 81 ~~l~~~~~~~a~~~pd~~Av~~~d~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~~~~~~Gv~~g~~V~l~~~~s~~~~~ 160 (1761)
.+++++|+++++++||++|+++.+.++...+++||+||+++++++|+.|++ +.|+++||+|+|+++|+ +++
T Consensus 82 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~-------~~Gv~~Gd~V~i~~~~~--~e~ 152 (663)
T 1ry2_A 82 NACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTY-------SMGVRKGDTVAVYMPMV--PEA 152 (663)
T ss_dssp CHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHH-------TSCCCTTCEEEECCCSS--HHH
T ss_pred cHHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHH-------hcCCCCCCEEEEEcCCC--HHH
Confidence 578999999999999999999864321122689999999999999999962 46799999999999999 999
Q ss_pred HHHHHHHHHhCCeEEecCCCCCcCccchhHHHHHHhcCCCcEEEEcccccccC-------------cccc-cccceeccC
Q psy14338 161 LCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGL-------------PKTA-AGEVVAFKG 226 (1761)
Q Consensus 161 vva~lAvlkaG~~~vpldp~~p~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~-------------~~~~-~~~~~~~~~ 226 (1761)
++++|||+++|++++|++|.++.+ ++.++++++++++||+++...... .... ...++.+..
T Consensus 153 v~a~lA~~~~Gav~vpl~~~~~~~-----~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~ 227 (663)
T 1ry2_A 153 IITLLAISRIGAIHSVVFAGFSSN-----SLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRK 227 (663)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHH-----HHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECS
T ss_pred HHHHHHHHHcCCEEEeeCCCCCHH-----HHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEec
Confidence 999999999999999999999976 899999999999999987653211 0000 011111111
Q ss_pred CC--cc------eeEEeccccCCCCCCCCCCCCCCCCcEEEEecCCCCCCceEEEEchHHHHHHHH-HHHHHcCCCCCCe
Q psy14338 227 WP--KL------TWFVTEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCR-ALTQACHYTEGEN 297 (1761)
Q Consensus 227 ~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~ 297 (1761)
.. .. .....+.... .....+.....++|++||+|||||||+||||+++|++++..+. .....++++++|+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~ 306 (663)
T 1ry2_A 228 TNNPSVAFHAPRDLDWATEKKK-YKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDV 306 (663)
T ss_dssp SCCSSCCCCSSSEEEHHHHHTT-SCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCE
T ss_pred CCCCccccCCCccccHHHHHhh-cCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcE
Confidence 00 00 0000111111 1111223345789999999999999999999999999887664 4556789999999
Q ss_pred EEEccCCcchhhhHHHHHHHHhcCcEEEEeCCccccCCHHHHHHHHHhcCceEEEecCHHHHHHhhcCCC--CCCCCCCc
Q psy14338 298 MVCVLDFKRETGLWHSVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKD--HKDISLSS 375 (1761)
Q Consensus 298 ~l~~~~~~~~~~~~~~i~~~L~~G~~lvi~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~~ll~~~~--~~~~~l~~ 375 (1761)
+++++|++|+++....++.+|++|+++++.+.....+++..+++.|++++||+++++| +++..++.... ....++++
T Consensus 307 ~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P-s~~~~l~~~~~~~~~~~~l~s 385 (663)
T 1ry2_A 307 FFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAP-TALRLLKRAGDSYIENHSLKS 385 (663)
T ss_dssp EEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECH-HHHHHHTTSCTTSSSSCCCTT
T ss_pred EEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecH-HHHHHHHhcCccccccCCcCc
Confidence 9999999999998435899999999999997432236899999999999999999986 57777776543 34567899
Q ss_pred eeEEEecCCCccCCHHHHHHHHHHhhhCCCCCCccccccccccccceEeecCCCCCcccCCCccccccCcccceeeecCC
Q psy14338 376 LRLLLVGDGANPWSLSSCDQFLSVFQSKGLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQE 455 (1761)
Q Consensus 376 Lr~v~~gg~Ge~l~~~~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 455 (1761)
||.+++| ||++++++.++|.+.++..++ .++|.||+||++..++.....
T Consensus 386 Lr~i~~g--Ge~l~~~~~~~~~~~~g~~~~---~i~~~YG~TE~~~~~~~~~~~-------------------------- 434 (663)
T 1ry2_A 386 LRCLGSV--GEPIAAEVWEWYSEKIGKNEI---PIVDTYWQTESGSHLVTPLAG-------------------------- 434 (663)
T ss_dssp CCEEEEC--SSCCCHHHHHHHHHTTSCSSS---CEEECBCCTTTCSCSEECCTT--------------------------
T ss_pred eEEEEEE--cCCCCHHHHHHHHHHhCCCCc---eEEEeECCccccCeeeccCCC--------------------------
Confidence 9999999 999999999999988731113 499999999998654432210
Q ss_pred CccCcccccccCCCCCCcEEEEEeC-CCCcccCCC-CCceEEEEec--CCccccccCCCccccccccccccccCCCccCC
Q psy14338 456 NSLTSLTLQDCGQVMPGCIMTVVKM-DSPSYLCKT-DEVGEICVAS--TGTGSQYWGLPGLSNTTFKVTPLLADGTALSQ 531 (1761)
Q Consensus 456 ~~~~~~~~~~iG~p~~~~~~~I~d~-~~~~~~~p~-G~~GEL~i~G--~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~ 531 (1761)
.....+.+++|+|++|++++|+|+ +++ ++|. |+.|||+|+| |++++||||+|+.|.+.|... .
T Consensus 435 -~~~~~~~gs~G~p~~g~~v~i~d~~~g~--~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~----------~ 501 (663)
T 1ry2_A 435 -GVTPMKPGSASFPFFGIDAVVLDPNTGE--ELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNP----------Y 501 (663)
T ss_dssp -TCCCCCTTCCCEECTTCCEEEECSSSTT--CEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSS----------S
T ss_pred -CCcccCCCccccCcCCCeEEEEcCCCCC--cCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcC----------C
Confidence 001234678999999999999999 776 4777 9999999999 589999999999999888521 2
Q ss_pred CceEeecceEEEeCCCeEEEEeccCCeEEECCcccChHHHHHHHHhcCCccccccceEEEEEEecC-CCceEEEEEEeCC
Q psy14338 532 DTYTRSGLLGFLGPGGLVFVCGSRDGLMTVTGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIRVL-RDERICVIAEQRP 610 (1761)
Q Consensus 532 ~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rIe~~eIE~~l~~~~~v~~~~~~~a~v~~~~~~-~~~~l~a~v~~~~ 610 (1761)
+|||||||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+++.| .+|+|++.++. .++.++|||++.+
T Consensus 502 ~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V-----~ea~Vvg~~~~~~g~~~~a~Vv~~~ 576 (663)
T 1ry2_A 502 PGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIV-----AECAVVGFNDDLTGQAVAAFVVLKN 576 (663)
T ss_dssp TTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTE-----EEEEEECCCCCTTSCCCEEEEEEC-
T ss_pred CCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCc-----ceEEEEEEecCCCCeEEEEEEEEcC
Confidence 68999999999999999999999999999999999999999999998887 79999999854 6788999999875
Q ss_pred CCC------------HHHHHHHHHHHHHHhhhcceeeeeEEEEeCCCCccCCCCCcccHHHHHHHHHc
Q psy14338 611 DCS------------EEESFQWMSRVLQAVDSIHQVGLYCLALVPPNYLPKTPLGGIHLSECKRRFLE 666 (1761)
Q Consensus 611 ~~~------------~~~l~~~l~~~Lp~y~~P~~i~~~~v~~v~~~~lP~t~~GKidR~~L~~~~~~ 666 (1761)
+.. .++++++|+++||.||+|..| +.+++||+|+||||+|++|++.+..
T Consensus 577 ~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i-------~~v~~lP~T~sGKi~R~~L~~~~~~ 637 (663)
T 1ry2_A 577 KSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLI-------ILVDDLPKTRSGKIMRRILRKILAG 637 (663)
T ss_dssp -----------CCSHHHHHHHHHHHHTCTTTSCSEE-------EECSCCCBCTTSCBCHHHHHHSCC-
T ss_pred CCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEE-------EEcCCCCCCCccCchHHHHHHHHcC
Confidence 422 468999999999999999986 5569999999999999999987653
No 34
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=2.2e-71 Score=721.85 Aligned_cols=506 Identities=16% Similarity=0.213 Sum_probs=381.6
Q ss_pred cccccccccccccCCCCcCCCCCCCceEEccCC---CCceeeCHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCHHH
Q psy14338 1161 YARTGYLGFLRRTSPAGVAGAPVPPGVSSVDTR---SAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDL 1237 (1761)
Q Consensus 1161 ~~~~~~~~~~~~~~~~~a~~~P~~~Av~~~d~~---~~~~~lTY~eL~~~a~~lA~~L~~~~Gv~~gd~V~i~~~~s~~~ 1237 (1761)
+..++++.|.+++. ++||++|+++.+.. ...+++||+||+++++++|++|++. |+++||+|+|+++|++++
T Consensus 17 ~~~~l~~~l~~~a~-----~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-Gv~~gd~V~i~~~~~~~~ 90 (549)
T 3g7s_A 17 PKISLADRIDAAAE-----KFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRK-GVRKGEHVGVCIPNSIDY 90 (549)
T ss_dssp CCCCTTHHHHHHHH-----HHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHT-TCCTTCEEEEECCSSHHH
T ss_pred CCCCHHHHHHHHHH-----hCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCHHH
Confidence 45677888877765 67999999965421 2238999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHcCCEEEeCCCCCCCCccCChHHHHHHHHhcCCeEEEechhHHHHHhhhcccccc----cc----ccCCccc
Q psy14338 1238 ICAFYGCLYVGAVPVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVV----DI----KSWPTIL 1309 (1761)
Q Consensus 1238 iva~lA~l~aG~~~vpldp~~P~~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~----~~----~~~~~~~ 1309 (1761)
++++|||+++|+++|||||.+|.+ ++.+++++++++++|++......+........+ .. ..+....
T Consensus 91 ~~~~lA~~~~G~~~vpl~~~~~~~------~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (549)
T 3g7s_A 91 VMTIYALWRVAATPVPINPMYKSF------ELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGGEVNSLSEVM 164 (549)
T ss_dssp HHHHHHHHHTTCEEEECCTTCCHH------HHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETCSSSCHHHHH
T ss_pred HHHHHHHHHhCCEEEccCCCCCHH------HHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCCCCcCHHHHH
Confidence 999999999999999999988887 999999999999999998876655443221100 00 0000000
Q ss_pred cCCCCccchhhhccCCCCC-CCEEEEEeccCCCCCCceEEccHHHHHHHHHHHHHHcCcCCCCeEEEEeCCccChhHHHH
Q psy14338 1310 DTDDMPKKKLAALYRAPTA-EMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALW 1388 (1761)
Q Consensus 1310 ~~~~~~~~~~~~~~~~~~~-~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 1388 (1761)
.... .........+ +++|||+|||||||+||||+++|+++.+.+.+....+++.++|+++.++|++|..++..
T Consensus 165 ~~~~-----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~- 238 (549)
T 3g7s_A 165 DSGS-----EDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGL- 238 (549)
T ss_dssp HHSC-----SCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHH-
T ss_pred hcCc-----cccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHH-
Confidence 0000 0001122334 89999999999999999999999999999999999999999999999999998888744
Q ss_pred HHHHhhcCceEEEeCCCccccCHHHHHHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCCCCCcceEEEeecCCCC
Q psy14338 1389 VLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERP 1468 (1761)
Q Consensus 1389 ~~~~L~~G~~~vl~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~~l~~Lr~v~~gGe~l~ 1468 (1761)
++.++..|+++++.+. +++..+++.|+++++|+++++|+++..|++... ......++++||.+++||++++
T Consensus 239 ~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----~~~~~~~~~~lr~~~~gg~~l~ 309 (549)
T 3g7s_A 239 VNLMVTVGNEYVVMGM----FNQEMLAENIEKYKGTFSWAVPPALNVLVNTLE-----SSNKTYDWSYLKVFATGAWPVA 309 (549)
T ss_dssp HTTHHHHCCEEEEESS----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHH-----HSCCCCCCTTCCEEEEESSCCC
T ss_pred HHHHHhcCceEEEcCC----CCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhh-----hhcccCCccceeEEEeCCccCC
Confidence 8889999999999884 799999999999999999999999999987431 1122367899999999999999
Q ss_pred hHHHHHHHHHHHh-hCCCCCccccccccccccceeeecCCCCCCCceeEecccccccCcceecccCCCCccceecccccc
Q psy14338 1469 RIHLTSAFSKLFS-ALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLL 1547 (1761)
Q Consensus 1469 ~~~l~~~~~~~~~-~~g~~e~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~ 1547 (1761)
+ .+.+++.+.+. .+|.....+++.||+||++.+++...... .....++|+|+
T Consensus 310 ~-~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~--------------------------~~~~~~~G~p~ 362 (549)
T 3g7s_A 310 P-ALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR--------------------------LDKSTTQGVPM 362 (549)
T ss_dssp H-HHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGG--------------------------GGGTTSCCEEC
T ss_pred H-HHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccc--------------------------cCcCCCccccC
Confidence 9 78888877632 23544478999999999876654322100 01234599999
Q ss_pred CCcEEEEEcCCCCCCCCCCcceEEEEcCCcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEeccCCCCCC
Q psy14338 1548 PGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVA 1627 (1761)
Q Consensus 1548 ~~~~~~v~d~~~~~~~p~G~~GEL~i~g~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~~~~~d~d 1627 (1761)
+|++++|+|+++++++|.|++|||+|+|+++++|||| +|+.|+++|..++ ++.+||||||+|++ |+|
T Consensus 363 ~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~---~~~~t~~~f~~~~----~g~~~~~TGDl~~~------~~d 429 (549)
T 3g7s_A 363 SDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWK---REKENQECWWYDE----KGRKFFRTGDVGFI------DEE 429 (549)
T ss_dssp TTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETT---CTTGGGTSEEECT----TCCEEEEEEEEEEE------CTT
T ss_pred CCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCC---ChhhhhhhhhccC----CCCceEccCcEEEE------cCC
Confidence 9999999997779999999999999999999999999 9999999996433 45679999999999 999
Q ss_pred CCCCCCCCCcccceEEEEcccCCeEEeCCeecChHHHHHHHHHhccCcceeEEEee-----CCeEEEEEEeCC---Cchh
Q psy14338 1628 GAPVPPGVSKLHDAVFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELDG---NESE 1699 (1761)
Q Consensus 1628 ~~~~~~g~G~~~~~l~~~GR~dd~Iki~G~rI~~~eIE~~~l~~~p~V~~a~Vv~~-----~~~~~a~v~~~~---~~~~ 1699 (1761)
|+ |+|+||+|||||++|+||+|.|||+ +|.+||+|.+|+|++. ++.++++|+... ...+
T Consensus 430 --------G~----l~~~GR~dd~ik~~G~~v~p~eIE~-~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~ 496 (549)
T 3g7s_A 430 --------GF----LHFQDRVKEVIKYKGYTIAPFELEA-LLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVD 496 (549)
T ss_dssp --------SC----EEEEEEC------------CHHHHH-HHTTSTTEEEEEEECCCC------CEEEEEECSTTTTSCC
T ss_pred --------ce----EEEeccccceEEECCEEECHHHHHH-HHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccCcCC
Confidence 99 9999999999999999999999999 8999999999999974 346788888753 3567
Q ss_pred HhhHHHHHHHHHhhhcCceeeEEEEECCCCccCCCchhhhHHHHHHHHHcC
Q psy14338 1700 ALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 1750 (1761)
Q Consensus 1700 ~~~l~~~l~~~~Lp~~~~vP~~i~~v~~~~lP~t~~GKvdR~~L~~~~~~~ 1750 (1761)
.++|+++|+++ || .||+|+.|++++ +||+|+||||||++|++.+...
T Consensus 497 ~~~l~~~l~~~-L~-~~~~P~~i~~v~--~lP~t~~GKi~R~~L~~~~~~~ 543 (549)
T 3g7s_A 497 EEDIIEWVRER-IS-GYKRVREVEFVE--ELPRTASGKLLRRLLREKEAEG 543 (549)
T ss_dssp HHHHHHHHHTT-CC------CCCCEEE--ECC-------------------
T ss_pred HHHHHHHHHHh-cc-CcccceEEEEec--cCCCCCCcCEeHHHHHHHhhcc
Confidence 78999999997 98 999999999999 9999999999999999988554
No 35
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=2.6e-70 Score=720.96 Aligned_cols=492 Identities=15% Similarity=0.177 Sum_probs=406.0
Q ss_pred ccccccccccccCCCCcCCCCCCCceEEccCCCCceeeCHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCHHHHHHH
Q psy14338 1162 ARTGYLGFLRRTSPAGVAGAPVPPGVSSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAF 1241 (1761)
Q Consensus 1162 ~~~~~~~~~~~~~~~~a~~~P~~~Av~~~d~~~~~~~lTY~eL~~~a~~lA~~L~~~~Gv~~gd~V~i~~~~s~~~iva~ 1241 (1761)
+.++++.|.+++. ||++|++ ++++++||+||+++++++|++|++. |+++||+|+|+++||+++++++
T Consensus 26 ~~~l~~~~~~~a~-------pd~~Av~-----~~~~~lTY~eL~~~a~~lA~~L~~~-Gv~~gd~V~l~~~~s~~~vva~ 92 (617)
T 3rg2_A 26 DLPLTDILTRHAA-------SDSIAVI-----DGERQLSYRELNQAADNLACSLRRQ-GIKPGETALVQLGNVAELYITF 92 (617)
T ss_dssp CCCTTHHHHTTTT-------CCSEEEE-----ETTEEEEHHHHHHHHHHHHHHHHHT-TCCTTCEEEEECCSSHHHHHHH
T ss_pred cCCHHHHHHHhhC-------CCCeEEe-----cCCceEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCcHHHHHHH
Confidence 4577888877764 9999999 7889999999999999999999999 9999999999999999999999
Q ss_pred HHHHHcCCEEEeCCCCCCCCccCChHHHHHHHHhcCCeEEEechhHH--------HHHh-hhccccccccccCCccccCC
Q psy14338 1242 YGCLYVGAVPVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVI--------KLLK-SKEASNVVDIKSWPTILDTD 1312 (1761)
Q Consensus 1242 lA~l~aG~~~vpldp~~P~~~~~~~~rl~~il~~~~~~~vl~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~~~ 1312 (1761)
|||+|+|+++||+||.+|.+ ++.++++++++++++++.... ..+. .......+............
T Consensus 93 lA~l~aG~~~vpl~~~~~~~------~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (617)
T 3rg2_A 93 FALLKLGVAPVLALFSHQRS------ELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQ 166 (617)
T ss_dssp HHHHHHTCEEEEECTTCCHH------HHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCSTTBHH
T ss_pred HHHHhcCeEEccCCccccHH------HHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccccchh
Confidence 99999999999999998888 999999999999999986532 1111 11110000000000000000
Q ss_pred CC-ccchhhhccCCCCCCCEEEEEeccCCCCCCceEEccHHHHHHHHHHHHHHcCcCCCCeEEEEeCCccChhHHH-HHH
Q psy14338 1313 DM-PKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFAL-WVL 1390 (1761)
Q Consensus 1313 ~~-~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~ 1390 (1761)
.. .............++++|||+|||||||+||||+++|+++++.+.+....+++.++|+++.++|++|.+++.. +++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~ 246 (617)
T 3rg2_A 167 DAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSL 246 (617)
T ss_dssp HHHHSCCSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHH
T ss_pred hhhcccccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHH
Confidence 00 0000011123456799999999999999999999999999999999999999999999999999988888754 689
Q ss_pred HHhhcCceEEEeCCCccccCHHHHHHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCCCCCcceEEEeecCCCChH
Q psy14338 1391 SSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRI 1470 (1761)
Q Consensus 1391 ~~L~~G~~~vl~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~~l~~Lr~v~~gGe~l~~~ 1470 (1761)
.+|+.|+++++.++ .++..+++.|+++++|+++++|+++..+++.... .....++++||.+++|||++++
T Consensus 247 ~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----~~~~~~l~~lr~i~~gGe~l~~- 316 (617)
T 3rg2_A 247 GVFLAGGTVVLAAD----PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIE-----GESRAQLASLKLLQVGGARLSA- 316 (617)
T ss_dssp HHHHHTCEEEECSS----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHT-----TCCTTTTTTCCEEEEESSCCCH-
T ss_pred HHHHcCCEEEEeCC----CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhc-----ccccccCCCccEEEEcCCcCCH-
Confidence 99999999999875 6899999999999999999999999999875321 1233478999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCccccccccccccceeeecCCCCCCCceeEecccccccCcceecccCCCCccceecccccc-CC
Q psy14338 1471 HLTSAFSKLFSALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLL-PG 1549 (1761)
Q Consensus 1471 ~l~~~~~~~~~~~g~~e~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~-~~ 1549 (1761)
.+.++|.+.++ +.++|.||+||++..+..... .......++|+|+ ++
T Consensus 317 ~~~~~~~~~~~------~~~~~~YG~tE~~~~~~~~~~--------------------------~~~~~~~~~G~p~~~~ 364 (617)
T 3rg2_A 317 TLAARIPAEIG------CQLQQVFGMAEGLVNYTRLDD--------------------------SAEKIIHTQGYPMCPD 364 (617)
T ss_dssp HHHHHHHHHTC------SEEEEEEEETTEEEEECCTTS--------------------------CHHHHHHCCCEESCTT
T ss_pred HHHHHHHHHhC------CcEEEEeccCcceeecccCCC--------------------------cccccccCCCccCCCC
Confidence 78888877653 689999999998754332110 0011234689998 78
Q ss_pred cEEEEEcCCCCCCCCCCcceEEEEcCCcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEeccCCCCCCCC
Q psy14338 1550 VKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVAGA 1629 (1761)
Q Consensus 1550 ~~~~v~d~~~~~~~p~G~~GEL~i~g~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~~~~~d~d~~ 1629 (1761)
++++|+|++ ++++|.|++|||||+|+++++|||| +|++|+++| ..++||||||+|++ ++|
T Consensus 365 ~~~~i~d~~-~~~~p~G~~GEl~i~G~~v~~GY~~---~p~~t~~~f--------~~~~~yrTGDl~~~------~~d-- 424 (617)
T 3rg2_A 365 DEVWVADAE-GNPLPQGEVGRLMTRGPYTFRGYYK---SPQHNASAF--------DANGFYCSGDLISI------DPE-- 424 (617)
T ss_dssp CEEEEECTT-SCBCCTTCCEEEEEECSSSCSCCTT---CHHHHHHHB--------CTTSCEEEEEEEEE------CTT--
T ss_pred ceEEEECCC-CCCCCCCCceEEEecCccccchhcC---Chhhhhhcc--------CCCCceecCceEEE------cCC--
Confidence 899999955 8999999999999999999999999 999999999 35789999999999 999
Q ss_pred CCCCCCCcccceEEEEcccCCeEEeCCeecChHHHHHHHHHhccCcceeEEEee-----CCeEEEEEEeCCCchhHhhHH
Q psy14338 1630 PVPPGVSKLHDAVFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELDGNESEALDLV 1704 (1761)
Q Consensus 1630 ~~~~g~G~~~~~l~~~GR~dd~Iki~G~rI~~~eIE~~~l~~~p~V~~a~Vv~~-----~~~~~a~v~~~~~~~~~~~l~ 1704 (1761)
|+ |+|+||+|||||++|+||+|+|||+ +|.+||+|.+|+|++. ++.++++++... ..+.++++
T Consensus 425 ------G~----l~~~GR~dd~iki~G~ri~~~eIE~-~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~-~~~~~~l~ 492 (617)
T 3rg2_A 425 ------GY----ITVQGREKDQINRGGEKIAAEEIEN-LLLRHPAVIYAALVSMEDELMGEKSCAYLVVKE-PLRAVQVR 492 (617)
T ss_dssp ------SC----EEEEEECSSEEEETTEEEEHHHHHH-HHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS-CCCHHHHH
T ss_pred ------ce----EEEEeecCCEEEECCEEeCHHHHHH-HHHhCCCeeEEEEEeccCcccCeeEEEEEEeCC-CCCHHHHH
Confidence 99 9999999999999999999999999 8999999999999974 457888888764 46678899
Q ss_pred HHHHHHHhhhcCceeeEEEEECCCCccCCCchhhhHHHHHHHHHc
Q psy14338 1705 PLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 1749 (1761)
Q Consensus 1705 ~~l~~~~Lp~~~~vP~~i~~v~~~~lP~t~~GKvdR~~L~~~~~~ 1749 (1761)
++++++.|| .||+|+.|++++ +||+|+|||+||++|++.+.+
T Consensus 493 ~~l~~~~lp-~~~vP~~~~~v~--~lP~t~~GKidR~~L~~~~~~ 534 (617)
T 3rg2_A 493 RFLREQGIA-EFKLPDRVECVD--SLPLTAVGKVDKKQLRQWLAS 534 (617)
T ss_dssp HHHHTTTCC-GGGSCSEEEECS--CCCBCTTSSBCHHHHHHHHHH
T ss_pred HHHHhCCCc-cccCCcEEEEec--ccCCCCCCCCcHHHHHHHHhc
Confidence 999984488 999999999999 999999999999999998743
No 36
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=7.7e-72 Score=728.94 Aligned_cols=488 Identities=20% Similarity=0.232 Sum_probs=323.0
Q ss_pred ccccccccccccCCCCcCCCCCCCceEEccCCCCceeeCHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCHHHHHHH
Q psy14338 1162 ARTGYLGFLRRTSPAGVAGAPVPPGVSSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAF 1241 (1761)
Q Consensus 1162 ~~~~~~~~~~~~~~~~a~~~P~~~Av~~~d~~~~~~~lTY~eL~~~a~~lA~~L~~~~Gv~~gd~V~i~~~~s~~~iva~ 1241 (1761)
..++++.|.+++. ++||++|++ ++++++||+||+++++++|++|++. |+++||+|+|+++|++++++++
T Consensus 74 ~~~l~~~l~~~a~-----~~pd~~A~~-----~~~~~~Ty~el~~~~~~lA~~L~~~-Gv~~gd~V~i~~~n~~~~~~~~ 142 (570)
T 4gr5_A 74 GACVHELFEAQAA-----RAPDAVALL-----HEADELTYGALNERANRLAHRLVGL-GVAPGTLVGVHLERGFDMVVAL 142 (570)
T ss_dssp SCCHHHHHHHHHH-----HCTTSEEEE-----ETTEEEEHHHHHHHHHHHHHHHHHT-TCCTTCEEEEECCSSHHHHHHH
T ss_pred cCCHHHHHHHHHH-----HCCCCeEEE-----CCCCcEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCCHHHHHHH
Confidence 4678888888776 779999999 6788999999999999999999999 9999999999999999999999
Q ss_pred HHHHHcCCEEEeCCCCCCCCccCChHHHHHHHHhcCCeEEEechhHHHHHhhhccccccccccCCccccCCCCccchhhh
Q psy14338 1242 YGCLYVGAVPVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDMPKKKLAA 1321 (1761)
Q Consensus 1242 lA~l~aG~~~vpldp~~P~~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1321 (1761)
|||+++|+++|||+|.+|.+ ++.+++++++++++|++......+..... +... . ..........
T Consensus 143 lA~~~~G~~~vpl~~~~~~~------~l~~~l~~~~~~~~i~~~~~~~~~~~~~~---~~~~---~----~~~~~~~~~~ 206 (570)
T 4gr5_A 143 LAVLKAGGGYTMLDPQFPVE------RLALSLEDTGAPLLVTSRPLSGRLTGTTT---LYVE---D----EAASDAPAGN 206 (570)
T ss_dssp HHHHHTTCEEEECCTTSCHH------HHHHHHHHHTCSEEEECTTTTTSSCSSEE---EECC---C-----------CCC
T ss_pred HHHHHHCCEEEEcCCCChHH------HHHHHHHhcCCCEEEecchhhhcccCCcc---eeee---c----cccccccccc
Confidence 99999999999999988777 99999999999999999765332221110 0000 0 0000001111
Q ss_pred ccCCCCCCCEEEEEeccCCCCCCceEEccHHHHHHHHHHHHHHcCcCCCCeEEEEeCCccChhHHHHHHHHhhcCceEEE
Q psy14338 1322 LYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSIL 1401 (1761)
Q Consensus 1322 ~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~L~~G~~~vl 1401 (1761)
......++++|||+|||||||.||||+++|+++.+.+.. ...+++.++|+++.++|++|+.+. +.++.+|+.|+++++
T Consensus 207 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~ 284 (570)
T 4gr5_A 207 LATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFG-LELFGALLFGARCVL 284 (570)
T ss_dssp CCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHH-HHHHHHHTTTCEEEE
T ss_pred cCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHH-HHHHHHHhcCCEEEE
Confidence 223467899999999999999999999999999877655 455678888999888888887655 678999999999999
Q ss_pred eCCCccccCHHHHHHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCCCCCcceEEEeecCCCChHHHHHHHHHHHh
Q psy14338 1402 IPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFS 1481 (1761)
Q Consensus 1402 ~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~~l~~Lr~v~~gGe~l~~~~l~~~~~~~~~ 1481 (1761)
.+.. .+++..+++.|+++++|+++++|+++..|++.. ..++++||.+++|||++++ .+.+++.+.++
T Consensus 285 ~~~~--~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~----------~~~~~~lr~~~~gG~~l~~-~~~~~~~~~~~ 351 (570)
T 4gr5_A 285 QSGQ--NPDPLEIGELVARHGVTMLQLSASLFNFLVDEV----------PEAFEGVRYAITGGEPASV-PHVAKARRDHP 351 (570)
T ss_dssp CSSS--SCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC----------GGGGTTCSEEEEESSCCCH-HHHHHHHHHCT
T ss_pred cCCc--cCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhc----------hhhCCCceEEEEecccCCH-HHHHHHHHhCC
Confidence 8753 479999999999999999999999999997642 2357899999999999998 67777777654
Q ss_pred hCCCCCccccccccccccceeeecCCCCCCCceeEecccccccCcceecccCCCCccceeccccccCCcEEEEEcCCCCC
Q psy14338 1482 ALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLPGVKVIIANPETKG 1561 (1761)
Q Consensus 1482 ~~g~~e~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~ 1561 (1761)
. ..+++.||+||++++++..... .. .......++|+|++|++++|+|++ ++
T Consensus 352 ~-----~~l~~~YG~TE~~~~~~~~~~~---------~~--------------~~~~~~~~iG~p~~~~~v~i~d~~-~~ 402 (570)
T 4gr5_A 352 A-----LRLGNGYGPAESMGFTTHHAVV---------AG--------------DLSGTALPIGVPLAGKRAYVLDDD-LK 402 (570)
T ss_dssp T-----CEEEEEECCGGGCSCSEEEECC---------GG--------------GTTSSSCCCBEECTTEEEEEECTT-SC
T ss_pred C-----cEEEEeechhhheeeeeeeeec---------cc--------------ccCCCccccceeeCCCEEEEECCC-CC
Confidence 2 6899999999986543321100 00 001123469999999999999965 89
Q ss_pred CCCCCcceEEEEcCCcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEeccCCCCCCCCCCCCCCCcccce
Q psy14338 1562 QCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDA 1641 (1761)
Q Consensus 1562 ~~p~G~~GEL~i~g~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~~~~~d~d~~~~~~g~G~~~~~ 1641 (1761)
++|.|++|||+|+|+++++|||| +|++|+++|..+||.+.+++|||||||+|++ |+| |+
T Consensus 403 ~~~~G~~GEl~v~g~~v~~GY~~---~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~------d~d--------G~---- 461 (570)
T 4gr5_A 403 PAANGALGELYVAGAGLAHGYVS---RPALTAERFVADPFAGPGGERMYRTGDLARR------RAD--------GV---- 461 (570)
T ss_dssp BCCTTCEEEEEEEETTCCCEETT---CHHHHHHHEEECTTCCSSCCEEEEEEEEEEE------CTT--------SC----
T ss_pred CCCCCCcEEEEEeecccchhcCC---CchhhhcccccCCCCCCCCCEEEeCCCeEEE------CCC--------Ce----
Confidence 99999999999999999999999 9999999999999987778899999999999 999 99
Q ss_pred EEEEcccCCeEEeCCeecChHHHHHHHHHhccCcceeEEEee-----CCeEEEEEEeCC--CchhHhhHHHHHHHHHhhh
Q psy14338 1642 VFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELDG--NESEALDLVPLVTNAVLEE 1714 (1761)
Q Consensus 1642 l~~~GR~dd~Iki~G~rI~~~eIE~~~l~~~p~V~~a~Vv~~-----~~~~~a~v~~~~--~~~~~~~l~~~l~~~~Lp~ 1714 (1761)
|+|+||+|||||++|+||+|.|||+ +|.+||+|.+|+|++. ++.++++|+... ...+.++|+++|+++ ||
T Consensus 462 l~~~GR~~d~Ik~~G~~v~p~eIE~-~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~l~~~l~~~-l~- 538 (570)
T 4gr5_A 462 LEYVGRADDQVKIRGFRVEPGEVEA-RLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDAAELRRHVAEA-LP- 538 (570)
T ss_dssp EEEEEC--------------------------------------------------------------------------
T ss_pred EEEEcccCCEEEECcEEeCHHHHHH-HHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCCcCHHHHHHHHHhh-Cc-
Confidence 9999999999999999999999999 8999999999999974 347888887642 345678999999997 88
Q ss_pred cCceeeEEEEECCCCccCCCchhhhHHHHHHH
Q psy14338 1715 HHLIVGVAVVVDPGVVPINSRGEKQRMHLRDG 1746 (1761)
Q Consensus 1715 ~~~vP~~i~~v~~~~lP~t~~GKvdR~~L~~~ 1746 (1761)
.||+|..|++++ +||+|++|||||++|++.
T Consensus 539 ~~~~P~~i~~v~--~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 539 AYMVPVECVPVD--ELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp --------------------------------
T ss_pred cccCCcEEEEcc--cCCCCCCcCcchHhhhcc
Confidence 999999999999 999999999999999875
No 37
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=7.8e-71 Score=716.39 Aligned_cols=485 Identities=16% Similarity=0.209 Sum_probs=400.6
Q ss_pred ccccccccccccCCCCcCCCCCCCceEEccCCCCceeeCHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCHHHHHHH
Q psy14338 1162 ARTGYLGFLRRTSPAGVAGAPVPPGVSSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAF 1241 (1761)
Q Consensus 1162 ~~~~~~~~~~~~~~~~a~~~P~~~Av~~~d~~~~~~~lTY~eL~~~a~~lA~~L~~~~Gv~~gd~V~i~~~~s~~~iva~ 1241 (1761)
..++++.|.+++. ++||++|++ ++++++||+||+++++++|+.|++. |+++||+|+|+++|++++++++
T Consensus 38 ~~~l~~~l~~~a~-----~~p~~~Al~-----~~~~~~Ty~eL~~~~~~lA~~L~~~-Gv~~gd~V~i~~~n~~e~~~~~ 106 (563)
T 1amu_A 38 DKTIHQLFEEQVS-----KRPNNVAIV-----CENEQLTYHELNVKANQLARIFIEK-GIGKDTLVGIMMEKSIDLFIGI 106 (563)
T ss_dssp TCCHHHHHHHHHH-----HCTTSEEEE-----ETTEEEEHHHHHHHHHHHHHHHHHT-TCCTTCEEEEECCSSHHHHHHH
T ss_pred CCcHHHHHHHHHH-----HCCCCeEEE-----eCCceecHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCCHHHHHHH
Confidence 3577888877765 779999999 6778999999999999999999999 9999999999999999999999
Q ss_pred HHHHHcCCEEEeCCCCCCCCccCChHHHHHHHHhcCCeEEEechhHHHHHhhhccccccccccCCccccCCCCccchhhh
Q psy14338 1242 YGCLYVGAVPVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDMPKKKLAA 1321 (1761)
Q Consensus 1242 lA~l~aG~~~vpldp~~P~~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1321 (1761)
|||+++|+++|||+|.+|.+ ++.+++++++++++|++......+........+.. +. ...........
T Consensus 107 lA~~~~Gav~vpl~~~~~~~------~l~~il~~~~~~~li~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~ 174 (563)
T 1amu_A 107 LAVLKAGGAYVPIDIEYPKE------RIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEI--FE----EDTIKIREGTN 174 (563)
T ss_dssp HHHHHTTCEEEECCTTSCHH------HHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEE--CC----CSTTTTSCCSC
T ss_pred HHHHHhCCEEEEeCCCCcHH------HHHHHHHhcCCCEEEEcCchhhhhhhccccCceee--ec----chhhccccCcc
Confidence 99999999999999988877 99999999999999999877655443221100000 00 00000000011
Q ss_pred ccCCCCCCCEEEEEeccCCCCCCceEEccHHHHHHHHHHHHHHcCcCCCCeEEEEeCCccChhHHHHHHHHhhcCceEEE
Q psy14338 1322 LYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSIL 1401 (1761)
Q Consensus 1322 ~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~L~~G~~~vl 1401 (1761)
......++++|||+|||||||.||||+++|+++.+.+.+....+++.++|+++.+++++|+.++ +.++.+|+.|+++++
T Consensus 175 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~ 253 (563)
T 1amu_A 175 LHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASV-WEMFMALLTGASLYI 253 (563)
T ss_dssp CCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEE
T ss_pred CCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHH-HHHHHHHHCCCEEEE
Confidence 1234567899999999999999999999999999999998889999999999999999998877 678999999999999
Q ss_pred eCCCccccCHHHHHHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCCCCCcceEEEeecCCCChHHHHHHHHHHHh
Q psy14338 1402 IPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFS 1481 (1761)
Q Consensus 1402 ~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~~l~~Lr~v~~gGe~l~~~~l~~~~~~~~~ 1481 (1761)
.+.. ..+++..+++.|+++++|+++++|+++..+.. ..+++||.+++||+++++ .+.++|.+.
T Consensus 254 ~~~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~-------------~~~~~lr~~~~gG~~l~~-~~~~~~~~~-- 316 (563)
T 1amu_A 254 ILKD-TINDFVKFEQYINQKEITVITLPPTYVVHLDP-------------ERILSIQTLITAGSATSP-SLVNKWKEK-- 316 (563)
T ss_dssp CCHH-HHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT-------------TTCCSCSEEEEESSCCCH-HHHHHHTTT--
T ss_pred cChH-hhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh-------------cccccccEEEEEEecCCH-HHHHHHHhC--
Confidence 8752 23689999999999999999999999877622 246789999999999999 676666432
Q ss_pred hCCCCCccccccccccccceeeecCCCCCCCceeEecccccccCcceecccCCCCccceeccccccCCcEEEEEcCCCCC
Q psy14338 1482 ALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLPGVKVIIANPETKG 1561 (1761)
Q Consensus 1482 ~~g~~e~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~ 1561 (1761)
..+++.||+||++.+++...... ....+..++|+|++|++++|+|++ ++
T Consensus 317 ------~~~~~~YG~TE~~~~~~~~~~~~------------------------~~~~~~~~vG~p~~~~~v~i~d~~-~~ 365 (563)
T 1amu_A 317 ------VTYINAYGPTETTICATTWVATK------------------------ETIGHSVPIGAPIQNTQIYIVDEN-LQ 365 (563)
T ss_dssp ------SEEEEEECCGGGSSCSEEEECCS------------------------SCCCSSCCCBEECTTEEEEEECTT-SC
T ss_pred ------CeEEEEECcCHHhHhheeeeccc------------------------ccCCCCCcccceeCCCEEEEECCC-cC
Confidence 57999999999875433211000 000123569999999999999965 89
Q ss_pred CCCCCcceEEEEcCCcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEeccCCCCCCCCCCCCCCCcccce
Q psy14338 1562 QCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDA 1641 (1761)
Q Consensus 1562 ~~p~G~~GEL~i~g~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~~~~~d~d~~~~~~g~G~~~~~ 1641 (1761)
++|.|++|||+|+|+++++|||| +|++|+++|..+|+. +++|||||||+|++ |+| |+
T Consensus 366 ~~~~g~~GEl~v~g~~v~~GY~~---~pe~t~~~f~~~~~~--~g~~w~~TGDlg~~------d~d--------G~---- 422 (563)
T 1amu_A 366 LKSVGEAGELCIGGEGLARGYWK---RPELTSQKFVDNPFV--PGEKLYKTGDQARW------LSD--------GN---- 422 (563)
T ss_dssp BCCTTCEEEEEEEETTCCCEETT---CHHHHHHHEEECSSS--TTSEEEEEEEEEEE------CTT--------SC----
T ss_pred CCCCCCcEEEEEechhhChhhCC---CchhhhhhcccCCCC--CCCEEEecCCEEEE------cCC--------Ce----
Confidence 99999999999999999999999 999999999887764 36789999999999 999 99
Q ss_pred EEEEcccCCeEEeCCeecChHHHHHHHHHhccCcceeEEEeeC-----CeEEEEEEeCCCchhHhhHHHHHHHHHhhhcC
Q psy14338 1642 VFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEALDLVPLVTNAVLEEHH 1716 (1761)
Q Consensus 1642 l~~~GR~dd~Iki~G~rI~~~eIE~~~l~~~p~V~~a~Vv~~~-----~~~~a~v~~~~~~~~~~~l~~~l~~~~Lp~~~ 1716 (1761)
|+|+||+|||||++|+||+|.|||+ +|.+||+|.+|+|++.. +.++|+|+.. ...+.++|+++|+++ || .|
T Consensus 423 l~i~GR~~d~Ik~~G~~V~p~eIE~-~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~-~~~~~~~l~~~l~~~-L~-~y 498 (563)
T 1amu_A 423 IEYLGRIDNQVKIRGHRVELEEVES-ILLKHMYISETAVSVHKDHQEQPYLCAYFVSE-KHIPLEQLRQFSSEE-LP-TY 498 (563)
T ss_dssp EEEEEEGGGEEEETTEEEEHHHHHH-HHTTSTTEEEEEEEEEECTTSCEEEEEEEEES-SCCCHHHHHHHHHHH-SC-GG
T ss_pred EEEeccccCEEEECCEEeCHHHHHH-HHHhCCCcceEEEEEeecCCCCeEEEEEEEeC-CCCCHHHHHHHHHhh-Cc-hh
Confidence 9999999999999999999999999 89999999999999753 3688888865 345678999999997 98 99
Q ss_pred ceeeEEEEECCCCccCCCchhhhHHHHHHHH
Q psy14338 1717 LIVGVAVVVDPGVVPINSRGEKQRMHLRDGF 1747 (1761)
Q Consensus 1717 ~vP~~i~~v~~~~lP~t~~GKvdR~~L~~~~ 1747 (1761)
|+|+.|++++ +||+|+||||||++|++..
T Consensus 499 ~~P~~i~~v~--~lP~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 499 MIPSYFIQLD--KMPLTSNGKIDRKQLPEPD 527 (563)
T ss_dssp GSCSEEEECS--SCCBCTTSSBCGGGSCCCC
T ss_pred hCCcEEEEec--ccCCCCCcChhHHhcCCcc
Confidence 9999999999 9999999999999998764
No 38
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=6e-70 Score=717.23 Aligned_cols=552 Identities=24% Similarity=0.384 Sum_probs=439.1
Q ss_pred ccccccccccccCCCCcCCCCCCCceEEccCCCCceeeCHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCHHHHHHH
Q psy14338 1162 ARTGYLGFLRRTSPAGVAGAPVPPGVSSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAF 1241 (1761)
Q Consensus 1162 ~~~~~~~~~~~~~~~~a~~~P~~~Av~~~d~~~~~~~lTY~eL~~~a~~lA~~L~~~~Gv~~gd~V~i~~~~s~~~iva~ 1241 (1761)
..++.+.|.+++. ++||++|+++.+. .+++++||+||+++++++|++|++. |+++||+|+|+++|++++++++
T Consensus 10 ~~tl~~~l~~~a~-----~~p~~~a~~~~~~-~~~~~~Ty~eL~~~~~~lA~~L~~~-gv~~gd~V~i~~~~~~~~~~~~ 82 (590)
T 3kxw_A 10 CQSLVDVVRLRAL-----HSPNKKSCTFLNK-ELEETMTYEQLDQHAKAIAATLQAE-GAKPGDRVLLLFAPGLPLIQAF 82 (590)
T ss_dssp CSSHHHHHHHHHH-----HCTTSEEEEEEET-TEEEEEEHHHHHHHHHHHHHHHHHT-TCCTTCEEEEECCSSHHHHHHH
T ss_pred cccHHHHHHHHHH-----hCCCCeEEEEEcC-CeeEEEcHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCchhHHHHH
Confidence 3456677777665 7799999997663 4578999999999999999999999 9999999999999999999999
Q ss_pred HHHHHcCCEEEeCCCCCCCCccCChHHHHHHHHhcCCeEEEechhHHHHHhhhccccccccccCCccccCCCCc-cchhh
Q psy14338 1242 YGCLYVGAVPVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDMP-KKKLA 1320 (1761)
Q Consensus 1242 lA~l~aG~~~vpldp~~P~~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 1320 (1761)
|||+++|+++|||+|.++.. ..+++.++++++++++++++.+....+............... ........ .....
T Consensus 83 lA~~~~G~~~vpl~~~~~~~---~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 158 (590)
T 3kxw_A 83 LGCLYAGCIAVPIYPPAQEK---LLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIP-AIALESIELNRSSS 158 (590)
T ss_dssp HHHHHTTCEEEEECCCCSHH---HHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEE-EEEGGGCCGGGGGG
T ss_pred HHHHHhCcEEEEecCCCchH---HHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccc-eeechhcccccccc
Confidence 99999999999999976421 234899999999999999998876655432100000000000 00000000 00111
Q ss_pred hccCCCCCCCEEEEEeccCCCCCCceEEccHHHHHHHHHHHHHHcCcCCCCeEEEEeCCccChhHHHHHHHHhhcCceEE
Q psy14338 1321 ALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSI 1400 (1761)
Q Consensus 1321 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~L~~G~~~v 1400 (1761)
.......+++++||+|||||||+||||+++|+++++.+.+....+++.++|+++.++|++|++++...++.+++.|++++
T Consensus 159 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v 238 (590)
T 3kxw_A 159 WQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAI 238 (590)
T ss_dssp CCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEE
T ss_pred CCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEE
Confidence 12345678999999999999999999999999999999999999999999999999999999998656889999999999
Q ss_pred EeCCCccccCHHHHHHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCCCCCcceEEEeecCCCChHHHHHHHHHHH
Q psy14338 1401 LIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLF 1480 (1761)
Q Consensus 1401 l~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~~l~~Lr~v~~gGe~l~~~~l~~~~~~~~ 1480 (1761)
+.++..+..++..+++.|+++++|++.++|+++..+++.+. .......++++||.+++|||++++ .+.++|.+.+
T Consensus 239 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~----~~~~~~~~l~~lr~~~~gg~~l~~-~~~~~~~~~~ 313 (590)
T 3kxw_A 239 MMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIR----EEKKEGLDLSSWVTAFNGAEPVRE-ETMEHFYQAF 313 (590)
T ss_dssp ECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCC----GGGGTTCCCTTCCEEEECSSCCCH-HHHHHHHHHH
T ss_pred EeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhh----hhhccCCCchhhHHHhhCCCCCCH-HHHHHHHHHH
Confidence 98853333389999999999999999999999999987532 223456789999999999999999 8889999999
Q ss_pred hhCCCCCccccccccccccceeeecCCCCCCCceeEecccccccCcceecccCCCCccceeccccccCCcEEEEEcCCCC
Q psy14338 1481 SALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLPGVKVIIANPETK 1560 (1761)
Q Consensus 1481 ~~~g~~e~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~ 1560 (1761)
..+|.....+++.||+||++.+++.................+....+.......+.....+++|+|+++ ++|+|++++
T Consensus 314 ~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~ 391 (590)
T 3kxw_A 314 KEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTL 391 (590)
T ss_dssp GGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTC
T ss_pred HHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCC
Confidence 888877788999999999988777655443333333433333333333333334455567889999998 889998889
Q ss_pred CCCCCCcceEEEEcCCcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEeccCCCCCCCCCCCCCCCcccc
Q psy14338 1561 GQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHD 1640 (1761)
Q Consensus 1561 ~~~p~G~~GEL~i~g~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~~~~~d~d~~~~~~g~G~~~~ 1640 (1761)
+++|.|++|||+|+|+++++|||| +|++|+++|..+++...++.+||||||+|++ | | |+
T Consensus 392 ~~~~~g~~GEl~v~g~~v~~GY~~---~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~------d-d--------G~--- 450 (590)
T 3kxw_A 392 IPCDFDQVGEIWVQSNSVAKGYWN---QPEETRHAFAGKIKDDERSAIYLRTGDLGFL------H-E--------NE--- 450 (590)
T ss_dssp CBCCTTBCEEEEEESTTSCCCBTT---CHHHHHHHHCBCCTTC---CCBEEEEEEEEE------E-T--------TE---
T ss_pred cCCCCCCEEEEEEeCCcccccccC---ChhHHHHHHhccccCCCCCCcEEecCcEEEE------E-C--------CE---
Confidence 999999999999999999999999 9999999998776654345569999999999 8 8 99
Q ss_pred eEEEEcccCCeEEeCCeecChHHHHHHHH-HhccCcc--eeEEEee----CCeEEEEEEeCCC---chhHhhHHHHHHHH
Q psy14338 1641 AVFVVGALDETIMLRGMRYHPIDIENSVM-RAHKKIA--ECAVFTW----TNLLVVVVELDGN---ESEALDLVPLVTNA 1710 (1761)
Q Consensus 1641 ~l~~~GR~dd~Iki~G~rI~~~eIE~~~l-~~~p~V~--~a~Vv~~----~~~~~a~v~~~~~---~~~~~~l~~~l~~~ 1710 (1761)
|+|+||+|||||++|+||+|.|||+ +| ..||+|. +|+|++. ++.++++++.... ..+.++++++|+++
T Consensus 451 -l~~~GR~dd~Ik~~G~~v~p~eIE~-~l~~~~~~v~~~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~ 528 (590)
T 3kxw_A 451 -LYVTGRIKDLIIIYGKNHYPQDIEF-SLMHSPLHHVLGKCAAFVIQEEHEYKLTVMCEVKNRFMDDVAQDNLFNEIFEL 528 (590)
T ss_dssp -EEEEEESSCHHHHHHHTTHHHHHHH-HHHHSGGGGGEEEEEEEEEEETTEEEEEEEEEESCTTCCHHHHHHHHHHHHHH
T ss_pred -EEEEcCccceEEECCEecCHHHHHH-HHHhcCccccCccEEEEEecCCCCceEEEEEEeccccccchhHHHHHHHHHHH
Confidence 9999999999999999999999999 66 8899998 7888864 3467777776433 45678899999997
Q ss_pred HhhhcCceee-EEEEECCCCccCCCchhhhHHHHHHHHHcCCCChh
Q psy14338 1711 VLEEHHLIVG-VAVVVDPGVVPINSRGEKQRMHLRDGFLADQLDPI 1755 (1761)
Q Consensus 1711 ~Lp~~~~vP~-~i~~v~~~~lP~t~~GKvdR~~L~~~~~~~~~~~~ 1755 (1761)
|++.|++|. .+++++.++||+|+||||||++|++++.++++..+
T Consensus 529 -l~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~~~~~~ 573 (590)
T 3kxw_A 529 -VYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDKTLPIV 573 (590)
T ss_dssp -HHHHHSCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHHTCSCCS
T ss_pred -HHHHcCCceeEEEEECCCccCcCCCcHHHHHHHHHHHHcCCCcee
Confidence 775688886 56666322999999999999999999999887654
No 39
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=2.1e-70 Score=706.54 Aligned_cols=493 Identities=18% Similarity=0.200 Sum_probs=402.7
Q ss_pred ccccccccccccccCCCCcCCCCCCCceEEccCCCCceeeCHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCHHHHH
Q psy14338 1160 LYARTGYLGFLRRTSPAGVAGAPVPPGVSSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLIC 1239 (1761)
Q Consensus 1160 ~~~~~~~~~~~~~~~~~~a~~~P~~~Av~~~d~~~~~~~lTY~eL~~~a~~lA~~L~~~~Gv~~gd~V~i~~~~s~~~iv 1239 (1761)
....++.+.|.+++. ++|+++|+++. +.++++||+||+++++++|++|++. |+++||+|+|+++|++++++
T Consensus 13 ~~~~~l~~~l~~~a~-----~~p~~~A~~~~---~~~~~~Ty~eL~~~~~~lA~~L~~~-Gv~~gd~V~i~~~~~~~~~~ 83 (517)
T 3r44_A 13 DKMKNIGWMLRQRAT-----VSPRLQAYVEP---STDVRMTYAQMNALANRCADVLTAL-GIAKGDRVALLMPNSVEFCC 83 (517)
T ss_dssp GGGGCHHHHHHHHHH-----HSTTSEEEEEG---GGTEEEEHHHHHHHHHHHHHHHHHT-TCCTTCEEEEECCSSHHHHH
T ss_pred ccccCHHHHHHHHHH-----hCCCCeEEEeC---CcCceeeHHHHHHHHHHHHHHHHHc-CCCCcCEEEEEcCCCHHHHH
Confidence 344567777777765 77999999942 1234999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHcCCEEEeCCCCCCCCccCChHHHHHHHHhcCCeEEEechhHHHHHhhhccccccc--cccCCccccCCC-Ccc
Q psy14338 1240 AFYGCLYVGAVPVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVD--IKSWPTILDTDD-MPK 1316 (1761)
Q Consensus 1240 a~lA~l~aG~~~vpldp~~P~~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~ 1316 (1761)
++|||+++|+++|||||.+|.+ ++.+++++++++++|++......+.......... ...+........ ...
T Consensus 84 ~~lA~~~~G~~~vpl~~~~~~~------~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (517)
T 3r44_A 84 LFYGAAKLGAVAVPINTRLAAP------EVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRS 157 (517)
T ss_dssp HHHHHHHHTCEEEECCTTSCHH------HHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEEHHHHHHHHHH
T ss_pred HHHHHHHhCcEEEecCcccCHH------HHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccCcccHHHHhhc
Confidence 9999999999999999988877 9999999999999999988766554432110000 000000000000 000
Q ss_pred chhhhccCCCCCCCEEEEEeccCCCCCCceEEccHHHHHHHHHHHHHHcCcCCCCeEEEEeCCccChhHHHHHHHHhhcC
Q psy14338 1317 KKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSG 1396 (1761)
Q Consensus 1317 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~L~~G 1396 (1761)
.....+.....+++++||+|||||||+||||+++|+++.+.+.+....+++.++|+++.++|++|+.++. ..+.+++.|
T Consensus 158 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~~~~G 236 (517)
T 3r44_A 158 AAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALT-TVIFSAMRG 236 (517)
T ss_dssp CCCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHH-HHHHHHHHT
T ss_pred cCcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHH-HHHHHHhcC
Confidence 0011122345789999999999999999999999999999999999999999999999999999988874 445555599
Q ss_pred ceEEEeCCCccccCHHHHHHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCCCCCcceEEEeecCCCChHHHHHHH
Q psy14338 1397 HHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAF 1476 (1761)
Q Consensus 1397 ~~~vl~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~~l~~Lr~v~~gGe~l~~~~l~~~~ 1476 (1761)
+++++.+. +++..+++.|+++++|+++++|++++.+.+. ......++++||.+++|||++++ .+.++|
T Consensus 237 ~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-------~~~~~~~~~~lr~i~~gGe~l~~-~~~~~~ 304 (517)
T 3r44_A 237 VTLISMPQ----FDATKVWSLIVEERVCIGGAVPAILNFMRQV-------PEFAELDAPDFRYFITGGAPMPE-ALIKIY 304 (517)
T ss_dssp CEEEECSS----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHS-------HHHHHCCCTTCCEEEECSSCCCH-HHHHHH
T ss_pred eEEEEeCC----CCHHHHHHHHHHhCCeEEEeHHHHHHHHHhC-------cccccCCCCcccEEEECCCCCCH-HHHHHH
Confidence 99999874 7999999999999999999999999999763 12345678899999999999999 777777
Q ss_pred HHHHhhCCCCCccccccccccccceeeecCCCCCCCceeEecccccccCcceecccCCCCccceeccccccCCcEEEEEc
Q psy14338 1477 SKLFSALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLPGVKVIIAN 1556 (1761)
Q Consensus 1477 ~~~~~~~g~~e~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d 1556 (1761)
.+. | ..+++.||+||++..++.... .. ...+.+++|+|+++++++|+|
T Consensus 305 ~~~----~---~~~~~~YG~TE~~~~~~~~~~-----------~~--------------~~~~~~~~G~~~~~~~~~i~d 352 (517)
T 3r44_A 305 AAK----N---IEVVQGYALTESCGGGTLLLS-----------ED--------------ALRKAGSAGRATMFTDVAVRG 352 (517)
T ss_dssp HHT----T---CEEEEEEECGGGTTCEEEECG-----------GG--------------TTTTTTCCBEECTTEEEEEEC
T ss_pred Hhc----C---CcEEEeecccccccceeecCC-----------cc--------------ccccCCCCCcCCCCeEEEEEC
Confidence 653 2 689999999998654332110 00 011234699999999999999
Q ss_pred CCCCCCCCCCcceEEEEcCCcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEeccCCCCCCCCCCCCCCC
Q psy14338 1557 PETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVS 1636 (1761)
Q Consensus 1557 ~~~~~~~p~G~~GEL~i~g~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~~~~~d~d~~~~~~g~G 1636 (1761)
++ ++++|.| .|||+|+|+++++|||| +|++|+++| .+|||||||+|++ |+| |
T Consensus 353 ~~-~~~~~~g-~GEl~v~g~~v~~GY~~---~p~~t~~~f---------~~g~~~TGDl~~~------~~d--------G 404 (517)
T 3r44_A 353 DD-GVIREHG-EGEVVIKSDILLKEYWN---RPEATRDAF---------DNGWFRTGDIGEI------DDE--------G 404 (517)
T ss_dssp TT-SCEESSE-EEEEEEEETTSCSEETT---CHHHHHHTE---------ETTEEEEEEEEEE------CTT--------S
T ss_pred CC-CCCCCCC-CeEEEEeCcchhhhhCC---ChhhhHhhh---------cCCCEecceeEEE------cCC--------e
Confidence 65 8999999 89999999999999999 999999999 4689999999999 999 9
Q ss_pred cccceEEEEcccCCeEEeCCeecChHHHHHHHHHhccCcceeEEEee-----CCeEEEEEEeCCCchhHhhHHHHHHHHH
Q psy14338 1637 KLHDAVFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELDGNESEALDLVPLVTNAV 1711 (1761)
Q Consensus 1637 ~~~~~l~~~GR~dd~Iki~G~rI~~~eIE~~~l~~~p~V~~a~Vv~~-----~~~~~a~v~~~~~~~~~~~l~~~l~~~~ 1711 (1761)
+ |+|+||+|||||++|+||+|.|||+ +|.+||+|.+|+|++. ++.++++|...+...+.++|+++|+++
T Consensus 405 ~----l~~~GR~dd~ik~~G~~v~p~eIE~-~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~~~~~~l~~~l~~~- 478 (517)
T 3r44_A 405 Y----LYIKDRLKDMIISGGENVYPAEIES-VIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNEVSEQQIVEYCGTR- 478 (517)
T ss_dssp C----EEEEECGGGCEEETTEEECHHHHHH-HHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTTCCHHHHHHHHHHH-
T ss_pred e----EEEecCCcCEEEECCEEECHHHHHH-HHHhCCCEeEEEEEeccccccCceEEEEEECCCCCCCHHHHHHHHHHh-
Confidence 9 9999999999999999999999999 8999999999999975 346777776566667788999999997
Q ss_pred hhhcCceeeEEEEECCCCccCCCchhhhHHHHHHHHHc
Q psy14338 1712 LEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 1749 (1761)
Q Consensus 1712 Lp~~~~vP~~i~~v~~~~lP~t~~GKvdR~~L~~~~~~ 1749 (1761)
|| .||+|+.|++++ +||+|+||||||++|++.+.+
T Consensus 479 L~-~~~~P~~i~~v~--~lP~t~~GKi~R~~L~~~~~~ 513 (517)
T 3r44_A 479 LA-RYKLPKKVIFAE--AIPRNPTGKILKTVLREQYSA 513 (517)
T ss_dssp SC-GGGSCSEEEECS--CCCBCTTCCBCHHHHHHHHGG
T ss_pred CC-CCCCCCEEEEEC--CCCCCCCcCccHHHHHHHHHh
Confidence 98 999999999999 999999999999999999854
No 40
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=1.1e-69 Score=698.48 Aligned_cols=486 Identities=16% Similarity=0.169 Sum_probs=397.0
Q ss_pred ccccccccccCCCCcCCCCCCCceEEccCCCCceeeCHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCHHHHHHHHH
Q psy14338 1164 TGYLGFLRRTSPAGVAGAPVPPGVSSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYG 1243 (1761)
Q Consensus 1164 ~~~~~~~~~~~~~~a~~~P~~~Av~~~d~~~~~~~lTY~eL~~~a~~lA~~L~~~~Gv~~gd~V~i~~~~s~~~iva~lA 1243 (1761)
++++.|.+++. ++||++|+... ..++++||+||+++++++|++|++. |+++||+|+|+++|++++++++||
T Consensus 3 tl~~~l~~~a~-----~~p~~~a~~~~---~~~~~~Ty~el~~~~~~~A~~L~~~-Gv~~gd~V~i~~~~~~~~~~~~lA 73 (504)
T 1t5h_X 3 TVNEMLRRAAT-----RAPDHCALAVP---ARGLRLTHAELRARVEAVAARLHAD-GLRPQQRVAVVAPNSADVVIAILA 73 (504)
T ss_dssp CHHHHHHHHHH-----HCTTSEEEEET---TTTEEEEHHHHHHHHHHHHHHHHHT-TCCTTCEEEEECCSCHHHHHHHHH
T ss_pred cHHHHHHHHHH-----hCCCceEEEEc---CCCceeEHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCHHHHHHHHH
Confidence 34555555554 77999999842 1268999999999999999999999 999999999999999999999999
Q ss_pred HHHcCCEEEeCCCCCCCCccCChHHHHHHHHhcCCeEEEe--chhHHHHH-hhhccccccccccCCccccCCCCccchhh
Q psy14338 1244 CLYVGAVPVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLS--NQNVIKLL-KSKEASNVVDIKSWPTILDTDDMPKKKLA 1320 (1761)
Q Consensus 1244 ~l~aG~~~vpldp~~P~~~~~~~~rl~~il~~~~~~~vl~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 (1761)
|+++|+++|||||.+|.+ ++.+++++++++++|+ +......+ .......++ .+.+.............
T Consensus 74 ~~~~G~~~vpl~~~~~~~------~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 144 (504)
T 1t5h_X 74 LHRLGAVPALLNPRLKSA------ELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARII---FLGDLVRDGEPYSYGPP 144 (504)
T ss_dssp HHHHTCEEEEECTTSCHH------HHHHHHHHTTCSEEEECC--CHHHHHHHHCCCCEEE---EGGGTEETTEECCCSCC
T ss_pred HHHhCcEEEecCCccChH------HHHHHHhhcCCcEEEEecchhhhhhhhhccccceeE---EecchhhcCcccccCCc
Confidence 999999999999988877 9999999999999999 76655444 222111111 11121111000000000
Q ss_pred hccCCCCCCCEEEEEeccCCCCCCceEEccHHHHHHHHHHHHHHcCc--CCCCeEEEEeCCccChhHHHHHHHHhhcCce
Q psy14338 1321 ALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACEL--YPSRHIALCLDPYCGLGFALWVLSSVYSGHH 1398 (1761)
Q Consensus 1321 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~~~~~L~~G~~ 1398 (1761)
.......++++|||+|||||||+||||+++|+++.+.+.+....+++ .++++++..+|++|.+++...++.+|+.|++
T Consensus 145 ~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~ 224 (504)
T 1t5h_X 145 IEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGT 224 (504)
T ss_dssp CCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCE
T ss_pred cCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCce
Confidence 11134578999999999999999999999999999999998888888 8888999999999988876678999999999
Q ss_pred EEEeCCCccccCHHHHHHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCCCCCcceEEEeecCCCChHHHHHHHHH
Q psy14338 1399 SILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSK 1478 (1761)
Q Consensus 1399 ~vl~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~~l~~Lr~v~~gGe~l~~~~l~~~~~~ 1478 (1761)
+++.+. +++..+++.|+++++|+++++|+++..|++.... .....++++||.+++|||++++ .+.++|.+
T Consensus 225 ~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----~~~~~~l~~lr~~~~gG~~l~~-~~~~~~~~ 294 (504)
T 1t5h_X 225 YVVVEE----FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAH-----AGSSLKLDSLRHVTFAGATMPD-AVLETVHQ 294 (504)
T ss_dssp EEECSS----CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCC-----TTCCCCCTTCCEEEECCTTCCH-HHHHHHHH
T ss_pred EEeCCC----CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcc-----ccccccCccccEEEEcCCcCCH-HHHHHHHH
Confidence 999874 7999999999999999999999999999774211 0234568999999999999999 88888887
Q ss_pred HHhhCCCCCccccccccccccceeeecCCCCCCCceeEecccccccCcceecccCCCCccceeccccccCCcEEEEEcCC
Q psy14338 1479 LFSALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLPGVKVIIANPE 1558 (1761)
Q Consensus 1479 ~~~~~g~~e~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~ 1558 (1761)
.++ ..+++.||+||+.. +.... . .+.+++|+|+++++++|+|++
T Consensus 295 ~~~------~~~~~~YG~TE~~~-~~~~~-------------~----------------~~~~~~g~p~~~~~~~i~~~~ 338 (504)
T 1t5h_X 295 HLP------GEKVNIYGTTEAMN-SLYMR-------------Q----------------PKTGTEMAPGFFSEVRIVRIG 338 (504)
T ss_dssp HCC------SEEEEEEEETTTEE-EEEEE-------------S----------------CSSSSEEBCCTTCCEEEECTT
T ss_pred hcC------cceeeeeccccccc-ccccc-------------C----------------CCCCccccCCCCCceeEEecc
Confidence 763 57899999999722 11100 0 012359999999999999966
Q ss_pred CC--CCCCCCcceEEEEc-CCcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEeccCCCCCCCCCCCCCC
Q psy14338 1559 TK--GQCGDSHLGEIWVQ-SPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGV 1635 (1761)
Q Consensus 1559 ~~--~~~p~G~~GEL~i~-g~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~~~~~d~d~~~~~~g~ 1635 (1761)
++ +++|.|+.|||+|+ |+++++|||| +|+.|+++| .+|||||||+|++ |+|
T Consensus 339 ~~~~~~~~~g~~GEl~v~gg~~~~~GY~~---~~~~t~~~f---------~~g~~~TGDlg~~------~~d-------- 392 (504)
T 1t5h_X 339 GGVDEIVANGEEGELIVAASDSAFVGYLN---QPQATAEKL---------QDGWYRTSDVAVW------TPE-------- 392 (504)
T ss_dssp SCTTCBCCTTCCEEEEEECCTTSCCCBTT---CHHHHHHHE---------ETTEEEEEEEEEE------CTT--------
T ss_pred CCCCCcCCCCCcceEEEeCCceeeceecC---Cchhhhhhh---------cCCccccCcEEEE------CCC--------
Confidence 32 89999999999999 9999999999 999999999 3689999999999 999
Q ss_pred CcccceEEEEcccCCeEEeCCeecChHHHHHHHHHhccCcceeEEEee-----CCeEEEEEEeC-CCchhHhhHHHHHHH
Q psy14338 1636 SKLHDAVFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELD-GNESEALDLVPLVTN 1709 (1761)
Q Consensus 1636 G~~~~~l~~~GR~dd~Iki~G~rI~~~eIE~~~l~~~p~V~~a~Vv~~-----~~~~~a~v~~~-~~~~~~~~l~~~l~~ 1709 (1761)
|+ |+|+||+|||||++|+||+|.|||+ +|.+||+|.+|+|++. ++.++|+|+.. +...+.++++++|++
T Consensus 393 G~----l~~~GR~dd~ik~~G~~v~p~eIE~-~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~ 467 (504)
T 1t5h_X 393 GT----VRILGRVDDMIISGGENIHPSEIER-VLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRS 467 (504)
T ss_dssp SC----EEEEEEGGGCEEETTEEECHHHHHH-HHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCHHHHHHHHHT
T ss_pred ce----EEEeCcccCEEEECCEEECHHHHHH-HHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCHHHHHHHHhh
Confidence 99 9999999999999999999999999 8999999999999975 34788998874 345677899999997
Q ss_pred -HHhhhcCceeeEEEEECCCCccCCCchhhhHHHHHHHHH
Q psy14338 1710 -AVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFL 1748 (1761)
Q Consensus 1710 -~~Lp~~~~vP~~i~~v~~~~lP~t~~GKvdR~~L~~~~~ 1748 (1761)
+ || .||+|+.|++++ +||+|+||||||++|++.+.
T Consensus 468 ~~-L~-~~~~P~~i~~v~--~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 468 SE-LA-DFKRPKRYFILD--QLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp SS-CC-GGGSCSEEEECS--CCCBCTTSCBCHHHHHHHHC
T ss_pred cc-Cc-ccccceEEEEhh--hCCCCCCCCEeHHHHHHHhc
Confidence 6 88 999999999999 99999999999999999873
No 41
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=1.2e-69 Score=707.04 Aligned_cols=492 Identities=15% Similarity=0.171 Sum_probs=383.6
Q ss_pred cccccccccCCCCcCCCCCCCceEEccCCCCceeeCHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCHHHHHHHHHH
Q psy14338 1165 GYLGFLRRTSPAGVAGAPVPPGVSSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGC 1244 (1761)
Q Consensus 1165 ~~~~~~~~~~~~~a~~~P~~~Av~~~d~~~~~~~lTY~eL~~~a~~lA~~L~~~~Gv~~gd~V~i~~~~s~~~iva~lA~ 1244 (1761)
.++.|.+++. ++||++|+++++..+.++++||+||+++++++|++|++. |+++||+|+|+++|++++++++|||
T Consensus 58 ~~~~l~~~a~-----~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~-Gv~~Gd~V~l~~~~~~e~~~~~lA~ 131 (580)
T 3etc_A 58 AYDVVDVYAR-----DSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKH-GIGKGDYVMLTLKSRYDFWYCMLGL 131 (580)
T ss_dssp HHHTHHHHHH-----HCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHT-TCCTTCEEEEECTTCTHHHHHHHHH
T ss_pred HHHHHHHHHh-----hCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 3455555554 679999999877655678999999999999999999999 9999999999999999999999999
Q ss_pred HHcCCEEEeCCCCCCCCccCChHHHHHHHHhcCCeEEEechhHH--HHHhhhcc------ccccccc-----cCCc---c
Q psy14338 1245 LYVGAVPVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVI--KLLKSKEA------SNVVDIK-----SWPT---I 1308 (1761)
Q Consensus 1245 l~aG~~~vpldp~~P~~~~~~~~rl~~il~~~~~~~vl~~~~~~--~~~~~~~~------~~~~~~~-----~~~~---~ 1308 (1761)
+|+|+++||++|.+|.+ ++.+++++++++++|++.+.. ..+..... ...+... .+.. .
T Consensus 132 ~~~Gav~vpl~~~~~~~------~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (580)
T 3etc_A 132 HKLGAIAVPATHMLKTR------DIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKE 205 (580)
T ss_dssp HHHTCEEEECCTTCCHH------HHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCCTTCEEHHHH
T ss_pred HhCCEEEEeCCccCCHH------HHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccccccccHHHH
Confidence 99999999999988777 999999999999999976532 22222110 0000000 0000 0
Q ss_pred ccCCCCccchhhhccCCCCCCCEEEEEeccCCCCCCceEEccHHHHHHHHHHHHHHcCcCCCCeEEEEeCCccChhHHHH
Q psy14338 1309 LDTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALW 1388 (1761)
Q Consensus 1309 ~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 1388 (1761)
+.... +....+.......++++|||+|||||||+||||+++|.++++.+......+++.++++++...++.|+.+....
T Consensus 206 ~~~~~-~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (580)
T 3etc_A 206 LEESS-PIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGK 284 (580)
T ss_dssp HHHSC-SCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHHHT
T ss_pred HhhCC-cccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHHHHH
Confidence 00000 00000000124578999999999999999999999999999888887777889999999988888888887556
Q ss_pred HHHHhhcCceEEEeCCCccccCHHHHHHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCCCCCcceEEEeecCCCC
Q psy14338 1389 VLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERP 1468 (1761)
Q Consensus 1389 ~~~~L~~G~~~vl~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~~l~~Lr~v~~gGe~l~ 1468 (1761)
++.+++.|+++++.+.. .+++..+++.|+++++|+++++|++++.|++. .....++++||.+++|||+++
T Consensus 285 ~~~~l~~G~~~~~~~~~--~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~--------~~~~~~l~~lr~i~~gGe~l~ 354 (580)
T 3etc_A 285 LYGQWIAGCAVFVYDYD--RFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE--------DLSHYNFSTLKYAVVAGEPLN 354 (580)
T ss_dssp THHHHHTTCEEEEEECS--SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS--------CC---CCTTCCEEEECSSCCC
T ss_pred HHHHHhCCcEEEEecCC--CCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc--------ccccCCCccceEEEEccCCCC
Confidence 78899999999988532 58999999999999999999999999999763 234567899999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCccccccccccccceeeecCCCCCCCceeEecccccccCcceecccCCCCccceeccccccC
Q psy14338 1469 RIHLTSAFSKLFSALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLP 1548 (1761)
Q Consensus 1469 ~~~l~~~~~~~~~~~g~~e~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~ 1548 (1761)
+ ++.++|.+.++ ..+++.||+||++..+...... ..+.+++|+|++
T Consensus 355 ~-~~~~~~~~~~g------~~i~~~YG~TE~~~~~~~~~~~---------------------------~~~~~~~G~p~~ 400 (580)
T 3etc_A 355 P-EVFNRFLEFTG------IKLMEGFGQTETVVTIATFPWM---------------------------EPKPGSIGKPTP 400 (580)
T ss_dssp H-HHHHHHHHHHS------CCCEEEECCTTSSCCEECCTTS---------------------------CCCTTCCBEECT
T ss_pred H-HHHHHHHHHhC------CeEecccccccccceeecCCCC---------------------------CCCCCccccCCC
Confidence 9 88888888763 5799999999986654332110 011245999999
Q ss_pred CcEEEEEcCCCCCCCCCCcceEEEEcC-----CcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEeccCC
Q psy14338 1549 GVKVIIANPETKGQCGDSHLGEIWVQS-----PHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSP 1623 (1761)
Q Consensus 1549 ~~~~~v~d~~~~~~~p~G~~GEL~i~g-----~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~~~~ 1623 (1761)
|++++|+|++ +++||+|++|||+|+| +++++|||| +|+.|++.| .+|||||||+|++
T Consensus 401 ~~~v~ivd~~-g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~---~p~~t~~~f---------~~gwy~TGDlg~~----- 462 (580)
T 3etc_A 401 GYKIELMDRD-GRLCEVGEEGEIVINTMEGKPVGLFVHYGK---DPERTEETW---------HDGYYHTGDMAWM----- 462 (580)
T ss_dssp TCEEEEECTT-SCBCCTTCCEEEEEECTTCCCTTCCCEETT---CHHHHHHHE---------ETTEEEEEEEEEE-----
T ss_pred CCEEEEECCC-CCCCCCCCceEEEEecCCCCCCeeeccccC---CHhHHHhhc---------CCCEEecCcEEEE-----
Confidence 9999999976 8999999999999997 789999999 999999999 3689999999999
Q ss_pred CCCCCCCCCCCCCcccceEEEEcccCCeEEeCCeecChHHHHHHHHHhccCcceeEEEee-----CCeEEEEEEeCCC--
Q psy14338 1624 AGVAGAPVPPGVSKLHDAVFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELDGN-- 1696 (1761)
Q Consensus 1624 ~d~d~~~~~~g~G~~~~~l~~~GR~dd~Iki~G~rI~~~eIE~~~l~~~p~V~~a~Vv~~-----~~~~~a~v~~~~~-- 1696 (1761)
|+| |+ |+|+||+|||||++|+||+|.|||+ +|.+||+|.+|+|++. ++.++++|+....
T Consensus 463 -d~d--------G~----l~~~GR~dd~Ik~~G~~I~p~eIE~-~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~ 528 (580)
T 3etc_A 463 -DED--------GY----LWFVGRADDIIKTSGYKVGPFEVES-ALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYT 528 (580)
T ss_dssp -CTT--------SC----EEEEEESSSCEEETTEEECHHHHHH-HHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC
T ss_pred -CCC--------Cc----EEEEecCCCEEEECCEEECHHHHHH-HHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCC
Confidence 999 99 9999999999999999999999999 8999999999999974 3478888887432
Q ss_pred --chhHhhHHHHHHHHHhhhcCceeeEEEEECCCCccCCCchhhhHHHHHHHHHc
Q psy14338 1697 --ESEALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 1749 (1761)
Q Consensus 1697 --~~~~~~l~~~l~~~~Lp~~~~vP~~i~~v~~~~lP~t~~GKvdR~~L~~~~~~ 1749 (1761)
....++|+++|+++ || .||+|+.|++++ +||+|+||||+|++|++++.+
T Consensus 529 ~~~~~~~~l~~~l~~~-l~-~~~~P~~i~~v~--~lP~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 529 PSDSLKNELQDHVKNV-TA-PYKYPRIIEFVP--ELPKTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp CCHHHHHHHHHHHHHH-SC-GGGCCSEEEEEC--C--------------------
T ss_pred CCHHHHHHHHHHHHhh-CC-CccCCeEEEEeC--CCCCCCCcCCcHHHHHhHhhc
Confidence 23357899999987 88 999999999999 999999999999999998743
No 42
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=2.5e-70 Score=710.43 Aligned_cols=490 Identities=14% Similarity=0.191 Sum_probs=320.6
Q ss_pred ccccccccccccCCCCcCCCCCCCceEEccCCCCceeeCHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCHHHHHHH
Q psy14338 1162 ARTGYLGFLRRTSPAGVAGAPVPPGVSSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAF 1241 (1761)
Q Consensus 1162 ~~~~~~~~~~~~~~~~a~~~P~~~Av~~~d~~~~~~~lTY~eL~~~a~~lA~~L~~~~Gv~~gd~V~i~~~~s~~~iva~ 1241 (1761)
+.++++.|.+++. ++||++|++ ++++++||+||+++++++|++|++. |+++||+|+|+++|++++++++
T Consensus 29 ~~tl~~~l~~~a~-----~~p~~~Al~-----~~~~~~Ty~eL~~~~~~lA~~L~~~-Gv~~gd~V~i~~~n~~~~~~~~ 97 (544)
T 3o83_A 29 DQPLTRILTVGVQ-----SHPHSLAII-----CGERQLSYIELDRLSTNLATRLAEK-GLGKGDTALVQLPNVAEFYIVF 97 (544)
T ss_dssp CCCTTHHHHHHHH-----HCTTSEEEE-----ETTEEEEHHHHHHHHHHHHHHHHHT-TCCTTCEEEECCCSSHHHHHHH
T ss_pred CCCHHHHHHHHHH-----hCCCceEEE-----cCCCceeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEECCCCHHHHHHH
Confidence 4567778877765 779999999 6789999999999999999999999 9999999999999999999999
Q ss_pred HHHHHcCCEEEeCCCCCCCCccCChHHHHHHHHhcCCeEEEechhHH--------HHHhhhccc-c-cccccc------C
Q psy14338 1242 YGCLYVGAVPVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVI--------KLLKSKEAS-N-VVDIKS------W 1305 (1761)
Q Consensus 1242 lA~l~aG~~~vpldp~~P~~~~~~~~rl~~il~~~~~~~vl~~~~~~--------~~~~~~~~~-~-~~~~~~------~ 1305 (1761)
|||+++|+++||++|.+|.+ ++.+++++++++++|++.... ..+...... . .+.... +
T Consensus 98 lA~~~~Gav~vpl~~~~~~~------~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (544)
T 3o83_A 98 FALLKAGVVVLNALYSHRQY------ELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGL 171 (544)
T ss_dssp HHHHHHTCEEEECCTTCCHH------HHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTTSEEH
T ss_pred HHHHHhCcEEecCCCCCCHH------HHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCccccch
Confidence 99999999999999988877 999999999999999987532 111111100 0 000000 0
Q ss_pred CccccCCCCccchhhhccCCCCCCCEEEEEeccCCCCCCceEEccHHHHHHHHHHHHHHcCcCCCCeEEEEeCCccChhH
Q psy14338 1306 PTILDTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGF 1385 (1761)
Q Consensus 1306 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 1385 (1761)
....... . ..........++++|||+|||||||+||||+++|+++.+.+.+....+++.++|+++.++|++|.+++
T Consensus 172 ~~~~~~~---~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 247 (544)
T 3o83_A 172 LDWIETP---A-ETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFML 247 (544)
T ss_dssp HHHHHSC---C-SSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHH
T ss_pred hhhhhcc---c-ccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeec
Confidence 0000000 0 00011134568999999999999999999999999999999999999999999999999999998887
Q ss_pred HH-HHHHHhhcCceEEEeCCCccccCHHHHHHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCCCCCcceEEEeec
Q psy14338 1386 AL-WVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVA 1464 (1761)
Q Consensus 1386 ~~-~~~~~L~~G~~~vl~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~~l~~Lr~v~~gG 1464 (1761)
.. .++.+|..|+++++.+. +++..+++.|+++++|+++++|+++..+++... ....++++||.+++||
T Consensus 248 ~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------~~~~~~~~lr~i~~gG 316 (544)
T 3o83_A 248 SSPGALGVLHAGGCVVMAPN----PEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAA-------QYKDQIQSLKLLQVGG 316 (544)
T ss_dssp HSSHHHHHHHTTCEEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHT-------TTHHHHTTCCEEEEES
T ss_pred chHHHHHHHHcCCEEEECCC----CCHHHHHHHHHHHCCCEEEechHHHHHHHhchh-------hccccCCcceEEEEcC
Confidence 65 58899999999999885 689999999999999999999999999987432 2234578999999999
Q ss_pred CCCChHHHHHHHHHHHhhCCCCCccccccccccccceeeecCCCCCCCceeEecccccccCcceecccCCCCccceeccc
Q psy14338 1465 EERPRIHLTSAFSKLFSALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESG 1544 (1761)
Q Consensus 1465 e~l~~~~l~~~~~~~~~~~g~~e~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG 1544 (1761)
|++++ .+.+++.+.++ +.+++.||+||++..+..... .......++|
T Consensus 317 ~~l~~-~~~~~~~~~~~------~~~~~~YG~TE~~~~~~~~~~--------------------------~~~~~~~~~G 363 (544)
T 3o83_A 317 ASFPE-SLARQVPEVLN------CKLQQVFGMAEGLVNYTRLDD--------------------------SDEQIFTTQG 363 (544)
T ss_dssp SCCCH-HHHTHHHHHHC------SEEEEEEECTTSCEEECCTTS--------------------------CHHHHHHCCC
T ss_pred CCCCH-HHHHHHHHHhC------CcEEeeeccccccceeecCCC--------------------------chhhccCCCc
Confidence 99999 88888888773 689999999997653321100 0111235699
Q ss_pred ccc-CCcEEEEEcCCCCCCCCCCcceEEEEcCCcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEeccCC
Q psy14338 1545 KLL-PGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSP 1623 (1761)
Q Consensus 1545 ~p~-~~~~~~v~d~~~~~~~p~G~~GEL~i~g~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~~~~ 1623 (1761)
+|+ ++++++|+|+ +++++|.|++|||+|+|+++++|||| +|+.|+++| ..+|||||||+|++
T Consensus 364 ~p~~~~~~~~i~d~-~~~~~~~g~~GEl~v~g~~v~~GY~~---~~~~t~~~f--------~~~g~~~TGDlg~~----- 426 (544)
T 3o83_A 364 RPISSDDEIKIVDE-QYREVPEGEIGMLATRGPYTFCGYYQ---SPEHNSQVF--------DEDNYYYSGDLVQR----- 426 (544)
T ss_dssp EESCTTCEEEEECT-TSCBCCTTCCEEEEEECTTSCSCCTT---CHHHHHHHB--------CTTCCEEEEEEEEE-----
T ss_pred eecCCCcEEEEECC-CCCCCCCCCeeEEEEecCCcchhhcC---ChhhhhhhC--------CCCCCeEcCCEEEE-----
Confidence 997 8999999995 58999999999999999999999999 999999999 46799999999999
Q ss_pred CCCCCCCCCCCCCcccceEEEEcccCCeEEeCCeecChHHHHHHHHHhccCcceeEEEee-----CCeEEEEEEeCCCch
Q psy14338 1624 AGVAGAPVPPGVSKLHDAVFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELDGNES 1698 (1761)
Q Consensus 1624 ~d~d~~~~~~g~G~~~~~l~~~GR~dd~Iki~G~rI~~~eIE~~~l~~~p~V~~a~Vv~~-----~~~~~a~v~~~~~~~ 1698 (1761)
|+| |+ |+|+||+|||||++|+||+|.|||+ +|.+||+|.+|+|++. ++.++++|+......
T Consensus 427 -~~d--------G~----l~~~GR~dd~ik~~G~~v~p~eIE~-~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~ 492 (544)
T 3o83_A 427 -TPD--------GN----LRVVGRIKDQINRGGEKIASEEIEK-LILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPEL 492 (544)
T ss_dssp -CTT--------SC----EEEEEEEC------------------------------------------------------
T ss_pred -cCC--------CC----EEEEeecCCEEEeCCEEECHHHHHH-HHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCCC
Confidence 999 99 9999999999999999999999999 8999999999999974 457888888766666
Q ss_pred hHhhHHHHHHHHHhhhcCceeeEEEEECCCCccCCCchhhhHHHHHHHHHcC
Q psy14338 1699 EALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 1750 (1761)
Q Consensus 1699 ~~~~l~~~l~~~~Lp~~~~vP~~i~~v~~~~lP~t~~GKvdR~~L~~~~~~~ 1750 (1761)
+.+++++++++..|| .||+|+.|++++ +||+|+|||+||++|++++.+.
T Consensus 493 ~~~~l~~~~~~~~l~-~~~~P~~i~~v~--~lP~t~~GKi~r~~L~~~~~~~ 541 (544)
T 3o83_A 493 KAVVLRRHLMELGIA-QYKLPDQIKLIE--SLPLTAVGKVDKKQLRSILNTS 541 (544)
T ss_dssp ----------------------------------------------------
T ss_pred CHHHHHHHHHhCCCC-cccCCcEEEEec--cCCCCCCCCCcHHHHHHHHhhc
Confidence 778899999883488 999999999999 9999999999999999988654
No 43
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=1e-69 Score=706.40 Aligned_cols=501 Identities=15% Similarity=0.236 Sum_probs=317.3
Q ss_pred ccccccccccccccCCCCcCCCCCCCceEEccCCCCceeeCHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCHHHHH
Q psy14338 1160 LYARTGYLGFLRRTSPAGVAGAPVPPGVSSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLIC 1239 (1761)
Q Consensus 1160 ~~~~~~~~~~~~~~~~~~a~~~P~~~Av~~~d~~~~~~~lTY~eL~~~a~~lA~~L~~~~Gv~~gd~V~i~~~~s~~~iv 1239 (1761)
....++.+.|.+++. ++|+++|++.+.....++++||+||+++++++|++|++. |+++||+|+|+++|++++++
T Consensus 17 ~~~~tl~~~l~~~a~-----~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-Gv~~gd~V~i~~~n~~e~~~ 90 (550)
T 3rix_A 17 LEDGTAGEQLHKAMK-----RYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRY-GLNTNHRIVVCSENSLQFFM 90 (550)
T ss_dssp CCCSCHHHHHHHHHH-----HHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHH-TCCTTCEEEEECSSCTTTHH
T ss_pred cccCCHHHHHHHHHH-----hCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHh-CCCCCCEEEEEcCCcccHHH
Confidence 345677788877765 679999976433324568999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHcCCEEEeCCCCCCCCccCChHHHHHHHHhcCCeEEEechhHHHHHhhhccc-----cccccccCCc-------
Q psy14338 1240 AFYGCLYVGAVPVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEAS-----NVVDIKSWPT------- 1307 (1761)
Q Consensus 1240 a~lA~l~aG~~~vpldp~~P~~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~-----~~~~~~~~~~------- 1307 (1761)
++|||+++|+++||++|.+|.+ ++.+++++++++++|++.+....+...... .++.......
T Consensus 91 ~~lA~~~~Gav~vpl~~~~~~~------~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (550)
T 3rix_A 91 PVLGALFIGVAVAPANDIYNER------ELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSM 164 (550)
T ss_dssp HHHHHHHHTCEEEECCTTCCHH------HHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBCBH
T ss_pred HHHHHHHcCCEEeecCCcCCHH------HHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccccCcccH
Confidence 9999999999999999988877 999999999999999998876655433211 0000000000
Q ss_pred --cccCCCCccc--hhhhccCCCCCCCEEEEEeccCCCCCCceEEccHHHHHHHHHHHHHH---cCcCCCCeEEEEeCCc
Q psy14338 1308 --ILDTDDMPKK--KLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPY 1380 (1761)
Q Consensus 1308 --~~~~~~~~~~--~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~~~~~~~~ 1380 (1761)
.......... ....+.....++++|||+|||||||+||||+++|+++++.+.+.... +++.++++++.++|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 244 (550)
T 3rix_A 165 YTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFH 244 (550)
T ss_dssp HHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTT
T ss_pred HHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHH
Confidence 0000000000 00001112245789999999999999999999999999988777655 5788889999999999
Q ss_pred cChhHHHHHHHHhhcCceEEEeCCCccccCHHHHHHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCCCCCcceEE
Q psy14338 1381 CGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTC 1460 (1761)
Q Consensus 1381 ~~~~~~~~~~~~L~~G~~~vl~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~~l~~Lr~v 1460 (1761)
|.+++ +.++.+++.|+++++.+. +++..+++.|+++++|+++++|+++..+++.. .....++++||.+
T Consensus 245 ~~~g~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------~~~~~~l~~lr~i 312 (550)
T 3rix_A 245 HGFGM-FTTLGYLICGFRVVLMYR----FEEELFLRSLQDYKIQSALLVPTLFSFFAKST-------LIDKYDLSNLHEI 312 (550)
T ss_dssp SHHHH-HHHHHHHHHTCEEEECSS----CCHHHHHHHHHHTTCSEEEECHHHHHHHHHCC-------GGGGSCCTTCCEE
T ss_pred HHHHH-HHHHHHHHcCCEEEEeCC----CCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc-------cccccCcccccEE
Confidence 98887 568889999999999874 79999999999999999999999999997632 2345678999999
Q ss_pred EeecCCCChHHHHHHHHHHHhhCCCCCccccccccccccceeeecCCCCCCCceeEecccccccCcceecccCCCCccce
Q psy14338 1461 VVVAEERPRIHLTSAFSKLFSALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCL 1540 (1761)
Q Consensus 1461 ~~gGe~l~~~~l~~~~~~~~~~~g~~e~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1540 (1761)
++|||++++ ++.++|.+.++. ..+++.||+||++..++..... ..+.
T Consensus 313 ~~gG~~l~~-~~~~~~~~~~~~-----~~v~~~YG~TE~~~~~~~~~~~---------------------------~~~~ 359 (550)
T 3rix_A 313 ASGGAPLSK-EVGEAVAKRFHL-----PGIRQGYGLTETTSAILITPEG---------------------------DDKP 359 (550)
T ss_dssp EECSSCCCH-HHHHHHHHHTTC-----SCCEEEEECGGGSSEEEECCTT---------------------------CCCT
T ss_pred EEecCCCCH-HHHHHHHHHcCC-----CccccccCcCccccceecCCCC---------------------------CCCC
Confidence 999999999 888888887642 3488999999987655432210 0123
Q ss_pred eccccccCCcEEEEEcCCCCCCCCCCcceEEEEcCCcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEec
Q psy14338 1541 LESGKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRR 1620 (1761)
Q Consensus 1541 ~~iG~p~~~~~~~v~d~~~~~~~p~G~~GEL~i~g~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~ 1620 (1761)
+++|+|+++++++|+|+++++++|.|++|||+|+|+++++|||| +|+.|++.| +.+|||||||+|++
T Consensus 360 ~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~---~~~~t~~~~--------~~~g~~~TGDl~~~-- 426 (550)
T 3rix_A 360 GAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVN---NPEATNALI--------DKDGWLHSGDIAYW-- 426 (550)
T ss_dssp TEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETT---CHHHHHHHB--------CTTSCEEEEEEEEE--
T ss_pred CCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcchhhcC---Chhhhhhhc--------CCCCCeecCcEEEE--
Confidence 46999999999999998889999999999999999999999999 999999999 46799999999999
Q ss_pred cCCCCCCCCCCCCCCCcccceEEEEcccCCeEEeCCeecChHHHHHHHHHhccCcceeEEEee-----CCeEEEEEEeC-
Q psy14338 1621 TSPAGVAGAPVPPGVSKLHDAVFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELD- 1694 (1761)
Q Consensus 1621 ~~~~d~d~~~~~~g~G~~~~~l~~~GR~dd~Iki~G~rI~~~eIE~~~l~~~p~V~~a~Vv~~-----~~~~~a~v~~~- 1694 (1761)
|+| |+ |+|+||+|||||++|+||+|.|||+ +|.+||+|.+|+|++. ++.++++|+..
T Consensus 427 ----~~d--------G~----l~~~GR~dd~ik~~G~~v~p~eIE~-~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~ 489 (550)
T 3rix_A 427 ----DED--------EH----FFIVDRLKSLIKYKGYQVAPAELES-ILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEH 489 (550)
T ss_dssp ----CTT--------CC----EEEC-------------------------------------------------------
T ss_pred ----eCC--------ce----EEEEecchheeEECCEEECHHHHHH-HHHhCCCcceEEEEEeecCCCCceEEEEEEecC
Confidence 999 99 9999999999999999999999999 8999999999999974 45678888764
Q ss_pred CCchhHhhHHHHHHHHHhhhcCceeeEEEEECCCCccCCCchhhhHHHHHHHHHcC
Q psy14338 1695 GNESEALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 1750 (1761)
Q Consensus 1695 ~~~~~~~~l~~~l~~~~Lp~~~~vP~~i~~v~~~~lP~t~~GKvdR~~L~~~~~~~ 1750 (1761)
+...+.++++++++++ |++.+|+|..|++++ +||+|+||||||++|++++.+.
T Consensus 490 ~~~~~~~~l~~~~~~~-l~~~~~~~~~i~~v~--~lP~t~~GKi~r~~L~~~~~~~ 542 (550)
T 3rix_A 490 GKTMTEKEIVDYVASQ-VTTAKKLRGGVVFVD--EVPKGLTGKLDARKIREILIKA 542 (550)
T ss_dssp --------------------------------------------------------
T ss_pred CCCCCHHHHHHHHHHh-cccccccCCceEEEe--ecCCCCCcceeHHHHHHHHHhh
Confidence 4456778999999997 774557777899999 9999999999999999998554
No 44
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=1.9e-68 Score=705.68 Aligned_cols=497 Identities=18% Similarity=0.163 Sum_probs=399.8
Q ss_pred CCCCCCceEEccC-CCCceeeCHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeCCCCC
Q psy14338 1180 GAPVPPGVSSVDT-RSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 1258 (1761)
Q Consensus 1180 ~~P~~~Av~~~d~-~~~~~~lTY~eL~~~a~~lA~~L~~~~Gv~~gd~V~i~~~~s~~~iva~lA~l~aG~~~vpldp~~ 1258 (1761)
++||++|+++.+. ...++++||+||+++++++|+.|++. |+++||+|+|+++|++++++++|||+++|++++||+|.+
T Consensus 88 ~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~-Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~ 166 (652)
T 1pg4_A 88 ENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDL-GIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGF 166 (652)
T ss_dssp HHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHH-TCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTS
T ss_pred cCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCC
Confidence 6799999996432 13468999999999999999999999 999999999999999999999999999999999999988
Q ss_pred CCCccCChHHHHHHHHhcCCeEEEechhHH---------HHHhhhcc-------ccccccccCCcccc--CC-CC-----
Q psy14338 1259 PQNLQTTLPTVRMIVDVSKSVLVLSNQNVI---------KLLKSKEA-------SNVVDIKSWPTILD--TD-DM----- 1314 (1761)
Q Consensus 1259 P~~~~~~~~rl~~il~~~~~~~vl~~~~~~---------~~~~~~~~-------~~~~~~~~~~~~~~--~~-~~----- 1314 (1761)
|.+ ++.+++++++++++|++.... ..+..... ..++.......... .. ..
T Consensus 167 ~~~------~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~ 240 (652)
T 1pg4_A 167 SPE------AVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDL 240 (652)
T ss_dssp CHH------HHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEEEHHHH
T ss_pred CHH------HHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccccCCCceeHHHH
Confidence 777 999999999999999976421 11111100 01111100000000 00 00
Q ss_pred -ccchhhhccCCCCCCCEEEEEeccCCCCCCceEEccHHHHHHHH-HHHHHHcCcCCCCeEEEEeCCccChhHHHHHHHH
Q psy14338 1315 -PKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLC-RSMKLACELYPSRHIALCLDPYCGLGFALWVLSS 1392 (1761)
Q Consensus 1315 -~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 1392 (1761)
.............+++++||+|||||||+||||+++|++++..+ ......+++.++|++++.++++|..+..+.++.+
T Consensus 241 ~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~ 320 (652)
T 1pg4_A 241 IEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGP 320 (652)
T ss_dssp HTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHH
T ss_pred HhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHH
Confidence 00000011223467999999999999999999999999988766 4556678999999999999999988887778999
Q ss_pred hhcCceEEEeCCCccccCHHHHHHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCCCCCcceEEEeecCCCChHHH
Q psy14338 1393 VYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHL 1472 (1761)
Q Consensus 1393 L~~G~~~vl~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~~l~~Lr~v~~gGe~l~~~~l 1472 (1761)
|++|+++++.+.....+++..+++.|++++||+++++|++++.|++... ......++++||.+++|||++++ ++
T Consensus 321 L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-----~~~~~~~l~sLr~i~~gGe~l~~-~~ 394 (652)
T 1pg4_A 321 LACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGD-----KAIEGTDRSSLRILGSVGEPINP-EA 394 (652)
T ss_dssp HHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGG-----GGTTTCCCTTCCEEEEESSCCCH-HH
T ss_pred HHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCc-----cccccCCcCceEEEEEecCCCCH-HH
Confidence 9999999999853334689999999999999999999999999987421 11245678999999999999999 77
Q ss_pred HHHHHHHHhhCCCCCccccccccccccceeeecCCCCCCCceeEecccccccCcceecccCCCCccceeccccccCCcEE
Q psy14338 1473 TSAFSKLFSALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLPGVKV 1552 (1761)
Q Consensus 1473 ~~~~~~~~~~~g~~e~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~ 1552 (1761)
.+++.+.+ |...+.+++.||+||++..++....... ..+.+++|+|++|+++
T Consensus 395 ~~~~~~~~---g~~~~~i~~~YG~TE~~~~~~~~~~~~~-------------------------~~~~~s~G~p~~g~~v 446 (652)
T 1pg4_A 395 WEWYWKKI---GKEKCPVVDTWWQTETGGFMITPLPGAI-------------------------ELKAGSATRPFFGVQP 446 (652)
T ss_dssp HHHHHHHT---TTTCSCEEEEBCCGGGSSCSBCCCTTTC-------------------------CBCTTCCBSBCTTCCE
T ss_pred HHHHHHHh---CCCCCcEEccccCcccccceecCCCCCc-------------------------CccCCccccCcCCCeE
Confidence 77777665 4445789999999998765443221000 0123469999999999
Q ss_pred EEEcCCCCCCCCCCcceEEEEcC--CcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEeccCCCCCCCCC
Q psy14338 1553 IIANPETKGQCGDSHLGEIWVQS--PHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVAGAP 1630 (1761)
Q Consensus 1553 ~v~d~~~~~~~p~G~~GEL~i~g--~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~~~~~d~d~~~ 1630 (1761)
+|+|++ ++++|.|+.|||+|+| |++++|||| +|+.+.+.|.. ..+|||||||+|++ |+|
T Consensus 447 ~i~d~~-g~~v~~g~~GEl~i~g~~p~~~~gY~~---~~e~~~~~~~~------~~~g~y~TGDlg~~------d~d--- 507 (652)
T 1pg4_A 447 ALVDNE-GHPQEGATEGNLVITDSWPGQARTLFG---DHERFEQTYFS------TFKNMYFSGDGARR------DED--- 507 (652)
T ss_dssp EEECTT-CCBCCSSEEEEEEECSCCTTCCCEETT---CHHHHHHHHHS------SSTTSEEEEEEEEE------CTT---
T ss_pred EEECCC-CCCcCCCceEEEEEccCCCchhhhhcC---CHHHHHhhhhh------cCCCEEECCcEEEE------cCC---
Confidence 999965 8999999999999999 799999999 99999888742 23689999999999 999
Q ss_pred CCCCCCcccceEEEEcccCCeEEeCCeecChHHHHHHHHHhccCcceeEEEee-----CCeEEEEEEeCCC-ch---hHh
Q psy14338 1631 VPPGVSKLHDAVFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELDGN-ES---EAL 1701 (1761)
Q Consensus 1631 ~~~g~G~~~~~l~~~GR~dd~Iki~G~rI~~~eIE~~~l~~~p~V~~a~Vv~~-----~~~~~a~v~~~~~-~~---~~~ 1701 (1761)
|+ |+|+||+|||||++|+||+|.|||+ +|.+||+|.+|+|++. ++.++|||++... .. ..+
T Consensus 508 -----G~----l~i~GR~dd~Ik~~G~rI~~~eIE~-~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~ 577 (652)
T 1pg4_A 508 -----GY----YWITGRVDDVLNVSGHRLGTAEIES-ALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYA 577 (652)
T ss_dssp -----SC----EEEEEESSSEEEETTEEEEHHHHHH-HHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHH
T ss_pred -----Cc----EEEEecCCCEEEECCEEECHHHHHH-HHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHHHHH
Confidence 99 9999999999999999999999999 8999999999999974 3478999987532 22 257
Q ss_pred hHHHHHHHHHhhhcCceeeEEEEECCCCccCCCchhhhHHHHHHHHHcC
Q psy14338 1702 DLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 1750 (1761)
Q Consensus 1702 ~l~~~l~~~~Lp~~~~vP~~i~~v~~~~lP~t~~GKvdR~~L~~~~~~~ 1750 (1761)
+|+++|+++ |+ .||+|+.|++++ +||+|+||||+|++|++.+.+.
T Consensus 578 ~l~~~l~~~-l~-~~~~P~~i~~v~--~lP~T~sGKi~R~~L~~~~~~~ 622 (652)
T 1pg4_A 578 EVRNWVRKE-IG-PLATPDVLHWTD--SLPKTRSGKIMRRILRKIAAGD 622 (652)
T ss_dssp HHHHHHHHH-TC-GGGCCSEEEECS--CCCBCTTSCBCHHHHHHHHHTC
T ss_pred HHHHHHHHh-CC-CCcCCeEEEEcC--CCCCCCCccchHHHHHHHHhCC
Confidence 899999997 88 999999999999 9999999999999999998654
No 45
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=5.8e-69 Score=697.71 Aligned_cols=490 Identities=16% Similarity=0.225 Sum_probs=402.3
Q ss_pred cccc-ccccccCCCCcCCCCCCCceEEccCCCCceeeCHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCHHHHHHHH
Q psy14338 1164 TGYL-GFLRRTSPAGVAGAPVPPGVSSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFY 1242 (1761)
Q Consensus 1164 ~~~~-~~~~~~~~~~a~~~P~~~Av~~~d~~~~~~~lTY~eL~~~a~~lA~~L~~~~Gv~~gd~V~i~~~~s~~~iva~l 1242 (1761)
++++ .+.+++. ++ +++|++.. ..++++||+||+++++++|+.|++. |+++||+|+|+++|++++++++|
T Consensus 26 ~l~~~~l~~~~~-----~~-~~~A~~~~---~~~~~~Ty~el~~~~~~lA~~L~~~-Gv~~gd~V~i~~~n~~e~~~~~l 95 (548)
T 2d1s_A 26 GTQLRKYMERYA-----KL-GAIAFTNA---VTGVDYSYAEYLEKSCCLGKALQNY-GLVVDGRIALCSENCEEFFIPVI 95 (548)
T ss_dssp HHHHHHHHHHHH-----HH-TCEEEEET---TTCCEEEHHHHHHHHHHHHHHHHHH-TCCTTCEEEEECSSCTTTHHHHH
T ss_pred cHHHHHHHhhhc-----cc-CCceEEEc---CCCCEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCchhHHHHHH
Confidence 4555 5555543 67 99999832 1467999999999999999999998 99999999999999999999999
Q ss_pred HHHHcCCEEEeCCCCCCCCccCChHHHHHHHHhcCCeEEEechhHHHHHhhhcc-----cccccccc---------CCcc
Q psy14338 1243 GCLYVGAVPVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEA-----SNVVDIKS---------WPTI 1308 (1761)
Q Consensus 1243 A~l~aG~~~vpldp~~P~~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~-----~~~~~~~~---------~~~~ 1308 (1761)
||+++|+++|||+|.+|.+ ++.+++++++++++|++......+..... ..++.... +..+
T Consensus 96 a~~~~Gav~vpl~~~~~~~------~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (548)
T 2d1s_A 96 AGLFIGVGVAPTNEIYTLR------ELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTF 169 (548)
T ss_dssp HHHHHTCEEEEECTTSCHH------HHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSCBTTBCBHHHH
T ss_pred HHHhhCCEEeccCCCCCHH------HHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcccccccccHHHH
Confidence 9999999999999988777 99999999999999999876555443211 11111110 0000
Q ss_pred ccCCCCccchhhhccCCCC-----C-CCEEEEEeccCCCCCCceEEccHHHHHHHHHHHHHH---cCcCCCCeEEEEeCC
Q psy14338 1309 LDTDDMPKKKLAALYRAPT-----A-EMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLA---CELYPSRHIALCLDP 1379 (1761)
Q Consensus 1309 ~~~~~~~~~~~~~~~~~~~-----~-~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~~~~~~~ 1379 (1761)
....... ........ + ++++||+|||||||+||||+++|+++.+.+.+.... +++.++|+++.++|+
T Consensus 170 ~~~~~~~----~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 245 (548)
T 2d1s_A 170 IKRNTPP----GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPF 245 (548)
T ss_dssp HHHTSCT----TCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCT
T ss_pred HhcCccc----cCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccH
Confidence 0000000 00001112 4 899999999999999999999999999998887766 788889999999999
Q ss_pred ccChhHHHHHHHHhhcCceEEEeCCCccccCHHHHHHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCCCCCcceE
Q psy14338 1380 YCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRT 1459 (1761)
Q Consensus 1380 ~~~~~~~~~~~~~L~~G~~~vl~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~~l~~Lr~ 1459 (1761)
+|.+++...++.++ .|+++++.+. +++..+++.|+++++|+++++|+++..|++.. .....++++||.
T Consensus 246 ~h~~g~~~~~~~~l-~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------~~~~~~l~~lr~ 313 (548)
T 2d1s_A 246 HHGFGMFTTLGYLI-CGFRVVMLTK----FDEETFLKTLQDYKCTSVILVPTLFAILNKSE-------LLNKYDLSNLVE 313 (548)
T ss_dssp TSHHHHHHHHHHHH-TTCEEEECCC----CCHHHHHHHHHHTTEEEEEECHHHHHHHHHCS-------CGGGSCCTTCCE
T ss_pred HHHHHHHHHHHHHh-cCcEEEEcCC----CCHHHHHHHHHHcCCcEEEecHHHHHHHHhCc-------ccccccccceeE
Confidence 88888754466777 9999999874 79999999999999999999999999997631 123457889999
Q ss_pred EEeecCCCChHHHHHHHHHHHhhCCCCCccccccccccccceeeecCCCCCCCceeEecccccccCcceecccCCCCccc
Q psy14338 1460 CVVVAEERPRIHLTSAFSKLFSALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLC 1539 (1761)
Q Consensus 1460 v~~gGe~l~~~~l~~~~~~~~~~~g~~e~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1539 (1761)
+++|||++++ .+.++|.+.++. ..+++.||+||++.+++..... ..+
T Consensus 314 i~~gG~~l~~-~~~~~~~~~~~~-----~~i~~~YG~TE~~~~~~~~~~~---------------------------~~~ 360 (548)
T 2d1s_A 314 IASGGAPLSK-EVGEAVARRFNL-----PGVRQGYGLTETTSAIIITPEG---------------------------DDK 360 (548)
T ss_dssp EEECSSCCCH-HHHHHHHHHTTC-----SCCEEEEECGGGSSEEEECCTT---------------------------CCC
T ss_pred EEEcCccCCH-HHHHHHHHHcCC-----CceeeccccccccceeeecCcc---------------------------cCC
Confidence 9999999999 888888888742 5799999999987655432110 012
Q ss_pred eeccccccCCcEEEEEcCCCCCCCCCCcceEEEEcCCcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEe
Q psy14338 1540 LLESGKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLR 1619 (1761)
Q Consensus 1540 ~~~iG~p~~~~~~~v~d~~~~~~~p~G~~GEL~i~g~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~ 1619 (1761)
.+++|+|+++++++|+|+++++++|.|++|||+|+|+++++|||| +|+.|++.| ..+|||||||+|++
T Consensus 361 ~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~---~~~~t~~~f--------~~~g~~~TGDl~~~- 428 (548)
T 2d1s_A 361 PGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVN---NPEATKELI--------DEEGWLHTGDIGYY- 428 (548)
T ss_dssp TTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETT---CHHHHHHHB--------CTTSCEEEEEEEEE-
T ss_pred CCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcC---ChHHhhhcc--------cCCcEEEccCEEEE-
Confidence 345999999999999997779999999999999999999999999 999999999 35789999999999
Q ss_pred ccCCCCCCCCCCCCCCCcccceEEEEcccCCeEEeCCeecChHHHHHHHHHhccCcceeEEEee-----CCeEEEEEEeC
Q psy14338 1620 RTSPAGVAGAPVPPGVSKLHDAVFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELD 1694 (1761)
Q Consensus 1620 ~~~~~d~d~~~~~~g~G~~~~~l~~~GR~dd~Iki~G~rI~~~eIE~~~l~~~p~V~~a~Vv~~-----~~~~~a~v~~~ 1694 (1761)
|+| |+ |+|+||+|||||++|+||+|.|||+ +|.+||+|.+|+|++. ++.++++|+..
T Consensus 429 -----~~d--------G~----l~~~GR~~d~ik~~G~~v~p~eIE~-~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~ 490 (548)
T 2d1s_A 429 -----DEE--------KH----FFIVDRLKSLIKYKGYQVPPAELES-VLLQHPSIFDAGVAGVPDPVAGELPGAVVVLE 490 (548)
T ss_dssp -----CTT--------CC----EEEEEEGGGCBCBTTCCBCHHHHHH-HHHTSTTEEEEEEEEEEETTTEEEEEEEEEEC
T ss_pred -----cCC--------Ce----EEEeccccceEEECCEEECHHHHHH-HHHhCCCccEEEEEEEEcCCCCeeeEEEEEEc
Confidence 999 99 9999999999999999999999999 8999999999999975 34788888874
Q ss_pred -CCchhHhhHHHHHHHHHhhhcCceee-EEEEECCCCccCCCchhhhHHHHHHHHHcCCCC
Q psy14338 1695 -GNESEALDLVPLVTNAVLEEHHLIVG-VAVVVDPGVVPINSRGEKQRMHLRDGFLADQLD 1753 (1761)
Q Consensus 1695 -~~~~~~~~l~~~l~~~~Lp~~~~vP~-~i~~v~~~~lP~t~~GKvdR~~L~~~~~~~~~~ 1753 (1761)
+...+.++|+++|+++ |+ .||+|. .|++++ +||+|+|||+||++|++.+. ..++
T Consensus 491 ~~~~~~~~~l~~~~~~~-l~-~~~~p~~~i~~v~--~lP~t~~GKi~r~~L~~~~~-~~i~ 546 (548)
T 2d1s_A 491 SGKNMTEKEVMDYVASQ-VS-NAKRLRGGVRFVD--EVPKGLTGKIDGRAIREILK-KPVA 546 (548)
T ss_dssp TTCCCCHHHHHHHHHTT-SC-GGGSCTTCEEECS--SCCBCTTSCBCHHHHHHHHH-SCC-
T ss_pred CCCCCCHHHHHHHHHHh-cc-ccccccccEEEcc--CCCCCCcchhHHHHHHHHHh-hhhh
Confidence 3456778999999987 88 999999 999999 99999999999999999884 4443
No 46
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1e-69 Score=709.28 Aligned_cols=497 Identities=15% Similarity=0.149 Sum_probs=314.1
Q ss_pred chhHHHHHHHHhhhcCCCcEEEEECCC----CceeEEEeHHHHHHHHHHHHHHhhcCCCCccccCCCCCCCEEEEEccCC
Q psy14338 80 PRNLEAAIQRYGSATYKAPVATVLDPN----GKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNN 155 (1761)
Q Consensus 80 ~~~l~~~~~~~a~~~pd~~Av~~~d~~----g~~~~~lTY~eL~~~a~~lA~~L~~~~~~~~~~~Gv~~g~~V~l~~~~s 155 (1761)
..++.++|+++|+++||++|+++.++. +...+++||+||+++++++|+.|+ +.|+ +||+|+|+++|+
T Consensus 19 ~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~--------~~g~-~gd~V~i~~~n~ 89 (562)
T 3ite_A 19 TVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLII--------HASL-HGRAIAVSLDRS 89 (562)
T ss_dssp CCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHH--------HTTC-SSCEEEEECCSC
T ss_pred cCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHH--------hcCC-CCCEEEEEeCCC
Confidence 467899999999999999999976521 112268999999999999999999 8889 799999999999
Q ss_pred CchhHHHHHHHHHHhCCeEEecCCCCCcCccchhHHHHHHhcCCCcEEEEcccccccCcccccccceeccCCCcceeEEe
Q psy14338 156 DPINFLCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKLTWFVT 235 (1761)
Q Consensus 156 ~~~~~vva~lAvlkaG~~~vpldp~~p~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (1761)
+++++++|||+|+|+++|||||.++.+ |+.+++++++++++|+++.....+.......++.... ..+ .
T Consensus 90 --~~~~~~~lA~~~~Gav~vpl~~~~~~~-----~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~--~ 157 (562)
T 3ite_A 90 --LIAFAIIVGIMKSGNTYVPIEAGLPND-----RKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDTKN---QSF--I 157 (562)
T ss_dssp --HHHHHHHHHHHHTTCEEEECCTTSCHH-----HHHHHHHHHTCSEEEECTTTTTTCCCCTTCEEEETTC---HHH--H
T ss_pred --HHHHHHHHHHHHhCCEEEecCCcCHHH-----HHHHHHHhcCCCEEEEccccccccccCccceeecccc---hhh--h
Confidence 999999999999999999999999976 9999999999999999876544332111111111000 000 0
Q ss_pred ccccCCCCCCCCCCCCCCCCcEEEEecCCCCCCceEEEEchHHHHHHHHHHHHH--------cCCCCCCeEEEccCCcch
Q psy14338 236 EHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQA--------CHYTEGENMVCVLDFKRE 307 (1761)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~--------~~~~~~d~~l~~~~~~~~ 307 (1761)
+...... .........++++|||+|||||||+||||+++|+++.+.+.++... +.+...+++++++|++|+
T Consensus 158 ~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (562)
T 3ite_A 158 ENLSTQD-TSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFD 236 (562)
T ss_dssp HHHHHSC-CSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTST
T ss_pred hhccccc-ccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhh
Confidence 0011111 1112234567899999999999999999999999999888766543 457888999999999999
Q ss_pred hhhHHHHHHHHhcCcEEEEeCCccccCCHHHHHHHHHhcCceEEEecCHHHHHHhhcCCCCCCCCCCceeEEEecCCCcc
Q psy14338 308 TGLWHSVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGANP 387 (1761)
Q Consensus 308 ~~~~~~i~~~L~~G~~lvi~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~~ll~~~~~~~~~l~~Lr~v~~gg~Ge~ 387 (1761)
.++.. ++.++..|+++++.+. ...+..+.+.++++++|++.++| +++..+... +.++++||.+++| |++
T Consensus 237 ~~~~~-~~~~l~~g~~~~~~~~---~~~~~~~~~~i~~~~~t~~~~~P-~~l~~~~~~----~~~~~~lr~~~~g--G~~ 305 (562)
T 3ite_A 237 VHIGE-MFLAWRFGLCAVTGER---LSMLDDLPRTFRELGVTHAGIVP-SLLDQTGLV----PEDAPHLVYLGVG--GEK 305 (562)
T ss_dssp HHHHH-HHHHHHTTCEEEECCH---HHHHHSHHHHHHHTTCCEEEECH-HHHHHHTCC----GGGSTTCCEEEEE--SSC
T ss_pred hhHHH-HHHHHhcccEEEecch---hhCHHHHHHHHHHcCCCEEEcCH-HHHhhcccC----ccccCceEEEEEe--cCC
Confidence 99985 9999999999999873 23467789999999999999996 466655332 3467899999999 999
Q ss_pred CCHHHHHHHHHHhhhCCCCCCccccccccccccceEeecCCCCCcccCCCccccccCcccceeeecCCCccCcccccccC
Q psy14338 388 WSLSSCDQFLSVFQSKGLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCG 467 (1761)
Q Consensus 388 l~~~~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG 467 (1761)
+++++.++|.+.+ |+ .++|.||+||+++.++..... ......++|
T Consensus 306 l~~~~~~~~~~~~---~~---~~~~~YG~TE~~~~~~~~~~~-----------------------------~~~~~~~~G 350 (562)
T 3ite_A 306 MTPRTQQIWSSSD---RV---ALVNVYGPTEVTIGCSAGRIL-----------------------------PDSDTRCIG 350 (562)
T ss_dssp CCHHHHHHHTTCS---SC---EEEEEECCGGGCSCSEEEECC-----------------------------TTSCTTEEE
T ss_pred CCHHHHHHHhhCC---Cc---EEEEeeccchheeeeeeeeec-----------------------------CCCCCcccc
Confidence 9999999998765 44 399999999998655543211 012356899
Q ss_pred CCCCCcEEEEEeCCCCcccCCCCCceEEEEecCCccccccCCCccccccccccccccCCCccCCCceEeecceEEEeCCC
Q psy14338 468 QVMPGCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGFLGPGG 547 (1761)
Q Consensus 468 ~p~~~~~~~I~d~~~~~~~~p~G~~GEL~i~G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~~~~dG 547 (1761)
+|+++++++|+|+++.. ++|.|++|||+|+|+++++||||+|+.|+..|. ++++||||||+|++|+||
T Consensus 351 ~p~~~~~~~i~d~~~~~-~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~-----------~g~~w~~TGDlg~~d~dG 418 (562)
T 3ite_A 351 HPLGDSVAHVLAPGSNE-HVKKGMAGELVIEGSLVANGYLNRPDAKGFCDI-----------NGRKMYRTGDIVRMDADS 418 (562)
T ss_dssp EECTTCEEEEECTTSSC-BCCTTSCEEEEEESTTSCCEESSCTTCCSEEEE-----------TTEEEEEEEEEEEECTTS
T ss_pred ccCCCCeEEEEeCCCCC-CCCCCCceEEEEeccccchhhCCCccccccccC-----------CCCEEEecCCEEEEcCCC
Confidence 99999999999986553 699999999999999999999999999987764 236799999999999999
Q ss_pred eEEEEeccCCeEEECCcccChHHHHHHHHhcCCccccccceEEEEEEecC-CCceE-EEEEEeCCC-C------------
Q psy14338 548 LVFVCGSRDGLMTVTGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIRVL-RDERI-CVIAEQRPD-C------------ 612 (1761)
Q Consensus 548 ~l~~~GR~d~qvki~G~rIe~~eIE~~l~~~~~v~~~~~~~a~v~~~~~~-~~~~l-~a~v~~~~~-~------------ 612 (1761)
+|+|+||+|||||++|+||+|.|||++|.++++++ .+++|++.+++ .++.. ++++..... .
T Consensus 419 ~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~----~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 494 (562)
T 3ite_A 419 SILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTD----IDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYK 494 (562)
T ss_dssp CEEEEEEC------------------------------------------------------------------------
T ss_pred eEEEEccccCEEeECcEEECHHHHHHHHHhcCCCc----eeEEEEEecCCCCcceEEEEEEecccccccccccccccchh
Confidence 99999999999999999999999999999987775 67888777643 44444 444433221 1
Q ss_pred -CHHHHHHHHHHHHHHhhhcceeeeeEEEEeCCCCccCC-CCCcccHHHHHHHHHcC
Q psy14338 613 -SEEESFQWMSRVLQAVDSIHQVGLYCLALVPPNYLPKT-PLGGIHLSECKRRFLEG 667 (1761)
Q Consensus 613 -~~~~l~~~l~~~Lp~y~~P~~i~~~~v~~v~~~~lP~t-~~GKidR~~L~~~~~~~ 667 (1761)
..++|+++|+++||.||+|+.| +.+++||+| +|||+||++|++++.+.
T Consensus 495 ~~~~~l~~~~~~~L~~y~~P~~i-------~~v~~lP~t~~~GKi~r~~L~~~~~~~ 544 (562)
T 3ite_A 495 EINNSLRQACEQTLPAYMVPDFI-------IPISFIPLRDTSAKTDAKALEHMFHTL 544 (562)
T ss_dssp ---------------------------------------------------------
T ss_pred hHHHHHHHHHHhhCCcccCCcEE-------EEeccCCCCCCCCcchHHHHHHHHhcc
Confidence 1348999999999999999986 567999998 89999999999988653
No 47
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=4.9e-68 Score=691.11 Aligned_cols=498 Identities=15% Similarity=0.147 Sum_probs=401.5
Q ss_pred ccccccccccCCCCcCCCCCCCceEEccCCCCceeeCHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCHHHHHHHHH
Q psy14338 1164 TGYLGFLRRTSPAGVAGAPVPPGVSSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYG 1243 (1761)
Q Consensus 1164 ~~~~~~~~~~~~~~a~~~P~~~Av~~~d~~~~~~~lTY~eL~~~a~~lA~~L~~~~Gv~~gd~V~i~~~~s~~~iva~lA 1243 (1761)
++++.|.+++...+|+++||++|+++.+..+.++++||+||+++++++|++|++.+|+++||+|+|+++|++++++++||
T Consensus 39 ~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~lA 118 (570)
T 3c5e_A 39 FASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILG 118 (570)
T ss_dssp HHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 34455555554222334899999997654223589999999999999999999865899999999999999999999999
Q ss_pred HHHcCCEEEeCCCCCCCCccCChHHHHHHHHhcCCeEEEechhHHHHHhhhccc-c----cccccc--CCccccCCCC-c
Q psy14338 1244 CLYVGAVPVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEAS-N----VVDIKS--WPTILDTDDM-P 1315 (1761)
Q Consensus 1244 ~l~aG~~~vpldp~~P~~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~-~----~~~~~~--~~~~~~~~~~-~ 1315 (1761)
|+++|+++|||+|.+|.+ ++.+++++++++++|++......+...... . ++.... .......... .
T Consensus 119 ~~~~Ga~~vpl~~~~~~~------~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (570)
T 3c5e_A 119 CIRAGLIFMPGTIQMKST------DILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLN 192 (570)
T ss_dssp HHHHTCEEEECCTTCCHH------HHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCCTTSEEHHHHHH
T ss_pred HHHcCeEEEecCCCCCHH------HHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCccccccHHHHhh
Confidence 999999999999988777 999999999999999998776655432111 0 000000 0000000000 0
Q ss_pred cchhhhccCCCCCCCEEEEEeccCCCCCCceEEccHHHHHH-HHHHHHHHcCcCCCCeEEEEeCCccChhHHHHHHHHhh
Q psy14338 1316 KKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTS-LCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVY 1394 (1761)
Q Consensus 1316 ~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~L~ 1394 (1761)
............++++|||+|||||||+||||+++|+.+.+ ..... ..+++.++|+++..+|++|..++...++.+|.
T Consensus 193 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~ 271 (570)
T 3c5e_A 193 EASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILCSLMEPWA 271 (570)
T ss_dssp HSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHH
T ss_pred cccccccccCCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHHHHHHHHH
Confidence 00000111345689999999999999999999999994432 44444 67888999999999999998888667899999
Q ss_pred cCceEEEeCCCccccCHHHHHHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCCCCCcceEEEeecCCCChHHHHH
Q psy14338 1395 SGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTS 1474 (1761)
Q Consensus 1395 ~G~~~vl~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~~l~~Lr~v~~gGe~l~~~~l~~ 1474 (1761)
.|+++++.+.. .+++..+++.|+++++|+++++|++++.+++. .....++++||.+++|||++++ .+.+
T Consensus 272 ~G~~~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--------~~~~~~~~~lr~i~~gGe~l~~-~~~~ 340 (570)
T 3c5e_A 272 LGACTFVHLLP--KFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ--------DLSSYKFPHLQNCVTVGESLLP-ETLE 340 (570)
T ss_dssp HTCEEEEECCS--SCCHHHHHHHHHHSCCCEEEECHHHHHHHHTS--------CTTTCCCTTCCEEEEESSCCCH-HHHH
T ss_pred hCceEEEecCC--CCCHHHHHHHHHHhCCeEEeccHHHHHHHHhc--------cccccccccceEEEEcCCcCCH-HHHH
Confidence 99999998743 47999999999999999999999999999763 1234568899999999999999 7888
Q ss_pred HHHHHHhhCCCCCccccccccccccceeeecCCCCCCCceeEecccccccCcceecccCCCCccceeccccccCCcEEEE
Q psy14338 1475 AFSKLFSALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLPGVKVII 1554 (1761)
Q Consensus 1475 ~~~~~~~~~g~~e~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v 1554 (1761)
+|.+.++ ..+++.||+||++.+++..... ..+.+++|+|++|++++|
T Consensus 341 ~~~~~~g------~~i~~~YG~TE~~~~~~~~~~~---------------------------~~~~~~vG~p~~~~~v~i 387 (570)
T 3c5e_A 341 NWRAQTG------LDIRESYGQTETGLTCMVSKTM---------------------------KIKPGYMGTAASCYDVQI 387 (570)
T ss_dssp HHHHHHS------CCCEEEEEETTTEEEEECCTTS---------------------------CCCTTCCCEECTTCCEEE
T ss_pred HHHHHhC------CchhhccchhhcccceecCccc---------------------------ccCCCcccccCCCceEEE
Confidence 8887763 5799999999988665432110 011245999999999999
Q ss_pred EcCCCCCCCCCCcceEEEEc-----CCcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEeccCCCCCCCC
Q psy14338 1555 ANPETKGQCGDSHLGEIWVQ-----SPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVAGA 1629 (1761)
Q Consensus 1555 ~d~~~~~~~p~G~~GEL~i~-----g~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~~~~~d~d~~ 1629 (1761)
+|++ ++++|.|++|||+|+ |+++++|||| +|+.|+++|. +|||+|||+|++ |+|
T Consensus 388 ~d~~-g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~---~~~~t~~~f~---------~~~~~TGDlg~~------d~d-- 446 (570)
T 3c5e_A 388 IDDK-GNVLPPGTEGDIGIRVKPIRPIGIFSGYVD---NPDKTAANIR---------GDFWLLGDRGIK------DED-- 446 (570)
T ss_dssp ECTT-SCBCCTTCCEEEEEECSSBCCTTCCCEETT---CHHHHHHTEE---------TTEEEEEEEEEE------CTT--
T ss_pred ECCC-CCCCCCCCCCeeEEeccCCCCchhhccccC---ChhHhhhhhc---------CCccccceeEEE------cCC--
Confidence 9965 899999999999999 9999999999 9999999992 689999999999 999
Q ss_pred CCCCCCCcccceEEEEcccCCeEEeCCeecChHHHHHHHHHhccCcceeEEEee-----CCeEEEEEEeCCCc------h
Q psy14338 1630 PVPPGVSKLHDAVFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELDGNE------S 1698 (1761)
Q Consensus 1630 ~~~~g~G~~~~~l~~~GR~dd~Iki~G~rI~~~eIE~~~l~~~p~V~~a~Vv~~-----~~~~~a~v~~~~~~------~ 1698 (1761)
|+ |+|+||+|||||++|+||+|.|||+ +|.+||+|.+|+|++. ++.++++|+..... .
T Consensus 447 ------G~----l~~~GR~dd~Ik~~G~~V~p~eIE~-~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~ 515 (570)
T 3c5e_A 447 ------GY----FQFMGRADDIINSSGYRIGPSEVEN-ALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQ 515 (570)
T ss_dssp ------SC----EEEEEEGGGCEEETTEEECHHHHHH-HHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHH
T ss_pred ------ce----EEEEecCCCEEEECCEEECHHHHHH-HHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHH
Confidence 99 9999999999999999999999999 8999999999999975 34788888874321 2
Q ss_pred hHhhHHHHHHHHHhhhcCceeeEEEEECCCCccCCCchhhhHHHHHHHHH
Q psy14338 1699 EALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFL 1748 (1761)
Q Consensus 1699 ~~~~l~~~l~~~~Lp~~~~vP~~i~~v~~~~lP~t~~GKvdR~~L~~~~~ 1748 (1761)
..++|+++|+++ || .||+|+.|++++ +||+|+|||+||++|++.+.
T Consensus 516 ~~~~l~~~l~~~-L~-~~~~P~~i~~v~--~lP~t~~GKi~R~~L~~~~~ 561 (570)
T 3c5e_A 516 LTKELQQHVKSV-TA-PYKYPRKIEFVL--NLPKTVTGKIQRAKLRDKEW 561 (570)
T ss_dssp HHHHHHHHHHHH-SC-GGGSCSEEEEES--CCCBCTTCCBCHHHHHHHHT
T ss_pred HHHHHHHHHHhh-Cc-cccCCcEEEEec--cCCCCCCcCCcHHHHHHHHH
Confidence 357899999986 88 999999999999 99999999999999999874
No 48
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=4.3e-69 Score=694.52 Aligned_cols=482 Identities=16% Similarity=0.170 Sum_probs=313.0
Q ss_pred ccccccccccccCCCCcCCCCCCCceEEccCCCCceeeCHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCHHHHHHH
Q psy14338 1162 ARTGYLGFLRRTSPAGVAGAPVPPGVSSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAF 1241 (1761)
Q Consensus 1162 ~~~~~~~~~~~~~~~~a~~~P~~~Av~~~d~~~~~~~lTY~eL~~~a~~lA~~L~~~~Gv~~gd~V~i~~~~s~~~iva~ 1241 (1761)
+.++++.|.+++. ++||++|++ ++++++||+||+++++++|++|++. |+++||+|+|+++|++++++++
T Consensus 5 ~~tl~~~l~~~a~-----~~pd~~Al~-----~~~~~~Ty~eL~~~~~~lA~~L~~~-Gv~~gd~V~i~~~~~~~~~~~~ 73 (509)
T 3ivr_A 5 DFTLADVYRRNAA-----LFPDRTAFM-----VDGVRLTHRDYLARAERLASGLLRD-GVHTGDRVAILSQNCSEMIELI 73 (509)
T ss_dssp CCCHHHHHHHHHH-----HSTTSEEEE-----ETTEEEEHHHHHHHHHHHHHHHHHT-TCCTTCEEEEECCSCHHHHHHH
T ss_pred cCCHHHHHHHHHH-----HCCCceEEE-----ECCcEEcHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCHHHHHHH
Confidence 3567777777765 779999999 6789999999999999999999999 9999999999999999999999
Q ss_pred HHHHHcCCEEEeCCCCCCCCccCChHHHHHHHHhcCCeEEEechhHHHHHhhhcc-cc----ccccc----cCCccccCC
Q psy14338 1242 YGCLYVGAVPVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEA-SN----VVDIK----SWPTILDTD 1312 (1761)
Q Consensus 1242 lA~l~aG~~~vpldp~~P~~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~-~~----~~~~~----~~~~~~~~~ 1312 (1761)
|||+++|+++|||||.+|.+ ++.+++++++++++|++......+..... .. .+... .+.......
T Consensus 74 lA~~~~Ga~~vpl~~~~~~~------~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (509)
T 3ivr_A 74 GAVALIGAILLPVNYRLNAD------EIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGPFAPFKDLA 147 (509)
T ss_dssp HHHHHTTCEEEECCTTSCHH------HHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCSSCEEGGGTC
T ss_pred HHHHHhCCEEEecCCCCCHH------HHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCcChhhHhhcc
Confidence 99999999999999988887 99999999999999999887655322211 00 00000 011111000
Q ss_pred CCccchhhhccCCCCCCCEEEEEeccCCCCCCceEEccHHHHHHHHHHHHHHcCcCCCCeEEEEeCCccChhHHHHHHHH
Q psy14338 1313 DMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSS 1392 (1761)
Q Consensus 1313 ~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 1392 (1761)
...........+++++||+|||||||.||||+++|+++.+.+.+....+++.++|+++..+|++|.+++ ...+.+
T Consensus 148 ----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~ 222 (509)
T 3ivr_A 148 ----SDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGL-GLMLTL 222 (509)
T ss_dssp ----CCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHH-HHHHHH
T ss_pred ----CCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHH-HHHHHH
Confidence 001112245678999999999999999999999999999999999999999999999999999888887 445666
Q ss_pred hhcCceEEEeCCCccccCHHHHHHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCCCCCcceEEEeecCCCChHHH
Q psy14338 1393 VYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHL 1472 (1761)
Q Consensus 1393 L~~G~~~vl~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~~l~~Lr~v~~gGe~l~~~~l 1472 (1761)
++.|+++++.. .+++..+++.|+++++|+++++|+++..+++.. ...++++||.++.||++ .+
T Consensus 223 ~~~~g~~~~~~----~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~---------~~~~l~~lr~~~~~g~~----~~ 285 (509)
T 3ivr_A 223 QQAGGASVIAA----KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA---------APAQLASLRAVTGLDTP----ET 285 (509)
T ss_dssp HHHTCEEEECS----SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC---------CGGGGTTCCEEEEECCH----HH
T ss_pred HHhCCcEEEec----ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc---------cccchhhhheecccCCh----HH
Confidence 66677777665 379999999999999999999999999998742 34567899999999987 56
Q ss_pred HHHHHHHHhhCCCCCccccccccccccceeeecCCCCCCCceeEecccccccCcceecccCCCCccceeccccccCCcEE
Q psy14338 1473 TSAFSKLFSALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLPGVKV 1552 (1761)
Q Consensus 1473 ~~~~~~~~~~~g~~e~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~ 1552 (1761)
.+++.+.++. ..+++.||+||++.+++.... . .. ..++|+|++|+++
T Consensus 286 ~~~~~~~~~~-----~~~~~~YG~TE~~~~~~~~~~-----------~------------~~-----~~~~G~p~~~~~~ 332 (509)
T 3ivr_A 286 IERFEATCPN-----ATFWATFGQSETSGLSTFAPY-----------R------------DR-----PKSAGRPLFWRTV 332 (509)
T ss_dssp HHHHHHHCTT-----CEEEEEEEEGGGTEEEEEEEG-----------G------------GS-----TTSCCEECTTCEE
T ss_pred HHHHHHhcCC-----CeEEcccCccccccccccCcc-----------c------------cC-----CCcccccCCCcEE
Confidence 6777776632 689999999998775532110 0 00 1238999999999
Q ss_pred EEEcCCCCCCCCCCcceEEEEcCCcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEeccCCCCCCCCCCC
Q psy14338 1553 IIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVAGAPVP 1632 (1761)
Q Consensus 1553 ~v~d~~~~~~~p~G~~GEL~i~g~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~~~~~d~d~~~~~ 1632 (1761)
+|+|++ ++++|.|++|||+|+|+++++|||| +|+.|+++| .+|||||||+|++ |+|
T Consensus 333 ~i~d~~-~~~~~~g~~GEl~v~g~~~~~gY~~---~~~~t~~~f---------~~g~~~TGDl~~~------~~d----- 388 (509)
T 3ivr_A 333 AVVDAE-DRPLPPGEVGEIVLRGPTVFKGYWN---NAAATQHAF---------RNGWHHTGDMGRF------DAD----- 388 (509)
T ss_dssp EEECTT-SCBCCTTCCEEEEEESTTSCCEETT---CHHHHHHHT---------GGGSEEEEEEEEE------CTT-----
T ss_pred EEECCC-CCCCCCCCceEEEEecCCccccccC---CHHHhHHHh---------hcCCcccccEEEE------CCC-----
Confidence 999966 8999999999999999999999999 999999999 3689999999999 999
Q ss_pred CCCCcccceEEEEccc--CCeEEeCCeecChHHHHHHHHHhccCcceeEEEee-----CCeEEEEEEeC-CCchhHhhHH
Q psy14338 1633 PGVSKLHDAVFVVGAL--DETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELD-GNESEALDLV 1704 (1761)
Q Consensus 1633 ~g~G~~~~~l~~~GR~--dd~Iki~G~rI~~~eIE~~~l~~~p~V~~a~Vv~~-----~~~~~a~v~~~-~~~~~~~~l~ 1704 (1761)
|+ ++|+||+ ||+||++|+||+|.|||+ +|.+||+|.+|+|++. ++.++++|+.. +...+.++|+
T Consensus 389 ---G~----l~~~GR~d~~d~ik~~G~~v~p~eiE~-~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~ 460 (509)
T 3ivr_A 389 ---GY----LFYAGRAPEKELIKTGGENVYPAEVEG-ALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALA 460 (509)
T ss_dssp ---SC----EEEEEEC----------------------------------------------------------------
T ss_pred ---ce----EEEeCCCCcceeEEECCEEECHHHHHH-HHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHHHH
Confidence 99 9999999 999999999999999999 8999999999999974 44678888764 4456778999
Q ss_pred HHHHHHHhhhcCceeeEEEEECCCCccCCCchhhhHHHHHHHHHcCC
Q psy14338 1705 PLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQ 1751 (1761)
Q Consensus 1705 ~~l~~~~Lp~~~~vP~~i~~v~~~~lP~t~~GKvdR~~L~~~~~~~~ 1751 (1761)
++|+++ || .||+|+.|++++ +||+|+||||||++|++.+.+..
T Consensus 461 ~~l~~~-L~-~~~~P~~i~~v~--~lP~t~~GKidr~~Lr~~~~~~~ 503 (509)
T 3ivr_A 461 EFVASL-IA-RYKKPKHVVFVE--ALPKDAKGAIDRAAVKTAHGQEG 503 (509)
T ss_dssp -----------------------------------------------
T ss_pred HHHHhh-Cc-ccCCCcEEEEec--CCCCCCCCCccHHHHHHHHhhcc
Confidence 999997 88 999999999999 99999999999999999886543
No 49
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=3e-68 Score=686.50 Aligned_cols=491 Identities=15% Similarity=0.204 Sum_probs=401.5
Q ss_pred ccccccccCCCCcCCCCCCCceEEccCCCCceeeCHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCHHHHHHHHHHH
Q psy14338 1166 YLGFLRRTSPAGVAGAPVPPGVSSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCL 1245 (1761)
Q Consensus 1166 ~~~~~~~~~~~~a~~~P~~~Av~~~d~~~~~~~lTY~eL~~~a~~lA~~L~~~~Gv~~gd~V~i~~~~s~~~iva~lA~l 1245 (1761)
.+.|.+++ +++|+++|++ ++++++||+||+++++++|++|.+..|+++|++|+++++|++++++++|||+
T Consensus 4 ~~~l~~~a-----~~~p~~~Al~-----~~~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~ 73 (511)
T 3e7w_A 4 LHAIQTHA-----ETYPQTDAFR-----SQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSV 73 (511)
T ss_dssp HHHHHHHH-----HHSTTSEEEE-----ETTEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHCCCCeEEE-----cCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHH
Confidence 34444454 4789999999 6789999999999999999999885478999999999999999999999999
Q ss_pred HcCCEEEeCCCCCCCCccCChHHHHHHHHhcCCeEEEechhHHHHHhhhccccccccccCCccccCCCCccchhhhccCC
Q psy14338 1246 YVGAVPVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDMPKKKLAALYRA 1325 (1761)
Q Consensus 1246 ~aG~~~vpldp~~P~~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1325 (1761)
++|+++|||+|.+|.+ ++.+++++++++++|++...... ... ..+....+..+....... ......
T Consensus 74 ~~G~~~vpl~~~~~~~------~l~~~l~~~~~~~li~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~----~~~~~~ 139 (511)
T 3e7w_A 74 KAGHPYIPVDLSIPSE------RIAKIIESSGAELLIHAAGLSID--AVG--QQIQTVSAEELLENEGGS----VSQDQW 139 (511)
T ss_dssp HHTCCEEEEETTSCHH------HHHHHHHHHTCCEEEESSSCCTT--CCC--CSSCEEEHHHHHTSCSCC----CCGGGS
T ss_pred HhCCEEEecCCCChHH------HHHHHHHhCCCCEEEecccccch--hcc--cccceecHhhhhccccCC----cccccc
Confidence 9999999999988777 99999999999999996542110 000 000000111111111100 111234
Q ss_pred CCCCCEEEEEeccCCCCCCceEEccHHHHHHHHHHHHHHcCcCCCCeEEEEeCCccChhHHHHHHHHhhcCceEEEeCCC
Q psy14338 1326 PTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPS 1405 (1761)
Q Consensus 1326 ~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~L~~G~~~vl~~~~ 1405 (1761)
..+++++||+|||||||.||||+++|+++.+.+.+....+++.++|+++.++|++|+.++ ..++.+|+.|+++++.+..
T Consensus 140 ~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~ 218 (511)
T 3e7w_A 140 VKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSV-MDLYPCLQSGGTLHCVTKD 218 (511)
T ss_dssp CCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHH-HHHHHHHHTTCEEEECCHH
T ss_pred CCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHH-HHHHHHHhcCCEEEEcChh
Confidence 568899999999999999999999999999999999999999999999999999888886 6789999999999998752
Q ss_pred ccccCHHHHHHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCCCCCcceEEEeecCCCChHHHHHHHHHHHhhCCC
Q psy14338 1406 EVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALGL 1485 (1761)
Q Consensus 1406 ~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~~l~~Lr~v~~gGe~l~~~~l~~~~~~~~~~~g~ 1485 (1761)
..+++..+++.|+++++|+++++|+++..+++. .......++++|.+++|||++++ .+.+++.+.|+.
T Consensus 219 -~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-------~~~~~~~~~~l~~~~~~G~~l~~-~~~~~~~~~~~~--- 286 (511)
T 3e7w_A 219 -AVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMD-------PGFSQDLLPHADTFMFCGEVLPV-SVAKALLERFPK--- 286 (511)
T ss_dssp -HHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTS-------TTCSTTTCTTCCEEEECSSCCCH-HHHHHHHHHCTT---
T ss_pred -hhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhc-------cccccccCCcccEEEEecCCCCH-HHHHHHHHHCCC---
Confidence 236899999999999999999999999998763 22345678899999999999999 888888887743
Q ss_pred CCccccccccccccceeeecCCCCCCCceeEecccccccCcceecccCCCCccceeccccccCCcEEEEEcCCCCCCCCC
Q psy14338 1486 SPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLPGVKVIIANPETKGQCGD 1565 (1761)
Q Consensus 1486 ~e~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~~~p~ 1565 (1761)
..+++.||+||++..++... ...... ......++|+|++|++++|+|++ ++++|.
T Consensus 287 --~~i~~~YG~TE~~~~~~~~~---------~~~~~~-------------~~~~~~~~G~~~~~~~~~i~d~~-g~~~~~ 341 (511)
T 3e7w_A 287 --AKIFNTYGPTEATVAVTSVE---------ITNDVI-------------SRSESLPVGFAKPDMNIFIMDEE-GQPLPE 341 (511)
T ss_dssp --CEEEECCCCGGGSSCSEEEE---------ECHHHH-------------TTCSSCCCBEECTTCEEEEECTT-SCBCCT
T ss_pred --cEEEeCcccchheeeeeEEe---------cccccc-------------ccCCcCCCcceeCCCEEEEECCC-CCCCCC
Confidence 68999999999865433110 000000 00123469999999999999966 899999
Q ss_pred CcceEEEEcCCcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEeccCCCCCCCCCCCCCCCcccceEEEE
Q psy14338 1566 SHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDAVFVV 1645 (1761)
Q Consensus 1566 G~~GEL~i~g~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~~~~~d~d~~~~~~g~G~~~~~l~~~ 1645 (1761)
|++|||+|+|+++++|||| +|++|++.|..+ ++.+||||||+|++ + | |+ |+|+
T Consensus 342 g~~GEl~v~g~~v~~GY~~---~~~~t~~~f~~~-----~g~~~~~TGDlg~~------~-d--------G~----l~~~ 394 (511)
T 3e7w_A 342 GEKGEIVIAGPSVSRGYLG---EPELTEKAFFSH-----EGQWAYRTGDAGFI------Q-D--------GQ----IFCQ 394 (511)
T ss_dssp TCCEEEEEESTTSCCCBTT---CHHHHHHHEEES-----SSSEEEEEEEEEEE------E-T--------TE----EEEE
T ss_pred CCceEEEEecCccChhhCC---CcccchhhhcCC-----CCCEEEeCCCeEEc------c-C--------Ce----EEEE
Confidence 9999999999999999999 999999999642 35668999999999 5 7 99 9999
Q ss_pred cccCCeEEeCCeecChHHHHHHHHHhccCcceeEEEee-----CCeEEEEEEeCCCch-----hHhhHHHHHHHHHhhhc
Q psy14338 1646 GALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELDGNES-----EALDLVPLVTNAVLEEH 1715 (1761)
Q Consensus 1646 GR~dd~Iki~G~rI~~~eIE~~~l~~~p~V~~a~Vv~~-----~~~~~a~v~~~~~~~-----~~~~l~~~l~~~~Lp~~ 1715 (1761)
||+|||||++|+||+|.|||+ +|.+||+|.+|+|++. ++.++++|+...... ..++++++|+++ || .
T Consensus 395 GR~~d~ik~~G~~v~p~eIE~-~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~-L~-~ 471 (511)
T 3e7w_A 395 GRLDFQIKLHGYRMELEEIEF-HVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAAS-LP-A 471 (511)
T ss_dssp EESSSEEEETTEEEEHHHHHH-HHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHH-SC-G
T ss_pred ccccCEEEECCEEeCHHHHHH-HHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchhhHHHHHHHHHHhh-Cc-h
Confidence 999999999999999999999 8999999999999974 347888888754321 136799999987 88 9
Q ss_pred CceeeEEEEECCCCccCCCchhhhHHHHHHHHHcC
Q psy14338 1716 HLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 1750 (1761)
Q Consensus 1716 ~~vP~~i~~v~~~~lP~t~~GKvdR~~L~~~~~~~ 1750 (1761)
||+|+.|++++ +||+|+||||||++|++.+.+.
T Consensus 472 ~~~P~~~~~v~--~lP~t~~GKi~R~~L~~~~~~~ 504 (511)
T 3e7w_A 472 YMIPRKFIYQD--HIQMTANGKIDRKRIGEEVLVR 504 (511)
T ss_dssp GGSCSEEEECS--CCCBCTTSCBCHHHHHHHHHHH
T ss_pred hhCCeeEEEec--cCCCCCCcCccHHHHHhHHhhh
Confidence 99999999999 9999999999999999998654
No 50
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=7.2e-69 Score=696.29 Aligned_cols=502 Identities=19% Similarity=0.211 Sum_probs=364.8
Q ss_pred cccccccccccCCCCcCCCCCCCceEEccCCCCceeeCHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCHHHHHHHH
Q psy14338 1163 RTGYLGFLRRTSPAGVAGAPVPPGVSSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFY 1242 (1761)
Q Consensus 1163 ~~~~~~~~~~~~~~~a~~~P~~~Av~~~d~~~~~~~lTY~eL~~~a~~lA~~L~~~~Gv~~gd~V~i~~~~s~~~iva~l 1242 (1761)
.++++.|.+++. ++|+++|+++.+. ++++++||+||+++++++|++|++. |+++||+|+|+++|++++++++|
T Consensus 18 ~~l~~~l~~~a~-----~~p~~~a~~~~~~-~~~~~~Ty~el~~~~~~lA~~L~~~-Gv~~gd~V~i~~~n~~e~~~~~l 90 (541)
T 1v25_A 18 LNLWDFLERAAA-----LFGRKEVVSRLHT-GEVHRTTYAEVYQRARRLMGGLRAL-GVGVGDRVATLGFNHFRHLEAYF 90 (541)
T ss_dssp CCTHHHHHHHHH-----HSTTCEEEEECTT-SCEEEEEHHHHHHHHHHHHHHHHHT-TCCTTCEEEEECCSSHHHHHHHH
T ss_pred CCHHHHHHHHHH-----hCCCceEEEEecC-CCCceecHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCcHHHHHHHH
Confidence 456676766654 6799999986543 3578999999999999999999999 99999999999999999999999
Q ss_pred HHHHcCCEEEeCCCCCCCCccCChHHHHHHHHhcCCeEEEechhHHHHHhhhcccc-----ccccccCC--ccccCCCCc
Q psy14338 1243 GCLYVGAVPVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASN-----VVDIKSWP--TILDTDDMP 1315 (1761)
Q Consensus 1243 A~l~aG~~~vpldp~~P~~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~-----~~~~~~~~--~~~~~~~~~ 1315 (1761)
||+++|+++|||+|.+|.+ ++.+++++++++++|++......+....... ++...... .........
T Consensus 91 A~~~~Gav~vpl~~~~~~~------~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (541)
T 1v25_A 91 AVPGMGAVLHTANPRLSPK------EIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEAL 164 (541)
T ss_dssp HHHHTTCEEEECCTTSCHH------HHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHC
T ss_pred HHHhcCcEEEecCcccCHH------HHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCcccccHHHHh
Confidence 9999999999999988777 9999999999999999988766554332110 00000000 000000000
Q ss_pred cchhhhccCCCCCCCEEEEEeccCCCCCCceEEccHHHHHHHHHH--HHHHcCcCCCCeEEEEeCCccChhHHHHHHHHh
Q psy14338 1316 KKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRS--MKLACELYPSRHIALCLDPYCGLGFALWVLSSV 1393 (1761)
Q Consensus 1316 ~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~L 1393 (1761)
. .........+++++||+|||||||+||||+++|+++++.+.. ....++++++|+++.++|++|..++ ..++.++
T Consensus 165 ~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~-~~~~~~l 241 (541)
T 1v25_A 165 G--EEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAW-CLPYAAT 241 (541)
T ss_dssp C--SCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHH-THHHHHH
T ss_pred h--ccCCcccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHH-HHHHHHH
Confidence 0 000113456789999999999999999999999999887665 2345678899999999999887776 5678899
Q ss_pred hcCceEEEeCCCccccCHHHHHHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCCCCCcceEEEeecCCCChHHHH
Q psy14338 1394 YSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLT 1473 (1761)
Q Consensus 1394 ~~G~~~vl~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~~l~~Lr~v~~gGe~l~~~~l~ 1473 (1761)
+.|+++++.+. .+++..+++.|+++++|+++++|+++..|++.. .....++++||.+++|||++++ .+.
T Consensus 242 ~~G~~~v~~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------~~~~~~l~~lr~i~~gG~~l~~-~~~ 310 (541)
T 1v25_A 242 LVGAKQVLPGP---RLDPASLVELFDGEGVTFTAGVPTVWLALADYL-------ESTGHRLKTLRRLVVGGSAAPR-SLI 310 (541)
T ss_dssp HHTCEEEECTT---CCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHH-------HHHTCCCSSCCEEEECSSCCCH-HHH
T ss_pred hcCceEEeeCC---CCCHHHHHHHHHhcCeeEEecchHHHHHHHhhh-------hccCCcchhccEEEECCCCCCH-HHH
Confidence 99999999874 369999999999999999999999999997642 2235678999999999999999 777
Q ss_pred HHHHHHHhhCCCCCccccccccccccceeeecCCCCCCCceeEecccccccCcceecccCCCCccceeccccccCCcEEE
Q psy14338 1474 SAFSKLFSALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLPGVKVI 1553 (1761)
Q Consensus 1474 ~~~~~~~~~~g~~e~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ 1553 (1761)
++| +.+ | ..+++.||+||++.+++........ ..+..+ .......++|+|++|++++
T Consensus 311 ~~~-~~~---g---~~~~~~YG~TE~~~~~~~~~~~~~~-------~~~~~~---------~~~~~~~~~G~p~~~~~~~ 367 (541)
T 1v25_A 311 ARF-ERM---G---VEVRQGYGLTETSPVVVQNFVKSHL-------ESLSEE---------EKLTLKAKTGLPIPLVRLR 367 (541)
T ss_dssp HHH-HHT---T---CEEEEEEECGGGSSEEEECCCCGGG-------TTSCHH---------HHHHHHTSCBEECTTCEEE
T ss_pred HHH-HHh---C---Cceeecccccccccceecccccccc-------cccCcc---------ccccccCCCCCcCCCcEEE
Confidence 777 443 3 5799999999987665443211000 000000 0001235699999999999
Q ss_pred EEcCCCCCCCCC--CcceEEEEcCCcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEeccCCCCCCCCCC
Q psy14338 1554 IANPETKGQCGD--SHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVAGAPV 1631 (1761)
Q Consensus 1554 v~d~~~~~~~p~--G~~GEL~i~g~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~~~~~d~d~~~~ 1631 (1761)
|+|++ ++++|. |++|||+|+||++++|||| +|++|+++|. .+|||||||+|++ |+|
T Consensus 368 i~d~~-g~~~~~~~~~~GEl~v~g~~v~~GY~~---~p~~t~~~f~--------~~g~~~TGDlg~~------d~d---- 425 (541)
T 1v25_A 368 VADEE-GRPVPKDGKALGEVQLKGPWITGGYYG---NEEATRSALT--------PDGFFRTGDIAVW------DEE---- 425 (541)
T ss_dssp EECTT-SCBCCSSSCCCEEEEEESTTSBSSCBT---CHHHHHTTBC--------TTSCEEEEEEEEE------CTT----
T ss_pred EECCC-CCCCCCCCCcceEEEEeCcchhccccC---Chhhhhhhcc--------CCCCeEcCCEEEE------cCC----
Confidence 99965 788885 3799999999999999999 9999999993 4789999999999 999
Q ss_pred CCCCCcccceEEEEcccCCeEEeCCeecChHHHHHHHHHhccCcceeEEEee-----CCeEEEEEEeCCCchhHhhHHHH
Q psy14338 1632 PPGVSKLHDAVFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELDGNESEALDLVPL 1706 (1761)
Q Consensus 1632 ~~g~G~~~~~l~~~GR~dd~Iki~G~rI~~~eIE~~~l~~~p~V~~a~Vv~~-----~~~~~a~v~~~~~~~~~~~l~~~ 1706 (1761)
|+ |+|+||+|||||++|+||+|.|||+ +|.+||+|.+|+|++. ++.++++|+..+...+.++++++
T Consensus 426 ----G~----l~~~GR~~d~ik~~G~~v~p~eIE~-~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~l~~~ 496 (541)
T 1v25_A 426 ----GY----VEIKDRLKDLIKSGGEWISSVDLEN-ALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEH 496 (541)
T ss_dssp ----CC----EEEEEESSCEEEETTEEEEHHHHHC-C----------CEEEEECSSSSEEEEECC---------------
T ss_pred ----ce----EEEeecccceeeeCCEEECHHHHHH-HHHhCCCceEEEEEEecCCCcCceEEEEEEECCCCCCHHHHHHH
Confidence 99 9999999999999999999999999 8999999999999975 45788888876555667889999
Q ss_pred HHHHHhhhcCceeeEEEEECCCCccCCCchhhhHHHHHHHHH
Q psy14338 1707 VTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFL 1748 (1761)
Q Consensus 1707 l~~~~Lp~~~~vP~~i~~v~~~~lP~t~~GKvdR~~L~~~~~ 1748 (1761)
+++..|| .||+|+.|++++ +||+|+|||+||++|++.+.
T Consensus 497 ~~~~~L~-~~~~P~~i~~v~--~lP~t~~GKi~r~~L~~~~~ 535 (541)
T 1v25_A 497 LLKAGFA-KWQLPDAYVFAE--EIPRTSAGKFLKRALREQYK 535 (541)
T ss_dssp ----CCC-TTTSCSBC----------------CCTTHHHHST
T ss_pred HHhccCc-cccCCcEEEEeC--CCCCCCccCeeHHHHHHHHH
Confidence 9882388 999999999999 99999999999999999873
No 51
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=2.9e-68 Score=699.80 Aligned_cols=533 Identities=23% Similarity=0.335 Sum_probs=410.1
Q ss_pred chhHHHHHHHHhhhcCCCcEEEEECCCCceeEEEeHHHHHHHHHHHHHHhhcCCCCccccCCCCCCCEEEEEccCCCchh
Q psy14338 80 PRNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPIN 159 (1761)
Q Consensus 80 ~~~l~~~~~~~a~~~pd~~Av~~~d~~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~~~~~~Gv~~g~~V~l~~~~s~~~~ 159 (1761)
..+|.++|+++++++|+.+++.. .+.+.+++||+||+++++++|+.|+ ++|+++||+|+|+++|+ ++
T Consensus 20 ~~tl~~~l~~~a~~~p~~~~~~~---~~~~~~~~Ty~eL~~~~~~lA~~L~--------~~Gv~~gd~V~i~~~~~--~~ 86 (576)
T 3gqw_A 20 FPTLVDALDYAALSSAGMNFYDR---RCQLEDQLEYQTLKARAEAGAKRLL--------SLNLKKGDRVALIAETS--SE 86 (576)
T ss_dssp CSSHHHHHHHHTTSSCEEEEECT---TSCEEEEEEHHHHHHHHHHHHHHHH--------HTCCCTTCEEEEECCSS--HH
T ss_pred CCcHHHHHHHHhhCCCCeEEeCC---CCCceeEEcHHHHHHHHHHHHHHHH--------HcCCCCCCEEEEEcCCc--HH
Confidence 46899999999999998777642 2222379999999999999999999 89999999999999999 99
Q ss_pred HHHHHHHHHHhCCeEEecCCCCCcCc--cchhHHHHHHhcCCCcEEEEcccccccCcccccccceeccCCCcceeEEecc
Q psy14338 160 FLCAFYGCIFAGIVPVPIEVPLTRRD--AGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKLTWFVTEH 237 (1761)
Q Consensus 160 ~vva~lAvlkaG~~~vpldp~~p~~~--~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (1761)
+++++|||+++|+++||+++.++..+ .+.+|+.+++++++++++|+++.....+...... .+.........
T Consensus 87 ~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 159 (576)
T 3gqw_A 87 FVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHD-------NPELHVLSHAW 159 (576)
T ss_dssp HHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGG-------CTTCEEEEHHH
T ss_pred HHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhcc-------CCcceecchhh
Confidence 99999999999999999999998321 1134899999999999999998755433222110 00111111111
Q ss_pred ccCCCCCCCCCCCCCCCCcEEEEecCCCCCCceEEEEchHHHHHHHHHHHHH-cCCCCCCeEEEccCCcchhhhHHHHHH
Q psy14338 238 LAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQA-CHYTEGENMVCVLDFKRETGLWHSVLT 316 (1761)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~-~~~~~~d~~l~~~~~~~~~~~~~~i~~ 316 (1761)
...............++++|||+|||||||+||||+++|+++++.+.+.... ++++++|++++++|++|+++++..++.
T Consensus 160 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~ 239 (576)
T 3gqw_A 160 FKALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFLLT 239 (576)
T ss_dssp HHTSCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHHTHH
T ss_pred hhcccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHHHHHH
Confidence 1111111122334578999999999999999999999999999988887665 899999999999999999999866788
Q ss_pred HHhcCcEEEEeCCccccCCHHHHHHHHHhcCceEEEecCHHHHHHhhcC---CCCCCCCCCceeEEEecCCCccCCHHHH
Q psy14338 317 SVLNGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLAT---KDHKDISLSSLRLLLVGDGANPWSLSSC 393 (1761)
Q Consensus 317 ~L~~G~~lvi~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~~ll~~---~~~~~~~l~~Lr~v~~gg~Ge~l~~~~~ 393 (1761)
++..|+++++.+...+.+++..+++.|+++++|++.++| +++..+... ......++++||.+++| |+++++++.
T Consensus 240 ~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p-~~~~~l~~~~~~~~~~~~~l~~lr~~~~g--g~~l~~~~~ 316 (576)
T 3gqw_A 240 PVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPP-FGYELCQRRVNEKDLAELDLSCWRVAGIG--AEPISAEQL 316 (576)
T ss_dssp HHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECH-HHHHHHHHSCCHHHHTTCCCTTCCEEEEC--SSCCCHHHH
T ss_pred HHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCH-HHHHHHHHHhcccccccCChhhhHhhhcc--CccCCHHHH
Confidence 899999999887433336899999999999999999985 466544332 22345678999999999 999999999
Q ss_pred HHHHHHhhhCCCCCCccccccccccccceEeecCCCCCcccCCC--ccccccCcccceeeecCCCccCcccccccCCCCC
Q psy14338 394 DQFLSVFQSKGLRPDAICPCASSSECLTVSVRRPGRAGVNATGR--GVLSMSGLSYGVVRVDQENSLTSLTLQDCGQVMP 471 (1761)
Q Consensus 394 ~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~ 471 (1761)
++|.+.++..+++...++|.||+||++.+++......+...... ......+. .+. ............++|+|++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~-~~~~~~~~~~~~~~G~p~~ 392 (576)
T 3gqw_A 317 HQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGK---AVA-PGAETRAVSTFVNCGKALP 392 (576)
T ss_dssp HHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCB---CCC-CCTTCCCEEEEEBCCEECT
T ss_pred HHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCc---ccc-cCccccCccceeecCCcCC
Confidence 99999986544433469999999999987776542211000000 00000000 000 0000111123458999999
Q ss_pred CcEEEEEeCCCCcccCCCCCceEEEEecCCccccccCCCccccccccccccccCCCccCCCceEeecceEEEeCCCeEEE
Q psy14338 472 GCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGFLGPGGLVFV 551 (1761)
Q Consensus 472 ~~~~~I~d~~~~~~~~p~G~~GEL~i~G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~~~~dG~l~~ 551 (1761)
+++++|+|++++ ++|.|++|||+|+|+++++||||+|+.|++.|. +|||||||+|++ +||+|+|
T Consensus 393 ~~~~~i~d~~g~--~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~~-------------~g~~~TGDl~~~-~dG~l~~ 456 (576)
T 3gqw_A 393 EHGIEIRNEAGM--PVAERVVGHICISGPSLMSGYFGDQVSQDEIAA-------------TGWLDTGDLGYL-LDGYLYV 456 (576)
T ss_dssp TCEEEEECTTSC--BCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHH-------------HSCEEEEEEEEE-ETTEEEE
T ss_pred CCeEEEECCCCC--CCCCCCeEEEEEeCccccccccCCccccccccC-------------CCeeeccceEEE-ECCEEEE
Confidence 999999999887 599999999999999999999999999988774 789999999999 6999999
Q ss_pred EeccCCeEEECCcccChHHHHHHHHhcCCccccccceEEEEEEecCCCceEEEEEEeCCC--CCHHHHHHHHHHHH-HHh
Q psy14338 552 CGSRDGLMTVTGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIRVLRDERICVIAEQRPD--CSEEESFQWMSRVL-QAV 628 (1761)
Q Consensus 552 ~GR~d~qvki~G~rIe~~eIE~~l~~~~~v~~~~~~~a~v~~~~~~~~~~l~a~v~~~~~--~~~~~l~~~l~~~L-p~y 628 (1761)
+||+|||||++|+||+|.|||++|.+++.| .+++|++..+.. +.+++++..... ...++++++++++| +.|
T Consensus 457 ~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V-----~~~~vv~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 530 (576)
T 3gqw_A 457 TGRIKDLIIIRGRNIWPQDIEYIAEQEPEI-----HSGDAIAFVTAQ-EKIILQIQCRISDEERRGQLIHALAARIQSEF 530 (576)
T ss_dssp EEETTTCEEETTEEECHHHHHHHHTTSSSC-----CTTSEEEEECTT-SCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EecCcceEEECCEEECHHHHHHHHHhCccc-----ccccEEEEEcCC-ccEEEEEEEecCchhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999888 576677766443 344444443322 34568889999998 789
Q ss_pred hhcceeeeeEEEEeCCCCccCCCCCcccHHHHHHHHHc
Q psy14338 629 DSIHQVGLYCLALVPPNYLPKTPLGGIHLSECKRRFLE 666 (1761)
Q Consensus 629 ~~P~~i~~~~v~~v~~~~lP~t~~GKidR~~L~~~~~~ 666 (1761)
|+|..+ .+++.++||+|+|||+||++|++.+.+
T Consensus 531 ~~p~~i-----~~v~~~~lP~t~~GKi~r~~l~~~~~~ 563 (576)
T 3gqw_A 531 GVTAAI-----DLLPPHSIPRTSSGKPARAEAKKRYQK 563 (576)
T ss_dssp SCCEEE-----EEECSSCSCBCTTSSBCHHHHHHHHHH
T ss_pred CCceeE-----EEECCCCcCcCCCccchHHHHHHHHHH
Confidence 999986 467667999999999999999998864
No 52
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.2e-68 Score=690.83 Aligned_cols=494 Identities=16% Similarity=0.193 Sum_probs=396.9
Q ss_pred ccccccccCCCCcCCCCCCCceEEccCCCCceeeCHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCHHHHHHHHHHH
Q psy14338 1166 YLGFLRRTSPAGVAGAPVPPGVSSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCL 1245 (1761)
Q Consensus 1166 ~~~~~~~~~~~~a~~~P~~~Av~~~d~~~~~~~lTY~eL~~~a~~lA~~L~~~~Gv~~gd~V~i~~~~s~~~iva~lA~l 1245 (1761)
.+.|.+++. ++||++|++ +.++++||+||+++++++|++|.+. |+++||+|+++++|++++++++|||+
T Consensus 4 ~~~l~~~a~-----~~p~~~A~~-----~~~~~~Ty~el~~~~~~lA~~L~~~-g~~~gd~V~i~~~n~~e~~~~~la~~ 72 (512)
T 3fce_A 4 LEQIEKWAA-----ETPDQTAFV-----WRDAKITYKQLKEDSDALAHWISSE-YPDDRSPIMVYGHMQPEMIINFLGCV 72 (512)
T ss_dssp HHHHHHHHH-----HSTTSEEEE-----ETTEEEEHHHHHHHHHHHHHHHHHH-STTCCCCEEEEESSCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HCCCceEEE-----eCCceEEHHHHHHHHHHHHHHHHHh-CCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 344444443 779999999 6778999999999999999999999 99999999999999999999999999
Q ss_pred HcCCEEEeCCCCCCCCccCChHHHHHHHHhcCCeEEEechhHHHHHhhhccccccccccCCccccCCCCccchhhhccCC
Q psy14338 1246 YVGAVPVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDMPKKKLAALYRA 1325 (1761)
Q Consensus 1246 ~aG~~~vpldp~~P~~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1325 (1761)
++|+++||++|.+|.+ ++.+++++++++++|++...... .. ....+....+......... ........
T Consensus 73 ~~G~v~vpl~~~~~~~------~l~~il~~~~~~~~i~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 140 (512)
T 3fce_A 73 KAGHAYIPVDLSIPAD------RVQRIAENSGAKLLLSATAVTVT--DL-PVRIVSEDNLKDIFFTHKG---NTPNPEHA 140 (512)
T ss_dssp HTTCCEEEEETTSCHH------HHHHHHHHSCCCEEEESSCCCSS--CC-SSEEEETHHHHHHHHHTTT---CCCCGGGS
T ss_pred HhCCEEEeeCCCCcHH------HHHHHHHhcCCCEEEecCccccc--cc-ccceechhhhhhhcccccc---cCCCcccc
Confidence 9999999999988777 99999999999999987532100 00 0000000000000000000 00111234
Q ss_pred CCCCCEEEEEeccCCCCCCceEEccHHHHHHHHHHHHHHcCcCCCCeEEEEeCCccChhHHHHHHHHhhcCceEEEeCCC
Q psy14338 1326 PTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPS 1405 (1761)
Q Consensus 1326 ~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~L~~G~~~vl~~~~ 1405 (1761)
..+++++||+|||||||.||||+++|+++.+.+.+....+++.++|+++.++|++|+.++ ..++.+++.|+++++.+.
T Consensus 141 ~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~- 218 (512)
T 3fce_A 141 VKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSV-MDIYPSLVTGGTLWAIDK- 218 (512)
T ss_dssp CCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGH-HHHHHHHHTTCEEEECCH-
T ss_pred CCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHH-HHHHHHHhCCCEEEECCH-
Confidence 578999999999999999999999999999999999999999999999999999988887 678999999999999875
Q ss_pred ccccCHHHHHHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCCCCCcceEEEeecCCCChHHHHHHHHHHHhhCCC
Q psy14338 1406 EVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALGL 1485 (1761)
Q Consensus 1406 ~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~~l~~Lr~v~~gGe~l~~~~l~~~~~~~~~~~g~ 1485 (1761)
...+++..+++.|+++++|+++++|+++..++.. ......++++||.+++|||++++ .+.+++.+.|+.
T Consensus 219 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-------~~~~~~~~~~lr~~~~~G~~l~~-~~~~~~~~~~~~--- 287 (512)
T 3fce_A 219 DMIARPKDLFASLEQSDIQVWTSTPSFAEMCLME-------ASFSESMLPNMKTFLFCGEVLPN-EVARKLIERFPK--- 287 (512)
T ss_dssp HHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTS-------TTCSTTTSTTCCEEEECSSCCCH-HHHHHHHHHCTT---
T ss_pred HHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhh-------ccccchhCccccEEEEecCcCCH-HHHHHHHHHCCC---
Confidence 2247899999999999999999999999998653 22345678999999999999999 888888887743
Q ss_pred CCccccccccccccceeeecCCCCCCCceeEecccccccCcceecccCCCCccceeccccccCCcEEEEEcCCCCCCCCC
Q psy14338 1486 SPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLPGVKVIIANPETKGQCGD 1565 (1761)
Q Consensus 1486 ~e~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~~~p~ 1565 (1761)
..+++.||+||++.+++.... ..... ......++|+|+++++++|+|++ ++++|.
T Consensus 288 --~~i~~~YG~TE~~~~~~~~~~---------~~~~~-------------~~~~~~~~G~~~~~~~~~i~d~~-g~~~~~ 342 (512)
T 3fce_A 288 --ATIMNTYGPTEATVAVTGIHV---------TEEVL-------------DQYKSLPVGYCKSDCRLLIMKED-GTIAPD 342 (512)
T ss_dssp --CEEEEEECCGGGSSCSEEEEC---------CHHHH-------------HHCSSCCCEEECTTCEEEEECSS-SCBCCT
T ss_pred --CEEEeCcccChhhhheeeEEe---------ccccc-------------cccCCCccccccCCcEEEEECCC-CCCCCC
Confidence 689999999998764432110 00000 00123469999999999999954 899999
Q ss_pred CcceEEEEcCCcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEeccCCCCCCCCCCCCCCCcccceEEEE
Q psy14338 1566 SHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDAVFVV 1645 (1761)
Q Consensus 1566 G~~GEL~i~g~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~~~~~d~d~~~~~~g~G~~~~~l~~~ 1645 (1761)
|++|||+|+||+++.|||| +|++|++.|... +++|||||||+|++ +| |+ |+|+
T Consensus 343 g~~GEl~v~g~~v~~GY~~---~~~~t~~~f~~~-----~~~~~~~TGDlg~~-------~d--------G~----l~i~ 395 (512)
T 3fce_A 343 GEKGEIVIVGPSVSVGYLG---SPELTEKAFTMI-----DGERAYKTGDAGYV-------EN--------GL----LFYN 395 (512)
T ss_dssp TSCEEEEEESTTSCSCBTT---CHHHHHHHEEEE-----TTEEEEEEEEEEEE-------ET--------TE----EEEE
T ss_pred CCeEEEEEeccccChhhcC---CchhhhhccccC-----CCCEEEeCCceEEe-------cC--------CE----EEEe
Confidence 9999999999999999999 999999999531 46799999999998 47 99 9999
Q ss_pred cccCCeEEeCCeecChHHHHHHHHHhccCcceeEEEee-----CCeEEEEEEeCCCch-----hHhhHHHHHHHHHhhhc
Q psy14338 1646 GALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELDGNES-----EALDLVPLVTNAVLEEH 1715 (1761)
Q Consensus 1646 GR~dd~Iki~G~rI~~~eIE~~~l~~~p~V~~a~Vv~~-----~~~~~a~v~~~~~~~-----~~~~l~~~l~~~~Lp~~ 1715 (1761)
||+||+||++|+||+|.|||+ +|.+||+|.+|+|++. ++.++++|+...... ..++++++|+++ || .
T Consensus 396 GR~~d~ik~~G~~v~p~eIE~-~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~-L~-~ 472 (512)
T 3fce_A 396 GRLDFQIKLHGYRMELEEIEH-HLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNER-LP-N 472 (512)
T ss_dssp EEGGGCEEETTEEECHHHHHH-HHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHTT-SC-G
T ss_pred cccCCEEEECCEEECHHHHHH-HHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchhhhHHHHHHHHHhh-Cc-h
Confidence 999999999999999999999 8999999999999964 346888888754321 235789999986 88 9
Q ss_pred CceeeEEEEECCCCccCCCchhhhHHHHHHHHHcCCC
Q psy14338 1716 HLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQL 1752 (1761)
Q Consensus 1716 ~~vP~~i~~v~~~~lP~t~~GKvdR~~L~~~~~~~~~ 1752 (1761)
||+|+.|++++ +||+|+||||||++|++.+.+...
T Consensus 473 ~~~P~~~~~~~--~lP~t~~GKi~R~~L~~~~~~~~~ 507 (512)
T 3fce_A 473 YMIPRKFMYQS--SIPMTPNGKVDRKKLLSEVTALEH 507 (512)
T ss_dssp GGSCSEEEECS--CCCBCTTSSBCHHHHHHHHHC---
T ss_pred hcCCeEEEEec--ccCCCCCcChHHHHHHhhhhhccc
Confidence 99999999999 999999999999999999977654
No 53
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=5.2e-68 Score=681.61 Aligned_cols=472 Identities=19% Similarity=0.183 Sum_probs=373.2
Q ss_pred ccccccccccccCCCCcCCCCC-CCceEEccCCCCceeeCHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCHHHHHH
Q psy14338 1162 ARTGYLGFLRRTSPAGVAGAPV-PPGVSSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICA 1240 (1761)
Q Consensus 1162 ~~~~~~~~~~~~~~~~a~~~P~-~~Av~~~d~~~~~~~lTY~eL~~~a~~lA~~L~~~~Gv~~gd~V~i~~~~s~~~iva 1240 (1761)
..++.+.+.+++. ++|+ ++|++ ++++++||+||+++++++|+.|. .|++|+|+++|+++++++
T Consensus 21 ~~tl~~~l~~~a~-----~~p~d~~Al~-----~~~~~~Ty~eL~~~~~~~A~~L~------~~~~V~i~~~~~~~~~~~ 84 (505)
T 3nyq_A 21 MSSLFPALSPAPT-----GAPADRPALR-----FGERSLTYAELAAAAGATAGRIG------GAGRVAVWATPAMETGVA 84 (505)
T ss_dssp ---CCTTTSSCCC-----SGGGGSEEEE-----ETTEEEEHHHHHHHHHHHHTTCC---------CEEEECCSSHHHHHH
T ss_pred cchhHHHHHHHHH-----hCCCCCeEEE-----ECCeeeeHHHHHHHHHHHHhhcc------CCCEEEEEcCCCHHHHHH
Confidence 3466677766654 5576 99999 67899999999999999998663 488999999999999999
Q ss_pred HHHHHHcCCEEEeCCCCCCCCccCChHHHHHHHHhcCCeEEEechhHHHHHhhhccccccccccCCccccCCCCccchhh
Q psy14338 1241 FYGCLYVGAVPVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDMPKKKLA 1320 (1761)
Q Consensus 1241 ~lA~l~aG~~~vpldp~~P~~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 (1761)
+|||+|+|+++|||||.+|.+ ++.+++++++++++|++...... ........+. . .... ...
T Consensus 85 ~la~~~~Ga~~vpl~~~~~~~------~l~~il~~~~~~~vi~~~~~~~~-~~~~~~~~~~---~----~~~~----~~~ 146 (505)
T 3nyq_A 85 VVAALLAGVAAVPLNPKSGDK------ELAHILSDSAPSLVLAPPDAELP-PALGALERVD---V----DVRA----RGA 146 (505)
T ss_dssp HHHHHHHTCCEEEECTTCCHH------HHHHHHHHHCCSEEEECTTCCCC-GGGTTSEEEE---C----CTTC----CCC
T ss_pred HHHHHHhCCEEEEcCCCCCHH------HHHHHHHHCCCCEEEECCccccc-hhhccccccc---c----cccc----ccC
Confidence 999999999999999988887 99999999999999998652100 0000000000 0 0000 001
Q ss_pred hccCCCCCCCEEEEEeccCCCCCCceEEccHHHHHHHHHHHHHHcCcCCCCeEEEEeCCccChhHHHHHHHHhhcCceEE
Q psy14338 1321 ALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSI 1400 (1761)
Q Consensus 1321 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~L~~G~~~v 1400 (1761)
.......++++|||+|||||||+||||+++|+++.+.+.+....+++.++|+++..+|++|.++++..++.+|+.|++++
T Consensus 147 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~ 226 (505)
T 3nyq_A 147 VPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVR 226 (505)
T ss_dssp CCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEE
T ss_pred CCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEE
Confidence 11234578999999999999999999999999999999999999999999999999999999888778999999999999
Q ss_pred EeCCCccccCHHHHHHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCCCCCcceEEEeecCCCChHHHHHHHHHHH
Q psy14338 1401 LIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLF 1480 (1761)
Q Consensus 1401 l~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~~l~~Lr~v~~gGe~l~~~~l~~~~~~~~ 1480 (1761)
+.+. +++..+++.+ ++++|+++++|+++..+++.+... ......++++|.+++||+++++ .+.+++.+.+
T Consensus 227 ~~~~----~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~----~~~~~~l~~lr~i~~gg~~l~~-~~~~~~~~~~ 296 (505)
T 3nyq_A 227 HLGR----FSTEGAAREL-NDGATMLFGVPTMYHRIAETLPAD----PELAKALAGARLLVSGSAALPV-HDHERIAAAT 296 (505)
T ss_dssp ECSS----CCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGC----HHHHHHHHHCSEEEECSSCCCH-HHHHHHHHHH
T ss_pred ECCC----CChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcC----chhhcccccceEEEECCCCCCH-HHHHHHHHhc
Confidence 9874 7899999999 889999999999999998743211 1122346789999999999999 7888888776
Q ss_pred hhCCCCCccccccccccccceeeecCCCCCCCceeEecccccccCcceecccCCCCccceeccccccCCcEEEEEcCCCC
Q psy14338 1481 SALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLPGVKVIIANPETK 1560 (1761)
Q Consensus 1481 ~~~g~~e~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~ 1560 (1761)
+ ..++|.||+||+++.+...... .....++|+|++|++++|+|++ +
T Consensus 297 ~------~~~~~~YG~TE~~~~~~~~~~~---------------------------~~~~~~vG~p~~~~~~~i~d~~-g 342 (505)
T 3nyq_A 297 G------RRVIERYGMTETLMNTSVRADG---------------------------EPRAGTVGVPLPGVELRLVEED-G 342 (505)
T ss_dssp S------CCCEEEEEETTTEEEEECCTTS---------------------------CCCTTCCCEECTTCEEEEC-----
T ss_pred C------CeeecccchhhcccccccCCCC---------------------------CCCCCCcccCCCCCEEEEECCC-C
Confidence 3 5899999999987655432110 0112459999999999999966 7
Q ss_pred CCCCC---CcceEEEEcCCcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEeccCCCCCCCCCCCCCCCc
Q psy14338 1561 GQCGD---SHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSK 1637 (1761)
Q Consensus 1561 ~~~p~---G~~GEL~i~g~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~~~~~d~d~~~~~~g~G~ 1637 (1761)
++++. |++|||+|+|+++++|||| +|+.|+++| ..+|||||||+|++ |+| |+
T Consensus 343 ~~~~~~~~g~~GEl~v~g~~v~~GY~~---~~~~t~~~f--------~~~g~y~TGDl~~~------~~d--------G~ 397 (505)
T 3nyq_A 343 TPIAALDGESVGEIQVRGPNLFTEYLN---RPDATAAAF--------TEDGFFRTGDMAVR------DPD--------GY 397 (505)
T ss_dssp -CCCCCCSCCCEEEEEESTTSCCEETT---CHHHHHHTB--------CTTSCEEEEEEEEE------CTT--------SC
T ss_pred CCcccCCCCceEEEEEecCchhhhhCC---ChhHhhhhh--------cCCCCCccCCeEEE------CCC--------cc
Confidence 88876 9999999999999999999 999999999 35789999999999 999 99
Q ss_pred ccceEEEEccc-CCeEEeCCeecChHHHHHHHHHhccCcceeEEEee-----CCeEEEEEEeCC--CchhHhhHHHHHHH
Q psy14338 1638 LHDAVFVVGAL-DETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELDG--NESEALDLVPLVTN 1709 (1761)
Q Consensus 1638 ~~~~l~~~GR~-dd~Iki~G~rI~~~eIE~~~l~~~p~V~~a~Vv~~-----~~~~~a~v~~~~--~~~~~~~l~~~l~~ 1709 (1761)
|+|+||+ |||||++|+||+|.|||+ +|.+||+|.+|+|++. ++.++++|+... ...+.++|+++|++
T Consensus 398 ----l~~~GR~~d~~ik~~G~~v~~~eIE~-~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~~l~~~l~~ 472 (505)
T 3nyq_A 398 ----VRIVGRKATDLIKSGGYKIGAGEIEN-ALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAA 472 (505)
T ss_dssp ----EEEEEESSCCCEEETTEEECHHHHHH-HHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCCCHHHHHHHHHH
T ss_pred ----EEEeCCccCceEEeCCEEECHHHHHH-HHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCCCHHHHHHHHHh
Confidence 9999998 699999999999999999 8999999999999974 347889988753 34567899999999
Q ss_pred HHhhhcCceeeEEEEECCCCccCCCchhhhHHHHHH
Q psy14338 1710 AVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRD 1745 (1761)
Q Consensus 1710 ~~Lp~~~~vP~~i~~v~~~~lP~t~~GKvdR~~L~~ 1745 (1761)
+ || .||+|+.|++++ +||+|+||||||++|++
T Consensus 473 ~-L~-~~~~P~~i~~v~--~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 473 R-LA-PHKRPRVVRYLD--AVPRNDMGKIMKRALNR 504 (505)
T ss_dssp H-TC-GGGSCSEEEECS--CCCC-------------
T ss_pred h-CC-CCcCccEEEEEC--CCCCCCCcCeeHHhhcc
Confidence 7 98 999999999999 99999999999999986
No 54
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=8.8e-68 Score=699.08 Aligned_cols=500 Identities=15% Similarity=0.180 Sum_probs=396.9
Q ss_pred CCCCCCCceEEccC-CCCceeeCHHHHHHHHHHHHHHHH-hhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeCCC
Q psy14338 1179 AGAPVPPGVSSVDT-RSAAQLLTCSQLHKRAERVGALLL-ERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 1256 (1761)
Q Consensus 1179 ~~~P~~~Av~~~d~-~~~~~~lTY~eL~~~a~~lA~~L~-~~~Gv~~gd~V~i~~~~s~~~iva~lA~l~aG~~~vpldp 1256 (1761)
+++||++|+++.+. ...++++||+||+++++++|+.|+ +. |+++||+|+|+++|++++++++|||+++|++++|++|
T Consensus 93 ~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~-Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~ 171 (663)
T 1ry2_A 93 LKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSM-GVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFA 171 (663)
T ss_dssp TTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTS-CCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCT
T ss_pred ccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCC
Confidence 36799999996533 235689999999999999999999 88 9999999999999999999999999999999999999
Q ss_pred CCCCCccCChHHHHHHHHhcCCeEEEechhHH---------HHHhhhcc-----ccccccccCC--cc-c-cCCCCc---
Q psy14338 1257 PHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVI---------KLLKSKEA-----SNVVDIKSWP--TI-L-DTDDMP--- 1315 (1761)
Q Consensus 1257 ~~P~~~~~~~~rl~~il~~~~~~~vl~~~~~~---------~~~~~~~~-----~~~~~~~~~~--~~-~-~~~~~~--- 1315 (1761)
.+|.+ ++.+++++++++++|+++... ..+..... ..++...... .. . ......
T Consensus 172 ~~~~~------~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~ 245 (663)
T 1ry2_A 172 GFSSN------SLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWAT 245 (663)
T ss_dssp TSCHH------HHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEEHHH
T ss_pred CCCHH------HHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccccCCCccccHHH
Confidence 87777 999999999999999986531 11111110 0011000000 00 0 000000
Q ss_pred ---cchhhhccCCCCCCCEEEEEeccCCCCCCceEEccHHHHHHHHH-HHHHHcCcCCCCeEEEEeCCccChhHHHHHHH
Q psy14338 1316 ---KKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCR-SMKLACELYPSRHIALCLDPYCGLGFALWVLS 1391 (1761)
Q Consensus 1316 ---~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 1391 (1761)
............+++++||+|||||||+||||+++|++++..+. .....+++.++|+++..++++|..+..+.++.
T Consensus 246 ~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~ 325 (663)
T 1ry2_A 246 EKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYG 325 (663)
T ss_dssp HHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHH
T ss_pred HHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHH
Confidence 00000112334678999999999999999999999999887664 45667899999999999999998888777899
Q ss_pred HhhcCceEEEeCCCccccCHHHHHHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCCCCCcceEEEeecCCCChHH
Q psy14338 1392 SVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIH 1471 (1761)
Q Consensus 1392 ~L~~G~~~vl~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~~l~~Lr~v~~gGe~l~~~~ 1471 (1761)
+|++|+++++.+.....+++..+++.|++++||+++++|++++.|.+... ......++++||.+++|||++++ +
T Consensus 326 ~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~-----~~~~~~~l~sLr~i~~gGe~l~~-~ 399 (663)
T 1ry2_A 326 PLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD-----SYIENHSLKSLRCLGSVGEPIAA-E 399 (663)
T ss_dssp HHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCT-----TSSSSCCCTTCCEEEECSSCCCH-H
T ss_pred HHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCc-----cccccCCcCceEEEEEEcCCCCH-H
Confidence 99999999999754334689999999999999999999999999976321 11235678999999999999999 7
Q ss_pred HHHHHHHHHhhCCCCCccccccccccccceeeecCCCCCCCceeEecccccccCcceecccCCCCccceeccccccCCcE
Q psy14338 1472 LTSAFSKLFSALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLPGVK 1551 (1761)
Q Consensus 1472 l~~~~~~~~~~~g~~e~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~ 1551 (1761)
+.+++.+.+ |..++.+++.||+||++..++...... ....+.+++|+|++|++
T Consensus 400 ~~~~~~~~~---g~~~~~i~~~YG~TE~~~~~~~~~~~~------------------------~~~~~~gs~G~p~~g~~ 452 (663)
T 1ry2_A 400 VWEWYSEKI---GKNEIPIVDTYWQTESGSHLVTPLAGG------------------------VTPMKPGSASFPFFGID 452 (663)
T ss_dssp HHHHHHHTT---SCSSSCEEECBCCTTTCSCSEECCTTT------------------------CCCCCTTCCCEECTTCC
T ss_pred HHHHHHHHh---CCCCceEEEeECCccccCeeeccCCCC------------------------CcccCCCccccCcCCCe
Confidence 777776654 545578999999999875443321100 00012346999999999
Q ss_pred EEEEcCCCCCCCCC-CcceEEEEcC--CcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEeccCCCCCCC
Q psy14338 1552 VIIANPETKGQCGD-SHLGEIWVQS--PHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVAG 1628 (1761)
Q Consensus 1552 ~~v~d~~~~~~~p~-G~~GEL~i~g--~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~~~~~d~d~ 1628 (1761)
++|+|+++++++|. |+.|||+|+| |++++|||| +|+.|.+.|.. ..+|||+|||+|++ |+|
T Consensus 453 v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~---~~~~~~~~~~~------~~~g~y~TGDlg~~------d~d- 516 (663)
T 1ry2_A 453 AVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWK---NHDRYLDTYLN------PYPGYYFTGDGAAK------DKD- 516 (663)
T ss_dssp EEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETT---CHHHHHHHHTS------SSTTSEEEEEEEEE------CTT-
T ss_pred EEEEcCCCCCcCCCCCcceEEEEecCCCchhccccc---ChHHHHHhhhc------CCCCEEEcCCEEEE------cCC-
Confidence 99999746899998 9999999999 589999999 99999998842 23689999999999 999
Q ss_pred CCCCCCCCcccceEEEEcccCCeEEeCCeecChHHHHHHHHHhccCcceeEEEee-----CCeEEEEEEeCCCc------
Q psy14338 1629 APVPPGVSKLHDAVFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELDGNE------ 1697 (1761)
Q Consensus 1629 ~~~~~g~G~~~~~l~~~GR~dd~Iki~G~rI~~~eIE~~~l~~~p~V~~a~Vv~~-----~~~~~a~v~~~~~~------ 1697 (1761)
|+ |+|+||+|||||++|+||+|.|||+ +|.+||+|.+|+|++. ++.+++||++....
T Consensus 517 -------G~----l~i~GR~dd~Ik~~G~rI~~~eIE~-~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~ 584 (663)
T 1ry2_A 517 -------GY----IWILGRVDDVVNVSGHRLSTAEIEA-AIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTAT 584 (663)
T ss_dssp -------CC----EEECSCTTSCBCSSSCCBCHHHHHH-HHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC---------
T ss_pred -------CC----EEEEeecCCEEEECCEEcCHHHHHH-HHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCcccccc
Confidence 99 9999999999999999999999999 8999999999999984 45788998875321
Q ss_pred -----hhHhhHHHHHHHHHhhhcCceeeEEEEECCCCccCCCchhhhHHHHHHHHHcC
Q psy14338 1698 -----SEALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 1750 (1761)
Q Consensus 1698 -----~~~~~l~~~l~~~~Lp~~~~vP~~i~~v~~~~lP~t~~GKvdR~~L~~~~~~~ 1750 (1761)
...++|+++|+++ |+ .||+|+.|++++ +||+|+||||+|++|++.+.+.
T Consensus 585 ~~~~~~l~~~l~~~l~~~-L~-~~~~P~~i~~v~--~lP~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 585 DDELQDIKKHLVFTVRKD-IG-PFAAPKLIILVD--DLPKTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp ---CCSHHHHHHHHHHHH-TC-TTTSCSEEEECS--CCCBCTTSCBCHHHHHHSCC--
T ss_pred chhHHHHHHHHHHHHHHh-CC-CCcCCeEEEEcC--CCCCCCccCchHHHHHHHHcCC
Confidence 1257899999987 88 999999999999 9999999999999999987543
No 55
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=2.4e-68 Score=690.11 Aligned_cols=495 Identities=13% Similarity=0.140 Sum_probs=388.6
Q ss_pred ccccccccccCCCCcCCCCCCCceEEccCCCCceeeCHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCHHHHHHHHH
Q psy14338 1164 TGYLGFLRRTSPAGVAGAPVPPGVSSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYG 1243 (1761)
Q Consensus 1164 ~~~~~~~~~~~~~~a~~~P~~~Av~~~d~~~~~~~lTY~eL~~~a~~lA~~L~~~~Gv~~gd~V~i~~~~s~~~iva~lA 1243 (1761)
++.+.|.+++. ++|+++|+. +.++++||+||+++++++|++|.+. |+++||+|+|+++|++++++++||
T Consensus 5 ~l~~~l~~~a~-----~~p~~~a~~-----~~~~~~Ty~el~~~~~~lA~~L~~~-g~~~gd~V~i~~~n~~~~~~~~lA 73 (521)
T 3l8c_A 5 DMIDSIEQFAQ-----TQADFPVYD-----CLGERRTYGQLKRDSDSIAAFIDSL-ALLAKSPVLVFGAQTYDMLATFVA 73 (521)
T ss_dssp CHHHHHHHHHH-----HSTTSEEEE-----ETTEEEEHHHHHHHHHHHHHHHHHT-CCCTTCCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HCCCCccee-----cCCCeecHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCCHHHHHHHHH
Confidence 34455555554 679999999 6788999999999999999999999 999999999999999999999999
Q ss_pred HHHcCCEEEeCCCCCCCCccCChHHHHHHHHhcCCeEEEechhHHHHHhhhccccccccccCCccccCCCCccchhhhcc
Q psy14338 1244 CLYVGAVPVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDMPKKKLAALY 1323 (1761)
Q Consensus 1244 ~l~aG~~~vpldp~~P~~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1323 (1761)
|+++|+++|||+|.+|.+ ++.+++++++++++|++.+....+.... .+....+..... .. ......
T Consensus 74 ~~~~G~v~vpl~~~~~~~------~l~~il~~~~~~~ii~~~~~~~~~~~~~---~~~~~~~~~~~~-~~----~~~~~~ 139 (521)
T 3l8c_A 74 LTKSGHAYIPVDVHSAPE------RILAIIEIAKPSLIIAIEEFPLTIEGIS---LVSLSEIESAKL-AE----MPYERT 139 (521)
T ss_dssp HHHTTCCEEEEETTSCHH------HHHHHHHHSCCSEEEESSCCCSCCTTSE---EEEHHHHHHHHH-HT----CCCCCS
T ss_pred HHHhCCEEEecCccccHH------HHHHHHHhCCCCEEEecCccccccccCc---ccchhhhhhccc-cc----CCcccC
Confidence 999999999999987777 9999999999999999875422111100 000000000000 00 000112
Q ss_pred CCCCCCCEEEEEeccCCCCCCceEEccHHHHHHHHHHHHHH--cCcCCCCeEEEEeCCccChhHHHHHHHHhhcCceEEE
Q psy14338 1324 RAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLA--CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSIL 1401 (1761)
Q Consensus 1324 ~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~L~~G~~~vl 1401 (1761)
....+++++||+|||||||.||||+++|+++.+.+.+.... +++.++++++...+++|+.+. ..++.+++.|+++++
T Consensus 140 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~~~~ 218 (521)
T 3l8c_A 140 HSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSV-MYWAPTLALGGTLFA 218 (521)
T ss_dssp SCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGH-HHHHHHHHTTCEEEE
T ss_pred CCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHH-HHHHHHHhcCCEEEE
Confidence 34578999999999999999999999999999988887766 677788887777777777665 678889999999999
Q ss_pred eCCCccccCHHHHHHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCCCCCcceEEEeecCCCChHHHHHHHHHHHh
Q psy14338 1402 IPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFS 1481 (1761)
Q Consensus 1402 ~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~~l~~Lr~v~~gGe~l~~~~l~~~~~~~~~ 1481 (1761)
.+.. ...++..+++.|.++++|++.++|+++..+... ......++++||.+++||+++++ .+.+++.+.++
T Consensus 219 ~~~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-------~~~~~~~~~~lr~~~~gG~~l~~-~~~~~~~~~~~ 289 (521)
T 3l8c_A 219 LPKE-LVADFKQLFTTIAQLPVGIWTSTPSFADMAMLS-------DDFCQAKMPALTHFYFDGEELTV-STARKLFERFP 289 (521)
T ss_dssp CCGG-GTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTS-------TTCSTTTCTTCCEEEECSSCCCH-HHHHHHHHHCT
T ss_pred cCHH-HhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhh-------hccccccCccceEEEEecccCCH-HHHHHHHHHCC
Confidence 8752 245899999999999999999999999988653 12345678899999999999999 78788877764
Q ss_pred hCCCCCccccccccccccceeeecCCCCCCCceeEecccccccCcceecccCCCCccceeccccccCCcEEEEEcCCCCC
Q psy14338 1482 ALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLPGVKVIIANPETKG 1561 (1761)
Q Consensus 1482 ~~g~~e~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~ 1561 (1761)
. ..+++.||+||++.+++... ...... ......++|+|++|++++|+|++ ++
T Consensus 290 ~-----~~i~~~YG~TE~~~~~~~~~---------~~~~~~-------------~~~~~~~vG~p~~~~~~~i~d~~-g~ 341 (521)
T 3l8c_A 290 S-----AKIINAYGPTEATVALSAIE---------ITREMV-------------DNYTRLPIGYPKPDSPTYIIDED-GK 341 (521)
T ss_dssp T-----CEEEEEECCGGGSSCSEEEE---------ECHHHH-------------HHCSSCEEEEECTTSCEEEECTT-SC
T ss_pred C-----ceEEeCcCccHHhhhhceee---------cccccc-------------cCCCccccccccCCCEEEEECCC-cC
Confidence 3 68999999999865432110 000000 00123469999999999999965 89
Q ss_pred CCCCCcceEEEEcCCcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEeccCCCCCCCCCCCCCCCcccce
Q psy14338 1562 QCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDA 1641 (1761)
Q Consensus 1562 ~~p~G~~GEL~i~g~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~~~~~d~d~~~~~~g~G~~~~~ 1641 (1761)
++|.|++|||+|+||++++|||| +|+.|+++|... +++|||+|||+|++ |+| |+
T Consensus 342 ~~~~g~~GEl~v~g~~v~~GY~~---~~~~t~~~f~~~-----~~~~~~~TGDlg~~------d~d--------G~---- 395 (521)
T 3l8c_A 342 ELSSGEQGEIIVTGPAVSKGYLN---NPEKTAEAFFTF-----KGQPAYHTGDIGSL------TED--------NI---- 395 (521)
T ss_dssp BCCTTCCEEEEEESTTSCSCBTT---CHHHHHHHEEEE-----TTEEEEEEEEEEEE------CSS--------SC----
T ss_pred CCCCCCceEEEecccccChhhcC---CchHhhccCcCC-----CCceeeeCCCEEEE------eCC--------Ce----
Confidence 99999999999999999999999 999999999642 46799999999999 999 99
Q ss_pred EEEEcccCCeEEeCCeecChHHHHHHHHHhccCcceeEEEee------CCeEEEEEEeCCCch--------hHhhHHHHH
Q psy14338 1642 VFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW------TNLLVVVVELDGNES--------EALDLVPLV 1707 (1761)
Q Consensus 1642 l~~~GR~dd~Iki~G~rI~~~eIE~~~l~~~p~V~~a~Vv~~------~~~~~a~v~~~~~~~--------~~~~l~~~l 1707 (1761)
++|+||+||+||++|+||+|.|||+ +|.+||+|.+|+|++. ++.++++|+...... ..++|+++|
T Consensus 396 l~~~GR~~d~i~~~G~~v~p~eIE~-~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l 474 (521)
T 3l8c_A 396 LLYGGRLDFQIKYAGYRIELEDVSQ-QLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASV 474 (521)
T ss_dssp EEEEEEGGGBCC-----CBHHHHHH-HHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHS
T ss_pred EEEeCcccceEeECCEEeCHHHHHH-HHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccccccchhhHHHHHHHH
Confidence 9999999999999999999999999 8999999999999963 246788888754321 256789999
Q ss_pred HHHHhhhcCceeeEEEEECCCCccCCCchhhhHHHHHHHHHcCCC
Q psy14338 1708 TNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQL 1752 (1761)
Q Consensus 1708 ~~~~Lp~~~~vP~~i~~v~~~~lP~t~~GKvdR~~L~~~~~~~~~ 1752 (1761)
+++ || .||+|..|++++ +||+|+||||||++|++.+.+...
T Consensus 475 ~~~-l~-~~~~P~~i~~v~--~lP~t~~GKidr~~L~~~~~~~~~ 515 (521)
T 3l8c_A 475 KDH-MM-SYMMPSKFLYRD--SLPLTPNGKIDIKTLINEVNNREG 515 (521)
T ss_dssp GGG-SC-GGGSCSEEEECS--SCCBCTTSSBCHHHHHHHTC----
T ss_pred Hhh-Cc-cccCCeEEEEec--ccCCCCCcCccHHHHhhhhhcCCc
Confidence 886 88 999999999999 999999999999999999865543
No 56
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=5.6e-68 Score=735.59 Aligned_cols=498 Identities=16% Similarity=0.239 Sum_probs=330.3
Q ss_pred ccccccccccccCCCCcCCCCCCCceEEccCCCCceeeCHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCHHHHHHH
Q psy14338 1162 ARTGYLGFLRRTSPAGVAGAPVPPGVSSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAF 1241 (1761)
Q Consensus 1162 ~~~~~~~~~~~~~~~~a~~~P~~~Av~~~d~~~~~~~lTY~eL~~~a~~lA~~L~~~~Gv~~gd~V~i~~~~s~~~iva~ 1241 (1761)
..++++.|.+++. ++||++|+++.+ .++++||+||+++++++|++|++. |+++||+|+|+++|++++++++
T Consensus 60 ~~tl~~~l~~~a~-----~~pd~~Al~~~~---~~~~~TY~eL~~~~~~lA~~L~~~-Gv~~gd~V~i~~~ns~e~~v~~ 130 (979)
T 3tsy_A 60 HLSLHDYIFQNIS-----EFATKPCLINGP---TGHVYTYSDVHVISRQIAANFHKL-GVNQNDVVMLLLPNCPEFVLSF 130 (979)
T ss_dssp TSCHHHHHTTTGG-----GTTTSEEEEETT---TCCEEEHHHHHHHHHHHHHHHHHT-TCCTTCEEEEECSSCHHHHHHH
T ss_pred CCCHHHHHHHHHH-----hCCCCeEEEECC---CCcEEEHHHHHHHHHHHHHHHHHc-CCCCcCEEEEEeCCCHHHHHHH
Confidence 3578888888775 779999998421 258999999999999999999999 9999999999999999999999
Q ss_pred HHHHHcCCEEEeCCCCCCCCccCChHHHHHHHHhcCCeEEEechhHHHHHhhhcc---cccccccc------------CC
Q psy14338 1242 YGCLYVGAVPVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEA---SNVVDIKS------------WP 1306 (1761)
Q Consensus 1242 lA~l~aG~~~vpldp~~P~~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~---~~~~~~~~------------~~ 1306 (1761)
|||+|+|+++|||||.+|.+ ++.+++++++++++|++......+..... ..++.... +.
T Consensus 131 lA~~~~Ga~~vpl~~~~~~~------~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (979)
T 3tsy_A 131 LAASFRGATATAANPFFTPA------EIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFT 204 (979)
T ss_dssp HHHHHHTCEEEEECTTSCHH------HHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCTTSCCCTTEEEGG
T ss_pred HHHHHcCCEEEeeCCCCCHH------HHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcccccCCcccccHH
Confidence 99999999999999988887 99999999999999999865443332211 11111100 11
Q ss_pred ccccCCCCccchhhhccCCCCCCCEEEEEeccCCCCCCceEEccHHHHHHHHHHHHH----HcCcCCCCeEEEEeCCccC
Q psy14338 1307 TILDTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKL----ACELYPSRHIALCLDPYCG 1382 (1761)
Q Consensus 1307 ~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~~~~~~~~~~ 1382 (1761)
.+.... .............++++|||+|||||||+||||+++|+++++.+..... .+++.++|+++..+|++|.
T Consensus 205 ~~~~~~--~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~ 282 (979)
T 3tsy_A 205 ELTQST--TEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHI 282 (979)
T ss_dssp GTSSCC--SGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSH
T ss_pred HHhhcc--ccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHH
Confidence 111100 0000112233567899999999999999999999999999998877654 4567888999999999999
Q ss_pred hhHHHHHHHHhhcCceEEEeCCCccccCHHHHHHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCCCCCcceEEEe
Q psy14338 1383 LGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVV 1462 (1761)
Q Consensus 1383 ~~~~~~~~~~L~~G~~~vl~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~~l~~Lr~v~~ 1462 (1761)
+++...++.+|..|+++++.+. +++..+++.|+++++|+++++|+++..+++.. .....++++||.+++
T Consensus 283 ~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------~~~~~~l~~lr~~~~ 351 (979)
T 3tsy_A 283 YALNSIMLCGLRVGAAILIMPK----FEINLLLELIQRCKVTVAPMVPPIVLAIAKSS-------ETEKYDLSSIRVVKS 351 (979)
T ss_dssp HHHHHTHHHHHHHTCEEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHHCG-------GGGTSCCTTCCEEEE
T ss_pred HHHHHHHHHHHhcCcEEEEeCC----CCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCc-------cccCCCccceEEEEE
Confidence 8887778899999999999884 78999999999999999999999999997642 335667899999999
Q ss_pred ecCCCChHHHHHHHHHHHhhCCCCCccccccccccccceeeecCCCCCCCceeEecccccccCcceecccCCCCccceec
Q psy14338 1463 VAEERPRIHLTSAFSKLFSALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLE 1542 (1761)
Q Consensus 1463 gGe~l~~~~l~~~~~~~~~~~g~~e~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1542 (1761)
|||++++ .+.++|.+.|+. ..++|.||+||++.++........ .+...+.++
T Consensus 352 gg~~l~~-~~~~~~~~~~~~-----~~l~~~YG~TE~~~~~~~~~~~~~----------------------~~~~~~~~~ 403 (979)
T 3tsy_A 352 GAAPLGK-ELEDAVNAKFPN-----AKLGQGYGMTEAGPVLAMSLGFAK----------------------EPFPVKSGA 403 (979)
T ss_dssp SSCCCCS-SHHHHHHHHCTT-----CEEEECEECGGGCSEEEECGGGSS----------------------SCCCCCTTC
T ss_pred cCCCCCH-HHHHHHHHHCCC-----CeEEeeechhhhhHHHHhCCCCCC----------------------CccccCCCC
Confidence 9999999 888888887743 689999999998765543221100 011122356
Q ss_pred cccccCCcEEEEEcCCCCCCCCCCcceEEEEcCCcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEeccC
Q psy14338 1543 SGKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTS 1622 (1761)
Q Consensus 1543 iG~p~~~~~~~v~d~~~~~~~p~G~~GEL~i~g~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~~~ 1622 (1761)
+|+|++|++++|+|+++++++|.|++|||+|+|+++++|||| +|++|+++| ..+|||||||+|++
T Consensus 404 ~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~---~p~~t~~~f--------~~~g~~~TGDl~~~---- 468 (979)
T 3tsy_A 404 CGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLN---NPAATAETI--------DKDGWLHTGDIGLI---- 468 (979)
T ss_dssp CCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSEETT---CHHHHHHHB--------CTTSCEEEEEEEEE----
T ss_pred cCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCCccccccC---Chhhhhhhc--------cCCCcEEcCCEEEE----
Confidence 999999999999998889999999999999999999999999 999999999 46789999999999
Q ss_pred CCCCCCCCCCCCCCcccceEEEEcccCCeEEeCCeecChHHHHHHHHHhccCcceeEEEee-----CCeEEEEEEeC-CC
Q psy14338 1623 PAGVAGAPVPPGVSKLHDAVFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELD-GN 1696 (1761)
Q Consensus 1623 ~~d~d~~~~~~g~G~~~~~l~~~GR~dd~Iki~G~rI~~~eIE~~~l~~~p~V~~a~Vv~~-----~~~~~a~v~~~-~~ 1696 (1761)
|+| |+ |+|+||+|||||++|+||+|.|||+ +|.+||+|.+|+|++. ++.++++|+.. +.
T Consensus 469 --~~d--------G~----l~~~GR~dd~ik~~G~~v~~~eIE~-~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~ 533 (979)
T 3tsy_A 469 --DDD--------DE----LFIVDRLKELIKYKGFQVAPAELEA-LLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDS 533 (979)
T ss_dssp --CTT--------SC----EEEEEESCC----------------------------------------------------
T ss_pred --cCC--------ce----EEEecCCCCEEEECCEEECHHHHHH-HHHhCCCcceEEEEEecccCCCcEEEEEEEECCCC
Confidence 999 99 9999999999999999999999999 8999999999999973 45778888763 44
Q ss_pred chhHhhHHHHHHHHHhhhcCceeeEEEEECCCCccCCCchhhhHHHHHHHHHc
Q psy14338 1697 ESEALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 1749 (1761)
Q Consensus 1697 ~~~~~~l~~~l~~~~Lp~~~~vP~~i~~v~~~~lP~t~~GKvdR~~L~~~~~~ 1749 (1761)
..+.++++++|+++ || .||+|..|++++ +||+|+||||||++|++.+.+
T Consensus 534 ~~~~~~l~~~l~~~-l~-~~~~p~~i~~v~--~lP~t~~GKi~r~~L~~~~~~ 582 (979)
T 3tsy_A 534 ELSEDDVKQFVSKQ-VV-FYKRINKVFFTE--SIPKAPSGKILRKDLRAKLAN 582 (979)
T ss_dssp -----------------------------------------------------
T ss_pred CCCHHHHHHHHHHh-cc-cccCCeEEEEeC--CcCcCCCCCeeHHHHHHHHHh
Confidence 56778999999997 88 999999999999 999999999999999998854
No 57
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=8.8e-67 Score=676.34 Aligned_cols=468 Identities=18% Similarity=0.235 Sum_probs=378.2
Q ss_pred CCCCCceEEccCCCCceeeCHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeCCCCCCC
Q psy14338 1181 APVPPGVSSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPHPQ 1260 (1761)
Q Consensus 1181 ~P~~~Av~~~d~~~~~~~lTY~eL~~~a~~lA~~L~~~~Gv~~gd~V~i~~~~s~~~iva~lA~l~aG~~~vpldp~~P~ 1260 (1761)
+|+++|++ +.++++||+||+++++++|++|++. |+++||+|+|+++|++++++++|||+++|+++||++|.+|.
T Consensus 36 ~p~~~A~~-----~~~~~~Ty~el~~~~~~lA~~L~~~-Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~ 109 (529)
T 2v7b_A 36 RAGKTAYI-----DDTGSTTYGELEERARRFASALRTL-GVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTP 109 (529)
T ss_dssp GTTSEEEE-----CSSCEEEHHHHHHHHHHHHHHHHHT-TCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEECCTTCCH
T ss_pred cCCceEEE-----eCCCCccHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEecCcccCH
Confidence 69999999 6678999999999999999999999 99999999999999999999999999999999999998777
Q ss_pred CccCChHHHHHHHHhcCCeEEEechhHHHHHhhhcc------ccccccc----------cCCccccCCCCccchhhhccC
Q psy14338 1261 NLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEA------SNVVDIK----------SWPTILDTDDMPKKKLAALYR 1324 (1761)
Q Consensus 1261 ~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~------~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 1324 (1761)
+ ++.+++++++++++|++......+..... ..++... .+...... ........
T Consensus 110 ~------~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 178 (529)
T 2v7b_A 110 A------DYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDA-----AAPAAKAA 178 (529)
T ss_dssp H------HHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHHHHT-----SCCCSSCC
T ss_pred H------HHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhhhcc-----CCCccccc
Confidence 6 99999999999999999876654433211 0011000 00000000 00011123
Q ss_pred CCCCCCEEEEEeccCCCCCCceEEccHHHH-HHHHHHHHHHcCcCCCCeEEEEeCCccChhHHHHHHHHhhcCceEEEeC
Q psy14338 1325 APTAEMLAYLDFSVSTTGMLAGIKMSHAAV-TSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIP 1403 (1761)
Q Consensus 1325 ~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~L~~G~~~vl~~ 1403 (1761)
...+++++||+|||||||+||||+++|+++ .+........+++.++|+++.++|++|.+++...++.+|..|+++++.+
T Consensus 179 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~ 258 (529)
T 2v7b_A 179 ATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMA 258 (529)
T ss_dssp CCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCC
T ss_pred CCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEec
Confidence 457899999999999999999999999999 6666555566788899999999999999888666788999999999885
Q ss_pred CCccccCHHHHHHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCCCCCcceEEEeecCCCChHHHHHHHHHHHhhC
Q psy14338 1404 PSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSAL 1483 (1761)
Q Consensus 1404 ~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~~l~~Lr~v~~gGe~l~~~~l~~~~~~~~~~~ 1483 (1761)
+ .+++..+++.|+++++|+++++|+++..+++.. ........+||.+++|||++++ .+.++|.+.++
T Consensus 259 ~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------~~~~~~~~~lr~~~~gGe~l~~-~~~~~~~~~~g-- 325 (529)
T 2v7b_A 259 E---RPTADAIFARLVEHRPTVFYGVPTLYANMLVSP-------NLPARADVAIRICTSAGEALPR-EIGERFTAHFG-- 325 (529)
T ss_dssp S---CCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCT-------TCCCGGGCCCCEEEECSSCCCH-HHHHHHHHHHS--
T ss_pred C---CCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCc-------ccccccCCceEEEEEcCCCCCH-HHHHHHHHHhC--
Confidence 3 479999999999999999999999999987631 1111112389999999999999 88888888773
Q ss_pred CCCCccccccccccccceeeecCCCCCCCceeEecccccccCcceecccCCCCccceeccccccCCcEEEEEcCCCCCCC
Q psy14338 1484 GLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLPGVKVIIANPETKGQC 1563 (1761)
Q Consensus 1484 g~~e~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~~~ 1563 (1761)
+.+++.||+||++.++...... ....+++|+|++|++++|+|++ ++++
T Consensus 326 ----~~i~~~YG~TE~~~~~~~~~~~---------------------------~~~~~~~G~p~~~~~~~i~d~~-g~~~ 373 (529)
T 2v7b_A 326 ----CEILDGIGSTEMLHIFLSNRAG---------------------------AVEYGTTGRPVPGYEIELRDEA-GHAV 373 (529)
T ss_dssp ----CCEEEEEECTTTSSEEEECCTT---------------------------CCCTTSCCEECTTCEEEEECTT-SCBC
T ss_pred ----CceeeeEchhhcCceeeccccC---------------------------CCccCCcccCCCCCEEEEECCC-CCCC
Confidence 5799999999985443322110 0112459999999999999955 8999
Q ss_pred CCCcceEEEEcCCcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEeccCCCCCCCCCCCCCCCcccceEE
Q psy14338 1564 GDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDAVF 1643 (1761)
Q Consensus 1564 p~G~~GEL~i~g~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~~~~~d~d~~~~~~g~G~~~~~l~ 1643 (1761)
|.|++|||+|+|++++.|||| +|+.|+++|. ++||+|||+|++ ++| |+ |+
T Consensus 374 ~~g~~GEl~v~g~~~~~gY~~---~~~~t~~~f~---------~~~~~TGDl~~~------~~~--------G~----l~ 423 (529)
T 2v7b_A 374 PDGEVGDLYIKGPSAAVMYWN---NREKSRATFL---------GEWIRSGDKYCR------LPN--------GC----YV 423 (529)
T ss_dssp CTTSCEEEEEECTTCCCCBTT---CHHHHHHHEE---------TTEEEEEEEEEE------CTT--------SC----EE
T ss_pred CCCCccEEEEecCCcccccCC---ChHHHHHhhh---------cCCcccCceEEE------CCC--------cc----EE
Confidence 999999999999999999999 9999999993 689999999999 999 99 99
Q ss_pred EEcccCCeEEeCCeecChHHHHHHHHHhccCcceeEEEee----CCeEEEEEEeCCCc----hhHhhHHHHHHHHHhhhc
Q psy14338 1644 VVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW----TNLLVVVVELDGNE----SEALDLVPLVTNAVLEEH 1715 (1761)
Q Consensus 1644 ~~GR~dd~Iki~G~rI~~~eIE~~~l~~~p~V~~a~Vv~~----~~~~~a~v~~~~~~----~~~~~l~~~l~~~~Lp~~ 1715 (1761)
|+||+|||||++|+||+|.|||+ +|.+||+|.+|+|++. ++.++++|+..... ...++|+++|+++ || .
T Consensus 424 ~~GR~dd~ik~~G~~v~p~eIE~-~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~-L~-~ 500 (529)
T 2v7b_A 424 YAGRSDDMLKVSGQYVSPVEVEM-VLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREFAPSEILAEELKAFVKDR-LA-P 500 (529)
T ss_dssp EEEEGGGCBC----CBCHHHHHH-HHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHTT-SC-T
T ss_pred EeCccCCeEEECCEEECHHHHHH-HHHhCCCcceEEEEEecCCCceEEEEEEEecCCCCcchhHHHHHHHHHHhh-cc-h
Confidence 99999999999999999999999 8999999999999985 34678888874322 1346899999986 88 9
Q ss_pred CceeeEEEEECCCCccCCCchhhhHHHHHH
Q psy14338 1716 HLIVGVAVVVDPGVVPINSRGEKQRMHLRD 1745 (1761)
Q Consensus 1716 ~~vP~~i~~v~~~~lP~t~~GKvdR~~L~~ 1745 (1761)
||+|+.|++++ +||+|+|||+||++|++
T Consensus 501 ~~~P~~i~~v~--~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 501 HKYPRDIVFVD--DLPKTATGKIQRFKLRE 528 (529)
T ss_dssp TTSCSEEEEES--CCCBCTTSCBCHHHHHC
T ss_pred hhCCeEEEEec--cCCCCCccchhHHhHhh
Confidence 99999999999 99999999999999986
No 58
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=2.7e-66 Score=667.51 Aligned_cols=475 Identities=14% Similarity=0.113 Sum_probs=368.4
Q ss_pred ccccccccccCCCCcCCCCCCCceEEccCCCCceeeCHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCHHHHHHHHH
Q psy14338 1164 TGYLGFLRRTSPAGVAGAPVPPGVSSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYG 1243 (1761)
Q Consensus 1164 ~~~~~~~~~~~~~~a~~~P~~~Av~~~d~~~~~~~lTY~eL~~~a~~lA~~L~~~~Gv~~gd~V~i~~~~s~~~iva~lA 1243 (1761)
++++.|.+++. ++||++|++ ++++++||+||+++++++|++|++. +||+|+|+++|++++++++||
T Consensus 2 tl~~~l~~~a~-----~~pd~~Al~-----~~~~~~Ty~eL~~~~~~lA~~L~~~----~gd~V~i~~~n~~e~~~~~lA 67 (501)
T 3ipl_A 2 SLDFWLYKQAQ-----QNGHHIAIT-----DGQESYTYQNLYCEASLLAKRLKAY----QQSRVGLYIDNSIQSIILIHA 67 (501)
T ss_dssp -CCCHHHHHHH-----HHTTSEEEE-----CSSCEEEHHHHHHHHHHHHHHHHTT----CCSEEEEECCSSHHHHHHHHH
T ss_pred CHHHHHHHHHH-----hcCCceEEE-----eCCcEEEHHHHHHHHHHHHHHHHHc----CCCEEEEEcCCCHHHHHHHHH
Confidence 34555666654 679999999 7889999999999999999999875 899999999999999999999
Q ss_pred HHHcCCEEEeCCCCCCCCccCChHHHHHHHHhcCCeEEEechhHHHHHhhhccccccc----cccCCcc----------c
Q psy14338 1244 CLYVGAVPVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVD----IKSWPTI----------L 1309 (1761)
Q Consensus 1244 ~l~aG~~~vpldp~~P~~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~----~~~~~~~----------~ 1309 (1761)
|+++|+++|||+|.+|.+ ++.+++++++++++|++...............+. ....... .
T Consensus 68 ~~~~Gav~vpl~~~~~~~------~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (501)
T 3ipl_A 68 CWLANIEIAMINTRLTPN------EMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDT 141 (501)
T ss_dssp HHHTTCEEEECCTTSCHH------HHHHHHHHTTCCEEEESSCCCCTTSEEEETTC------------------------
T ss_pred HHHcCCEEEecCccCCHH------HHHHHHHhcCCCEEEEccccccccccccccccceeeeeeccccccccccccccccc
Confidence 999999999999988777 9999999999999999875432211100000000 0000000 0
Q ss_pred cCCCC-c-cchhhhccCCCCCCCEEEEEeccCCCCCCceEEccHHHHHHHHHHHHHHcCcCCCCeEEEEeCCccChhHHH
Q psy14338 1310 DTDDM-P-KKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFAL 1387 (1761)
Q Consensus 1310 ~~~~~-~-~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 1387 (1761)
..... . ............++++|||+|||||||.||||+++|+++.+.+.+....+++.++|+++.++|++|..++ .
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~ 220 (501)
T 3ipl_A 142 SNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGL-S 220 (501)
T ss_dssp --------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHH-H
T ss_pred chhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHH-H
Confidence 00000 0 0111122334678999999999999999999999999999999999999999999999999999888887 4
Q ss_pred HHHHHhhcCceEEEeCCCccccCHHHHHHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCCCCCcceEEEeecCCC
Q psy14338 1388 WVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEER 1467 (1761)
Q Consensus 1388 ~~~~~L~~G~~~vl~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~~l~~Lr~v~~gGe~l 1467 (1761)
.++.+++.|+++++.+. +++..+++.|+++++|+++++|+++..|++.. .....+||.+++|||++
T Consensus 221 ~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~----------~~~~~~lr~i~~gG~~l 286 (501)
T 3ipl_A 221 VLLRAVIEGFTVRIVDK----FNAEQILTMIKNERITHISLVPQTLNWLMQQG----------LHEPYNLQKILLGGAKL 286 (501)
T ss_dssp HHHHHHHHTCEEEECSS----CCHHHHHHHHHHSCCCEEEECHHHHHHHHHHT----------CCSCTTCCEEEECSSCC
T ss_pred HHHHHHHcCceEEeCCC----CCHHHHHHHHHHcCCcEEEchHHHHHHHHhcC----------CCCcCcccEEEEeCCCC
Confidence 58899999999999874 79999999999999999999999999997742 11223899999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCCccccccccccccceeeecCCCCCCCceeEecccccccCcceecccCCCCccceecccccc
Q psy14338 1468 PRIHLTSAFSKLFSALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLL 1547 (1761)
Q Consensus 1468 ~~~~l~~~~~~~~~~~g~~e~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~ 1547 (1761)
++ .+.+++.+. | ..+++.||+||++..+.... .... ..+..++|+|+
T Consensus 287 ~~-~~~~~~~~~----~---~~~~~~YG~TE~~~~~~~~~-----------~~~~--------------~~~~~~~G~p~ 333 (501)
T 3ipl_A 287 SA-TMIETALQY----N---LPIYNSFGMTETCSQFLTAT-----------PEML--------------HARPDTVGMPS 333 (501)
T ss_dssp CH-HHHHHHHHT----T---CCEEEEEEEGGGTEEEEEEC-----------HHHH--------------HHCTTCCBEEC
T ss_pred CH-HHHHHHHHh----C---CCEeccccccccccceeecC-----------cccc--------------ccCCCCCCCCC
Confidence 99 777776652 3 57999999999865432211 0000 01123599999
Q ss_pred CCcEEEEEcCCCCCCCCCCcceEEEEcCCcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEeccCCCCCC
Q psy14338 1548 PGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVA 1627 (1761)
Q Consensus 1548 ~~~~~~v~d~~~~~~~p~G~~GEL~i~g~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~~~~~d~d 1627 (1761)
+|++++|+|++ .|..|||+|+|+++++|||| +|+.|++ | .+|||+|||+|++ |+|
T Consensus 334 ~~~~~~i~d~~------~~~~GEl~v~g~~~~~gY~~---~~~~t~~-~---------~~g~~~TGDl~~~------~~~ 388 (501)
T 3ipl_A 334 ANVDVKIKNPN------KEGHGELMIKGANVMNGYLY---PTDLTGT-F---------ENGYFNTGDIAEI------DHE 388 (501)
T ss_dssp TTCEEEEESCC------SSCCEEEEEESTTSCSCCSB---STTCCCS-E---------ETTEEEEEEEEEE------CTT
T ss_pred CCcEEEEecCC------CCCccEEEEeccchhhhhCc---Chhhcch-h---------cCCceecCCEEEE------cCC
Confidence 99999999965 46789999999999999999 9999887 6 4689999999999 999
Q ss_pred CCCCCCCCCcccceEEEEcccCCeEEeCCeecChHHHHHHHHHhccCcceeEEEee-----CCeEEEEEEeCCCchhHhh
Q psy14338 1628 GAPVPPGVSKLHDAVFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELDGNESEALD 1702 (1761)
Q Consensus 1628 ~~~~~~g~G~~~~~l~~~GR~dd~Iki~G~rI~~~eIE~~~l~~~p~V~~a~Vv~~-----~~~~~a~v~~~~~~~~~~~ 1702 (1761)
|+ ++|+||+|||||++|+||+|.|||+ +|.+||+|.+|+|++. ++.++++++.. ...+.++
T Consensus 389 --------G~----l~~~GR~dd~ik~~G~~v~p~eiE~-~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~-~~~~~~~ 454 (501)
T 3ipl_A 389 --------GY----VMIYDRRKDLIISGGENIYPYQIET-VAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE-SDISKAQ 454 (501)
T ss_dssp --------SC----EEEEEECCCCEECSSCEECHHHHHH-HHTTSTTEEEEEEEEEEETTTEEEEEEEEEES-SCCCHHH
T ss_pred --------Ce----EEEEccccceEEECCEEECHHHHHH-HHHhCCCccEEEEEEEecccCCceEEEEEEeC-CCCCHHH
Confidence 99 9999999999999999999999999 8999999999999975 34677777764 4567889
Q ss_pred HHHHHHHHHhhhcCceeeEEEEECCCCccCCCchhhhHHHHHHHHHc
Q psy14338 1703 LVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 1749 (1761)
Q Consensus 1703 l~~~l~~~~Lp~~~~vP~~i~~v~~~~lP~t~~GKvdR~~L~~~~~~ 1749 (1761)
|+++|+++ || .||+|+.|++++ +||+|+||||||++|++....
T Consensus 455 l~~~l~~~-L~-~~~~P~~i~~v~--~lP~t~~GKi~R~~l~~~~~~ 497 (501)
T 3ipl_A 455 LIAYLSKH-LA-KYKVPKHFEKVD--TLPYTSTGKLQRNKLYREGHH 497 (501)
T ss_dssp HHHHHHHH-SC-GGGSCSEEEECS--SCC------------------
T ss_pred HHHHHHhh-Cc-cccCCCEEEEec--ccCCCCCCCEeHHHHhhcccc
Confidence 99999997 98 999999999999 999999999999999998643
No 59
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=2.1e-65 Score=672.52 Aligned_cols=535 Identities=19% Similarity=0.298 Sum_probs=415.5
Q ss_pred cccccccccccCCCCcCCCCCCCceEEccCCCCceeeCHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCHHHHHHHH
Q psy14338 1163 RTGYLGFLRRTSPAGVAGAPVPPGVSSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFY 1242 (1761)
Q Consensus 1163 ~~~~~~~~~~~~~~~a~~~P~~~Av~~~d~~~~~~~lTY~eL~~~a~~lA~~L~~~~Gv~~gd~V~i~~~~s~~~iva~l 1242 (1761)
.++++.|..++. ++|+.+++. +....++++||+||+++++++|++|++. |+++||+|+|+++|++++++++|
T Consensus 21 ~tl~~~l~~~a~-----~~p~~~~~~--~~~~~~~~~Ty~eL~~~~~~lA~~L~~~-Gv~~gd~V~i~~~~~~~~~~~~l 92 (576)
T 3gqw_A 21 PTLVDALDYAAL-----SSAGMNFYD--RRCQLEDQLEYQTLKARAEAGAKRLLSL-NLKKGDRVALIAETSSEFVEAFF 92 (576)
T ss_dssp SSHHHHHHHHTT-----SSCEEEEEC--TTSCEEEEEEHHHHHHHHHHHHHHHHHT-CCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcHHHHHHHHhh-----CCCCeEEeC--CCCCceeEEcHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCcHHHHHHHH
Confidence 467777777665 668866654 1223568999999999999999999999 99999999999999999999999
Q ss_pred HHHHcCCEEEeCCCCCCCCc-cCChHHHHHHHHhcCCeEEEechhHHHHHhhhcccc-ccccccCCccccCCCCccchhh
Q psy14338 1243 GCLYVGAVPVTIRPPHPQNL-QTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASN-VVDIKSWPTILDTDDMPKKKLA 1320 (1761)
Q Consensus 1243 A~l~aG~~~vpldp~~P~~~-~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 1320 (1761)
||+++|+++|||+|.+|.+. ....+++.+++++++++++|++.+....+....... .+...... ... .... ..
T Consensus 93 A~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~--~~ 167 (576)
T 3gqw_A 93 ACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVLSHA-WFK--ALPE--AD 167 (576)
T ss_dssp HHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCEEEEHH-HHH--TSCC--CC
T ss_pred HHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCcceecchh-hhh--cccc--cc
Confidence 99999999999999887321 111359999999999999999988766654432211 00000000 000 0000 01
Q ss_pred hccCCCCCCCEEEEEeccCCCCCCceEEccHHHHHHHHHHHHHH-cCcCCCCeEEEEeCCccChhHHHHHHHHhhcCceE
Q psy14338 1321 ALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLA-CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHS 1399 (1761)
Q Consensus 1321 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~L~~G~~~ 1399 (1761)
.......+++++||+|||||||.||||+++|+++++.+.+.... +++.++|+++.++|++|++++...++.++..|+++
T Consensus 168 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~ 247 (576)
T 3gqw_A 168 VALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSV 247 (576)
T ss_dssp CCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCE
T ss_pred cccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHHHHHHHHhcCceE
Confidence 11234568999999999999999999999999999998887665 88999999999999999999866678889999999
Q ss_pred EEeCCCccccCHHHHHHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCCCCCcceEEEeecCCCChHHHHHHHHHH
Q psy14338 1400 ILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKL 1479 (1761)
Q Consensus 1400 vl~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~~l~~Lr~v~~gGe~l~~~~l~~~~~~~ 1479 (1761)
++.+..+..+++..+++.|+++++|+++++|+++..+.+.+ ........++++||.+++|||++++ .+.++|.+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~----~~~~~~~~~l~~lr~~~~gg~~l~~-~~~~~~~~~ 322 (576)
T 3gqw_A 248 DYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRV----NEKDLAELDLSCWRVAGIGAEPISA-EQLHQFAEC 322 (576)
T ss_dssp EECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSC----CHHHHTTCCCTTCCEEEECSSCCCH-HHHHHHHHH
T ss_pred EEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHh----cccccccCChhhhHhhhccCccCCH-HHHHHHHHH
Confidence 98875444468999999999999999999999999886642 2233456779999999999999999 888999999
Q ss_pred HhhCCCCCccccccccccccceeeecCCCCCCCceeEecccccccCcceecccC--CCCccceeccccccCCcEEEEEcC
Q psy14338 1480 FSALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERG--SPHSLCLLESGKLLPGVKVIIANP 1557 (1761)
Q Consensus 1480 ~~~~g~~e~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~iG~p~~~~~~~v~d~ 1557 (1761)
++..+.....+++.||+||++.+++.............+....... .....++ .......+++|+|++|++++|+|
T Consensus 323 ~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d- 400 (576)
T 3gqw_A 323 FRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQ-GKAVAPGAETRAVSTFVNCGKALPEHGIEIRN- 400 (576)
T ss_dssp HGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHH-CBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-
T ss_pred HhhcCCCcccccccCCcccccceeecccccCCccccccchhhhccc-CcccccCccccCccceeecCCcCCCCeEEEEC-
Confidence 9877766688999999999988766543322111111110000000 0000011 11112345899999999999999
Q ss_pred CCCCCCCCCcceEEEEcCCcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEeccCCCCCCCCCCCCCCCc
Q psy14338 1558 ETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSK 1637 (1761)
Q Consensus 1558 ~~~~~~p~G~~GEL~i~g~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~~~~~d~d~~~~~~g~G~ 1637 (1761)
++++++|.|++|||+|+|+++++|||| +|+.|++.| .+|||||||+|++ + | |+
T Consensus 401 ~~g~~~~~g~~GEl~v~g~~~~~gY~~---~~~~~~~~~---------~~g~~~TGDl~~~------~-d--------G~ 453 (576)
T 3gqw_A 401 EAGMPVAERVVGHICISGPSLMSGYFG---DQVSQDEIA---------ATGWLDTGDLGYL------L-D--------GY 453 (576)
T ss_dssp TTSCBCCTTBCEEEEEESTTSCCCBTT---CHHHHHHHH---------HHSCEEEEEEEEE------E-T--------TE
T ss_pred CCCCCCCCCCeEEEEEeCccccccccC---Ccccccccc---------CCCeeeccceEEE------E-C--------CE
Confidence 458999999999999999999999999 999988876 4789999999988 4 7 99
Q ss_pred ccceEEEEcccCCeEEeCCeecChHHHHHHHHHhccCcceeEEEee---CCeEEEEEEe-CCCchhHhhHHHHHHHHHhh
Q psy14338 1638 LHDAVFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW---TNLLVVVVEL-DGNESEALDLVPLVTNAVLE 1713 (1761)
Q Consensus 1638 ~~~~l~~~GR~dd~Iki~G~rI~~~eIE~~~l~~~p~V~~a~Vv~~---~~~~~a~v~~-~~~~~~~~~l~~~l~~~~Lp 1713 (1761)
|+|+||+|||||++|+||+|.|||+ +|.+||+|.+|+|++. ++.+.+++.. .......++++++++++ |.
T Consensus 454 ----l~~~GR~dd~ik~~G~~v~p~eIE~-~l~~~p~V~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-l~ 527 (576)
T 3gqw_A 454 ----LYVTGRIKDLIIIRGRNIWPQDIEY-IAEQEPEIHSGDAIAFVTAQEKIILQIQCRISDEERRGQLIHALAAR-IQ 527 (576)
T ss_dssp ----EEEEEETTTCEEETTEEECHHHHHH-HHTTSSSCCTTSEEEEECTTSCEEEEEECCCCCHHHHHHHHHHHHHH-HH
T ss_pred ----EEEEecCcceEEECCEEECHHHHHH-HHHhCcccccccEEEEEcCCccEEEEEEEecCchhHHHHHHHHHHHH-HH
Confidence 9999999999999999999999999 8999999999888764 2344444443 33445667899999987 53
Q ss_pred hcCceeeEEEEECCCCccCCCchhhhHHHHHHHHHcC
Q psy14338 1714 EHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 1750 (1761)
Q Consensus 1714 ~~~~vP~~i~~v~~~~lP~t~~GKvdR~~L~~~~~~~ 1750 (1761)
+.|++|..+.+++.++||+|+|||+||++|++.+.+.
T Consensus 528 ~~~~~p~~i~~v~~~~lP~t~~GKi~r~~l~~~~~~~ 564 (576)
T 3gqw_A 528 SEFGVTAAIDLLPPHSIPRTSSGKPARAEAKKRYQKA 564 (576)
T ss_dssp HHHSCCEEEEEECSSCSCBCTTSSBCHHHHHHHHHHH
T ss_pred HHhCCceeEEEECCCCcCcCCCccchHHHHHHHHHHH
Confidence 3899999999997668999999999999999998543
No 60
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1.2e-66 Score=680.37 Aligned_cols=496 Identities=15% Similarity=0.140 Sum_probs=303.2
Q ss_pred ccccccccccccCCCCcCCCCCCCceEEccCC-----CCceeeCHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCHH
Q psy14338 1162 ARTGYLGFLRRTSPAGVAGAPVPPGVSSVDTR-----SAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGID 1236 (1761)
Q Consensus 1162 ~~~~~~~~~~~~~~~~a~~~P~~~Av~~~d~~-----~~~~~lTY~eL~~~a~~lA~~L~~~~Gv~~gd~V~i~~~~s~~ 1236 (1761)
..++.+.|.+++. ++||++|+++.+.. ..++++||+||+++++++|+.|.+. |+ +||+|+|+++|+++
T Consensus 19 ~~tl~~~l~~~a~-----~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~-g~-~gd~V~i~~~n~~~ 91 (562)
T 3ite_A 19 TVPPSHYIETWAK-----THPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHA-SL-HGRAIAVSLDRSLI 91 (562)
T ss_dssp CCCTTHHHHHHHH-----HCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHT-TC-SSCEEEEECCSCHH
T ss_pred cCCHHHHHHHHHH-----HCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhc-CC-CCCEEEEEeCCCHH
Confidence 3456777777765 77999999964421 1247999999999999999999998 89 79999999999999
Q ss_pred HHHHHHHHHHcCCEEEeCCCCCCCCccCChHHHHHHHHhcCCeEEEechhHHHHHhhhcccccccccc--CCccccCCCC
Q psy14338 1237 LICAFYGCLYVGAVPVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKS--WPTILDTDDM 1314 (1761)
Q Consensus 1237 ~iva~lA~l~aG~~~vpldp~~P~~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 1314 (1761)
+++++|||+|+|+++|||+|.+|.+ ++.+++++++++++|++...............+.... +......
T Consensus 92 ~~~~~lA~~~~Gav~vpl~~~~~~~------~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 162 (562)
T 3ite_A 92 AFAIIVGIMKSGNTYVPIEAGLPND------RKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIENLST--- 162 (562)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHH------HHHHHHHHHTCSEEEECTTTTTTCCCCTTCEEEETTCHHHHHHHHH---
T ss_pred HHHHHHHHHHhCCEEEecCCcCHHH------HHHHHHHhcCCCEEEEccccccccccCccceeecccchhhhhhccc---
Confidence 9999999999999999999988777 9999999999999999865432111000000000000 0000000
Q ss_pred ccchhhhccCCCCCCCEEEEEeccCCCCCCceEEccHHHHHHHHHHHHHH--------cCcCCCCeEEEEeCCccChhHH
Q psy14338 1315 PKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLA--------CELYPSRHIALCLDPYCGLGFA 1386 (1761)
Q Consensus 1315 ~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~--------~~~~~~d~~~~~~~~~~~~~~~ 1386 (1761)
...........++++|||+|||||||+||||+++|+++.+.+.++... +.+...++++...++.|+.+.
T Consensus 163 --~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 239 (562)
T 3ite_A 163 --QDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHI- 239 (562)
T ss_dssp --SCCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHH-
T ss_pred --ccccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhH-
Confidence 000111233457889999999999999999999999999988776654 346777788888888887776
Q ss_pred HHHHHHhhcCceEEEeCCCccccCHHHHHHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCCCCCcceEEEeecCC
Q psy14338 1387 LWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEE 1466 (1761)
Q Consensus 1387 ~~~~~~L~~G~~~vl~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~~l~~Lr~v~~gGe~ 1466 (1761)
..++.++..|+++++.+. ...+..+.+.++++++|+++++|++++.+.. ...++++||.+++||++
T Consensus 240 ~~~~~~l~~g~~~~~~~~---~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~-----------~~~~~~~lr~~~~gG~~ 305 (562)
T 3ite_A 240 GEMFLAWRFGLCAVTGER---LSMLDDLPRTFRELGVTHAGIVPSLLDQTGL-----------VPEDAPHLVYLGVGGEK 305 (562)
T ss_dssp HHHHHHHHTTCEEEECCH---HHHHHSHHHHHHHTTCCEEEECHHHHHHHTC-----------CGGGSTTCCEEEEESSC
T ss_pred HHHHHHHhcccEEEecch---hhCHHHHHHHHHHcCCCEEEcCHHHHhhccc-----------CccccCceEEEEEecCC
Confidence 678899999999998774 2346788999999999999999999887732 34468899999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCCccccccccccccceeeecCCCCCCCceeEecccccccCcceecccCCCCccceeccccc
Q psy14338 1467 RPRIHLTSAFSKLFSALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKL 1546 (1761)
Q Consensus 1467 l~~~~l~~~~~~~~~~~g~~e~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p 1546 (1761)
+++ .+.++|.+.+ | ..+++.||+||++..++...... .....++|+|
T Consensus 306 l~~-~~~~~~~~~~---~---~~~~~~YG~TE~~~~~~~~~~~~--------------------------~~~~~~~G~p 352 (562)
T 3ite_A 306 MTP-RTQQIWSSSD---R---VALVNVYGPTEVTIGCSAGRILP--------------------------DSDTRCIGHP 352 (562)
T ss_dssp CCH-HHHHHHTTCS---S---CEEEEEECCGGGCSCSEEEECCT--------------------------TSCTTEEEEE
T ss_pred CCH-HHHHHHhhCC---C---cEEEEeeccchheeeeeeeeecC--------------------------CCCCcccccc
Confidence 999 7777665533 2 68999999999865443211100 0112459999
Q ss_pred cCCcEEEEEcCCCCCCCCCCcceEEEEcCCcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEeccCCCCC
Q psy14338 1547 LPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGV 1626 (1761)
Q Consensus 1547 ~~~~~~~v~d~~~~~~~p~G~~GEL~i~g~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~~~~~d~ 1626 (1761)
+++++++|+|+++++++|.|++|||+|+|+++++|||| +|+.|+..|. ++++||||||+|++ |+
T Consensus 353 ~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~---~p~~t~~~~~-------~g~~w~~TGDlg~~------d~ 416 (562)
T 3ite_A 353 LGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLN---RPDAKGFCDI-------NGRKMYRTGDIVRM------DA 416 (562)
T ss_dssp CTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESS---CTTCCSEEEE-------TTEEEEEEEEEEEE------CT
T ss_pred CCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCC---CccccccccC-------CCCEEEecCCEEEE------cC
Confidence 99999999998888999999999999999999999999 9999886552 45789999999999 99
Q ss_pred CCCCCCCCCCcccceEEEEcccCCeEEeCCeecChHHHHHHHHHhc-cCcceeEEEee-----CCe-EEEEEEeCCCch-
Q psy14338 1627 AGAPVPPGVSKLHDAVFVVGALDETIMLRGMRYHPIDIENSVMRAH-KKIAECAVFTW-----TNL-LVVVVELDGNES- 1698 (1761)
Q Consensus 1627 d~~~~~~g~G~~~~~l~~~GR~dd~Iki~G~rI~~~eIE~~~l~~~-p~V~~a~Vv~~-----~~~-~~a~v~~~~~~~- 1698 (1761)
| |+ |+|+||+|||||++|+||+|.|||+ +|.+| |.|.+++|++. ++. +++++...+...
T Consensus 417 d--------G~----l~~~GR~dd~Ik~~G~~v~p~eIE~-~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~ 483 (562)
T 3ite_A 417 D--------SS----ILFLGRKDEQVKVRGQRLELGEVSE-VIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVR 483 (562)
T ss_dssp T--------SC----EEEEEEC----------------------------------------------------------
T ss_pred C--------Ce----EEEEccccCEEeECcEEECHHHHHH-HHHhcCCCceeEEEEEecCCCCcceEEEEEEeccccccc
Confidence 9 99 9999999999999999999999999 78887 77888888753 233 444444332222
Q ss_pred ------------hHhhHHHHHHHHHhhhcCceeeEEEEECCCCccCC-CchhhhHHHHHHHHHcCCCChhh
Q psy14338 1699 ------------EALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPIN-SRGEKQRMHLRDGFLADQLDPIY 1756 (1761)
Q Consensus 1699 ------------~~~~l~~~l~~~~Lp~~~~vP~~i~~v~~~~lP~t-~~GKvdR~~L~~~~~~~~~~~~~ 1756 (1761)
..++|+++|+++ || .||+|+.|++++ +||+| ++||+||++|++++.+....+++
T Consensus 484 ~~~~~~~~~~~~~~~~l~~~~~~~-L~-~y~~P~~i~~v~--~lP~t~~~GKi~r~~L~~~~~~~~~~~~~ 550 (562)
T 3ite_A 484 GELRWINENYKEINNSLRQACEQT-LP-AYMVPDFIIPIS--FIPLRDTSAKTDAKALEHMFHTLSLGELF 550 (562)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ccccccccchhhHHHHHHHHHHhh-CC-cccCCcEEEEec--cCCCCCCCCcchHHHHHHHHhccCHHHHh
Confidence 134899999997 98 999999999999 99998 99999999999998765554443
No 61
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=1.9e-57 Score=582.94 Aligned_cols=442 Identities=21% Similarity=0.303 Sum_probs=328.5
Q ss_pred chhHHHHHHHHhhhcCCCcEEEEECC---CCceeEEEeHHHHHHHHHHHHHHhhcCCCCccccCCCCCCCEEEEEccCCC
Q psy14338 80 PRNLEAAIQRYGSATYKAPVATVLDP---NGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNND 156 (1761)
Q Consensus 80 ~~~l~~~~~~~a~~~pd~~Av~~~d~---~g~~~~~lTY~eL~~~a~~lA~~L~~~~~~~~~~~Gv~~g~~V~l~~~~s~ 156 (1761)
..+|.++|+++++++||++|+++.+. .+...+++||+||+++++++|+.|+ +.|+ +||+|+|+++|+
T Consensus 23 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~--------~~g~-~gd~V~i~~~n~- 92 (480)
T 3t5a_A 23 VRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELS--------RCGS-TGDRVVISAPQG- 92 (480)
T ss_dssp -CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHT--------TSSC-TTCEEEEECCSS-
T ss_pred cccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHH--------hcCC-CCCEEEEEcCCc-
Confidence 46899999999999999999998762 1222368999999999999999999 8896 999999999999
Q ss_pred chhHHHHHHHHHHhCCeEEecCC---CCCcCccchhHHHHHHhcCCCcEEEEcccccccCcccccccceeccCCCcceeE
Q psy14338 157 PINFLCAFYGCIFAGIVPVPIEV---PLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKLTWF 233 (1761)
Q Consensus 157 ~~~~vva~lAvlkaG~~~vpldp---~~p~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (1761)
+++++++|||+|+|+++|||++ .++.+ |+.+++++++++++|++......+....... .......+.
T Consensus 93 -~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~-----~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~----~~~~~~~~~ 162 (480)
T 3t5a_A 93 -LEYVVAFLGALQAGRIAVPLSVPQGGVTDE-----RSDSVLSDSSPVAILTTSSAVDDVVQHVARR----PGESPPSII 162 (480)
T ss_dssp -HHHHHHHHHHHHTTCEEEEECSCCSCTTCC-----HHHHHHHHHCCSEEEECTTTHHHHHHTCC----------CCEEE
T ss_pred -HHHHHHHHHHHHhCcEEEeeCCCCccchHH-----HHHHHHHhCCCCEEEeChhHHHHHHHHHhcc----cccccccee
Confidence 9999999999999999999999 66665 8999999999999999987654332211100 000000111
Q ss_pred EeccccCCCCCCCCCCCCCCCCcEEEEecCCCCCCceEEEEchHHHHHHHHHHHHHcCCCC------CCeEEEccCCcch
Q psy14338 234 VTEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACHYTE------GENMVCVLDFKRE 307 (1761)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~------~d~~l~~~~~~~~ 307 (1761)
..+................++++|||+|||||||+||||+++|+++.+.+.+....+++.+ +|++++++|++|+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 242 (480)
T 3t5a_A 163 EVDLLDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHD 242 (480)
T ss_dssp EGGGSCTTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTST
T ss_pred EecccccccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCc
Confidence 1122111111222334567899999999999999999999999999999999988888887 9999999999999
Q ss_pred hhhHHHHHHHHhcCcEEEEeCCccccCCHHHHHHHHHhcCceEEEecCHHHHHHhhcC----CCCCCCCCCceeEEEecC
Q psy14338 308 TGLWHSVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLAT----KDHKDISLSSLRLLLVGD 383 (1761)
Q Consensus 308 ~~~~~~i~~~L~~G~~lvi~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~~ll~~----~~~~~~~l~~Lr~v~~gg 383 (1761)
+++...++.+|+.|+++++.++..+.+++..+++.|+++++| +..+|+ ++..++.. ......++++||.+++|
T Consensus 243 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~-~~~~l~~~~~~~~~~~~~~l~~lr~i~~g- 319 (480)
T 3t5a_A 243 MGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPN-FAFELAARRTTDDDMAGRDLGNILTILSG- 319 (480)
T ss_dssp THHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECH-HHHHHHHHHCCTGGGTTCCCTTCCEEEEC-
T ss_pred cHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChH-HHHHHHHhhcCcccccccchhhhheeeec-
Confidence 997656899999999999987432225899999999999999 777875 66555542 34445678999999999
Q ss_pred CCccCCHHHHHHHHHHhhhCCCCCCccccccccccccceEeecCCCCCcccCCCccccccCcccceeeecCCCccCcccc
Q psy14338 384 GANPWSLSSCDQFLSVFQSKGLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTL 463 (1761)
Q Consensus 384 ~Ge~l~~~~~~~~~~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (1761)
|++++++++++|.+.++..|++...++|.||+||++.+++........... .+....+..+.. ...........
T Consensus 320 -G~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~--~~~~~~~~~~~ 393 (480)
T 3t5a_A 320 -SERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETV---DFDTESLSAGHA--KPCAGGGATSL 393 (480)
T ss_dssp -CTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEE---EECHHHHHTTBC--CCCCSSSCEEE
T ss_pred -CCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceE---EecHHHhccCce--eecCCCCccee
Confidence 999999999999999865444444699999999999877654421100000 000000000000 00000012356
Q ss_pred cccCCCCCCcEEEEEeCCCCcccCCCCCceEEEEecCCccccccCCCccccccccccccccCCCccCCCceEeecceEEE
Q psy14338 464 QDCGQVMPGCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGFL 543 (1761)
Q Consensus 464 ~~iG~p~~~~~~~I~d~~~~~~~~p~G~~GEL~i~G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~~ 543 (1761)
.++|+|++ ++++|+|+++. .+||.|++|||+|+|+++++||||+|++|+++|..+++.+.. ..+++|||||||+|++
T Consensus 394 ~~~G~p~~-~~~~ivd~~~g-~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~-~~~~~~w~~TGDlg~~ 470 (480)
T 3t5a_A 394 ISYMLPRS-PIVRIVDSDTC-IECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSP-GTPEGPWLRTGDSGFV 470 (480)
T ss_dssp ECEECCSS-SEEEEEETTTT-EECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCT-TCCCCCBEEEEEEEEE
T ss_pred eecCcccC-CEEEEEcCCCC-cCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccC-CCCCCCeeeccceeeE
Confidence 79999999 99999998843 369999999999999999999999999999999866654321 0124789999999999
Q ss_pred eCCCeEEEEec
Q psy14338 544 GPGGLVFVCGS 554 (1761)
Q Consensus 544 ~~dG~l~~~GR 554 (1761)
+ ||+|+|+||
T Consensus 471 d-dG~l~~~GR 480 (480)
T 3t5a_A 471 T-DGKMFIIGR 480 (480)
T ss_dssp E-TTEEEECC-
T ss_pred E-CCEEEEeCC
Confidence 7 999999998
No 62
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=3.8e-55 Score=561.49 Aligned_cols=440 Identities=20% Similarity=0.274 Sum_probs=338.2
Q ss_pred ccccccccccccccCCCCcCCCCCCCceEEccCC----CCceeeCHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEcCCCH
Q psy14338 1160 LYARTGYLGFLRRTSPAGVAGAPVPPGVSSVDTR----SAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGI 1235 (1761)
Q Consensus 1160 ~~~~~~~~~~~~~~~~~~a~~~P~~~Av~~~d~~----~~~~~lTY~eL~~~a~~lA~~L~~~~Gv~~gd~V~i~~~~s~ 1235 (1761)
....++++.|.+++. ++||++|+++.+.. ...+++||+||+++++++|++|++. |+ +||+|+|+++|++
T Consensus 21 ~~~~tl~~~l~~~a~-----~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-g~-~gd~V~i~~~n~~ 93 (480)
T 3t5a_A 21 MSVRSLPAALRACAR-----LQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRC-GS-TGDRVVISAPQGL 93 (480)
T ss_dssp ---CCHHHHHHHHHH-----HSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTS-SC-TTCEEEEECCSSH
T ss_pred CCcccHHHHHHHHHH-----hCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhc-CC-CCCEEEEEcCCcH
Confidence 345677888887775 77999999975421 1228999999999999999999999 86 9999999999999
Q ss_pred HHHHHHHHHHHcCCEEEeCCC---CCCCCccCChHHHHHHHHhcCCeEEEechhHHHHHhhhcccccc----ccccCCcc
Q psy14338 1236 DLICAFYGCLYVGAVPVTIRP---PHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVV----DIKSWPTI 1308 (1761)
Q Consensus 1236 ~~iva~lA~l~aG~~~vpldp---~~P~~~~~~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~----~~~~~~~~ 1308 (1761)
++++++|||+++|+++|||+| .+|.+ ++.+++++++++++|++......+......... ....+...
T Consensus 94 e~~~~~lA~~~~G~v~vpl~~~~~~~~~~------~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (480)
T 3t5a_A 94 EYVVAFLGALQAGRIAVPLSVPQGGVTDE------RSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLL 167 (480)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCCSCTTCC------HHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGS
T ss_pred HHHHHHHHHHHhCcEEEeeCCCCccchHH------HHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEeccc
Confidence 999999999999999999999 56666 999999999999999998876655443211000 00000000
Q ss_pred ccCCCCccchhhhccCCCCCCCEEEEEeccCCCCCCceEEccHHHHHHHHHHHHHHcCcCC------CCeEEEEeCCccC
Q psy14338 1309 LDTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYP------SRHIALCLDPYCG 1382 (1761)
Q Consensus 1309 ~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~------~d~~~~~~~~~~~ 1382 (1761)
... ...........++++|||+|||||||+||||+++|+++.+.+.+....+++.+ +|+++.++|++|+
T Consensus 168 -~~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 242 (480)
T 3t5a_A 168 -DLD----APNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHD 242 (480)
T ss_dssp -CTT----CC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTST
T ss_pred -ccc----cccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCc
Confidence 000 01111234567889999999999999999999999999999999999998887 8899999999999
Q ss_pred hhHHHHHHHHhhcCceEEEeCCCccccCHHHHHHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCCCCCcceEEEe
Q psy14338 1383 LGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVV 1462 (1761)
Q Consensus 1383 ~~~~~~~~~~L~~G~~~vl~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~~l~~Lr~v~~ 1462 (1761)
+++...++.+|+.|+++++.++..+.+++..+++.|+++++| +.++|+++..++.... ........++++||.+++
T Consensus 243 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~---~~~~~~~~~l~~lr~i~~ 318 (480)
T 3t5a_A 243 MGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRT---TDDDMAGRDLGNILTILS 318 (480)
T ss_dssp THHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHC---CTGGGTTCCCTTCCEEEE
T ss_pred cHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhc---Ccccccccchhhhheeee
Confidence 998778899999999999987543335999999999999999 8889998888765321 112345678999999999
Q ss_pred ecCCCChHHHHHHHHHHHhhCCCCCccccccccccccceeeecCCCCCCCceeEecccccccCcceecccCCCCccceec
Q psy14338 1463 VAEERPRIHLTSAFSKLFSALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLE 1542 (1761)
Q Consensus 1463 gGe~l~~~~l~~~~~~~~~~~g~~e~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1542 (1761)
|||++++ ++.++|.+.+..+|.....+++.||+||++.+++.............+...+..+....... ....+..+
T Consensus 319 gG~~l~~-~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~ 395 (480)
T 3t5a_A 319 GSERVQA-ATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAG--GGATSLIS 395 (480)
T ss_dssp CCTTCCH-HHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCS--SSCEEEEC
T ss_pred cCCcCCH-HHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCC--CCcceeee
Confidence 9999999 88999999998888877899999999999987776554433333333333222221111100 11234678
Q ss_pred cccccCCcEEEEEcCCCCCCCCCCcceEEEEcCCcccccccCCCCChhhhHHHhhhhcc---cCCCCCceEeeCceeEEe
Q psy14338 1543 SGKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLV---TGNTGELYARTGYLGFLR 1619 (1761)
Q Consensus 1543 iG~p~~~~~~~v~d~~~~~~~p~G~~GEL~i~g~~v~~GY~~~~~~p~~t~~~F~~~p~---~~~~~~~~yrTGDlg~~~ 1619 (1761)
+|+|++ ++++|+|++++++||.|++|||+|+|+++++|||| +|++|+++|..+++ .+.+++|||||||+|++
T Consensus 396 ~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~---~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~- 470 (480)
T 3t5a_A 396 YMLPRS-PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQ---KPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFV- 470 (480)
T ss_dssp EECCSS-SEEEEEETTTTEECCTTBCEEEEEESTTSCCCBTT---BHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEE-
T ss_pred cCcccC-CEEEEEcCCCCcCCCCCCEEEEEEeCCcccccccc---CcchhHHHHhhhhccccCCCCCCCeeeccceeeE-
Confidence 999999 99999998878999999999999999999999999 99999999975443 33346889999999999
Q ss_pred ccCCCCCCCCCCCCCCCcccceEEEEcc
Q psy14338 1620 RTSPAGVAGAPVPPGVSKLHDAVFVVGA 1647 (1761)
Q Consensus 1620 ~~~~~d~d~~~~~~g~G~~~~~l~~~GR 1647 (1761)
| | |+ |+|+||
T Consensus 471 -----d-d--------G~----l~~~GR 480 (480)
T 3t5a_A 471 -----T-D--------GK----MFIIGR 480 (480)
T ss_dssp -----E-T--------TE----EEECC-
T ss_pred -----E-C--------CE----EEEeCC
Confidence 7 8 99 999998
No 63
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=6.5e-50 Score=488.09 Aligned_cols=313 Identities=13% Similarity=0.115 Sum_probs=259.8
Q ss_pred CCCcEEEEecCCCCCCceEEEEchHHHHHHHHHHHHHcCCCCCCeEEEccCCcchhhhHHHHHHHHhcCcEEEEeCCccc
Q psy14338 253 DDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFKRETGLWHSVLTSVLNGMHAVYIPYALM 332 (1761)
Q Consensus 253 ~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~i~~~L~~G~~lvi~~~~~~ 332 (1761)
.||+|||+|||||||+||||+++|+++++.+.+....++++++|++++++|++|++|++. ++.+++.|+++++.++
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~-~~~~l~~g~~~~~~~~--- 111 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMM-LVRGMELDWELTVTEP--- 111 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEEECC---
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHH-HHHHHHhCcEEEecCc---
Confidence 478999999999999999999999999999999999999999999999999999999986 9999999999999875
Q ss_pred cCCHHHHHHHHHhcCceEEEecCHHHHHHhhcCCCCCCCCCCceeEEEecCCCccCCHHHHHHHHHHhhhCCCCCCcccc
Q psy14338 333 KVNPASWMQMITKYRASVAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGANPWSLSSCDQFLSVFQSKGLRPDAICP 412 (1761)
Q Consensus 333 ~~~~~~l~~~i~~~~vt~~~~~p~~~~~~ll~~~~~~~~~l~~Lr~v~~gg~Ge~l~~~~~~~~~~~~~~~g~~~~~l~n 412 (1761)
..++ ++.|+++++|++.++| +++..++..... ..++++||.+++| |+++++++.++|.+. |++ ++|
T Consensus 112 ~~~~---~~~i~~~~~t~~~~~P-~~l~~ll~~~~~-~~~l~~lr~v~~g--G~~l~~~~~~~~~~~----~~~---~~~ 177 (358)
T 4gs5_A 112 TANP---LAGLDHADFDFVAMVP-MQLQSILENSAT-SGQVDRLGKVLLG--GAPVNHALAMQISDL----AMP---VYQ 177 (358)
T ss_dssp CSCT---TTTCSSCCCSEEEECH-HHHHHHHHCTTT-GGGGGGGCSEEEC--SSCCCHHHHHHHHTC----SSC---EEE
T ss_pred cccH---HHHHHHhCCeEEEcCh-HHHHHhhccccc-cccCCcceEEEEc--ccCCCchheeccccc----Cce---EEe
Confidence 3333 5678899999999996 588888776543 4578999999999 999999999998764 554 999
Q ss_pred ccccccccceEeecCCCCCcccCCCccccccCcccceeeecCCCccCcccccccCCCCCCcEEEEEeCCCCcccCCCCCc
Q psy14338 413 CASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQVMPGCIMTVVKMDSPSYLCKTDEV 492 (1761)
Q Consensus 413 ~YG~TE~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~I~d~~~~~~~~p~G~~ 492 (1761)
.||+||++..++..+.. ....+.+|.|.||+++.+ ++.
T Consensus 178 ~YG~TEt~~~~~~~~~~------------------------------~~~~g~~~~~~pgv~~~~------------~~~ 215 (358)
T 4gs5_A 178 SYGMTETVSHVALKALN------------------------------GPEASELYVFLPGIQYGV------------DER 215 (358)
T ss_dssp EEECGGGSSEEEEEECS------------------------------STTCCSCEEECTTCEEEE------------CTT
T ss_pred ccccccccceeeccccc------------------------------ccccceeeccCCCeEEEe------------cCc
Confidence 99999998766644321 122456788888877665 334
Q ss_pred eEEEEecCCccccccCCCccccccccccccccCCCccCCCceEeecceEEEeCCCeEEEEeccCCeEEECCcccChHHHH
Q psy14338 493 GEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGFLGPGGLVFVCGSRDGLMTVTGRKHNADDII 572 (1761)
Q Consensus 493 GEL~i~G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rIe~~eIE 572 (1761)
|||+++|+.. .++||||||+|++|+|| ++|+||+|||||++|+||+|.|||
T Consensus 216 Gel~~~g~~~----------------------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE 266 (358)
T 4gs5_A 216 GCLHISGAVT----------------------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQID 266 (358)
T ss_dssp SEEEEESGGG----------------------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHH
T ss_pred CceEEecccc----------------------------cCcceecCCccccccCc-eEEcccccCeEEECCEEECHHHHH
Confidence 8888887521 27899999999999888 778899999999999999999999
Q ss_pred HHHH---hcCCccccccceEEEE-EEec-CCCceEEEEEEeCCC-CCHHHHHHHHHHHHHHhhhcceeeeeEEEEeCCCC
Q psy14338 573 ATVL---AVEPMKFIYRGRIAVF-SIRV-LRDERICVIAEQRPD-CSEEESFQWMSRVLQAVDSIHQVGLYCLALVPPNY 646 (1761)
Q Consensus 573 ~~l~---~~~~v~~~~~~~a~v~-~~~~-~~~~~l~a~v~~~~~-~~~~~l~~~l~~~Lp~y~~P~~i~~~~v~~v~~~~ 646 (1761)
+.|. .++.| .+|+|+ +.++ ..++.++|+++.... ...++++++|+++||.||+|+.| +.+++
T Consensus 267 ~~l~~~~~~p~V-----~~a~vv~~~~d~~~ge~~~a~v~~~~~~~~~~~l~~~l~~~L~~~~~P~~i-------~~v~~ 334 (358)
T 4gs5_A 267 QRIAAVFHHLNI-----GNAFFCWWEPDAKLGQKLVLVIENAMPEALTERLTAEIRSRVSTYENPKHI-------YFAKA 334 (358)
T ss_dssp HHHHHHHHHHTC-----CCCEEEEEEEETTTEEEEEEEEESCCCHHHHHHHHHHHHHHSCGGGSCSCE-------EEESS
T ss_pred HHHHHhccCCCc-----cEEEEEEecCCccCCEEEEEEEECCCCCcCHHHHHHHHHhhCCCCCCceEE-------EEECC
Confidence 8764 46677 466555 5665 467889999887654 45678999999999999999987 44599
Q ss_pred ccCCCCCcccHHHHHHHHHc
Q psy14338 647 LPKTPLGGIHLSECKRRFLE 666 (1761)
Q Consensus 647 lP~t~~GKidR~~L~~~~~~ 666 (1761)
||+|+||||||++|++.+.+
T Consensus 335 lP~t~~GKi~R~~L~~~l~e 354 (358)
T 4gs5_A 335 FAKTQTDKIDKRATFQKLSD 354 (358)
T ss_dssp CCBCTTSCBCHHHHHHHTC-
T ss_pred cCCCCCCChhHHHHHHHhhh
Confidence 99999999999999998754
No 64
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=1.1e-47 Score=468.57 Aligned_cols=310 Identities=14% Similarity=0.083 Sum_probs=257.9
Q ss_pred CCCEEEEEeccCCCCCCceEEccHHHHHHHHHHHHHHcCcCCCCeEEEEeCCccChhHHHHHHHHhhcCceEEEeCCCcc
Q psy14338 1328 AEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEV 1407 (1761)
Q Consensus 1328 ~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~L~~G~~~vl~~~~~~ 1407 (1761)
.+++|||+|||||||+||||+++|+++.+.+.+....++++++|++++++|++|++|+ ..++.+++.|+++++.++.
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl-~~~~~~l~~g~~~~~~~~~-- 112 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGL-MMLVRGMELDWELTVTEPT-- 112 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEEECCC--
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHH-HHHHHHHHhCcEEEecCcc--
Confidence 4789999999999999999999999999999999999999999999999999998887 5688999999999998752
Q ss_pred ccCHHHHHHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCCCCCcceEEEeecCCCChHHHHHHHHHHHhhCCCCC
Q psy14338 1408 EVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALGLSP 1487 (1761)
Q Consensus 1408 ~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~~l~~Lr~v~~gGe~l~~~~l~~~~~~~~~~~g~~e 1487 (1761)
.+ +++.|+++++|+++++|+++..+++.. ....++++||.+++|||++++ .+.+++.+ .|
T Consensus 113 -~~---~~~~i~~~~~t~~~~~P~~l~~ll~~~--------~~~~~l~~lr~v~~gG~~l~~-~~~~~~~~----~~--- 172 (358)
T 4gs5_A 113 -AN---PLAGLDHADFDFVAMVPMQLQSILENS--------ATSGQVDRLGKVLLGGAPVNH-ALAMQISD----LA--- 172 (358)
T ss_dssp -SC---TTTTCSSCCCSEEEECHHHHHHHHHCT--------TTGGGGGGGCSEEECSSCCCH-HHHHHHHT----CS---
T ss_pred -cc---HHHHHHHhCCeEEEcChHHHHHhhccc--------cccccCCcceEEEEcccCCCc-hheecccc----cC---
Confidence 33 356789999999999999999997742 234468899999999999999 77776654 33
Q ss_pred ccccccccccccceeeecCCCCCCCceeEecccccccCcceecccCCCCccceeccccccCCcEEEEEcCCCCCCCCCCc
Q psy14338 1488 RAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLPGVKVIIANPETKGQCGDSH 1567 (1761)
Q Consensus 1488 ~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~~~p~G~ 1567 (1761)
..+++.||+||++..+..... ..+ ..+++|.|.||+++.+.+
T Consensus 173 ~~~~~~YG~TEt~~~~~~~~~----------------------~~~-----~~g~~~~~~pgv~~~~~~----------- 214 (358)
T 4gs5_A 173 MPVYQSYGMTETVSHVALKAL----------------------NGP-----EASELYVFLPGIQYGVDE----------- 214 (358)
T ss_dssp SCEEEEEECGGGSSEEEEEEC----------------------SST-----TCCSCEEECTTCEEEECT-----------
T ss_pred ceEEeccccccccceeecccc----------------------ccc-----ccceeeccCCCeEEEecC-----------
Confidence 579999999998654332110 011 123489999999888743
Q ss_pred ceEEEEcCCcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEeccCCCCCCCCCCCCCCCcccceEEEEcc
Q psy14338 1568 LGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDAVFVVGA 1647 (1761)
Q Consensus 1568 ~GEL~i~g~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~~~~~d~d~~~~~~g~G~~~~~l~~~GR 1647 (1761)
.|||+++|+. . .+|||||||+|++ |+| | ++|+||
T Consensus 215 ~Gel~~~g~~------~---------------------~~g~~~TGDlg~~------d~~--------g-----~~~~GR 248 (358)
T 4gs5_A 215 RGCLHISGAV------T---------------------NGQTVQTNDLVEI------HGN--------A-----FQWIGR 248 (358)
T ss_dssp TSEEEEESGG------G---------------------TTCCEEEEEEEEE------CSS--------E-----EEEEEE
T ss_pred cCceEEeccc------c---------------------cCcceecCCcccc------ccC--------c-----eEEccc
Confidence 3999998752 1 3689999999999 887 7 667899
Q ss_pred cCCeEEeCCeecChHHHHHHHH---HhccCcceeEEEe-e-----CCeEEEEEEeCCCchhHhhHHHHHHHHHhhhcCce
Q psy14338 1648 LDETIMLRGMRYHPIDIENSVM---RAHKKIAECAVFT-W-----TNLLVVVVELDGNESEALDLVPLVTNAVLEEHHLI 1718 (1761)
Q Consensus 1648 ~dd~Iki~G~rI~~~eIE~~~l---~~~p~V~~a~Vv~-~-----~~~~~a~v~~~~~~~~~~~l~~~l~~~~Lp~~~~v 1718 (1761)
+|||||++|+||+|.|||+ +| ..||+|.+|+|+. . ++.++++|+........++|+++|+++ || .||+
T Consensus 249 ~dd~Ik~~G~~v~p~eIE~-~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~~~~~~l~~~l~~~-L~-~~~~ 325 (358)
T 4gs5_A 249 ADNVINSGGVKIVLDQIDQ-RIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPEALTERLTAEIRSR-VS-TYEN 325 (358)
T ss_dssp GGGEEEETTEEEEHHHHHH-HHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCHHHHHHHHHHHHHH-SC-GGGS
T ss_pred ccCeEEECCEEECHHHHHH-HHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCCCcCHHHHHHHHHhh-CC-CCCC
Confidence 9999999999999999998 55 4689999998874 2 357888888776677788999999997 98 9999
Q ss_pred eeEEEEECCCCccCCCchhhhHHHHHHHHHc
Q psy14338 1719 VGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 1749 (1761)
Q Consensus 1719 P~~i~~v~~~~lP~t~~GKvdR~~L~~~~~~ 1749 (1761)
|+.|++++ +||+|+||||||++|++.+.+
T Consensus 326 P~~i~~v~--~lP~t~~GKi~R~~L~~~l~e 354 (358)
T 4gs5_A 326 PKHIYFAK--AFAKTQTDKIDKRATFQKLSD 354 (358)
T ss_dssp CSCEEEES--SCCBCTTSCBCHHHHHHHTC-
T ss_pred ceEEEEEC--CcCCCCCCChhHHHHHHHhhh
Confidence 99999999 999999999999999998744
No 65
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=6.8e-46 Score=469.24 Aligned_cols=400 Identities=13% Similarity=0.118 Sum_probs=293.0
Q ss_pred CeEEecCCCCCcCcc-----------chhHHHHHHhcCCCcEEEEcccccccCcccccccceeccCCCcceeEEeccccC
Q psy14338 172 IVPVPIEVPLTRRDA-----------GSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKLTWFVTEHLAK 240 (1761)
Q Consensus 172 ~~~vpldp~~p~~~~-----------~~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1761)
.+++|++|.++.++. ..+|++++++.+..+..+..+...+. ......+..+.++..+.....+.+..
T Consensus 3 ~~~~p~~p~~~~~~~~~~~~~~~~~~q~~~l~~~l~~a~~~~~~y~~~~~~~--~~~~~~i~~~~dl~~lP~~~~~~l~~ 80 (443)
T 2y4o_A 3 HMTHPTHPAAALEPIETASRDELQALQLERLKWSLRHAYDNVPHYRRTFDAA--GVHPDDLKSLADLAKFPFSTKNDLRD 80 (443)
T ss_dssp ------CCTTSCCGGGGCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH--TCCGGGCCSGGGGGGSCCBCHHHHHT
T ss_pred CcCCCCCccccCcccccCCHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHc--CCChhhCCCHHHHHHCCCCcHHHHHh
Confidence 468999999985531 22467888887766665554432211 00000010111111111111122211
Q ss_pred CCCCCCCCCCCCCCCcEEEEecCCCCCCceEEEEchHHHHHHHHHHHH---HcCCCCCCeEEEccCCc-chhhhHHHHHH
Q psy14338 241 TPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQ---ACHYTEGENMVCVLDFK-RETGLWHSVLT 316 (1761)
Q Consensus 241 ~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~~~~-~~~~~~~~i~~ 316 (1761)
..+ .......+++++||+|||||||+||||+++|+++.+.+.+... .++++++|++++++|+. |..++. .++.
T Consensus 81 ~~p--~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~~~ 157 (443)
T 2y4o_A 81 NYP--FGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLG-IHYG 157 (443)
T ss_dssp TTT--TTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHH-HHHH
T ss_pred hCC--CcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHH-HHHH
Confidence 111 1123457799999999999999999999999999877655443 67899999999999994 666666 4899
Q ss_pred HHhcCcEEEEeCCccccCCHHHHHHHHHhcCceEEEecCHHHHHHhhcCCCCCCC--CCCceeEEEecCCCccCCHHHHH
Q psy14338 317 SVLNGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKDHKDI--SLSSLRLLLVGDGANPWSLSSCD 394 (1761)
Q Consensus 317 ~L~~G~~lvi~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~~ll~~~~~~~~--~l~~Lr~v~~gg~Ge~l~~~~~~ 394 (1761)
++..|+++++.+ .+++..+++.|+++++|+++++| +++..++........ .+++||.+++| ||++++++.+
T Consensus 158 ~~~~G~~~~~~~----~~~~~~~~~~i~~~~~t~l~~~P-s~~~~l~~~~~~~~~~~~~~~lr~i~~g--Ge~l~~~~~~ 230 (443)
T 2y4o_A 158 AERLGCMVVPMS----GGQTEKQVQLIRDFEPKIILVTP-SYMLNLIDEMVRQGMDPAESSLKIGIFG--AEPWTQALRN 230 (443)
T ss_dssp HHHHTCEEECCC----SCCHHHHHHHHHHHCCSEEEECH-HHHHHHHHHHHHTTCCGGGSSCCEEEEE--SSCCCHHHHH
T ss_pred HHHcCCEEEECC----CCCHHHHHHHHHHhCCcEEEECH-HHHHHHHHHHHHcCCCcccCCceEEEEC--CCcCCHHHHH
Confidence 999999999887 56899999999999999999996 477777654222222 24799999999 9999999999
Q ss_pred HHHHHhhhCCCCCCccccccccccccc--eEeecCCCCCcccCCCccccccCcccceeeecCCCccCcccccccCCCCCC
Q psy14338 395 QFLSVFQSKGLRPDAICPCASSSECLT--VSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQVMPG 472 (1761)
Q Consensus 395 ~~~~~~~~~g~~~~~l~n~YG~TE~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~ 472 (1761)
+|.+.+ |++ ++|.||+||++. ++...+. .....+.|.++
T Consensus 231 ~~~~~~---g~~---v~~~YG~TE~~g~~~~~~~~~---------------------------------~~~g~~~~~~~ 271 (443)
T 2y4o_A 231 EVETRV---GID---ALDIYGLSEVMGPGVACECVE---------------------------------TKDGPVIWEDH 271 (443)
T ss_dssp HHHHHH---TCE---EEEEEEETTTTEEEEEEECTT---------------------------------TCCSEEECTTT
T ss_pred HHHHHh---CcC---EEeccCchhhcCCeEEeccCC---------------------------------CCCceEEccCC
Confidence 999988 553 999999999853 2221110 01014446789
Q ss_pred cEEEEEeCC-CCcccCCCCCceEEEEecCCccccccCCCccccccccccccccCCCccCCCceEeecceEEEeCC-CeE-
Q psy14338 473 CIMTVVKMD-SPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGFLGPG-GLV- 549 (1761)
Q Consensus 473 ~~~~I~d~~-~~~~~~p~G~~GEL~i~G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~~~~d-G~l- 549 (1761)
+.++|+|++ ++ ++|.|+.|||+|+| +|++.|. .+||||||+|++++| |.+
T Consensus 272 ~~~~i~d~~~g~--~~~~G~~Gel~v~~------------~t~~~~p-------------~~~y~TGDl~~~~~~cG~~~ 324 (443)
T 2y4o_A 272 FYPEIIDPVTGE--VLPDGSQGELVFTS------------LTKEAMP-------------VIRYRTRDLTALLPPTARAM 324 (443)
T ss_dssp EEEEEECTTTCC--BCCTTCCEEEEEEE------------SSCSSSC-------------CSSEEEEEEECEECCSSSSS
T ss_pred eEEEEEcCCCCC--CCCCCCceEEEEeC------------CCcccCh-------------hheeecCCEEEEcCCCCCCc
Confidence 999999965 65 69999999999998 3555562 689999999999999 997
Q ss_pred ----EEEeccCCeEEECCcccChHHHHHHHHhcCCccccccceEEEEEEec-CCCceEEEEEEeCC--C-----CCHHHH
Q psy14338 550 ----FVCGSRDGLMTVTGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIRV-LRDERICVIAEQRP--D-----CSEEES 617 (1761)
Q Consensus 550 ----~~~GR~d~qvki~G~rIe~~eIE~~l~~~~~v~~~~~~~a~v~~~~~-~~~~~l~a~v~~~~--~-----~~~~~l 617 (1761)
+|+||+||+||++|+||+|.|||++|.+++.| .+++|+++++ ..++.++++++..+ + .+.+++
T Consensus 325 ~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V-----~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~l 399 (443)
T 2y4o_A 325 RRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLL-----SGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAAL 399 (443)
T ss_dssp CEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTE-----EEEEEEEEEEETTEEEEEEEEEECHHHHTTCCHHHHHHH
T ss_pred cccCccccccCCeEEECCEEECHHHHHHHHHhCcCc-----CccEEEEEecCCCCceEEEEEEECCcccccchhhHHHHH
Confidence 89999999999999999999999999998887 6888888774 35678999998865 2 345789
Q ss_pred HHHHHHHHHHhh-hcceeeeeEEEEeCCCCccCCCCCcccHHH
Q psy14338 618 FQWMSRVLQAVD-SIHQVGLYCLALVPPNYLPKTPLGGIHLSE 659 (1761)
Q Consensus 618 ~~~l~~~Lp~y~-~P~~i~~~~v~~v~~~~lP~t~~GKidR~~ 659 (1761)
+++|+++|+.|| +|..+ .|+.+++||+|+|||++|+.
T Consensus 400 ~~~l~~~l~~~~~~p~~v-----~~v~~~~lP~t~~GKi~r~~ 437 (443)
T 2y4o_A 400 ARELQHRIKTMVGVSSGV-----TVLAAGGIPATATGKARRVI 437 (443)
T ss_dssp HHHHHHHHHHHTCCCCEE-----EEECTTCSCCCTTSCCCSEE
T ss_pred HHHHHHHHHHHhCCceEE-----EEeCCCcccCccCCcceEEE
Confidence 999999999996 88765 57777899999999999974
No 66
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=9.5e-45 Score=457.76 Aligned_cols=325 Identities=13% Similarity=0.107 Sum_probs=261.5
Q ss_pred CCCC-CCcEEEEecCCCCCCceEEEEchHHHHHHHHHHH---HHcCCCCCCeEEEccCCcchhhhHHHHHHHHhcCcEEE
Q psy14338 250 RLTD-DTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALT---QACHYTEGENMVCVLDFKRETGLWHSVLTSVLNGMHAV 325 (1761)
Q Consensus 250 ~~~~-~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~~~~~~~~~~~~i~~~L~~G~~lv 325 (1761)
...+ ++++||+|||||||+||||+++|+++.+.+.+.. ..++++++|++++++|+.|..+.+..++.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 3456 8999999999999999999999999988776653 34589999999999999765555545889999999999
Q ss_pred EeCCccccCCHHHHHHHHHhcCceEEEecCHHHHHHhhcCCCCCCC--CCCceeEEEecCCCccCCHHHHHHHHHHhhhC
Q psy14338 326 YIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKDHKDI--SLSSLRLLLVGDGANPWSLSSCDQFLSVFQSK 403 (1761)
Q Consensus 326 i~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~~ll~~~~~~~~--~l~~Lr~v~~gg~Ge~l~~~~~~~~~~~~~~~ 403 (1761)
+.+ ..++..+++.|+++++|+++++| +++..++........ .+++||.+++| ||++++++.++|.+.+
T Consensus 161 ~~~----~~~~~~~~~~i~~~~~t~~~~~P-~~~~~l~~~~~~~~~~~~~~~lr~i~~g--Ge~l~~~~~~~~~~~~--- 230 (436)
T 3qov_A 161 PAA----AGNSKRQIKFISDFKTTALHAIP-SYAIRLAEVFQEEGIDPRETTLKTLVIG--AEPHTDEQRRKIERML--- 230 (436)
T ss_dssp CCC----SCCHHHHHHHHHHHTCCEEECCH-HHHHHHHHHHHHTTCCTTSSSCCEEEEE--SSCCCHHHHHHHHHHH---
T ss_pred eCC----CCCHHHHHHHHHHHCCCEEEECH-HHHHHHHHHHHHcCCCcccCCccEEEEe--CCcCCHHHHHHHHHHh---
Confidence 987 56899999999999999999996 477777664322222 37899999999 9999999999999998
Q ss_pred CCCCCccccccccccccceEeecCCCCCcccCCCccccccCcccceeeecCCCccCcccccccCCCCCCcEEEEEe-CCC
Q psy14338 404 GLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQVMPGCIMTVVK-MDS 482 (1761)
Q Consensus 404 g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~I~d-~~~ 482 (1761)
|++ ++|.||+||++..++..... ....+|.|.+++.++|+| +++
T Consensus 231 g~~---v~~~YG~TE~~~~~~~~~~~--------------------------------~~~g~~~~~~~~~v~i~d~~~g 275 (436)
T 3qov_A 231 NVK---AYNSFGMTEMNGPGVAFECQ--------------------------------EQNGMHFWEDCYLVEIIDPETG 275 (436)
T ss_dssp TSE---EEEEEEEGGGTEEEEEEECT--------------------------------TCSSEEECTTTEEEEEECTTTC
T ss_pred Ccc---EEecCcchhhcCCeeEEecC--------------------------------CCCeeEEccCceEEEEEECCCC
Confidence 553 99999999996442211100 012366778899999999 556
Q ss_pred CcccCCCCCceEEEEecCCccccccCCCccccccccccccccCCCccCCCceEeecceEEEeCCC------e---EEEEe
Q psy14338 483 PSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGFLGPGG------L---VFVCG 553 (1761)
Q Consensus 483 ~~~~~p~G~~GEL~i~G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~~~~dG------~---l~~~G 553 (1761)
+ ++|.|+.|||+|+| .|++.|. .+||||||+|++++|| + ++|+|
T Consensus 276 ~--~~~~g~~Gel~v~~------------~~~~~~~-------------~~~y~TGDl~~~~~~gc~cG~~~~~il~i~G 328 (436)
T 3qov_A 276 E--PVPEGEIGELVLTT------------LDREMMP-------------LIRYRTRDLTRILPGKCPCGRTHLRIDRIKG 328 (436)
T ss_dssp S--BCSTTCCEEEEEEE------------SSCCSSC-------------CCSEEEEEEECEECSCCTTCCCSCEECCCCC
T ss_pred C--CCCCCCceEEEEec------------cCcCCce-------------EEEEEcCCEEEEcCCCCCCCCCccccCcccC
Confidence 5 69999999999998 3455552 7899999999999998 5 69999
Q ss_pred ccCCeEEECCcccChHHHHHHHHhcCCccccccceEEEEEEec-CCCceEEEEEEeCCCC--C----HHHHHHHHHHHHH
Q psy14338 554 SRDGLMTVTGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIRV-LRDERICVIAEQRPDC--S----EEESFQWMSRVLQ 626 (1761)
Q Consensus 554 R~d~qvki~G~rIe~~eIE~~l~~~~~v~~~~~~~a~v~~~~~-~~~~~l~a~v~~~~~~--~----~~~l~~~l~~~Lp 626 (1761)
|+||+||++|+||+|.|||++|.+++.| .+++|++.++ ..++.++++|++. +. + .+++++++++.|+
T Consensus 329 R~dd~ik~~G~~v~p~eiE~~l~~~p~v-----~~~~vv~~~~~~~~~~l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~ 402 (436)
T 3qov_A 329 RSDDMFIIKGVNIFPMQVEKILVQFPEL-----GSNYLITLETVNNQDEMIVEVELS-DLSTDNYIELEKIRRDIIRQLK 402 (436)
T ss_dssp BSSSCEEETTEEECHHHHHHHHTTCTTE-----EEEEEEEEEEETTEEEEEEEEEEC-TTCCCCHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEECCEEECHHHHHHHHHhCcCc-----CCcEEEEEEcCCCCcEEEEEEEEc-CccccchhhHHHHHHHHHHHHH
Confidence 9999999999999999999999998888 6888888874 4678899999988 43 2 5789999999999
Q ss_pred Hh-hhcceeeeeEEEEeCCCCccCCCCCcccHH
Q psy14338 627 AV-DSIHQVGLYCLALVPPNYLPKTPLGGIHLS 658 (1761)
Q Consensus 627 ~y-~~P~~i~~~~v~~v~~~~lP~t~~GKidR~ 658 (1761)
.| ++|..+ .|+..++||+|+ ||++|.
T Consensus 403 ~~~~~p~~i-----~~v~~~~lP~t~-GKi~R~ 429 (436)
T 3qov_A 403 DEILVTPKV-----KLVKKGSLPQSE-GKAVRV 429 (436)
T ss_dssp HHHSSCCEE-----EEECTTCCC--------CE
T ss_pred HhcCCceEE-----EEeCCCcccCcC-CcceEE
Confidence 99 899876 567666999999 999986
No 67
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=1.1e-44 Score=457.38 Aligned_cols=326 Identities=15% Similarity=0.160 Sum_probs=266.2
Q ss_pred CCCCCCcEEEEecCCCCCCceEEEEchHHHHHHHHHHH---HHcCCCCCCeEEEccCC-cchhhhHHHHHHHHhcCcEEE
Q psy14338 250 RLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALT---QACHYTEGENMVCVLDF-KRETGLWHSVLTSVLNGMHAV 325 (1761)
Q Consensus 250 ~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~~~-~~~~~~~~~i~~~L~~G~~lv 325 (1761)
...+++++||+|||||||+||||+++|+++.+.+.+.. ..++++++|++++++|+ .|..++.. ++.++..|++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~G~~~~ 164 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGA-HYGAERAGLTVI 164 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHH-HHHHHHTTCEEE
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHH-HHHHHHcCCEEE
Confidence 45679999999999999999999999999987765443 36789999999999999 57777764 899999999999
Q ss_pred EeCCccccCCHHHHHHHHHhcCceEEEecCHHHHHHhhcCCCCCCC--CCCceeEEEecCCCccCCHHHHHHHHHHhhhC
Q psy14338 326 YIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKDHKDI--SLSSLRLLLVGDGANPWSLSSCDQFLSVFQSK 403 (1761)
Q Consensus 326 i~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~~ll~~~~~~~~--~l~~Lr~v~~gg~Ge~l~~~~~~~~~~~~~~~ 403 (1761)
+.+ .+++..+++.|+++++|+++++| +++..++........ .+++||.+++| |+++++++.++|.+.+
T Consensus 165 ~~~----~~~~~~~~~~i~~~~~t~l~~~P-s~~~~l~~~~~~~~~~~~~~~lr~i~~g--Ge~l~~~~~~~~~~~~--- 234 (437)
T 2y27_A 165 PFG----GGQTEKQVQLIQDFRPDIIMVTP-SYMLSIADEIERQGLDPVQSSLRIGIFG--AEPWTNDMRVAIEQRM--- 234 (437)
T ss_dssp CCC----SCCHHHHHHHHHHHCCSEEEECH-HHHHHHHHHHHHTTCCGGGSSCCEEEEE--SSCCCHHHHHHHHHHH---
T ss_pred eCC----CCCHHHHHHHHHHhCCCEEEECH-HHHHHHHHHHHHcCCCcccCCeeEEEEc--CccCCHHHHHHHHHHH---
Confidence 877 56899999999999999999996 477777654321122 24799999999 9999999999999888
Q ss_pred CCCCCccccccccccccce-EeecCCCCCcccCCCccccccCcccceeeecCCCccCcccccccCCCCCCcEEEEEeCC-
Q psy14338 404 GLRPDAICPCASSSECLTV-SVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQVMPGCIMTVVKMD- 481 (1761)
Q Consensus 404 g~~~~~l~n~YG~TE~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~I~d~~- 481 (1761)
|++ ++|.||+||++.. ....... ....+|.|.+++.++|+|++
T Consensus 235 g~~---v~~~YG~TE~~g~~~~~~~~~--------------------------------~~~g~~~~~~~~~~~i~d~~~ 279 (437)
T 2y27_A 235 GID---AVDIYGLSEVMGPGVASECVE--------------------------------TKDGPTIWEDHFYPEIIDPET 279 (437)
T ss_dssp TSE---EEEEEEETTTTEEEEEECCTT--------------------------------TCSSCEECTTTEEEEEECTTT
T ss_pred CcC---EEecCCchhhcCCeeEEecCC--------------------------------CCCceeEccCceEEEEEcCCC
Confidence 553 9999999998432 2221100 01124557789999999975
Q ss_pred CCcccCCCCCceEEEEecCCccccccCCCccccccccccccccCCCccCCCceEeecceEEEeC-CCeE-----EEEecc
Q psy14338 482 SPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGFLGP-GGLV-----FVCGSR 555 (1761)
Q Consensus 482 ~~~~~~p~G~~GEL~i~G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~~~~-dG~l-----~~~GR~ 555 (1761)
++ ++|.|+.|||+|+| +|+++|. .+||||||+|++++ ||++ +|+||+
T Consensus 280 g~--~~~~g~~Gel~v~~------------~t~~~~~-------------~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~ 332 (437)
T 2y27_A 280 GE--VLPDGELGELVFTS------------LTKEALP-------------IIRYRTRDLTRLLPGTARTMRRMEKITGRS 332 (437)
T ss_dssp CC--BCCTTCCEEEEEEE------------SSCSSSC-------------CCSEEEEEEECEECCSSSSSCEECCCCEEG
T ss_pred CC--CCCCCCccEEEEec------------CCcCCch-------------hheeecCCEEEEeCCCCCCccccCcccccc
Confidence 54 69999999999998 3555662 68999999999999 6996 999999
Q ss_pred CCeEEECCcccChHHHHHHHHhcCCccccccceEEEEEEec-CCCceEEEEEEeCCCC-----CHHHHHHHHHHHHHHhh
Q psy14338 556 DGLMTVTGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIRV-LRDERICVIAEQRPDC-----SEEESFQWMSRVLQAVD 629 (1761)
Q Consensus 556 d~qvki~G~rIe~~eIE~~l~~~~~v~~~~~~~a~v~~~~~-~~~~~l~a~v~~~~~~-----~~~~l~~~l~~~Lp~y~ 629 (1761)
||+||++|++|+|.|||++|.+++.| .+++|+++++ ..++.++++|++.++. +.++++++|+++|+.|+
T Consensus 333 ~d~i~~~G~~v~p~eiE~~l~~~p~V-----~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 407 (437)
T 2y27_A 333 DDMMIVRGVNVFPTQIEEQLLKQRAL-----APHYQIVLTKEGPLDVLTLNVEPCPETAPDTAAIQVAKQALAYDIKSLI 407 (437)
T ss_dssp GGCEEETTEEECHHHHHHHHTTCTTB-----CSCCEEEEEEETTEEEEEEEECBCTTTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEECCeEECHHHHHHHHHhCcCc-----CccEEEEEeecCCCceEEEEEEECCCccchhhhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998887 5788887774 4578899999987653 34789999999999996
Q ss_pred -hcceeeeeEEEEeCCCCccCCCCCcccHHH
Q psy14338 630 -SIHQVGLYCLALVPPNYLPKTPLGGIHLSE 659 (1761)
Q Consensus 630 -~P~~i~~~~v~~v~~~~lP~t~~GKidR~~ 659 (1761)
+|..+ .|+.+++||+|+ ||++|+.
T Consensus 408 ~~p~~v-----~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 408 GVTAVI-----NVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp CCCEEE-----EECCTTCSCCCS-SSCCCEE
T ss_pred CCceEE-----EEeCCCCccCCC-CcceEEE
Confidence 88775 466668999999 9999974
No 68
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=2.5e-43 Score=444.78 Aligned_cols=333 Identities=14% Similarity=0.118 Sum_probs=264.1
Q ss_pred CCC-CCEEEEEeccCCCCCCceEEccHHHHHHHHHHHH---HHcCcCCCCeEEEEeCCccChhHHHHHHHHhhcCceEEE
Q psy14338 1326 PTA-EMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMK---LACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSIL 1401 (1761)
Q Consensus 1326 ~~~-~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~L~~G~~~vl 1401 (1761)
..+ ++++||+|||||||.||||+++|+++.+.+.... ..+++.++|+++..+++.|+.+.+..++.++..|+++++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 161 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP 161 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence 455 8899999999999999999999999988776654 345889999999888887777776778889999999998
Q ss_pred eCCCccccCHHHHHHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCCCCCcceEEEeecCCCChHHHHHHHHHHHh
Q psy14338 1402 IPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFS 1481 (1761)
Q Consensus 1402 ~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~~l~~Lr~v~~gGe~l~~~~l~~~~~~~~~ 1481 (1761)
.+. +++..+++.|+++++|+++++|+++..|++.... ......+++||.+++|||++++ ++.+++.+.|+
T Consensus 162 ~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----~~~~~~~~~lr~i~~gGe~l~~-~~~~~~~~~~g 231 (436)
T 3qov_A 162 AAA----GNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQE-----EGIDPRETTLKTLVIGAEPHTD-EQRRKIERMLN 231 (436)
T ss_dssp CCS----CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHH-----TTCCTTSSSCCEEEEESSCCCH-HHHHHHHHHHT
T ss_pred CCC----CCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHH-----cCCCcccCCccEEEEeCCcCCH-HHHHHHHHHhC
Confidence 874 5899999999999999999999999999875321 1112237899999999999999 88888988873
Q ss_pred hCCCCCccccccccccccceeeecCCCCCCCceeEecccccccCcceecccCCCCccceeccccccCCcEEEEEcCCCCC
Q psy14338 1482 ALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLPGVKVIIANPETKG 1561 (1761)
Q Consensus 1482 ~~g~~e~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~ 1561 (1761)
..+++.||+||+++.++.... . . . ..+|.|.+++.++|+|+++++
T Consensus 232 ------~~v~~~YG~TE~~~~~~~~~~-~----------------------~-~-----~g~~~~~~~~~v~i~d~~~g~ 276 (436)
T 3qov_A 232 ------VKAYNSFGMTEMNGPGVAFEC-Q----------------------E-Q-----NGMHFWEDCYLVEIIDPETGE 276 (436)
T ss_dssp ------SEEEEEEEEGGGTEEEEEEEC-T----------------------T-C-----SSEEECTTTEEEEEECTTTCS
T ss_pred ------ccEEecCcchhhcCCeeEEec-C----------------------C-C-----CeeEEccCceEEEEEECCCCC
Confidence 579999999998543211000 0 0 0 115777889999999988899
Q ss_pred CCCCCcceEEEEcCCcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEeccCCCCCCCCCCCCCCCcccce
Q psy14338 1562 QCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDA 1641 (1761)
Q Consensus 1562 ~~p~G~~GEL~i~g~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~~~~~d~d~~~~~~g~G~~~~~ 1641 (1761)
++|.|+.|||+|+|.. ++.| ..+||+|||+|++ ++|| |+||+++ +.
T Consensus 277 ~~~~g~~Gel~v~~~~---------------~~~~---------~~~~y~TGDl~~~------~~~g--c~cG~~~--~~ 322 (436)
T 3qov_A 277 PVPEGEIGELVLTTLD---------------REMM---------PLIRYRTRDLTRI------LPGK--CPCGRTH--LR 322 (436)
T ss_dssp BCSTTCCEEEEEEESS---------------CCSS---------CCCSEEEEEEECE------ECSC--CTTCCCS--CE
T ss_pred CCCCCCceEEEEeccC---------------cCCc---------eEEEEEcCCEEEE------cCCC--CCCCCCc--cc
Confidence 9999999999999832 1223 3679999999999 7874 7776632 22
Q ss_pred E-EEEcccCCeEEeCCeecChHHHHHHHHHhccCcceeEEEee-----CCeEEEEEEeCCCch----hHhhHHHHHHHHH
Q psy14338 1642 V-FVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELDGNES----EALDLVPLVTNAV 1711 (1761)
Q Consensus 1642 l-~~~GR~dd~Iki~G~rI~~~eIE~~~l~~~p~V~~a~Vv~~-----~~~~~a~v~~~~~~~----~~~~l~~~l~~~~ 1711 (1761)
+ +|+||+||+||++|+||+|.|||+ +|.+||+|.+++|++. ++.++++|+..+... +.++++++|+++
T Consensus 323 il~i~GR~dd~ik~~G~~v~p~eiE~-~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~- 400 (436)
T 3qov_A 323 IDRIKGRSDDMFIIKGVNIFPMQVEK-ILVQFPELGSNYLITLETVNNQDEMIVEVELSDLSTDNYIELEKIRRDIIRQ- 400 (436)
T ss_dssp ECCCCCBSSSCEEETTEEECHHHHHH-HHTTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHH-
T ss_pred cCcccCccCCEEEECCEEECHHHHHH-HHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEcCccccchhhHHHHHHHHHHH-
Confidence 4 899999999999999999999999 8999999999998874 347888888763222 257899999987
Q ss_pred hhhcC-ceeeEEEEECCCCccCCCchhhhHH
Q psy14338 1712 LEEHH-LIVGVAVVVDPGVVPINSRGEKQRM 1741 (1761)
Q Consensus 1712 Lp~~~-~vP~~i~~v~~~~lP~t~~GKvdR~ 1741 (1761)
|+ .| ++|..+.+++.++||+|+ ||++|.
T Consensus 401 l~-~~~~~p~~i~~v~~~~lP~t~-GKi~R~ 429 (436)
T 3qov_A 401 LK-DEILVTPKVKLVKKGSLPQSE-GKAVRV 429 (436)
T ss_dssp HH-HHHSSCCEEEEECTTCCC--------CE
T ss_pred HH-HhcCCceEEEEeCCCcccCcC-CcceEE
Confidence 88 66 999999999888999999 999985
No 69
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=1.7e-43 Score=447.29 Aligned_cols=332 Identities=14% Similarity=0.100 Sum_probs=262.6
Q ss_pred CCCCCCEEEEEeccCCCCCCceEEccHHHHHHHHHHHHH---HcCcCCCCeEEEEeCCccChhHHHHHHHHhhcCceEEE
Q psy14338 1325 APTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKL---ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSIL 1401 (1761)
Q Consensus 1325 ~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~L~~G~~~vl 1401 (1761)
...+++++||+|||||||+||||+++|+++.+.+..... .+++.++|+++..+++.++.+....++.++..|+++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 356789999999999999999999999999887655443 67889999998888876565555667889999999998
Q ss_pred eCCCccccCHHHHHHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCC--CCCcceEEEeecCCCChHHHHHHHHHH
Q psy14338 1402 IPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNI--ALGCVRTCVVVAEERPRIHLTSAFSKL 1479 (1761)
Q Consensus 1402 ~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~--~l~~Lr~v~~gGe~l~~~~l~~~~~~~ 1479 (1761)
.+. +++..+++.|+++++|+++++|+++..|++... .... .+++||.+++|||++++ .+.+++.+.
T Consensus 168 ~~~----~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~-------~~~~~~~~~~lr~i~~gGe~l~~-~~~~~~~~~ 235 (443)
T 2y4o_A 168 MSG----GQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMV-------RQGMDPAESSLKIGIFGAEPWTQ-ALRNEVETR 235 (443)
T ss_dssp CCS----CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH-------HTTCCGGGSSCCEEEEESSCCCH-HHHHHHHHH
T ss_pred CCC----CCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHH-------HcCCCcccCCceEEEECCCcCCH-HHHHHHHHH
Confidence 874 589999999999999999999999999977431 1222 24789999999999999 888888887
Q ss_pred HhhCCCCCcccccccccccccee-eecCCCCCCCceeEecccccccCcceecccCCCCccceeccccccCCcEEEEEcCC
Q psy14338 1480 FSALGLSPRAVSTSFGCRVNIAI-CLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLPGVKVIIANPE 1558 (1761)
Q Consensus 1480 ~~~~g~~e~~i~~~yG~tE~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~ 1558 (1761)
++ ..+++.||+||+++. +..... . .. ...+.|.+++.++|+|++
T Consensus 236 ~g------~~v~~~YG~TE~~g~~~~~~~~--~----------------------~~-----~g~~~~~~~~~~~i~d~~ 280 (443)
T 2y4o_A 236 VG------IDALDIYGLSEVMGPGVACECV--E----------------------TK-----DGPVIWEDHFYPEIIDPV 280 (443)
T ss_dssp HT------CEEEEEEEETTTTEEEEEEECT--T----------------------TC-----CSEEECTTTEEEEEECTT
T ss_pred hC------cCEEeccCchhhcCCeEEeccC--C----------------------CC-----CceEEccCCeEEEEEcCC
Confidence 73 579999999997432 211100 0 00 004556789999999987
Q ss_pred CCCCCCCCcceEEEEcCCcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEeccCCCCCCCCCCCCCCCcc
Q psy14338 1559 TKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKL 1638 (1761)
Q Consensus 1559 ~~~~~p~G~~GEL~i~g~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~~~~~d~d~~~~~~g~G~~ 1638 (1761)
+++++|.|+.|||+|+|.. ++.| ..+||+|||+|++ ++| | |+.
T Consensus 281 ~g~~~~~G~~Gel~v~~~t---------------~~~~---------p~~~y~TGDl~~~------~~~-----c--G~~ 323 (443)
T 2y4o_A 281 TGEVLPDGSQGELVFTSLT---------------KEAM---------PVIRYRTRDLTAL------LPP-----T--ARA 323 (443)
T ss_dssp TCCBCCTTCCEEEEEEESS---------------CSSS---------CCSSEEEEEEECE------ECC-----S--SSS
T ss_pred CCCCCCCCCceEEEEeCCC---------------cccC---------hhheeecCCEEEE------cCC-----C--CCC
Confidence 7999999999999999721 1233 2579999999999 655 2 441
Q ss_pred cceE-EEEcccCCeEEeCCeecChHHHHHHHHHhccCcceeEEEee-----CCeEEEEEEeCC------CchhHhhHHHH
Q psy14338 1639 HDAV-FVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELDG------NESEALDLVPL 1706 (1761)
Q Consensus 1639 ~~~l-~~~GR~dd~Iki~G~rI~~~eIE~~~l~~~p~V~~a~Vv~~-----~~~~~a~v~~~~------~~~~~~~l~~~ 1706 (1761)
..+| +|+||+||+||++|+||+|.|||+ +|.+||+|.+++|++. ++.++++|+... ...+.++++++
T Consensus 324 ~~~l~~i~GR~~d~i~~~G~~v~p~eiE~-~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~l~~~ 402 (443)
T 2y4o_A 324 MRRLAKITGRSDDMLIVRGVNVFPSQIEE-IVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARE 402 (443)
T ss_dssp SCEECCCCEESSCCEEETTEEECHHHHHH-HHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTTCCHHHHHHHHHH
T ss_pred ccccCccccccCCeEEECCEEECHHHHHH-HHHhCcCcCccEEEEEecCCCCceEEEEEEECCcccccchhhHHHHHHHH
Confidence 1112 899999999999999999999999 8999999999888763 347888888753 23456789999
Q ss_pred HHHHHhhhcC-ceeeEEEEECCCCccCCCchhhhHHHH
Q psy14338 1707 VTNAVLEEHH-LIVGVAVVVDPGVVPINSRGEKQRMHL 1743 (1761)
Q Consensus 1707 l~~~~Lp~~~-~vP~~i~~v~~~~lP~t~~GKvdR~~L 1743 (1761)
|+++ |+ .| ++|..+.+++.++||+|+|||++|+..
T Consensus 403 l~~~-l~-~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~ 438 (443)
T 2y4o_A 403 LQHR-IK-TMVGVSSGVTVLAAGGIPATATGKARRVID 438 (443)
T ss_dssp HHHH-HH-HHTCCCCEEEEECTTCSCCCTTSCCCSEEE
T ss_pred HHHH-HH-HHhCCceEEEEeCCCcccCccCCcceEEEe
Confidence 9997 88 55 599988888544999999999999743
No 70
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=1.4e-42 Score=438.15 Aligned_cols=329 Identities=14% Similarity=0.099 Sum_probs=263.1
Q ss_pred CCCCCCEEEEEeccCCCCCCceEEccHHHHHHHHHHHH---HHcCcCCCCeEEEEeCCccChhHHHHHHHHhhcCceEEE
Q psy14338 1325 APTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMK---LACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSIL 1401 (1761)
Q Consensus 1325 ~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~L~~G~~~vl 1401 (1761)
...++++++|+|||||||+||||+++|+++.+.+.... ..+++.++|+++..+++.++.+....++.++..|+++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 45678999999999999999999999999987765543 367889999998888875555554667889999999998
Q ss_pred eCCCccccCHHHHHHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCC--CCCcceEEEeecCCCChHHHHHHHHHH
Q psy14338 1402 IPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNI--ALGCVRTCVVVAEERPRIHLTSAFSKL 1479 (1761)
Q Consensus 1402 ~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~--~l~~Lr~v~~gGe~l~~~~l~~~~~~~ 1479 (1761)
.+. +++..+++.|+++++|+++++|+++..|++... .... .+++||.+++|||++++ .+.+++.+.
T Consensus 166 ~~~----~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~-------~~~~~~~~~~lr~i~~gGe~l~~-~~~~~~~~~ 233 (437)
T 2y27_A 166 FGG----GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIE-------RQGLDPVQSSLRIGIFGAEPWTN-DMRVAIEQR 233 (437)
T ss_dssp CCS----CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH-------HTTCCGGGSSCCEEEEESSCCCH-HHHHHHHHH
T ss_pred CCC----CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHH-------HcCCCcccCCeeEEEEcCccCCH-HHHHHHHHH
Confidence 774 589999999999999999999999999977431 1222 24789999999999999 888888877
Q ss_pred HhhCCCCCcccccccccccccee-eecCCCCCCCceeEecccccccCcceecccCCCCccceeccccccCCcEEEEEcCC
Q psy14338 1480 FSALGLSPRAVSTSFGCRVNIAI-CLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLPGVKVIIANPE 1558 (1761)
Q Consensus 1480 ~~~~g~~e~~i~~~yG~tE~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~ 1558 (1761)
++ ..+++.||+||+++. +..... . .. ..+|.|.+++.++|+|++
T Consensus 234 ~g------~~v~~~YG~TE~~g~~~~~~~~--~----------------------~~-----~g~~~~~~~~~~~i~d~~ 278 (437)
T 2y27_A 234 MG------IDAVDIYGLSEVMGPGVASECV--E----------------------TK-----DGPTIWEDHFYPEIIDPE 278 (437)
T ss_dssp HT------SEEEEEEEETTTTEEEEEECCT--T----------------------TC-----SSCEECTTTEEEEEECTT
T ss_pred HC------cCEEecCCchhhcCCeeEEecC--C----------------------CC-----CceeEccCceEEEEEcCC
Confidence 73 579999999997432 221110 0 00 014667789999999988
Q ss_pred CCCCCCCCcceEEEEcCCcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEeccCCCCC-CCCCCCCCCCc
Q psy14338 1559 TKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGV-AGAPVPPGVSK 1637 (1761)
Q Consensus 1559 ~~~~~p~G~~GEL~i~g~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~~~~~d~-d~~~~~~g~G~ 1637 (1761)
+++++|.|+.|||+|+|.. ++.| ..+||+|||+|++ ++ | |+
T Consensus 279 ~g~~~~~g~~Gel~v~~~t---------------~~~~---------~~~~y~TGDl~~~------~~~~--------G~ 320 (437)
T 2y27_A 279 TGEVLPDGELGELVFTSLT---------------KEAL---------PIIRYRTRDLTRL------LPGT--------AR 320 (437)
T ss_dssp TCCBCCTTCCEEEEEEESS---------------CSSS---------CCCSEEEEEEECE------ECCS--------SS
T ss_pred CCCCCCCCCccEEEEecCC---------------cCCc---------hhheeecCCEEEE------eCCC--------CC
Confidence 8999999999999999721 1233 3579999999999 77 7 87
Q ss_pred ccceE-EEEcccCCeEEeCCeecChHHHHHHHHHhccCcceeEEEee-----CCeEEEEEEeCCCc----hhHhhHHHHH
Q psy14338 1638 LHDAV-FVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELDGNE----SEALDLVPLV 1707 (1761)
Q Consensus 1638 ~~~~l-~~~GR~dd~Iki~G~rI~~~eIE~~~l~~~p~V~~a~Vv~~-----~~~~~a~v~~~~~~----~~~~~l~~~l 1707 (1761)
....+ +|+||+||+||++|+||+|.|||+ +|.+||+|.+++|++. ++.++++|+..... .+.++++++|
T Consensus 321 ~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~-~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l 399 (437)
T 2y27_A 321 TMRRMEKITGRSDDMMIVRGVNVFPTQIEE-QLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAPDTAAIQVAKQAL 399 (437)
T ss_dssp SSCEECCCCEEGGGCEEETTEEECHHHHHH-HHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTTTCHHHHHHHHHHH
T ss_pred CccccCccccccCCeEEECCeEECHHHHHH-HHHhCcCcCccEEEEEeecCCCceEEEEEEECCCccchhhhHHHHHHHH
Confidence 22223 899999999999999999999999 8999999999888762 35788888875332 4567899999
Q ss_pred HHHHhhhcC-ceeeEEEEECCCCccCCCchhhhHHH
Q psy14338 1708 TNAVLEEHH-LIVGVAVVVDPGVVPINSRGEKQRMH 1742 (1761)
Q Consensus 1708 ~~~~Lp~~~-~vP~~i~~v~~~~lP~t~~GKvdR~~ 1742 (1761)
+++ |+ .| ++|..|.+++.++||+|+ ||++|+.
T Consensus 400 ~~~-l~-~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 400 AYD-IK-SLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp HHH-HH-HHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred HHH-HH-HhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 987 88 66 599999998544999999 9999864
No 71
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.96 E-value=3.7e-29 Score=307.85 Aligned_cols=237 Identities=15% Similarity=0.092 Sum_probs=181.3
Q ss_pred CCCCCcEEEEecCCCCCCceEEEEchHHHHHHHHHHH---HHcCCCCCCeEEEccCC-cchhhhHHHHHHHHhcCcEEEE
Q psy14338 251 LTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALT---QACHYTEGENMVCVLDF-KRETGLWHSVLTSVLNGMHAVY 326 (1761)
Q Consensus 251 ~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~~~-~~~~~~~~~i~~~L~~G~~lvi 326 (1761)
..+++++||+|||||||+||||+++|+++.+.+.+.. ..++++++|++++++|+ +|+.++.. .+.++..|+ +++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~-~~~~~~~G~-~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAIN-KERALRLGG-MFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHH-HHHHHHTTS-CEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHH-HHHHHHcCC-EEE
Confidence 4789999999999999999999999999999888654 45678899999999999 99999885 788899999 666
Q ss_pred eCCccccCCHH-----------------------HHHHHHHhcCceEEEecCHHHHHHhhcCCCCCCCCCCceeEEEecC
Q psy14338 327 IPYALMKVNPA-----------------------SWMQMITKYRASVAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGD 383 (1761)
Q Consensus 327 ~~~~~~~~~~~-----------------------~l~~~i~~~~vt~~~~~p~~~~~~ll~~~~~~~~~l~~Lr~v~~gg 383 (1761)
+. .++|. .+++.|+++++|++.++| +++..++........++++||.+++|
T Consensus 166 ~~----~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P-s~~~~l~~~~~~~~~~~~~lr~i~~g- 239 (369)
T 3hgu_A 166 SI----DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTP-PVLRELLKRPEVVLQMKQSLAQITLG- 239 (369)
T ss_dssp CC----CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECH-HHHHHHTTCHHHHHHHHHHCSEEEEE-
T ss_pred Cc----cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCH-HHHHHHHhhhhhhccccCCeeEEEEC-
Confidence 55 56777 888899999999999996 58888876643333456899999999
Q ss_pred CCccCCHHHHHHHH-HHhhhCCCCCCccccccccccccceEeecCCCCCcccCCCccccccCcccceeeecCCCccCccc
Q psy14338 384 GANPWSLSSCDQFL-SVFQSKGLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLT 462 (1761)
Q Consensus 384 ~Ge~l~~~~~~~~~-~~~~~~g~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (1761)
||++++++.++|. +.++. + .++|.||+||++.++...+
T Consensus 240 -Ge~l~~~~~~~~~~~~~p~--~---~v~~~YG~TE~~~~~~~~~----------------------------------- 278 (369)
T 3hgu_A 240 -GTELNLDEIKFIASEILPD--C---EFSASYGSTSALGVSRSLL----------------------------------- 278 (369)
T ss_dssp -SSCCCHHHHHHHHHHTCTT--S---EEEEEEEEGGGTEEEEECC-----------------------------------
T ss_pred -CccCCHHHHHHHHHHhCCC--c---EEEcccCchhhhcceeccc-----------------------------------
Confidence 9999999999999 88742 2 4999999999987664322
Q ss_pred ccccCCC------CCCcEEEEEeC-CCCcccCCCCCceEEEEecCCccccccCCCccccccccccccccCCCccCCCceE
Q psy14338 463 LQDCGQV------MPGCIMTVVKM-DSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYT 535 (1761)
Q Consensus 463 ~~~iG~p------~~~~~~~I~d~-~~~~~~~p~G~~GEL~i~G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~y 535 (1761)
..++|+| +++++++|+|+ +++ ++|.|++|||+|++ ++.+.|. -.|
T Consensus 279 ~~~~G~~~~~~~~~~~~~v~ivD~~~g~--~vp~G~~GEl~vt~------------l~~~~~l--------------~ry 330 (369)
T 3hgu_A 279 ITSESQQVIYDSFSPFITYDVVDSITAQ--TVEYGERGNVIVTH------------LSPWAFY--------------PRV 330 (369)
T ss_dssp BCTTCSSCEEECCTTTEEEEEECTTTCS--BCCTTCEEEEEEEE------------EETTEEE--------------EEE
T ss_pred cccCCCcccccCCCCCeEEEEECCCCCc--CCCCCCceEEEEEE------------cCccccc--------------ccc
Confidence 1158999 99999999998 665 69999999999987 2333342 359
Q ss_pred eecceEEEeCC--C-------eEEEEeccCCeEEECCc
Q psy14338 536 RSGLLGFLGPG--G-------LVFVCGSRDGLMTVTGR 564 (1761)
Q Consensus 536 rTGDl~~~~~d--G-------~l~~~GR~d~qvki~G~ 564 (1761)
+|||++++.+. | .+..++|.|+++||+|.
T Consensus 331 ~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 331 AERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred cCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 99999988642 3 47889999999999985
No 72
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.94 E-value=4.1e-27 Score=289.58 Aligned_cols=248 Identities=11% Similarity=0.014 Sum_probs=178.7
Q ss_pred CCCCCCEEEEEeccCCCCCCceEEccHHHHHHHHHHHH---HHcCcCCCCeEEEEeCC-ccChhHHHHHHHHhhcCceEE
Q psy14338 1325 APTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMK---LACELYPSRHIALCLDP-YCGLGFALWVLSSVYSGHHSI 1400 (1761)
Q Consensus 1325 ~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~L~~G~~~v 1400 (1761)
...++++++|+|||||||+||||+++|+++.+.+.+.. ..+++.++|+++..+|+ +|..++ ...+.++..|+ ++
T Consensus 87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~-~~~~~~~~~G~-~v 164 (369)
T 3hgu_A 87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGA-INKERALRLGG-MF 164 (369)
T ss_dssp TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHH-HHHHHHHHTTS-CE
T ss_pred cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhH-HHHHHHHHcCC-EE
Confidence 34678999999999999999999999999999888654 45678888999999988 666666 45666788999 55
Q ss_pred EeCCCccccCHH-----------------------HHHHHHHhcCceEeecchHHHHHHHhhhcCCcchhhccCCCCCcc
Q psy14338 1401 LIPPSEVEVNPA-----------------------LWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCV 1457 (1761)
Q Consensus 1401 l~~~~~~~~~~~-----------------------~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~~~~~~l~~L 1457 (1761)
+... ++|. .+++.|+++++|+++++|+++..|++.. .....++++|
T Consensus 165 ~~~~----~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~-------~~~~~~~~~l 233 (369)
T 3hgu_A 165 FSID----IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRP-------EVVLQMKQSL 233 (369)
T ss_dssp ECCC----CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCH-------HHHHHHHHHC
T ss_pred ECcc----CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhh-------hhhccccCCe
Confidence 5543 5777 8888999999999999999999997631 1122456789
Q ss_pred eEEEeecCCCChHHHHHHHH-HHHhhCCCCCccccccccccccceeeecCCCCCCCceeEecccccccCcceecccCCCC
Q psy14338 1458 RTCVVVAEERPRIHLTSAFS-KLFSALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPH 1536 (1761)
Q Consensus 1458 r~v~~gGe~l~~~~l~~~~~-~~~~~~g~~e~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1536 (1761)
|.+++|||++++ ++.+++. +.|+. +.+++.||+||+++++.....
T Consensus 234 r~i~~gGe~l~~-~~~~~~~~~~~p~-----~~v~~~YG~TE~~~~~~~~~~---------------------------- 279 (369)
T 3hgu_A 234 AQITLGGTELNL-DEIKFIASEILPD-----CEFSASYGSTSALGVSRSLLI---------------------------- 279 (369)
T ss_dssp SEEEEESSCCCH-HHHHHHHHHTCTT-----SEEEEEEEEGGGTEEEEECCB----------------------------
T ss_pred eEEEECCccCCH-HHHHHHHHHhCCC-----cEEEcccCchhhhcceecccc----------------------------
Confidence 999999999999 7888888 77632 689999999998765421110
Q ss_pred ccceeccccc------cCCcEEEEEcCCCCCCCCCCcceEEEEcCCcccccccCCCCChhhhHHHhhhhcccCCCCCceE
Q psy14338 1537 SLCLLESGKL------LPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYA 1610 (1761)
Q Consensus 1537 ~~~~~~iG~p------~~~~~~~v~d~~~~~~~p~G~~GEL~i~g~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~y 1610 (1761)
.++|+| +++++++|+|+++++++|.|++|||+|++..-. .| --.|
T Consensus 280 ----~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~vt~l~~~---------------~~----------l~ry 330 (369)
T 3hgu_A 280 ----TSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIVTHLSPW---------------AF----------YPRV 330 (369)
T ss_dssp ----CTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEEEEEEETT---------------EE----------EEEE
T ss_pred ----ccCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEEEEEcCcc---------------cc----------cccc
Confidence 037898 999999999986799999999999999874211 11 1259
Q ss_pred eeCceeEEeccCCCCCCCCCCCCCCCcccceEEEEcccCCeEEeCCe
Q psy14338 1611 RTGYLGFLRRTSPAGVAGAPVPPGVSKLHDAVFVVGALDETIMLRGM 1657 (1761)
Q Consensus 1611 rTGDlg~~~~~~~~d~d~~~~~~g~G~~~~~l~~~GR~dd~Iki~G~ 1657 (1761)
+|||++++.+ ..+| -..+|.+. +..++|.|+++||+|.
T Consensus 331 ~tgD~~~~~~----~~~g-~~~d~~~~----v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 331 AERDTAIRLP----GVSG-FAGDRLAD----IEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEEEEEEC----CSTT-CSSCEEEE----EEECC-----------
T ss_pred cCCceEEEec----CCCC-CcCccccc----ceeccccCCCceeeec
Confidence 9999999853 3331 11222234 7889999999999985
No 73
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.34 E-value=1.3e-12 Score=128.70 Aligned_cols=92 Identities=25% Similarity=0.393 Sum_probs=69.8
Q ss_pred cccCCeEEeCCeecChHHHHHHHHHhccCcceeEEEee-----CCeEEEEEEeCCC----chhHhhHHHHHHHHHhhhcC
Q psy14338 1646 GALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELDGN----ESEALDLVPLVTNAVLEEHH 1716 (1761)
Q Consensus 1646 GR~dd~Iki~G~rI~~~eIE~~~l~~~p~V~~a~Vv~~-----~~~~~a~v~~~~~----~~~~~~l~~~l~~~~Lp~~~ 1716 (1761)
.|.|||||++|+||+|.|||+ +|.+||+|.+++|++. ++.+.++|+.... ....+++.+.++++ +...+
T Consensus 1 srADDmIiv~G~nv~P~eIE~-vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~-l~~~~ 78 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIET-ILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQ-LKDEI 78 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHH-HHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHH-HHHHH
T ss_pred CCcCEEEEECCEEECHHHHHH-HHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHH-HHHHh
Confidence 389999999999999999999 8999999999988864 3467777776422 22345677777776 55455
Q ss_pred ceeeEEEEECCCCccCCCchhhhH
Q psy14338 1717 LIVGVAVVVDPGVVPINSRGEKQR 1740 (1761)
Q Consensus 1717 ~vP~~i~~v~~~~lP~t~~GKvdR 1740 (1761)
.+|..+.++++++||+| +||++|
T Consensus 79 gv~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 79 LVTPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp SSCCEEEEECTTCSCCC----CCC
T ss_pred CCccceEEEcCCeecCC-CCCcch
Confidence 67777889987799998 799987
No 74
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.30 E-value=3e-12 Score=125.76 Aligned_cols=93 Identities=25% Similarity=0.395 Sum_probs=71.5
Q ss_pred cccCCeEEeCCeecChHHHHHHHHHhccCcceeEEEee-----CCeEEEEEEeCCC----chhHhhHHHHHHHHHhhhcC
Q psy14338 1646 GALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELDGN----ESEALDLVPLVTNAVLEEHH 1716 (1761)
Q Consensus 1646 GR~dd~Iki~G~rI~~~eIE~~~l~~~p~V~~a~Vv~~-----~~~~~a~v~~~~~----~~~~~~l~~~l~~~~Lp~~~ 1716 (1761)
||.||+||++|+||+|.|||+ ++.+||+|.++++++. ++.++++|+.++. ..+.+++.+.++++ +...+
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~-~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~~~~~~~~~~~~~~l~~~i~~~-l~~~~ 78 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIET-ILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQ-LKDEI 78 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHH-HHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHH-HHHHH
T ss_pred CCccCEEEECCEEECHHHHHH-HHHhCCCcCCcEEEEEEcCCCceEEEEEEEEcCccccchhHHHHHHHHHHHH-HHHhh
Confidence 899999999999999999999 8999999998777642 3578888887322 13456788888876 54356
Q ss_pred ceeeEEEEECCCCccCCCchhhhHH
Q psy14338 1717 LIVGVAVVVDPGVVPINSRGEKQRM 1741 (1761)
Q Consensus 1717 ~vP~~i~~v~~~~lP~t~~GKvdR~ 1741 (1761)
.+|..+.++++++||+| +||++|.
T Consensus 79 ~~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 79 LVTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp SSCCEEEEECTTCSCCC----CCCE
T ss_pred CCceEEEEECCCCccCC-CCceEEE
Confidence 66768999988899999 9999873
No 75
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.27 E-value=9.5e-12 Score=122.43 Aligned_cols=94 Identities=18% Similarity=0.205 Sum_probs=72.5
Q ss_pred eccCCeEEECCcccChHHHHHHHHhcCCccccccceEEEEEEec-CCCceEEEEEEeCCCC--C---HHHHHHHHHHHHH
Q psy14338 553 GSRDGLMTVTGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIRV-LRDERICVIAEQRPDC--S---EEESFQWMSRVLQ 626 (1761)
Q Consensus 553 GR~d~qvki~G~rIe~~eIE~~l~~~~~v~~~~~~~a~v~~~~~-~~~~~l~a~v~~~~~~--~---~~~l~~~l~~~Lp 626 (1761)
.|.|||||++|+||+|.|||++|.+++++ .+++++++++ .+++.++++++..++. + .+++.+.+++.+.
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v-----~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~ 75 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKEL-----GSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLK 75 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTE-----EEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCc-----ccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHH
Confidence 48999999999999999999999999888 6888888874 5678888888876652 2 3456677777887
Q ss_pred Hhh-hcceeeeeEEEEeCCCCccCCCCCcccH
Q psy14338 627 AVD-SIHQVGLYCLALVPPNYLPKTPLGGIHL 657 (1761)
Q Consensus 627 ~y~-~P~~i~~~~v~~v~~~~lP~t~~GKidR 657 (1761)
.++ +|..+ .|++.++||+| +||++|
T Consensus 76 ~~~gv~~~v-----~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 76 DEILVTPRV-----KLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp HHHSSCCEE-----EEECTTCSCCC----CCC
T ss_pred HHhCCccce-----EEEcCCeecCC-CCCcch
Confidence 765 44443 57888899998 799987
No 76
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.21 E-value=3.2e-11 Score=118.33 Aligned_cols=94 Identities=18% Similarity=0.234 Sum_probs=72.0
Q ss_pred eccCCeEEECCcccChHHHHHHHHhcCCccccccceEEEEEEe-cCCCceEEEEEEeCCCC------CHHHHHHHHHHHH
Q psy14338 553 GSRDGLMTVTGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIR-VLRDERICVIAEQRPDC------SEEESFQWMSRVL 625 (1761)
Q Consensus 553 GR~d~qvki~G~rIe~~eIE~~l~~~~~v~~~~~~~a~v~~~~-~~~~~~l~a~v~~~~~~------~~~~l~~~l~~~L 625 (1761)
||.||+||++|+||+|.|||++|.+++++ .++++++.+ +.+++.++++++. ++. +.+++.+.+++.+
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v-----~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l 74 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKEL-----GSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQL 74 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTE-----EEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCc-----CCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHH
Confidence 89999999999999999999999998777 567777666 3467889999988 542 3467888888888
Q ss_pred HH-hhhcceeeeeEEEEeCCCCccCCCCCcccHH
Q psy14338 626 QA-VDSIHQVGLYCLALVPPNYLPKTPLGGIHLS 658 (1761)
Q Consensus 626 p~-y~~P~~i~~~~v~~v~~~~lP~t~~GKidR~ 658 (1761)
.. +.+|..+ .|+...+||+| +||++|.
T Consensus 75 ~~~~~~~~~v-----~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 75 KDEILVTPRV-----KLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp HHHHSSCCEE-----EEECTTCSCCC----CCCE
T ss_pred HHhhCCceEE-----EEECCCCccCC-CCceEEE
Confidence 64 5565443 67877799999 9999874
No 77
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.46 E-value=2.8e-06 Score=106.33 Aligned_cols=62 Identities=10% Similarity=0.134 Sum_probs=53.9
Q ss_pred CCCCCceEEEEecCCccccccCCCccccccccccccccCCCccCCCceEeecceEEEeC----CCeEEEEeccCCeEEEC
Q psy14338 487 CKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGFLGP----GGLVFVCGSRDGLMTVT 562 (1761)
Q Consensus 487 ~p~G~~GEL~i~G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~~~~----dG~l~~~GR~d~qvki~ 562 (1761)
|..|+.+||+|...+ |+|. ||+||++++.. ...+.|+||.|+++.++
T Consensus 393 Ve~G~~YelViTt~~---GL~R--------------------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~ 443 (609)
T 4b2g_A 393 VEVGKEYELVITTYA---GLYR--------------------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSID 443 (609)
T ss_dssp CCTTCEEEEEEECTT---SCCS--------------------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSS
T ss_pred cCCCCeEEEehhhhh---hhhh--------------------------eecCCEEEEeecCCCCcEEEEEEecCCeEEcc
Confidence 789999999997642 4432 99999999973 56899999999999999
Q ss_pred CcccChHHHHHHHHh
Q psy14338 563 GRKHNADDIIATVLA 577 (1761)
Q Consensus 563 G~rIe~~eIE~~l~~ 577 (1761)
|++|...+||.++.+
T Consensus 444 Geki~~~~v~~av~~ 458 (609)
T 4b2g_A 444 SDKTDEAELQKAVDN 458 (609)
T ss_dssp SCCBCHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHH
Confidence 999999999999875
No 78
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.37 E-value=3.2e-06 Score=105.89 Aligned_cols=64 Identities=14% Similarity=0.157 Sum_probs=54.1
Q ss_pred CCCCCceEEEEecCCccccccCCCccccccccccccccCCCccCCCceEeecceEEEeC----CCeEEEEeccCCeEEEC
Q psy14338 487 CKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGFLGP----GGLVFVCGSRDGLMTVT 562 (1761)
Q Consensus 487 ~p~G~~GEL~i~G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~~~~----dG~l~~~GR~d~qvki~ 562 (1761)
|..|+.+||+|...+ |.|. ||+||++++.. ...+.|+||.|+++.++
T Consensus 381 Ve~G~~YelViTt~~---GL~R--------------------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~ 431 (581)
T 4eql_A 381 VKLGCTYEPVVTNFA---GLYR--------------------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSID 431 (581)
T ss_dssp CCTTCEEEEEEECSS---SCCS--------------------------EECCEEEEEEEEETTEEEEEEEEETTEEECSS
T ss_pred cCCCceEEEEEeecc---ceee--------------------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEee
Confidence 778999999998752 3221 99999999985 45799999999999999
Q ss_pred CcccChHHHHHHHHhcC
Q psy14338 563 GRKHNADDIIATVLAVE 579 (1761)
Q Consensus 563 G~rIe~~eIE~~l~~~~ 579 (1761)
|++|...+||++|.+..
T Consensus 432 Gekl~~~~v~~al~~a~ 448 (581)
T 4eql_A 432 SDKTNEEDLFKAVSQAK 448 (581)
T ss_dssp SCCEEHHHHHHHHHHC-
T ss_pred eeECCHHHHHHHHHHHH
Confidence 99999999999998654
No 79
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.29 E-value=9e-06 Score=101.47 Aligned_cols=63 Identities=14% Similarity=0.068 Sum_probs=53.3
Q ss_pred cCCCCCceEEEEecCCccccccCCCccccccccccccccCCCccCCCceEeecceEEEeCC----CeEEEEeccCCeEEE
Q psy14338 486 LCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGFLGPG----GLVFVCGSRDGLMTV 561 (1761)
Q Consensus 486 ~~p~G~~GEL~i~G~~l~~GY~~~p~~T~~~f~~~p~~~~g~~~~~~~~yrTGDl~~~~~d----G~l~~~GR~d~qvki 561 (1761)
.|..|+.+||+|...+ |.|. ||+||++++..- ..+.|+||.|+++.+
T Consensus 387 eve~G~~YelviTt~~---GL~R--------------------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~ 437 (581)
T 4epl_A 387 QVKIGEEYEVVITNYA---GLYR--------------------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSI 437 (581)
T ss_dssp GCCTTCEEEEEEESTT---SCSS--------------------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS
T ss_pred HcCCCCeEEEEEeecc---ceee--------------------------EEcCCEEEEecccCCCcEEEEEeecCCeEEe
Confidence 3889999999998753 3221 999999999732 469999999999999
Q ss_pred CCcccChHHHHHHHHh
Q psy14338 562 TGRKHNADDIIATVLA 577 (1761)
Q Consensus 562 ~G~rIe~~eIE~~l~~ 577 (1761)
+|+++...+||.++.+
T Consensus 438 ~Ge~~~~~~v~~al~~ 453 (581)
T 4epl_A 438 NIDKNTERDLQLSVES 453 (581)
T ss_dssp SSCCBCHHHHHHHHHH
T ss_pred eeeECCHHHHHHHHHH
Confidence 9999999999998875
No 80
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.17 E-value=6.3e-06 Score=103.25 Aligned_cols=65 Identities=8% Similarity=0.076 Sum_probs=53.8
Q ss_pred CCCCCCcceEEEEcCCcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEeccCCCCC--CCCCCCCCCCcc
Q psy14338 1561 GQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGV--AGAPVPPGVSKL 1638 (1761)
Q Consensus 1561 ~~~p~G~~GEL~i~g~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~~~~~d~--d~~~~~~g~G~~ 1638 (1761)
..|..|+.+||.|+.. .|.|. ||+||++++ +. + .
T Consensus 391 ~eVe~G~~YelViTt~---~GL~R-------------------------Yr~GD~v~v------~~f~~----------~ 426 (609)
T 4b2g_A 391 AHVEVGKEYELVITTY---AGLYR-------------------------YRVGDILRV------TGFHN----------S 426 (609)
T ss_dssp GGCCTTCEEEEEEECT---TSCCS-------------------------EEEEEEEEE------EEEET----------T
T ss_pred hHcCCCCeEEEehhhh---hhhhh-------------------------eecCCEEEE------eecCC----------C
Confidence 4688999999999764 47775 999999999 42 2 2
Q ss_pred cceEEEEcccCCeEEeCCeecChHHHHHHHHH
Q psy14338 1639 HDAVFVVGALDETIMLRGMRYHPIDIENSVMR 1670 (1761)
Q Consensus 1639 ~~~l~~~GR~dd~Iki~G~rI~~~eIE~~~l~ 1670 (1761)
.+++.|+||.|++|+++|.+|.+.+||. ++.
T Consensus 427 ~p~i~~~gR~~~~l~~~Geki~~~~v~~-av~ 457 (609)
T 4b2g_A 427 APQFHFVRRKNVLLSIDSDKTDEAELQK-AVD 457 (609)
T ss_dssp EEEEEEEEETTCCBCSSSCCBCHHHHHH-HHH
T ss_pred CcEEEEEEecCCeEEccccCCCHHHHHH-HHH
Confidence 2449999999999999999999999999 554
No 81
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.12 E-value=2.1e-05 Score=98.53 Aligned_cols=66 Identities=11% Similarity=0.013 Sum_probs=53.9
Q ss_pred CCCCCCcceEEEEcCCcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEeccCCCCC--CCCCCCCCCCcc
Q psy14338 1561 GQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGV--AGAPVPPGVSKL 1638 (1761)
Q Consensus 1561 ~~~p~G~~GEL~i~g~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~~~~~d~--d~~~~~~g~G~~ 1638 (1761)
..|..|+.+||.|+..+ |-|. ||+||+++. .. + .
T Consensus 379 ~eVe~G~~YelViTt~~---GL~R-------------------------Yr~GD~v~v------~~f~~----------~ 414 (581)
T 4eql_A 379 EDVKLGCTYEPVVTNFA---GLYR-------------------------MRVGDIVLV------TGFYN----------N 414 (581)
T ss_dssp GGCCTTCEEEEEEECSS---SCCS-------------------------EECCEEEEE------EEEET----------T
T ss_pred HHcCCCceEEEEEeecc---ceee-------------------------EEcCCEEEE------cccCC----------C
Confidence 45678999999998753 5554 999999999 43 2 2
Q ss_pred cceEEEEcccCCeEEeCCeecChHHHHHHHHHh
Q psy14338 1639 HDAVFVVGALDETIMLRGMRYHPIDIENSVMRA 1671 (1761)
Q Consensus 1639 ~~~l~~~GR~dd~Iki~G~rI~~~eIE~~~l~~ 1671 (1761)
.+++.|+||.|+++.++|++|...+||. ++.+
T Consensus 415 ~p~i~f~gR~~~~l~~~Gekl~~~~v~~-al~~ 446 (581)
T 4eql_A 415 APQFKFVRRENVVLSIDSDKTNEEDLFK-AVSQ 446 (581)
T ss_dssp EEEEEEEEETTEEECSSSCCEEHHHHHH-HHHH
T ss_pred CcEEEEEEecCCEEEeeeeECCHHHHHH-HHHH
Confidence 3459999999999999999999999999 5553
No 82
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.02 E-value=0.00011 Score=91.82 Aligned_cols=66 Identities=9% Similarity=-0.008 Sum_probs=54.4
Q ss_pred CCCCCCcceEEEEcCCcccccccCCCCChhhhHHHhhhhcccCCCCCceEeeCceeEEeccCCCCCCCCCCCCCCCc--c
Q psy14338 1561 GQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSK--L 1638 (1761)
Q Consensus 1561 ~~~p~G~~GEL~i~g~~v~~GY~~~~~~p~~t~~~F~~~p~~~~~~~~~yrTGDlg~~~~~~~~d~d~~~~~~g~G~--~ 1638 (1761)
..|..|+.+||.|+..+ |-|. ||+||++++. |. .
T Consensus 386 ~eve~G~~YelviTt~~---GL~R-------------------------Yr~GD~v~v~----------------g~~~~ 421 (581)
T 4epl_A 386 TQVKIGEEYEVVITNYA---GLYR-------------------------YRLGDVVKVI----------------GFYNN 421 (581)
T ss_dssp GGCCTTCEEEEEEESTT---SCSS-------------------------EEEEEEEEEE----------------EEETT
T ss_pred HHcCCCCeEEEEEeecc---ceee-------------------------EEcCCEEEEe----------------cccCC
Confidence 46889999999998753 5554 9999999993 21 2
Q ss_pred cceEEEEcccCCeEEeCCeecChHHHHHHHHHh
Q psy14338 1639 HDAVFVVGALDETIMLRGMRYHPIDIENSVMRA 1671 (1761)
Q Consensus 1639 ~~~l~~~GR~dd~Iki~G~rI~~~eIE~~~l~~ 1671 (1761)
.+++.|+||.|++++++|.++...+||. ++..
T Consensus 422 ~p~~~~~gR~~~~l~~~Ge~~~~~~v~~-al~~ 453 (581)
T 4epl_A 422 TPQLKFICRRNLILSINIDKNTERDLQL-SVES 453 (581)
T ss_dssp EEEEEEEEETTCCBCSSSCCBCHHHHHH-HHHH
T ss_pred CcEEEEEeecCCeEEeeeeECCHHHHHH-HHHH
Confidence 4569999999999999999999999999 5543
No 83
>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}
Probab=27.59 E-value=13 Score=46.44 Aligned_cols=31 Identities=13% Similarity=0.082 Sum_probs=0.0
Q ss_pred cccCCCCCcccccccceeccccccccccCCCCCC
Q psy14338 730 REIHSDIGPASVMVGNIVQGNRLASAQGRDMGGP 763 (1761)
Q Consensus 730 ~~~~~~~~~~s~~~~~~~~~~~l~~~~~~~~~~~ 763 (1761)
.+.++++|++|+.+.++.... .+ .+..+...
T Consensus 66 ~~~ff~lGg~Sl~a~~l~~~~--~~-~~~~~~~~ 96 (508)
T 4f6l_B 66 DDDFFELGGNSLEAMLVVSHL--KR-FGHHISMQ 96 (508)
T ss_dssp ----------------------------------
T ss_pred CCChHHcCchHHHHHHHHHHH--HH-cCCCccHH
Confidence 345678999999999888743 33 45544433
Done!