RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14338
(1761 letters)
>gnl|CDD|213273 cd05905, Dip2, Disco-interacting protein 2 (Dip2). Dip2 proteins
show sequence similarity to other members of the
adenylate forming enzyme family, including insect
luciferase, acetyl CoA ligases and the adenylation
domain of nonribosomal peptide synthetases (NRPS).
However, its function may have diverged from other
members of the superfamily. In mouse embryo, Dip2
homolog A plays an important role in the development of
both vertebrate and invertebrate nervous systems. Dip2A
appears to regulate cell growth and the arrangement of
cells in organs. Biochemically, Dip2A functions as a
receptor of FSTL1, an extracellular glycoprotein, and
may play a role as a cardiovascular protective agent.
Length = 556
Score = 715 bits (1848), Expect = 0.0
Identities = 319/582 (54%), Positives = 393/582 (67%), Gaps = 44/582 (7%)
Query: 104 DPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCA 163
D NGK TLTYGKL SR+ K+AY LL K +K GDR+ LVYP DP +F+ A
Sbjct: 1 DGNGKPLYTLTYGKLWSRAAKIAYALLKK-------LGIKPGDRVVLVYP--DPEDFIAA 51
Query: 164 FYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGS----CDIQVALTSDACLKGLPKTAAG 219
FYGC++AG++PVP+E PL+R GSQQ+G LLGS C + VALTS+ACLKGL G
Sbjct: 52 FYGCLYAGLIPVPVEPPLSRA--GSQQVGALLGSIKHYCGVAVALTSEACLKGLRSKTTG 109
Query: 220 EVVAFKGWPKLTWFVTEH--LAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRA 277
E++ FKGWP+L WFVTE L K KDW P + AYIEY T ++GSVMGVTVT
Sbjct: 110 EILKFKGWPRLVWFVTEIKTLKKPIKDWNPHLPPANLDTAYIEYKTSKEGSVMGVTVTHQ 169
Query: 278 AMLSHCRALTQACHYTEGENMVCVLDFKRETGLWHSVLTSVLNGMHAVYIPYALMKVNPA 337
A+L+HC+AL QAC YTEG +V VLDFK+ G WH LTSV+NGMH + IP ALMK NP
Sbjct: 170 ALLTHCQALKQACQYTEGRTIVNVLDFKKGVGFWHGCLTSVMNGMHTILIPPALMKNNPL 229
Query: 338 SWMQMITKYRASVAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGANPWSLSSCDQFL 397
W Q+I+KY+ +VKSRDLHW L A +D KDI+LS LR+L+V DGA PWSL+SC FL
Sbjct: 230 LWFQIISKYKIKDTLVKSRDLHWALNAHRDQKDINLSCLRMLIVADGARPWSLASCQAFL 289
Query: 398 SVFQSKGLRPDAICPCASSSECLTVSVRRPGRAGVN--ATGRGVLSMSGLSYGVVRVDQE 455
+VFQSKG + PCASS+E TV+ RR G G + GRGVL M+ L +GVVRVD E
Sbjct: 290 NVFQSKG-----LSPCASSTEASTVANRRIGTRGYSGPIPGRGVLDMAALRHGVVRVDSE 344
Query: 456 NSLTSLTLQDCGQVMPGCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNT 515
+ +SL LQD G VMPG M +V D+P LC+TDE+GEI V S+ + Y+GL G++
Sbjct: 345 DKPSSLPLQDSGMVMPGAQMCIVNPDTPP-LCRTDEIGEIWVNSSANATSYYGLTGMTKN 403
Query: 516 TFKVTPLLADGTALSQDTYTRSGLLGFLGPG----------GLVFVCGSRDGLMTVTGRK 565
TF+V P + + ++ Y R+GLLGF+GP GL+FV GS D + V+G +
Sbjct: 404 TFEVFPNSS-SDGIGENPYVRTGLLGFVGPTSHSMGPVVDMGLLFVVGSIDETLEVSGLR 462
Query: 566 HNADDIIATVLAVEPMKFIYRGRIAVFSIRVLRDERICVIAEQRPDCSEEESFQWMSRVL 625
HN DDI ATVL V PM IYRGRIAVFS+ ER+ V+AEQR SEEESFQW+ RVL
Sbjct: 463 HNPDDIEATVLRVHPM--IYRGRIAVFSVT----ERVVVVAEQR--GSEEESFQWVPRVL 514
Query: 626 QAVDSIHQVGLYCLALVPPNYLPKTPLGGIHLSECKRRFLEG 667
A+ S HQV +Y +ALVPP LPKTPLG SE + FLEG
Sbjct: 515 NAILSEHQVIVYVVALVPPGTLPKTPLGEKQRSETRASFLEG 556
Score = 601 bits (1552), Expect = 0.0
Identities = 190/564 (33%), Positives = 282/564 (50%), Gaps = 29/564 (5%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 1258
LT +L RA ++ LL++ I GD V L++P D I AFYGCLY G +PV + PP
Sbjct: 10 LTYGKLWSRAAKIAYALLKKLGIKPGDRVVLVYPDPEDFIAAFYGCLYAGLIPVPVEPPL 69
Query: 1259 ----PQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDM 1314
Q + L +++ + L+++ +K L+SK ++ K WP ++
Sbjct: 70 SRAGSQQVGALLGSIK---HYCGVAVALTSEACLKGLRSKTTGEILKFKGWPRLVWFVTE 126
Query: 1315 PKK-----KLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYP 1369
K K + P AY+++ S G + G+ ++H A+ + C+++K AC+
Sbjct: 127 IKTLKKPIKDWNPHLPPANLDTAYIEYKTSKEGSVMGVTVTHQALLTHCQALKQACQYTE 186
Query: 1370 SRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCS 1429
R I LD G+GF L+SV +G H+ILIPP+ ++ NP LW +S+Y+++DT
Sbjct: 187 GRTIVNVLDFKKGVGFWHGCLTSVMNGMHTILIPPALMKNNPLLWFQIISKYKIKDTLVK 246
Query: 1430 YGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERP-RIHLTSAFSKLFSALGLSPR 1488
+ ++I L C+R +V RP + AF +F + GLSP
Sbjct: 247 SRDLHWALNA------HRDQKDINLSCLRMLIVADGARPWSLASCQAFLNVFQSKGLSPC 300
Query: 1489 AVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLP 1548
A ST N I +G S P P +D+ ALR+ V + P SL L +SG ++P
Sbjct: 301 ASSTEASTVANRRIGTRGYSGPIPGRGVLDMAALRHGVVRVDSEDKPSSLPLQDSGMVMP 360
Query: 1549 GVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGEL 1608
G ++ I NP+T C +GEIWV S NA+ Y+ L G + F G
Sbjct: 361 GAQMCIVNPDTPPLCRTDEIGEIWVNSSANATSYYGLTGMTKNTFEVFPNSSSDGIGENP 420
Query: 1609 YARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDAVFVVGALDETIMLRGMRYHPIDIENSV 1668
Y RTG LGF+ TS + +FVVG++DET+ + G+R++P DIE +V
Sbjct: 421 YVRTGLLGFVGPTSHSMGPVVD--------MGLLFVVGSIDETLEVSGLRHNPDDIEATV 472
Query: 1669 MRAHKKI--AECAVFTWTNLLVVVVELDGNESEALDLVPLVTNAVLEEHHLIVGVAVVVD 1726
+R H I AVF+ T +VVV E G+E E+ VP V NA+L EH +IV V +V
Sbjct: 473 LRVHPMIYRGRIAVFSVTERVVVVAEQRGSEEESFQWVPRVLNAILSEHQVIVYVVALVP 532
Query: 1727 PGVVPINSRGEKQRMHLRDGFLAD 1750
PG +P GEKQR R FL
Sbjct: 533 PGTLPKTPLGEKQRSETRASFLEG 556
Score = 149 bits (378), Expect = 2e-37
Identities = 51/114 (44%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 1005 HDAVFVVGALDETIMLRGMRYHPIDIENSVMRAHKKI--AECAVFTWTNLLVVVVELDGN 1062
+FVVG++DET+ + G+R++P DIE +V+R H I AVF+ T +VVV E G+
Sbjct: 443 MGLLFVVGSIDETLEVSGLRHNPDDIEATVLRVHPMIYRGRIAVFSVTERVVVVAEQRGS 502
Query: 1063 ESEALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 1116
E E+ VP V NA+L EH +IV V +V PG +P GEKQR R FL
Sbjct: 503 EEESFQWVPRVLNAILSEHQVIVYVVALVPPGTLPKTPLGEKQRSETRASFLEG 556
Score = 97.6 bits (243), Expect = 1e-20
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 14/114 (12%)
Query: 798 NSKGSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGA 857
+ G LT +L RA ++ LL++ I GD V L++P D I AFYGCLY G
Sbjct: 1 DGNGKPLYTLTYGKLWSRAAKIAYALLKKLGIKPGDRVVLVYPDPEDFIAAFYGCLYAGL 60
Query: 858 VPVTIRPPH----PQNLQTTLPTHQFISEI---------LK-WRAASTSEHVIF 897
+PV + PP Q + L + + + LK R+ +T E + F
Sbjct: 61 IPVPVEPPLSRAGSQQVGALLGSIKHYCGVAVALTSEACLKGLRSKTTGEILKF 114
Score = 71.4 bits (175), Expect = 3e-12
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 901 NSKGSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCL 956
+ G LT +L RA ++ LL++ I GD V L++P D I AFYGCL
Sbjct: 1 DGNGKPLYTLTYGKLWSRAAKIAYALLKKLGIKPGDRVVLVYPDPEDFIAAFYGCL 56
Score = 62.2 bits (151), Expect = 2e-09
Identities = 20/52 (38%), Positives = 24/52 (46%)
Query: 1123 IWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTS 1174
IWV S NA+ Y+ L G + F G Y RTG LGF+ TS
Sbjct: 383 IWVNSSANATSYYGLTGMTKNTFEVFPNSSSDGIGENPYVRTGLLGFVGPTS 434
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the
class I adenylate forming enzyme family and is homologous
to fatty acyl-coenzyme A (CoA) ligases (FACLs). However,
FAALs produce only the acyl adenylate and are unable to
perform the thioester-forming reaction, while FACLs
perform a two-step catalytic reaction; AMP ligation
followed by CoA ligation using ATP and CoA as cofactors.
FAALs have insertion motifs between the N-terminal and
C-terminal subdomains that distinguish them from the
FACLs. This insertion motif precludes the binding of CoA,
thus preventing CoA ligation. It has been suggested that
the acyl adenylates serve as substrates for
multifunctional polyketide synthases to permit synthesis
of complex lipids such as phthiocerol dimycocerosate,
sulfolipids, mycolic acids, and mycobactin.
Length = 547
Score = 257 bits (660), Expect = 4e-74
Identities = 154/578 (26%), Positives = 245/578 (42%), Gaps = 63/578 (10%)
Query: 1190 VDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGA 1249
D + LT ++L +RA + A L GD V L+ PPG+D + AF+GCLY GA
Sbjct: 15 FDDDDEEETLTYAELDRRARAIAARLQALGA--PGDRVLLLAPPGLDFVAAFFGCLYAGA 72
Query: 1250 VPVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTIL 1309
+ V PP L L + I+ + + VL+ V+ L++ A+ +
Sbjct: 73 IAVPAPPPRR--LGRHLARLAAILADAGARAVLTTSAVLAALRAALAAPAALLLLLIAAD 130
Query: 1310 DTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYP 1369
D + P + +A+L ++ +TG G+ ++H + + R++ A L P
Sbjct: 131 DLAALAAA--DWRPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRAIARAFGLDP 188
Query: 1370 SRHIALCLDPY--CGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTF 1427
L Y GL L L +Y+G +L+ P P WL A+S+YR +
Sbjct: 189 DDVGVSWLPLYHDMGLIGGL--LQPLYAGFPVVLMSPLAFLRRPLRWLEAISRYRATVSG 246
Query: 1428 C---SYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTS--AFSKLFSA 1482
+Y +LC + + + + L R AE + + F++ F+
Sbjct: 247 APNFAY---DLCVR----RVRDEQLAGLDLSSWRVAFNGAE---PVRADTLERFAERFAP 296
Query: 1483 LGLSPRAVSTSFG---CRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLC 1539
G P A +G + ++ G P + VD AL ++ +
Sbjct: 297 AGFRPEAFLPCYGLAEATLAVSG---GPPGAGPVVLRVDRDALARGGAAVAAADGAAARE 353
Query: 1540 LLESGKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSAR 1599
L+ G+ LPG +V I +PET+ D +GEIWV+ P A+GY+ A+ F AR
Sbjct: 354 LVSCGRPLPGHEVRIVDPETRRPLPDGEVGEIWVRGPSVAAGYW---NRPEATAETFGAR 410
Query: 1600 LVTGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDAVFVVGALDETIMLRGMRY 1659
L T G + RTG LGFL ++V G L + I++RG +
Sbjct: 411 LATDEGG--WLRTGDLGFLHD-------------------GELYVTGRLKDLIIIRGRNH 449
Query: 1660 HPIDIENSVMRAHKKIAECAVFTWTNL------LVVVVELDGNES--EALDLVPLVTNAV 1711
+P DIE +V RAH + A ++ LVVV E+ + L + AV
Sbjct: 450 YPQDIEATVERAHPALRPGAAAAFSVDGDGEERLVVVAEVRRRGLPADLAALAEAIRAAV 509
Query: 1712 LEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 1749
EH + V+V PG +P S G+ QR R+ +LA
Sbjct: 510 AREHGVAPADVVLVRPGTLPKTSSGKIQRRACRELYLA 547
Score = 232 bits (593), Expect = 3e-65
Identities = 155/565 (27%), Positives = 234/565 (41%), Gaps = 50/565 (8%)
Query: 112 TLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAG 171
TLTY +L R+ +A L + GDR+ L+ P ++F+ AF+GC++AG
Sbjct: 23 TLTYAELDRRARAIAARLQ---------ALGAPGDRVLLLAPPG--LDFVAAFFGCLYAG 71
Query: 172 IVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKLT 231
+ VP P R ++ +L + LT+ A L L A
Sbjct: 72 AIAVPAPPP-RRLGRHLARLAAILADAGARAVLTTSAVLAALRAALAAPAALLLLL---- 126
Query: 232 WFVTEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACH 291
+ A DW P P D A+++YT+ G+ GV VT +L++ RA+ +A
Sbjct: 127 IAADDLAALAAADWRP-PPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRAIARAFG 185
Query: 292 YTEGENMVCVL----DFKRETGLWHSVLTSVLNGMHAVYI-PYALMKVNPASWMQMITKY 346
+ V L D GL +L + G V + P A ++ P W++ I++Y
Sbjct: 186 LDPDDVGVSWLPLYHDM----GLIGGLLQPLYAGFPVVLMSPLAFLR-RPLRWLEAISRY 240
Query: 347 RASVAVVKSRDLHWGLLATK----DHKDISLSSLRLLLVGDGANPWSLSSCDQFLSVFQS 402
RA+V+ + + L + + LSS R+ GA P + ++F F
Sbjct: 241 RATVSGAP--NFAYDLCVRRVRDEQLAGLDLSSWRVAFN--GAEPVRADTLERFAERFAP 296
Query: 403 KGLRPDAICPCASSSEC-LTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSL 461
G RP+A PC +E L VS PG V + L+ G V + +
Sbjct: 297 AGFRPEAFLPCYGLAEATLAVSGGPPGAGPVVLR----VDRDALARGGAAVAAADGAAAR 352
Query: 462 TLQDCGQVMPGCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTP 521
L CG+ +PG + +V ++ EVGEI V + YW P + TF
Sbjct: 353 ELVSCGRPLPGHEVRIVDPET-RRPLPDGEVGEIWVRGPSVAAGYWNRPEATAETF---- 407
Query: 522 LLADGTALSQDTYTRSGLLGFLGPGGLVFVCGSRDGLMTVTGRKHNADDIIATVLAVEPM 581
A + + R+G LGFL G L +V G L+ + GR H DI ATV P
Sbjct: 408 --GARLATDEGGWLRTGDLGFLHDGEL-YVTGRLKDLIIIRGRNHYPQDIEATVERAHP- 463
Query: 582 KFIYRGRIAVFSIRVLRDERICVIAEQRPDCSEEESFQWMSRVLQAVDSIHQVGLYCLAL 641
+ G A FS+ +ER+ V+AE R + + AV H V + L
Sbjct: 464 -ALRPGAAAAFSVDGDGEERLVVVAEVRRRGLPADLAALAEAIRAAVAREHGVAPADVVL 522
Query: 642 VPPNYLPKTPLGGIHLSECKRRFLE 666
V P LPKT G I C+ +L
Sbjct: 523 VRPGTLPKTSSGKIQRRACRELYLA 547
Score = 81.9 bits (203), Expect = 1e-15
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 783 WRAASTSEHVIFTLLNSKGSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPG 842
RAA+ + +T L + LT ++L +RA + A L GD V L+ PPG
Sbjct: 1 ARAAAQPDAR-YTFLFDDDDEEETLTYAELDRRARAIAARLQALGA--PGDRVLLLAPPG 57
Query: 843 IDLICAFYGCLYVGAVPVTIRPPHPQ 868
+D + AF+GCLY GA+ V PP
Sbjct: 58 LDFVAAFFGCLYAGAIAVPAPPPRRL 83
Score = 64.1 bits (157), Expect = 5e-10
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 886 WRAASTSEHVIFTLLNSKGSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPG 945
RAA+ + +T L + LT ++L +RA + A L GD V L+ PPG
Sbjct: 1 ARAAAQPDAR-YTFLFDDDDEEETLTYAELDRRARAIAARLQALGA--PGDRVLLLAPPG 57
Query: 946 IDLICAFYGCL 956
+D + AF+GCL
Sbjct: 58 LDFVAAFFGCL 68
Score = 63.0 bits (154), Expect = 9e-10
Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 9/121 (7%)
Query: 1004 LHD-AVFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTNL------LVVV 1056
LHD ++V G L + I++RG ++P DIE +V RAH + A ++ LVVV
Sbjct: 427 LHDGELYVTGRLKDLIIIRGRNHYPQDIEATVERAHPALRPGAAAAFSVDGDGEERLVVV 486
Query: 1057 VELDGNES--EALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFL 1114
E+ + L + AV EH + V+V PG +P S G+ QR R+ +L
Sbjct: 487 AEVRRRGLPADLAALAEAIRAAVAREHGVAPADVVLVRPGTLPKTSSGKIQRRACRELYL 546
Query: 1115 A 1115
A
Sbjct: 547 A 547
Score = 44.9 bits (107), Expect = 4e-04
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 1123 IWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLR 1171
IWV+ P A+GY+ A+ F ARL T G + RTG LGFL
Sbjct: 385 IWVRGPSVAAGYW---NRPEATAETFGARLATDEGG--WLRTGDLGFLH 428
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large N-terminal
subdomain and a smaller C-terminal subdomain.
Length = 338
Score = 155 bits (393), Expect = 4e-41
Identities = 95/405 (23%), Positives = 144/405 (35%), Gaps = 72/405 (17%)
Query: 256 PAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFKRETGLWHSVL 315
PA+I YT+ G GV ++ +L++ +AL QA TEG+ ++ VL G +L
Sbjct: 2 PAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGLL 61
Query: 316 TSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKDHKDISLSS 375
++L G V P S++++I +YR +V L + + LSS
Sbjct: 62 GALLAGGTVVLYEGFPF---PLSFLELIEQYRVTVLFGVPTLYDA-LAKAAEDRGYDLSS 117
Query: 376 LRLLLVGDGANPWSLSSCDQFLSVFQSKGLRPDAICPCASSSECLTVSVRRPGRAGVNAT 435
LRLL+ G P S ++F
Sbjct: 118 LRLLISGGE--PLSPELLERFEERP----------------------------------- 140
Query: 436 GRGVLSMSGLSYGVVRVDQENSLTSLTL-QDCGQVMPGCIMTVVKMDSPSYLCKTDEVGE 494
G +L GL+ V V N + L G+ +PG + VV D EVGE
Sbjct: 141 GAPILEGYGLTETSV-VTSTNPDSELKKPGTVGRPVPGVEVRVV--DEEGKPLPPGEVGE 197
Query: 495 ICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGFLGPGGLVFVCGS 554
+ V YW P A ++D + R+G LG+L G +++ G
Sbjct: 198 LVVRGPWVMKGYWNNP------------PETTAAATEDGWYRTGDLGYLDEEGYLYITGR 245
Query: 555 RDGLMTVTGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIRV-LRDERICVIAEQRP--D 611
L+ V G ++ + +L + AV + R ERI RP D
Sbjct: 246 SKDLIKVGGENVYPAEVESVLLQHPAVA-----EAAVVGVPDEDRGERIVAFVVLRPGAD 300
Query: 612 CSEEESFQWMSRVLQAVDSIHQVGLYCLALVPPNYLPKTPLGGIH 656
EE + L + V LPKT G I
Sbjct: 301 ALAEELKAHLRERL---APYKVPRVIE--FVDE--LPKTASGKID 338
Score = 75.8 bits (187), Expect = 3e-14
Identities = 72/371 (19%), Positives = 127/371 (34%), Gaps = 85/371 (22%)
Query: 1331 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVL 1390
A++ ++ TTG G+ +SH + + +++ A L + L + +G +L
Sbjct: 2 PAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGLL 61
Query: 1391 SSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKAR 1450
++ +G +L P +L + QYRV +GV P L
Sbjct: 62 GALLAGGTVVLYEGFP---FPLSFLELIEQYRVT---VLFGV------------PTLYDA 103
Query: 1451 NIALGCVRTCVVVAEERPRIHLTSAFSKLFSALGLSP---RAVSTSFGCRVNIAICLQGA 1507
+ A E L+S + LSP G + G
Sbjct: 104 ----------LAKAAEDRGYDLSSLRLLISGGEPLSPELLERFEERPGAPILEGY---GL 150
Query: 1508 SSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLPGVKVIIANPETKGQCGDSH 1567
+ E S V + P + G+ +PGV+V + + E K
Sbjct: 151 T--ETSVV-TSTNPDSELK-------KPGT-----VGRPVPGVEVRVVDEEGKP-LPPGE 194
Query: 1568 LGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVA 1627
+GE+ V+ P GY + + E T + + RTG LG+L G
Sbjct: 195 VGELVVRGPWVMKGY---WNNPPETTAAA--------TEDGWYRTGDLGYLD---EEGY- 239
Query: 1628 GAPVPPGVSKLHDAVFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVF-----T 1682
+++ G + I + G +P ++E+ ++ H +AE AV
Sbjct: 240 --------------LYITGRSKDLIKVGGENVYPAEVESVLL-QHPAVAEAAVVGVPDED 284
Query: 1683 WTNLLVVVVEL 1693
+V V L
Sbjct: 285 RGERIVAFVVL 295
Score = 40.4 bits (95), Expect = 0.007
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 1008 VFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVF-----TWTNLLVVVVEL 1059
+++ G + I + G +P ++E+ ++ H +AE AV +V V L
Sbjct: 240 LYITGRSKDLIKVGGENVYPAEVESVLL-QHPAVAEAAVVGVPDEDRGERIVAFVVL 295
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 157 bits (398), Expect = 5e-41
Identities = 102/492 (20%), Positives = 179/492 (36%), Gaps = 91/492 (18%)
Query: 1200 TCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPHP 1259
T +L +RA R+ A L + GD VA++ P + + A L GA V + P P
Sbjct: 1 TYRELDERANRLAAALRALG-VGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLP 59
Query: 1260 QNLQTTLPTVRMIVDVSKSVLVLSNQN--------VIKLLKSKEASNVVDIKSWPTILDT 1311
+ I++ S++ +++++ ++KLL V D +LD
Sbjct: 60 A------ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEGLDLLDD 113
Query: 1312 DDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSR 1371
+ + + LAY+ ++ TTG G+ ++H + +L + L P
Sbjct: 114 ELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGLTPGD 173
Query: 1372 HIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYG 1431
+ L L P G + + +G +L+P ++PA L + +Y+V +
Sbjct: 174 RVLLLL-PLHFDGSVWEIFGPLLAGGTLVLVPKF--TLDPARLLDLIEKYKVTVLYGVPT 230
Query: 1432 VMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALGLSPRAVS 1491
++ L K + + L +R + E P +L G P +
Sbjct: 231 LLRLLLK-------APEEKKYDLSSLRLVLSGGEPLPP----ELLRRLRERFGGVP--LV 277
Query: 1492 TSFG---CRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLP 1548
+G V L G +P + G+ LP
Sbjct: 278 NGYGPTETTVVATANLPGDPEVKPGSI----------------------------GRPLP 309
Query: 1549 GVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGEL 1608
GV+V + + E + +GE+ ++ P A GY D A++F G
Sbjct: 310 GVEVKVLDEEGE-PVPPGEVGELCIRGPGVARGY---LNDPELTAERFVED------GWG 359
Query: 1609 YARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDAVFVVGALDETIMLRGMRYHPIDIENSV 1668
RTG LG G + ++G D+ + +RG R P +IE V
Sbjct: 360 MYRTGDLGRWD------------EDGY------LEILGRKDDQVKIRGERIEPGEIEA-V 400
Query: 1669 MRAHKKIAECAV 1680
+ H +AE AV
Sbjct: 401 LLEHPGVAEAAV 412
Score = 112 bits (282), Expect = 6e-26
Identities = 102/469 (21%), Positives = 166/469 (35%), Gaps = 94/469 (20%)
Query: 114 TYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAGIV 173
TY +L R+ ++A L + GDR+A++ PN+ ++ A + AG
Sbjct: 1 TYRELDERANRLAAALR--------ALGVGPGDRVAILLPNS--PEWVVAILAVLKAGAA 50
Query: 174 PVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVV-----AFKGWP 228
VP++ L ++ ++L + +V +T D L L + +V
Sbjct: 51 YVPLDPSLPAE-----RLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDG 105
Query: 229 KLTWFVTEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSV---MGVTVTRAAMLSHCRA 285
+ + + L P P + D AYI YT+ G+ GV +T +L+
Sbjct: 106 EGLDLLDDELLAGASAEPPAPPVDPDDLAYIIYTS---GTTGKPKGVMLTHRNLLALAAG 162
Query: 286 LTQACHYTEGENMVCVLD--FKRETGLWHSVLTSVLNGMHAVYIPYALMKVNPASWMQMI 343
L + T G+ ++ +L F G + +L G V +P + +PA + +I
Sbjct: 163 LAERFGLTPGDRVLLLLPLHF---DGSVWEIFGPLLAGGTLVLVPKFTL--DPARLLDLI 217
Query: 344 TKYRASVAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGANPWSLSSCDQFLSVFQSK 403
KY+ +V L LL + K LSSLRL+L G P + F
Sbjct: 218 EKYKVTVLYGVPTLLR-LLLKAPEEKKYDLSSLRLVLS--GGEPLPPELLRRLRERF--- 271
Query: 404 GLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTL 463
G P + +E V+ G
Sbjct: 272 GGVP--LVNGYGPTETTVVATANLPGDPEVKPGS-------------------------- 303
Query: 464 QDCGQVMPGCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLL 523
G+ +PG + V+ D EVGE+C+ G Y P L+ F +
Sbjct: 304 --IGRPLPGVEVKVL--DEEGEPVPPGEVGELCIRGPGVARGYLNDPELTAERF-----V 354
Query: 524 ADGTALSQDTYTRSGLLGFLGPGGLVFVCGSRDGLMTVTGRKHNADDII 572
DG R+G LG DG + + GRK DD +
Sbjct: 355 EDG-----WGMYRTGDLGRWDE----------DGYLEILGRK---DDQV 385
Score = 60.8 bits (148), Expect = 3e-09
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 808 TCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPHP 867
T +L +RA R+ A L + GD VA++ P + + A L GA V + P P
Sbjct: 1 TYRELDERANRLAAALRALG-VGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLP 59
Query: 868 Q 868
Sbjct: 60 A 60
Score = 45.8 bits (109), Expect = 2e-04
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 911 TCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCL 956
T +L +RA R+ A L + GD VA++ P + + A L
Sbjct: 1 TYRELDERANRLAAALRALG-VGPGDRVAILLPNSPEWVVAILAVL 45
Score = 39.2 bits (92), Expect = 0.015
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 1008 VFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAV 1046
+ ++G D+ + +RG R P +IE V+ H +AE AV
Sbjct: 375 LEILGRKDDQVKIRGERIEPGEIEA-VLLEHPGVAEAAV 412
Score = 31.5 bits (72), Expect = 3.9
Identities = 19/86 (22%), Positives = 25/86 (29%), Gaps = 30/86 (34%)
Query: 1088 AVVVDPG--VVPINSRGEKQRMHLRDGFLADQLDPIYIWVQSPHNASGYFSLYGDESEYA 1145
V+D VP GE + ++ P A GY D A
Sbjct: 313 VKVLDEEGEPVPPGEVGE-------------------LCIRGPGVARGY---LNDPELTA 350
Query: 1146 QQFSARLVTGNTGELYARTGYLGFLR 1171
++F G RTG LG
Sbjct: 351 ERFVED------GWGMYRTGDLGRWD 370
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a
family of nonribosomal peptide synthetases (NRPSs)
synthesizing toxins and antitumor agents. The
adenylation (A) domain of NRPS recognizes a specific
amino acid or hydroxy acid and activates it as an
(amino)-acyl adenylate by hydrolysis of ATP. The
activated acyl moiety then forms a thioester to the
enzyme-bound cofactor phosphopantetheine of a peptidyl
carrier protein domain. This family includes NRPSs that
synthesize toxins and antitumor agents; for example,
TubE for Tubulysine, CrpA for cryptophycin, TdiA for
terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for
Valinomycin. Nonribosomal peptide synthetases are large
multifunctional enzymes which synthesize many
therapeutically useful peptides. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and, in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 560
Score = 148 bits (376), Expect = 5e-37
Identities = 146/625 (23%), Positives = 233/625 (37%), Gaps = 94/625 (15%)
Query: 72 SLVVPSGLPRNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLT 131
L +P G PR LE A+QR + T +D +G +Y +LL + ++ L
Sbjct: 1 PLPLPPGAPRTLEEALQR-AAEHAPGRGITYIDADGS-EEFQSYAELLEEAERILAGLR- 57
Query: 132 KPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAGIVPVPIEVPLTRRDAGSQ-- 189
LK GD + L N+ +F+ AF+ C+ G VPVP+ VP T + +
Sbjct: 58 -------ALGLKPGDSVILQLERNE--DFVTAFWACVLGGFVPVPVAVPPTYDEPNAAVA 108
Query: 190 ---QIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKLTWFVTEHLAKTPKDWA 246
I LLGS V LT A + L G L E L P D A
Sbjct: 109 KLRNIWELLGSP---VILTDAALVAALAGLRTRA-----GLEALRVLAIEELRSAPPD-A 159
Query: 247 PQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFKR 306
P D PA + T+ G V +T +L+ Q +T + + +
Sbjct: 160 PLHPARPDDPALLLLTSGSTGVPKCVVLTHRNILARSAGTVQVNGFTPDDVSLNWMPLDH 219
Query: 307 ETGLWHSVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASV------AVVKSRDLHW 360
G+ L V G +++P + +P W+ +I +YR ++ A D
Sbjct: 220 VGGIVMLHLRDVYLGCQQIHVPTDYILADPLRWLDLIDRYRVTITWAPNFAFALLND--- 276
Query: 361 GLLATKDHKDISLSSLRLLLVGDGANPWSLSSCDQFLSVFQSKGLRPDAICPC---ASSS 417
L + + LSSLR ++ A + +FL + GL DAI P + +
Sbjct: 277 -ALERIEDRSWDLSSLRYIINAGEAV--VAKTIRRFLELLAPYGLPADAIRPAFGMSETC 333
Query: 418 ECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQVMPGCIMTV 477
+T S R L + + + G+ +PG + +
Sbjct: 334 SGVTYS-RGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVE-----LGRPIPGVAIRI 387
Query: 478 VKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRS 537
V D L EVG + V S Y+ P + F DG + R+
Sbjct: 388 VDEDGA--LLPEGEVGRLQVRGPTVTSGYYRNPEANAEAF-----TEDG-------WFRT 433
Query: 538 GLLGFLGPGGLVFVCGSRDGLMTVTGRKHNADDII---ATVL------AVEPMKFIYRGR 588
G LGFL DG +T+TGR+ D II AVE + +
Sbjct: 434 GDLGFL-----------HDGRLTITGRE--KDMIIINGVNYYNHEIEAAVEQVPGVEPSF 480
Query: 589 IAVFSIRVLRD--ERICVIAEQRPDCSEEESFQWMSRVLQAVDS--IHQVGLYCLALVP- 643
A ++R + + V R D + ++ +L+A+ + ++G+ ++P
Sbjct: 481 TAACAVRDAGSGTDELAVFFVPRYDLDDR-----LAALLRAIRTHVARKIGIAPAYVIPL 535
Query: 644 -PNYLPKTPLGGIHLSECKRRFLEG 667
PKT LG I ++ ++RF G
Sbjct: 536 AKEDFPKTSLGKIQRAQLRKRFEAG 560
Score = 100 bits (251), Expect = 2e-21
Identities = 117/586 (19%), Positives = 219/586 (37%), Gaps = 79/586 (13%)
Query: 1186 GVSSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCL 1245
G++ +D + + + ++L + AER+ A L + GD V L D + AF+ C+
Sbjct: 27 GITYIDADGSEEFQSYAELLEEAERILAGLRAL-GLKPGDSVILQLERNEDFVTAFWACV 85
Query: 1246 YVGAVPVTIRPPHPQNLQTTLPTVRMIVDVSK---SVLVLSNQNVIKLLKSKEASNVVDI 1302
G VPV + P V + ++ + S ++L++ ++ L +
Sbjct: 86 LGGFVPVPVAVPP--TYDEPNAAVAKLRNIWELLGSPVILTDAALVAALA--GLRTRAGL 141
Query: 1303 KSWPTILDTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMK 1362
++ +L +++ A + A L + +TG+ + ++H + +
Sbjct: 142 EA-LRVLAIEELRSAPPDAPLHPARPDDPALLLLTSGSTGVPKCVVLTHRNILARSAGTV 200
Query: 1363 LACELYPSRHIALC---LDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVS 1419
+ ++L LD G+ L VY G I +P + +P WL +
Sbjct: 201 QVNG-FTPDDVSLNWMPLDHVGGIVM--LHLRDVYLGCQQIHVPTDYILADPLRWLDLID 257
Query: 1420 QYRVRDTFC---SYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAF 1476
+YRV T+ ++ + L+ ++ +++ R+ L +R ++ A E F
Sbjct: 258 RYRVTITWAPNFAFAL-------LNDALERIEDRSWDLSSLR-YIINAGEAVVAKTIRRF 309
Query: 1477 SKLFSALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPH 1536
+L + GL A+ +FG + L + P
Sbjct: 310 LELLAPYGLPADAIRPAFGMSETCSGVTYSRGFRTGPDTGGVLVDSLTGPLRFAAADHPE 369
Query: 1537 SLCLLESGKLLPGVKVIIAN------PETKGQCGDSHLGEIWVQSPHNASGYFSLYGDES 1590
++ +E G+ +PGV + I + PE +G + V+ P SGY Y +
Sbjct: 370 AVTFVELGRPIPGVAIRIVDEDGALLPEG-------EVGRLQVRGPTVTSGY---YRNPE 419
Query: 1591 EYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDAVFVVGALDE 1650
A+ F T + + RTG LGFL G G K +
Sbjct: 420 ANAEAF--------TEDGWFRTGDLGFLHD-------GRLTITGREK------------D 452
Query: 1651 TIMLRGMRYHPIDIENSVMRAH----KKIAECAVF---TWTNLLVV--VVELDGNESEAL 1701
I++ G+ Y+ +IE +V + A CAV + T+ L V V D +
Sbjct: 453 MIIINGVNYYNHEIEAAVEQVPGVEPSFTAACAVRDAGSGTDELAVFFVPRYD-LDDRLA 511
Query: 1702 DLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGF 1747
L+ + V + + + + P S G+ QR LR F
Sbjct: 512 ALLRAIRTHVARKIGIAPAYVIPLAKEDFPKTSLGKIQRAQLRKRF 557
Score = 45.4 bits (108), Expect = 3e-04
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 779 EILKWRAASTSEHVIFTLLNSKGSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALI 838
E L+ RAA + T +++ GS + + ++L + AER+ A L + GD V L
Sbjct: 14 EALQ-RAAEHAPGRGITYIDADGSE-EFQSYAELLEEAERILAGLRAL-GLKPGDSVILQ 70
Query: 839 FPPGIDLICAFYGCLYVGAVPVTIRPPH 866
D + AF+ C+ G VPV + P
Sbjct: 71 LERNEDFVTAFWACVLGGFVPVPVAVPP 98
Score = 36.5 bits (85), Expect = 0.14
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 864 PPHPQNLQTTLPTHQFISEILKWRAASTSEHVIFTLLNSKGSAAQLLTCSQLHKRAERVG 923
P P TL E L+ RAA + T +++ GS + + ++L + AER+
Sbjct: 2 LPLPPGAPRTLE------EALQ-RAAEHAPGRGITYIDADGSE-EFQSYAELLEEAERIL 53
Query: 924 ALLLERAKINTGDHVALIFPPGIDLICAFYGCL 956
A L + GD V L D + AF+ C+
Sbjct: 54 AGLRAL-GLKPGDSVILQLERNEDFVTAFWACV 85
>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated.
Length = 579
Score = 148 bits (375), Expect = 7e-37
Identities = 147/582 (25%), Positives = 229/582 (39%), Gaps = 59/582 (10%)
Query: 104 DPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCA 163
D G+L L Y L +R+ A LL LK GDR+AL+ D +F+ A
Sbjct: 41 DRRGQLEEALPYQTLRARAEAGARRLLA--------LGLKPGDRVALI-AETDG-DFVEA 90
Query: 164 FYGCIFAGIVPVPIEVP--LTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEV 221
F+ C +AG+VPVP+ +P R++ Q+ +L S +T D L A
Sbjct: 91 FFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDE-LLPWVNEATH-- 147
Query: 222 VAFKGWPKLTWFVTEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSV---MGVTVTRAA 278
L+ P+ PR T D AY++Y++ GS GV +T A
Sbjct: 148 -GNPLLHVLSH---AWFKALPEADVALPRPTPDDIAYLQYSS---GSTRFPRGVIITHRA 200
Query: 279 MLSHCRALTQ-ACHYTEGENMVCVLDFKRETGLWHSVLTSVLNGMHAVYIPYALMKVNPA 337
++++ RA++ G+ V L F + GL +LT V + Y+P P
Sbjct: 201 LMANLRAISHDGLKVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPL 260
Query: 338 SWMQMITKYRASVAVVKS--RDLHWGLLATKDHKDISLSSLRLLLVGDGANPWSLSSCDQ 395
W+ +I++ R +++ +L + +KD ++ LS R + G GA+ Q
Sbjct: 261 QWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWR--VAGIGADMIRPDVLHQ 318
Query: 396 FLSVFQSKGLRPDAICPCASSSEC-LTVSVRRPGR-AGVNATGRGVLSMSGLSYGVVRVD 453
F F G A P +E L VS G V R L G +
Sbjct: 319 FAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAP---- 374
Query: 454 QENSLTSLTLQDCGQVMPGCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLS 513
+ T +CG+ +PG + + + VG ICV S Y+
Sbjct: 375 GAETRRVRTFVNCGKALPGHEIEIR--NEAGMPLPERVVGHICVRGPSLMSGYFRDE--- 429
Query: 514 NTTFKVTPLLADGTALSQDTYTRSGLLGFLGPGGLVFVCGSRDGLMTVTGRKHNADDIIA 573
L+ D + +G LG+L G L + G L+ + GR DI
Sbjct: 430 ----------ESQDVLAADGWLDTGDLGYLLDGYLY-ITGRAKDLIIINGRNIWPQDI-- 476
Query: 574 TVLAVEPMKFIYRGRIAVFSIRVLRDERICVIAEQRPDCSEEESFQWMSRVLQAVDSIHQ 633
E + G A FSI E+I ++ + R EE Q + + V S
Sbjct: 477 -EWIAEQEPELRSGDAAAFSIAQENGEKIVLLVQCRIS-DEERRGQLIHALAALVRSEF- 533
Query: 634 VGLYCL-ALVPPNYLPKTPLGGIHLSECKRRFLEGNLHPANV 674
G+ LVPP+ LP+T G + ++ K+R+L G +V
Sbjct: 534 -GVEAAVELVPPHSLPRTSSGKLSRAKAKKRYLSGAFASLDV 574
Score = 80.0 bits (198), Expect = 5e-15
Identities = 125/590 (21%), Positives = 219/590 (37%), Gaps = 94/590 (15%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 1258
L L RA GA L + GD VALI D + AF+ C Y G VPV + P
Sbjct: 50 LPYQTLRARA-EAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPL--PL 106
Query: 1259 PQNL---QTTLPTVRMIVDVSKSVLVLSNQNVIKLLKS-KEASNVVDIKSWPTILDTDDM 1314
P ++ + +R ++ ++ +++ ++ + + ++ + S
Sbjct: 107 PMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNPLLHVLSH-AWFKALPE 165
Query: 1315 PKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRS-----MKLACELYP 1369
L PT + +AYL +S +T G+ ++H A+ + R+ +K + P
Sbjct: 166 ADVALP----RPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLK----VRP 217
Query: 1370 SRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFC- 1428
L Y +G ++L+ V + +P + P WL +S+ R ++
Sbjct: 218 GDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSP 277
Query: 1429 SYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALGLSPR 1488
+G ELC + ++ + L C R + A + R + F++ F+ G +
Sbjct: 278 PFG-YELCARRVNSK----DLAELDLSCWRVAGIGA-DMIRPDVLHQFAEAFAPAGFDDK 331
Query: 1489 AVSTSFG-----CRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHS-----L 1538
A S+G V+ + G E VD L ++
Sbjct: 332 AFMPSYGLAEATLAVSFSPLGSGIVVEE-----VDRDRLEYQGKAVAPGAETRRVRTFVN 386
Query: 1539 CLLESGKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSA 1598
C GK LPG ++ I N E + +G I V+ P SGYF + S
Sbjct: 387 C----GKALPGHEIEIRN-EAGMPLPERVVGHICVRGPSLMSGYF---------RDEESQ 432
Query: 1599 RLVTGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDAVFVVGALDETIMLRGMR 1658
V G L TG LG+L L +++ G + I++ G
Sbjct: 433 D-VLAADGWL--DTGDLGYL-------------------LDGYLYITGRAKDLIIINGRN 470
Query: 1659 YHPIDIENSVMRAHKKI--AECAVFTWTN----LLVVVVELDGNESEA-LDLVPLVTNAV 1711
P DIE ++ + A F+ +V++V+ ++ E L+ + V
Sbjct: 471 IWPQDIEWIA-EQEPELRSGDAAAFSIAQENGEKIVLLVQCRISDEERRGQLIHALAALV 529
Query: 1712 LEEHHLIVGVAVVVD---PGVVPINSRGEKQRMHLRDGFLADQLDPIYVA 1758
E GV V+ P +P S G+ R + +L+ + VA
Sbjct: 530 RSEF----GVEAAVELVPPHSLPRTSSGKLSRAKAKKRYLSGAFASLDVA 575
Score = 41.5 bits (98), Expect = 0.004
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 794 FTLLNSKGSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCL 853
+ +G + L L RA GA L + GD VALI D + AF+ C
Sbjct: 37 MNFYDRRGQLEEALPYQTLRARA-EAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQ 95
Query: 854 YVGAVPV 860
Y G VPV
Sbjct: 96 YAGLVPV 102
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 137 bits (347), Expect = 2e-33
Identities = 127/618 (20%), Positives = 206/618 (33%), Gaps = 97/618 (15%)
Query: 67 PAPGESLVVPSGLPRNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVA 126
+ L LE A +R A + G LTY +L R+ ++A
Sbjct: 1 ANRLMRMTAELTLASLLERAARRNPDRP-----ALIFLGRGG---RLTYRELDRRANRLA 52
Query: 127 YTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAGIVPVPIEVPLTRRDA 186
L +K GDR+A++ PN+ FL AF + AG V VP+ LT R
Sbjct: 53 AALQ--------ALGVKPGDRVAILLPNS--PEFLIAFLAALRAGAVAVPLNPRLTPR-- 100
Query: 187 GSQQIGFLLGSCDIQVALTSDACLKGL----PKTAAGEVVAFKGWPKLTWFVTEH--LAK 240
++ ++L +V +TS L VV G +T A+
Sbjct: 101 ---ELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLPITLEALAAE 157
Query: 241 TPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQAC--HYTEGENM 298
P A + D A++ YT+ G GV +T +L++ + A T + +
Sbjct: 158 GPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVV 217
Query: 299 VCVLDFKRETGLWHSVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDL 358
+ L GL +L +L G V + W+ K V
Sbjct: 218 LSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVP---TF 274
Query: 359 HWGLLATKDHKDISLSSLRLLLVGDGANPWSLSSCDQFLSVFQSKGLRPDAICPCASSSE 418
LL + D LSS L++ G P ++F F P AI +E
Sbjct: 275 LRELLDNPEKDDDDLSSSLRLVLS-GGAPLPPELLERFEERFG-----PIAILEGYGLTE 328
Query: 419 CLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQVMPGCIMTVV 478
V P + G G+ +PG + +V
Sbjct: 329 TSPVVTINPPDDLLAKPGSV----------------------------GRPLPGVEVRIV 360
Query: 479 KMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSG 538
D EVGEI V YW P + F +D + R+G
Sbjct: 361 --DPDGGEVLPGEVGEIWVRGPNVMKGYWNRPEATAEAFD------------EDGWLRTG 406
Query: 539 LLGFLGPGGLVFVCGSRDGLMTVTGRKHNADDI---IATVLAVEPMKFIYRGRIAVFSIR 595
LG++ G +++ G L+ G ++I +A AV AV +
Sbjct: 407 DLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAV--------AEAAVVGVP 458
Query: 596 VLR-DERICVIAEQRPDCSEEESFQWMSRVLQAVDSIHQVGLYCLALVPPNYLPKTPLGG 654
R ER+ + +P E + + + L+ ++++V +V + LP+T G
Sbjct: 459 DERWGERVVAVVVLKPGGDAELTAEELRAFLRKRLALYKVPRI---VVFVDELPRTASGK 515
Query: 655 IHLSECKRRFLEGNLHPA 672
I + +
Sbjct: 516 IDRRALREEYRAEPRLDL 533
Score = 128 bits (323), Expect = 1e-30
Identities = 123/575 (21%), Positives = 210/575 (36%), Gaps = 104/575 (18%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 1258
LT +L +RA R+ A L + GD VA++ P + + AF L GAV V + P
Sbjct: 39 LTYRELDRRANRLAAALQALG-VKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPR- 96
Query: 1259 PQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDMPKKK 1318
T + I++ + + +++++ LL+ A + + + D DD
Sbjct: 97 -----LTPRELAYILNDAGAKVLITSAEFAALLE-AVAEALPVVLVVLLVGDADDRLPIT 150
Query: 1319 LAAL----------YRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELY 1368
L AL R + LA+L ++ TTG+ G+ ++H + + + A
Sbjct: 151 LEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGG 210
Query: 1369 PSRH--IALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDT 1426
+ + L + G + +L+ + G +L+ P + LWL + +Y+V
Sbjct: 211 LTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWL--IEKYKVT-- 266
Query: 1427 FCSYGV----MELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSA 1482
GV EL K + +R + L F + F
Sbjct: 267 -VLSGVPTFLRELLDN-------PEKDDDDLSSSLRLV-LSGGAPLPPELLERFEERF-- 315
Query: 1483 LGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLE 1542
P A+ +G +SP + D + V
Sbjct: 316 ---GPIAILEGYG---------LTETSPVVTINPPDDLLAKPGSV--------------- 348
Query: 1543 SGKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVT 1602
G+ LPGV+V I +P+ GEIWV+ P+ GY + A+ F
Sbjct: 349 -GRPLPGVEVRIVDPDGGEVLPGEV-GEIWVRGPNVMKGY---WNRPEATAEAF------ 397
Query: 1603 GNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDAVFVVGALDETIMLRGMRYHPI 1662
+ + RTG LG++ G +++VG L + I+ G +P
Sbjct: 398 --DEDGWLRTGDLGYV---DEDGY---------------LYIVGRLKDLIISGGENIYPE 437
Query: 1663 DIENSVMRAHKKIAECAVF-----TWTNLLVVVVELDGNESEALDLVPLVTNAVLEEHHL 1717
+IE V+ H +AE AV W +V VV L L L + + L
Sbjct: 438 EIEA-VLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELTAEEL-RAFLRKRLAL 495
Query: 1718 IVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQL 1752
+VV +P + G+ R LR+ + A+
Sbjct: 496 YKVPRIVVFVDELPRTASGKIDRRALREEYRAEPR 530
Score = 63.2 bits (154), Expect = 7e-10
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 777 ISEILKWRAASTSEHVIFTLLNSKGSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVA 836
++ +L+ A + L G LT +L +RA R+ A L + GD VA
Sbjct: 13 LASLLERAARRNPDRPALIFLGRGGR----LTYRELDRRANRLAAALQALG-VKPGDRVA 67
Query: 837 LIFPPGIDLICAFYGCLYVGAVPVTIRPP 865
++ P + + AF L GAV V + P
Sbjct: 68 ILLPNSPEFLIAFLAALRAGAVAVPLNPR 96
Score = 47.5 bits (113), Expect = 5e-05
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 880 ISEILKWRAASTSEHVIFTLLNSKGSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVA 939
++ +L+ A + L G LT +L +RA R+ A L + GD VA
Sbjct: 13 LASLLERAARRNPDRPALIFLGRGGR----LTYRELDRRANRLAAALQALG-VKPGDRVA 67
Query: 940 LIFPPGIDLICAFYGCL 956
++ P + + AF L
Sbjct: 68 ILLPNSPEFLIAFLAAL 84
Score = 45.1 bits (107), Expect = 3e-04
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 1008 VFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVF-----TWTNLLVVVVELDGN 1062
+++VG L + I+ G +P +IE V+ H +AE AV W +V VV L
Sbjct: 417 LYIVGRLKDLIISGGENIYPEEIEA-VLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPG 475
Query: 1063 ESEALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQL 1118
L L + + L +VV +P + G+ R LR+ + A+
Sbjct: 476 GDAELTAEEL-RAFLRKRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRAEPR 530
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 136 bits (344), Expect = 1e-31
Identities = 148/588 (25%), Positives = 233/588 (39%), Gaps = 77/588 (13%)
Query: 1191 DTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAV 1250
D +L+ L RA + A L RA GD L+FP G D + AF+GCLY G +
Sbjct: 33 DDPGEGVVLSYRDLDLRARTIAAALQARASF--GDRAVLLFPSGPDYVAAFFGCLYAGVI 90
Query: 1251 PVTIRPPHP--QNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTI 1308
V PP ++ Q L + I+ ++ L+L+ ++ L E + P +
Sbjct: 91 AVPAYPPESARRHHQERLLS---IIADAEPRLLLTVADLRDSLLQMEELAAANA---PEL 144
Query: 1309 LDTDDMPKKKLAALYRAPT--AEMLAYLDFSVSTTGMLAGIKMSHA---AVTSLCRSMKL 1363
L D + LA ++ P + +A+L ++ +T + G+++SH A L R
Sbjct: 145 LCVDTLDPA-LAEAWQEPALQPDDIAFLQYTSGSTALPKGVQVSHGNLVANEQLIRH-GF 202
Query: 1364 ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 1423
+L P I L Y +G +L ++SG +L+ P+ P WL A+S+Y
Sbjct: 203 GIDLNPDDVIVSWLPLYHDMGLIGGLLQPIFSGVPCVLMSPAYFLERPLRWLEAISEYGG 262
Query: 1424 RDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERP-RIHLTSAFSKLFSA 1482
+ LC++ +S S + L R V + P R F++ F+A
Sbjct: 263 TISGGPDFAYRLCSERVSESALE------RLDLSRWRVAYSGSEPIRQDSLERFAEKFAA 316
Query: 1483 LGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLE 1542
G P + S+G G + +D AL +R GS L+
Sbjct: 317 CGFDPDSFFASYGLAEATLFVSGGRRGQGIPALELDAEALARNRAEPGT-GSV----LMS 371
Query: 1543 SGKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVT 1602
G+ PG V+I +P++ GD+ +GEIW P A GY+ + SA+
Sbjct: 372 CGRSQPGHAVLIVDPQSLEVLGDNRVGEIWASGPSIAHGYWR--------NPEASAKTFV 423
Query: 1603 GNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDAVFVVGALDETIMLRGMRYHPI 1662
+ G + RTG LGFLR +FV G L + +++RG +P
Sbjct: 424 EHDGRTWLRTGDLGFLR-------------------DGELFVTGRLKDMLIVRGHNLYPQ 464
Query: 1663 DIENSVMRAHKKIAECAVFTWTNLLVVVVELDGNE---------------SEALDLVPLV 1707
DIE +V R E V + V G E L+ +
Sbjct: 465 DIEKTVER------EVEVVRKGRVAAFAVNHQGEEGIGIAAEISRSVQKILPPQALIKSI 518
Query: 1708 TNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLDPI 1755
AV E V ++++PG +P S G+ QR R LD
Sbjct: 519 RQAVAEACQEAPSVVLLLNPGALPKTSSGKLQRSACRLRLADGSLDSY 566
Score = 104 bits (262), Expect = 3e-22
Identities = 148/607 (24%), Positives = 248/607 (40%), Gaps = 62/607 (10%)
Query: 79 LPRNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTS 138
LP L A+QR + T L + + L+Y L R+ +A L
Sbjct: 7 LPLTLVQALQRRAAQTPDRLALRFLADDPGEGVVLSYRDLDLRARTIAAAL--------- 57
Query: 139 ESSLKSGDRIALVYPNNDPINFLCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSC 198
++ GDR L++P+ +++ AF+GC++AG++ VP P + R +++ ++
Sbjct: 58 QARASFGDRAVLLFPSG--PDYVAAFFGCLYAGVIAVPAYPPESARRHHQERLLSIIADA 115
Query: 199 DIQVALTSDACLKGLPKTAAGEVVAFKGWPKLTWFVTEHLAKTPKDWAPQPRLTDDTPAY 258
+ ++ LT L E+ A L V + W +P L D A+
Sbjct: 116 EPRLLLTVADLRDSL--LQMEELAAANAPELLC--VDTLDPALAEAWQ-EPALQPDDIAF 170
Query: 259 IEYTTDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCV--LDFKRETGLWHSVLT 316
++YT+ GV V+ ++++ + + + V V L + GL +L
Sbjct: 171 LQYTSGSTALPKGVQVSHGNLVANEQLIRHGFGIDLNPDDVIVSWLPLYHDMGLIGGLLQ 230
Query: 317 SVLNGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKDHKDISLSSL 376
+ +G+ V + A P W++ I++Y +++ D + L + +S S+L
Sbjct: 231 PIFSGVPCVLMSPAYFLERPLRWLEAISEYGGTIS--GGPDFAYRLC----SERVSESAL 284
Query: 377 -RLLLVG-----DGANPWSLSSCDQFLSVFQSKGLRPDAICPCASSSEC-LTVSVRRPGR 429
RL L G+ P S ++F F + G PD+ +E L VS R G+
Sbjct: 285 ERLDLSRWRVAYSGSEPIRQDSLERFAEKFAACGFDPDSFFASYGLAEATLFVSGGRRGQ 344
Query: 430 AGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQVMPGCIMTVVKMDSPSYLCKT 489
G L + + R + T L CG+ PG + +V S L
Sbjct: 345 ------GIPALELDAEALARNRAEPG---TGSVLMSCGRSQPGHAVLIVDPQSLEVL-GD 394
Query: 490 DEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLGFLGPGGLV 549
+ VGEI + YW P S TF + DG T+ R+G LGFL G L
Sbjct: 395 NRVGEIWASGPSIAHGYWRNPEASAKTF----VEHDGR-----TWLRTGDLGFLRDGEL- 444
Query: 550 FVCGSRDGLMTVTGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIRVLRDERICVIAE-- 607
FV G ++ V G DI TV ++ + +GR+A F++ +E I + AE
Sbjct: 445 FVTGRLKDMLIVRGHNLYPQDIEKTV--EREVEVVRKGRVAAFAVNHQGEEGIGIAAEIS 502
Query: 608 ---QRPDCSEEESFQWMSRVLQAVDSIHQVGLYCLALVPPNYLPKTPLGGIHLSECKRRF 664
Q+ + + + QAV Q + L+ P LPKT G + S C+ R
Sbjct: 503 RSVQKILPPQA----LIKSIRQAVAEACQEAPSVVLLLNPGALPKTSSGKLQRSACRLRL 558
Query: 665 LEGNLHP 671
+G+L
Sbjct: 559 ADGSLDS 565
Score = 61.7 bits (150), Expect = 4e-09
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 781 LKWRAASTSEHVIFTLLNSKGSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFP 840
L+ RAA T + + L +L+ L RA + A L RA GD L+FP
Sbjct: 15 LQRRAAQTPDRLALRFLADDPGEGVVLSYRDLDLRARTIAAALQARASF--GDRAVLLFP 72
Query: 841 PGIDLICAFYGCLYVGAVPVTIRPPHPQNLQTTLPTHQ 878
G D + AF+GCLY G + V PP ++ HQ
Sbjct: 73 SGPDYVAAFFGCLYAGVIAVPAYPP-----ESARRHHQ 105
Score = 50.2 bits (120), Expect = 1e-05
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 884 LKWRAASTSEHVIFTLLNSKGSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFP 943
L+ RAA T + + L +L+ L RA + A L RA GD L+FP
Sbjct: 15 LQRRAAQTPDRLALRFLADDPGEGVVLSYRDLDLRARTIAAALQARASF--GDRAVLLFP 72
Query: 944 PGIDLICAFYGCL 956
G D + AF+GCL
Sbjct: 73 SGPDYVAAFFGCL 85
Score = 42.5 bits (100), Expect = 0.003
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 11/101 (10%)
Query: 179 VPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKLTWFVTEHL 238
VPL D ++++ ++L +++ LT L+ LP+ +A + HL
Sbjct: 1209 VPLDP-DYPAERLAYMLADSGVELLLTQSHLLERLPQAEGVSAIALD---------SLHL 1258
Query: 239 AKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAM 279
P AP L D AY+ YT+ G GV T AA+
Sbjct: 1259 DSWP-SQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAAL 1298
Score = 41.3 bits (97), Expect = 0.006
Identities = 32/132 (24%), Positives = 48/132 (36%), Gaps = 21/132 (15%)
Query: 1005 HDAVFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTNLLVVVVELDGNE- 1063
+FV G L + +++RG +P DIE +V R E V + V G E
Sbjct: 441 DGELFVTGRLKDMLIVRGHNLYPQDIEKTVER------EVEVVRKGRVAAFAVNHQGEEG 494
Query: 1064 --------------SEALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHL 1109
L+ + AV E V ++++PG +P S G+ QR
Sbjct: 495 IGIAAEISRSVQKILPPQALIKSIRQAVAEACQEAPSVVLLLNPGALPKTSSGKLQRSAC 554
Query: 1110 RDGFLADQLDPI 1121
R LD
Sbjct: 555 RLRLADGSLDSY 566
Score = 32.8 bits (75), Expect = 2.2
Identities = 40/174 (22%), Positives = 71/174 (40%), Gaps = 27/174 (15%)
Query: 1195 AAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTI 1254
A Q L+ ++L RA R+ L ER + V L ++++ L G V +
Sbjct: 2210 AGQTLSYAELDARANRLARALRERG-VGPQVRVGLALERSLEMVVGLLAILKAGGAYVPL 2268
Query: 1255 RPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDM 1314
P +P L + +++ S L+LS++ + + L A + W L+ D
Sbjct: 2269 DPEYP------LERLHYMIEDSGIGLLLSDRALFEALGELPAG----VARW--CLEDD-- 2314
Query: 1315 PKKKLAALYRAPTAEM--------LAYLDFSVSTTGMLAGIKMSHAAVTSLCRS 1360
AAL A + AYL ++ +TG G+ +SH + C++
Sbjct: 2315 ----AAALAAYSDAPLPFLSLPQHQAYLIYTSGSTGKPKGVVVSHGEIAMHCQA 2364
>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS) similar to mycosubtilin
synthase subunit A (MycA). The adenylation (A) domain
of NRPS recognizes a specific amino acid or hydroxy acid
and activates it as (amino)-acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family includes
NRPS similar to mycosubtilin synthase subunit A (MycA).
Mycosubtilin, which is characterized by a beta-amino
fatty acid moiety linked to the circular heptapeptide
Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin
family of lipopeptide antibiotics. The mycosubtilin
synthase subunit A (MycA) combines functional domains
derived from peptide synthetases, amino transferases,
and fatty acid synthases. Nonribosomal peptide
synthetases are large multifunction enzymes that
synthesize many therapeutically useful peptides. NRPS
has a distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions.
Length = 499
Score = 119 bits (301), Expect = 7e-28
Identities = 131/590 (22%), Positives = 227/590 (38%), Gaps = 120/590 (20%)
Query: 101 TVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINF 160
T ++ + K ++Y +L +R+LKV L + +K GD +V+ D +F
Sbjct: 5 TFIEGDKK-EKFISYEQLFTRALKVLGAL--------QKLGIKPGDE--VVFQIEDNEDF 53
Query: 161 LCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGE 220
+ F+ CI GI+PVP+ +D L
Sbjct: 54 IYVFWACILGGIIPVPLSYG------------------------NTDEHKLKL------- 82
Query: 221 VVAFKGWPKLTWFVTEHLAKTPKDWAPQPRLTD--DTPAYIEYTTDRDGSVMGVTVTRAA 278
+ W L P + L D A+I++++ G GV +T
Sbjct: 83 ---LRVWNIL---------NNPFLITDRDSLLSLPDDIAFIQFSSGSTGEPKGVILTHKN 130
Query: 279 MLSHCRALTQACHYTEGENMVCVLDFKRETGL--WHSVLTSVLNGMHAVYIPYALMKVNP 336
+L++ A+ +A T + + + + GL +H LT G++ +P L P
Sbjct: 131 LLTNIEAIIEAAEITSEDVFLSWMPLTHDMGLIGFH--LTPTALGINQYLMPTRLFIRRP 188
Query: 337 ASWMQMITKYRASVAVVKSRDLHWGLLATKDHKDIS--LSSLRLLLVGDGANPWSLSSCD 394
W+ +++RA++ + + L K K I LSS+RL+ +GA P S C+
Sbjct: 189 LLWLDKASQHRATILSSPNFGYKYLLKHFKTEKIIDWDLSSVRLIF--NGAEPISADLCE 246
Query: 395 QFLSVFQSKGLRPDAICPCASSSE-CLTVSVRRPG-RAGVNATGRGVLSMSGLSYGVVRV 452
+FL GLRP+A+ P +E L VS +PG R L + ++ +
Sbjct: 247 EFLEKMAPFGLRPNAMYPVYGLAEATLAVSFPKPGEPFKTVCLDRNHLKVGV---KIIEI 303
Query: 453 DQENSLTSLTLQDCGQVMPGCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGL 512
D +NS +++ + G + GC + +V D + +G I + S Y+ P
Sbjct: 304 DPKNS-DAISFVEVGSPIDGCEIRIV--DDAGEVLPDRTIGHIQIKGDNVTSGYYNNPE- 359
Query: 513 SNTTFKVTPLLADGTALSQDTYTRSGLLGFLGPGGLVFVCGSRDGLMTVTGRK------- 565
A +++ D + ++G LGFL R+G + +TGR
Sbjct: 360 -----------ATKKSITPDGWLKTGDLGFL-----------RNGRLVITGRAKDIIIVN 397
Query: 566 -HN--ADDIIATVLAVEPMKFIYRGRIAVFSIR--VLRDERICVIAEQRPDCSEEESFQW 620
N DI VE +K GR+A + + E + + E R +
Sbjct: 398 GQNYYPHDIERVAEQVEGIKL---GRVAACGVYDEKEQSEEVVIFVEYRQSLDDFTPLAL 454
Query: 621 --MSRVLQAVD-SIHQVGLYCLALVPPNYLPKTPLGGIHLSECKRRFLEG 667
V + + +I V +P +PKT G I + ++FL G
Sbjct: 455 KIKRHVNKKMGLNIDHV-------IPVRSIPKTTSGKIQRYKLAQQFLNG 497
Score = 85.0 bits (211), Expect = 9e-17
Identities = 120/587 (20%), Positives = 212/587 (36%), Gaps = 114/587 (19%)
Query: 1184 PPGVSSVDTRSAAQLLTCSQLHKRAERV-GALLLERAKINTGDHVALIFPPGIDLICAFY 1242
G++ ++ + ++ QL RA +V GAL ++ I GD V D I F+
Sbjct: 1 DRGITFIEGDKKEKFISYEQLFTRALKVLGAL--QKLGIKPGDEVVFQIEDNEDFIYVFW 58
Query: 1243 GCLYVGAVPVTIRPP--HPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVV 1300
C+ G +PV + L+ V +L +
Sbjct: 59 ACILGGIIPVPLSYGNTDEHKLKLL--------------------RVWNILNN------- 91
Query: 1301 DIKSWPTILDTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRS 1360
P ++ D L +L + +A++ FS +TG G+ ++H + + +
Sbjct: 92 -----PFLITDRDS----LLSL-----PDDIAFIQFSSGSTGEPKGVILTHKNLLTNIEA 137
Query: 1361 MKLACELYPSRHIALCLDPYC-GLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVS 1419
+ A E+ S + L P +G + L+ G + L+P P LWL S
Sbjct: 138 IIEAAEI-TSEDVFLSWMPLTHDMGLIGFHLTPTALGINQYLMPTRLFIRRPLLWLDKAS 196
Query: 1420 QYRVRDTFC-SYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERP-RIHLTSAFS 1477
Q+R ++G L K + L VR AE P L F
Sbjct: 197 QHRATILSSPNFGYKYLLKH-----FKTEKIIDWDLSSVRLIFNGAE--PISADLCEEFL 249
Query: 1478 KLFSALGLSPRAVSTSFG-CRVNIAICLQGASSPEPSCVYVDLRALR-NDRVSLVERGSP 1535
+ + GL P A+ +G +A+ P V +D L+ ++ ++ +
Sbjct: 250 EKMAPFGLRPNAMYPVYGLAEATLAVSFPKPGEP-FKTVCLDRNHLKVGVKIIEIDPKNS 308
Query: 1536 HSLCLLESGKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQ 1595
++ +E G + G ++ I + + D +G I ++ + SGY Y + +
Sbjct: 309 DAISFVEVGSPIDGCEIRIVDDAGEV-LPDRTIGHIQIKGDNVTSGY---YNNPEATKKS 364
Query: 1596 FSARLVTGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDAVFVVGALDETIMLR 1655
+ G L +TG LGFLR + + + G + I++
Sbjct: 365 ITP------DGWL--KTGDLGFLR-------------------NGRLVITGRAKDIIIVN 397
Query: 1656 GMRYHPIDIENSVMRAHK------KIAECAVFTWTN---LLVVVVELDGNESEALDLVPL 1706
G Y+P DIE ++A C V+ +V+ VE + D PL
Sbjct: 398 GQNYYPHDIERVA--EQVEGIKLGRVAACGVYDEKEQSEEVVIFVEYRQSLD---DFTPL 452
Query: 1707 VTNAVLEEHHLIVGVAVVVDPGVVPINS-----RGEKQRMHLRDGFL 1748
H+ + + +D V+P+ S G+ QR L FL
Sbjct: 453 ALKIK---RHVNKKMGLNIDH-VIPVRSIPKTTSGKIQRYKLAQQFL 495
>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated.
Length = 578
Score = 108 bits (273), Expect = 4e-24
Identities = 159/626 (25%), Positives = 244/626 (38%), Gaps = 150/626 (23%)
Query: 104 DPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCA 163
DP G ++ TLT+ +L R+L VA L R S+ GDR ++ P + ++ A
Sbjct: 28 DPAG-VAETLTWSQLYRRTLNVAEEL------RRHGST---GDRAVILAPQG--LEYIVA 75
Query: 164 FYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVA 223
F G + AG++ VP+ VP A +++ +L V LT+ A +V
Sbjct: 76 FLGALQAGLIAVPLSVPQGG--AHDERVSAVLRDTSPSVVLTTSA--------VVDDV-- 123
Query: 224 FKGWPKLTWFVTEHLAKTPKDWAP--------------QPRLTDD---TPAYIEYTTDRD 266
TE++A P AP + AY++YT+
Sbjct: 124 -----------TEYVAPQPGQSAPPVIEVDLLDLDSPRGSDARPRDLPSTAYLQYTS--- 169
Query: 267 GSVMGVTVTRA---AMLSHCRALTQAC---------HY----TEGENMVCVLDFKRETGL 310
GS TR M+SH R + +V L F + GL
Sbjct: 170 GS------TRTPAGVMVSH-RNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGL 222
Query: 311 WHSVLTSVLNGMHAVYI-PYALMKVNPASWMQMITKYRA--SVAVVKSRDLHWGLLATKD 367
V +L G AV P A ++ PA WMQ++ S A + +L A +
Sbjct: 223 VLGVCAPILGGCPAVLTSPVAFLQ-RPARWMQLLASNPHAFSAAPNFAFEL-----AVRK 276
Query: 368 HKDISLSSLRL---LLVGDGA---NPWSLSSCDQFLSVFQSKGLRPDAICPCASSSEC-L 420
D ++ L L L + G+ +P +L +F F LR AI P +E +
Sbjct: 277 TSDDDMAGLDLGGVLGIISGSERVHPATL---KRFADRFAPFNLRETAIRPSYGLAEATV 333
Query: 421 TVSVRRPGRAGVN--------ATGRGVLSMSG-----LSYGVVRVDQENSLTSLTLQDCG 467
V+ R PG+ + + G +G +SYG R S T++
Sbjct: 334 YVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR--------SPTVR--- 382
Query: 468 QVMPGCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFK---VTPLLA 524
+V D+ C VGEI V + YW P + TF V P +
Sbjct: 383 ---------IVDPDT-CIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDP--S 430
Query: 525 DGTALSQDTYTRSGLLGFLGPGGLVFVCGSRDGLMTVTGRKHNADDIIATVLAVEPMKFI 584
GT + + R+G LGF+ G L F+ G L+ V GR H DDI AT+ + I
Sbjct: 431 PGT--PEGPWLRTGDLGFISEGEL-FIVGRIKDLLIVDGRNHYPDDIEATI------QEI 481
Query: 585 YRGRIAVFSIRVLRDERICVIAE-QRPDCSEEESFQWM----SRVLQAVDSIHQVGLYCL 639
GR+A S+ E++ I E ++ S+EE+ + V A+ H + + L
Sbjct: 482 TGGRVAAISVPDDGTEKLVAIIELKKRGDSDEEAMDRLRTVKREVTSAISKSHGLSVADL 541
Query: 640 ALVPPNYLPKTPLGGIHLSECKRRFL 665
LV P +P T G I + C ++
Sbjct: 542 VLVAPGSIPITTSGKIRRAACVEQYR 567
Score = 108 bits (271), Expect = 8e-24
Identities = 150/627 (23%), Positives = 243/627 (38%), Gaps = 141/627 (22%)
Query: 1190 VDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGA 1249
D A+ LT SQL++R V L +TGD ++ P G++ I AF G L G
Sbjct: 27 QDPAGVAETLTWSQLYRRTLNVAEELRRHG--STGDRAVILAPQGLEYIVAFLGALQAGL 84
Query: 1250 VPVTIRPPHPQN--------LQTTLPTV-----RMIVDVSKSVLVLSNQNVIKLLKSKEA 1296
+ V + P L+ T P+V ++ DV++ V Q+
Sbjct: 85 IAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSA--------- 135
Query: 1297 SNVVDIKSWPTILDTD----DMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHA 1352
P +++ D D P+ A P+ AYL ++ +T AG+ +SH
Sbjct: 136 ---------PPVIEVDLLDLDSPRGSDARPRDLPST---AYLQYTSGSTRTPAGVMVSHR 183
Query: 1353 AVTSLCRSMKLACELYPSRHIALCLD-------P-YCGLGFALWVLSSVYSGHHSILIPP 1404
V + +L + + D P Y +G L V + + G ++L P
Sbjct: 184 NVIANFE--QLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGLVLGVCAPILGGCPAVLTSP 241
Query: 1405 SEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIA---LGCVRTCV 1461
PA W+ ++ + EL + S ++A LG V +
Sbjct: 242 VAFLQRPARWMQLLASNPHAFSAAPNFAFELAVRKTSDD-------DMAGLDLGGVLGII 294
Query: 1462 VVAEERPRIHLTSA--FSKLFSALGLSPRAVSTSFG---CRVNIAICLQGASSPEPSCVY 1516
+E R+H + F+ F+ L A+ S+G V +A P V
Sbjct: 295 SGSE---RVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVAT---REPGQPPESVR 348
Query: 1517 VDLRALRNDRV---------SLVERGSPHSLCLLESGKLLPGVKVIIANPETKGQCGDSH 1567
D L LV GSP S P V+ I +P+T +C
Sbjct: 349 FDYEKLSAGHAKRCETGGGTPLVSYGSPRS----------PTVR--IVDPDTCIECPAGT 396
Query: 1568 LGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVT---GNTGELYARTGYLGFLRRTSPA 1624
+GEIWV + A+GY+ +E+E + F A LV G + RTG LGF+
Sbjct: 397 VGEIWVHGDNVAAGYWQ-KPEETE--RTFGATLVDPSPGTPEGPWLRTGDLGFI------ 447
Query: 1625 GVAGAPVPPGVSKLHDAVFVVGALDETIMLRGMRYHPIDIENSVMRAHKKI--AECAVFT 1682
+F+VG + + +++ G ++P DIE ++ ++I A +
Sbjct: 448 -------------SEGELFIVGRIKDLLIVDGRNHYPDDIEATI----QEITGGRVAAIS 490
Query: 1683 ----WTNLLVVVVEL------DGNESEALDLVP-LVTNAVLEEHHLIVGVAVVVDPGVVP 1731
T LV ++EL D + L V VT+A+ + H L V V+V PG +P
Sbjct: 491 VPDDGTEKLVAIIELKKRGDSDEEAMDRLRTVKREVTSAISKSHGLSVADLVLVAPGSIP 550
Query: 1732 INSRGEKQR-----MHLRDGFLADQLD 1753
I + G+ +R + +D F +LD
Sbjct: 551 ITTSGKIRRAACVEQYRQDEF--TRLD 575
Score = 47.2 bits (113), Expect = 7e-05
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 777 ISEILKWRAASTSEHVIFTLLN---SKGSAAQLLTCSQLHKRAERVGALLLERAKINTGD 833
+ +L+ RA+ + FT ++ A+ LT SQL++R V L +TGD
Sbjct: 3 VPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG--STGD 60
Query: 834 HVALIFPPGIDLICAFYGCLYVGAVPVTIRPPHP 867
++ P G++ I AF G L G + V + P
Sbjct: 61 RAVILAPQGLEYIVAFLGALQAGLIAVPLSVPQG 94
Score = 41.5 bits (98), Expect = 0.004
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 24/132 (18%)
Query: 1006 DAVFVVGALDETIMLRGMRYHPIDIENSVMRAHKKI--AECAVFT----WTNLLVVVVEL 1059
+F+VG + + +++ G ++P DIE ++ ++I A + T LV ++EL
Sbjct: 450 GELFIVGRIKDLLIVDGRNHYPDDIEATI----QEITGGRVAAISVPDDGTEKLVAIIEL 505
Query: 1060 ------DGNESEALDLVP-LVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQR-----M 1107
D + L V VT+A+ + H L V V+V PG +PI + G+ +R
Sbjct: 506 KKRGDSDEEAMDRLRTVKREVTSAISKSHGLSVADLVLVAPGSIPITTSGKIRRAACVEQ 565
Query: 1108 HLRDGFLADQLD 1119
+ +D F +LD
Sbjct: 566 YRQDEF--TRLD 575
Score = 39.5 bits (93), Expect = 0.015
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 880 ISEILKWRAASTSEHVIFTLLN---SKGSAAQLLTCSQLHKRAERVGALLLERAKINTGD 936
+ +L+ RA+ + FT ++ A+ LT SQL++R V L +TGD
Sbjct: 3 VPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG--STGD 60
Query: 937 HVALIFPPGIDLICAFYGCLC 957
++ P G++ I AF G L
Sbjct: 61 RAVILAPQGLEYIVAFLGALQ 81
>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional.
Length = 612
Score = 105 bits (263), Expect = 8e-23
Identities = 131/583 (22%), Positives = 235/583 (40%), Gaps = 67/583 (11%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPP- 1257
LT +QL R VGA L + A GD VA++ P GID + F+ + G + V + P
Sbjct: 69 LTWTQLGVRLRAVGARLQQVAG--PGDRVAILAPQGIDYVAGFFAAIKAGTIAVPLFAPE 126
Query: 1258 ---HPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDM 1314
H + L T L V ++ + + + ++ L P ++ D +
Sbjct: 127 LPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRR---------PRVIAIDAI 177
Query: 1315 PKKKLAALYRAPTAEM--LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELY-PSR 1371
P + + +++L ++ +T G++++H AV + M L+ +L +
Sbjct: 178 PDS-AGESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNT 236
Query: 1372 HIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVS----QYRVRDTF 1427
H L Y +G ++ +VY GH +++ P + V P W+ A+S RV
Sbjct: 237 HGVSWLPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVR-RPQRWIKALSEGSRTGRVVTAA 295
Query: 1428 CSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALGLSP 1487
++ +GL + N+ L ++ E I + F+K F+ GL
Sbjct: 296 PNFAYEWAAQRGLPAEGDDIDLSNVVL-------IIGSEPVSIDAVTTFNKAFAPYGLPR 348
Query: 1488 RAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLL 1547
A S+G A EPS VY+D L R V +P+++ + G++
Sbjct: 349 TAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVA 408
Query: 1548 PGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESE--YAQQFSARLVTGN- 1604
+I +P+T + D +GEIW+ + GY+ +E+E + + +RL G+
Sbjct: 409 RSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGR-PEETERTFGAKLQSRLAEGSH 467
Query: 1605 -----TGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDAVFVVGALDETIMLRGMRY 1659
+ RTG LG L +++ G + + I++ G +
Sbjct: 468 ADGAADDGTWLRTGDLGVY-------------------LDGELYITGRIADLIVIDGRNH 508
Query: 1660 HPIDIENSVMRAHKKIAECAVFTWT------NLLVVVVE--LDGNESEALDLVPLVTNAV 1711
+P DIE +V A + V +T LV+V E + ++ + + AV
Sbjct: 509 YPQDIEATVAEASPMVRRGYVTAFTVPAEDNERLVIVAERAAGTSRADPAPAIDAIRAAV 568
Query: 1712 LEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLDP 1754
H L V +V G +P + G+ R R +L +L
Sbjct: 569 SRRHGLAVADVRLVPAGAIPRTTSGKLARRACRAQYLDGRLGV 611
Score = 99.0 bits (247), Expect = 6e-21
Identities = 148/569 (26%), Positives = 233/569 (40%), Gaps = 91/569 (15%)
Query: 145 GDRIALVYPNNDPINFLCAFYGCIFAGIVPVPIEVP-----LTRRDAGSQQIGFLLGSCD 199
GDR+A++ P I+++ F+ I AG + VP+ P R D L +
Sbjct: 92 GDRVAILAPQG--IDYVAGFFAAIKAGTIAVPLFAPELPGHAERLDT-------ALRDAE 142
Query: 200 IQVALTSDAC-------LKGLPKTAAGEVVAFKGWPKLTWFVTEHLAKTPKDWAPQPRLT 252
V LT+ A L+ LP+ V+A P + + P T
Sbjct: 143 PTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAIP----------DSAGESFVPVELDT 192
Query: 253 DDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDF-KRETG-- 309
DD ++++YT+ +GV +T A+ L Q M+ +D R T
Sbjct: 193 DDV-SHLQYTSGSTRPPVGVEITHRAV---GTNLVQ---------MILSIDLLDRNTHGV 239
Query: 310 ----LWHSVLTSVLNGMHAVY-------IPYALMKVNPASWMQMIT---KYRASVAVVKS 355
L+H + S++ G AVY P A ++ P W++ ++ + V +
Sbjct: 240 SWLPLYHDMGLSMI-GFPAVYGGHSTLMSPTAFVR-RPQRWIKALSEGSRTGRVVTAAPN 297
Query: 356 RDLHW----GLLATKDHKDISLSSLRLLLVGDGANPWSLSSCDQFLSVFQSKGLRPDAIC 411
W GL A D DI LS++ L++ G+ P S+ + F F GL A
Sbjct: 298 FAYEWAAQRGLPAEGD--DIDLSNVVLII---GSEPVSIDAVTTFNKAFAPYGLPRTAFK 352
Query: 412 PCASSSEC-LTVSVRRP-GRAGVNATGRGVLSMSGLSYG-VVRVDQENSLTSLTLQDCGQ 468
P +E L V+ P V R L G VRV + + CGQ
Sbjct: 353 PSYGIAEATLFVATIAPDAEPSVVYLDR-----EQLGAGRAVRVAADAPNAVAHVS-CGQ 406
Query: 469 VMPGCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTF--KVTPLLADG 526
V +V D+ + L EVGEI + G YWG P + TF K+ LA+G
Sbjct: 407 VARSQWAVIVDPDTGAEL-PDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEG 465
Query: 527 T----ALSQDTYTRSGLLGFLGPGGLVFVCGSRDGLMTVTGRKHNADDIIATVLAVEPMK 582
+ A T+ R+G LG G L ++ G L+ + GR H DI ATV PM
Sbjct: 466 SHADGAADDGTWLRTGDLGVYLDGEL-YITGRIADLIVIDGRNHYPQDIEATVAEASPM- 523
Query: 583 FIYRGRIAVFSIRVLRDERICVIAEQRPDCSEEESFQWMSRVLQAVDSIHQVGLYCLALV 642
+ RG + F++ +ER+ ++AE+ S + + + AV H + + + LV
Sbjct: 524 -VRRGYVTAFTVPAEDNERLVIVAERAAGTSRADPAPAIDAIRAAVSRRHGLAVADVRLV 582
Query: 643 PPNYLPKTPLGGIHLSECKRRFLEGNLHP 671
P +P+T G + C+ ++L+G L
Sbjct: 583 PAGAIPRTTSGKLARRACRAQYLDGRLGV 611
Score = 40.9 bits (96), Expect = 0.006
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 807 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPP- 865
LT +QL R VGA L + A GD VA++ P GID + F+ + G + V + P
Sbjct: 69 LTWTQLGVRLRAVGARLQQVAG--PGDRVAILAPQGIDYVAGFFAAIKAGTIAVPLFAPE 126
Query: 866 ---HPQNLQTTL 874
H + L T L
Sbjct: 127 LPGHAERLDTAL 138
Score = 34.3 bits (79), Expect = 0.71
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 910 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFY 953
LT +QL R VGA L + A GD VA++ P GID + F+
Sbjct: 69 LTWTQLGVRLRAVGARLQQVAG--PGDRVAILAPQGIDYVAGFF 110
>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated.
Length = 631
Score = 103 bits (259), Expect = 2e-22
Identities = 137/576 (23%), Positives = 232/576 (40%), Gaps = 84/576 (14%)
Query: 143 KSGDRIALVYPNNDPINFLCAFYGCIFAGIVPVPIEVP-----LTRRDAGSQQIGFLLGS 197
K GDR+A++ P N +++L AF+G ++AG + VP+ P + R A +L
Sbjct: 77 KPGDRVAILAPQN--LDYLIAFFGALYAGRIAVPLFDPAEPGHVGRLHA-------VLDD 127
Query: 198 CDIQVALTSDAC-------LKGLPKTAAGEVVAFKGWPKLTWFVTEHLAKTPKDWAPQPR 250
C LT+ + P V+A P + + T W P P
Sbjct: 128 CTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDAVP-------DEVGAT---WVP-PE 176
Query: 251 LTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFKRETGL 310
+DT AY++YT+ GV +T + ++ + A EG+ V L F + GL
Sbjct: 177 ANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDMGL 236
Query: 311 WHSVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGL-------L 363
+L ++L P A ++ P W++ + + S ++ L
Sbjct: 237 ITVLLPALLGHYITFMSPAAFVR-RPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGL 295
Query: 364 ATKDHKDISLSSLRLLLVGDGANPWSLSSCDQFLSVFQSKGLRPDAICPCASSSEC-LTV 422
+ LS+++ LL +G+ P S +S +F F GL P AI P +E L V
Sbjct: 296 PKDGEPPLDLSNVKGLL--NGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFV 353
Query: 423 S-VRRPGRAGVNATGRGVLSMSGLSYGVVRVDQ--ENSLTSLTLQDCGQVMPGCIMTVVK 479
S V R L+ + V V N++ ++ G+V +V
Sbjct: 354 STTPMDEEPTVIYVDRDELN----AGRFVEVPADAPNAVAQVS---AGKVGVSEWAVIVD 406
Query: 480 MDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFK------VTPLLADGTALSQDT 533
++ S L ++GEI + G+ YWG P + TF+ ++ A+G
Sbjct: 407 PETASEL-PDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAP-DDAL 464
Query: 534 YTRSGLLGFLGPGGLVFVCGSRDGLMTVTGRKHNADDIIATVLAVEPMKFIYRGRIAVFS 593
+ R+G G G L ++ G L+ + GR H D+ T A E K + G +A FS
Sbjct: 465 WVRTGDYGVYFDGEL-YITGRVKDLVIIDGRNHYPQDLEYT--AQEATKALRTGYVAAFS 521
Query: 594 I-------RVLRD-------------ERICVIAEQRPDCSEEESFQWMSRVLQAVDSIHQ 633
+ V D E++ ++AE+ P + + + A+ H
Sbjct: 522 VPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPGAHKLDPQPIADDIRAAIAVRHG 581
Query: 634 VGLYCLALVPPNYLPKTPLGGIHLSECKRRFLEGNL 669
V + + LVP +P+T G I C+ +L+G+L
Sbjct: 582 VTVRDVLLVPAGSIPRTSSGKIARRACRAAYLDGSL 617
Score = 92.1 bits (229), Expect = 1e-18
Identities = 116/512 (22%), Positives = 206/512 (40%), Gaps = 70/512 (13%)
Query: 1189 SVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVG 1248
S + A+ LT SQ R VGA L + K GD VA++ P +D + AF+G LY G
Sbjct: 46 STERDGVARDLTWSQFGARNRAVGARLQQVTK--PGDRVAILAPQNLDYLIAFFGALYAG 103
Query: 1249 AVPVTI----RPPHPQNLQTTLPTVRMIVDVSKSVLVLSN---QNVIKLLKSKEASNVVD 1301
+ V + P H L L D + S ++ + + V K +++ A
Sbjct: 104 RIAVPLFDPAEPGHVGRLHAVLD------DCTPSAILTTTDSAEGVRKFFRARPA----- 152
Query: 1302 IKSWPTILDTDDMPKKKLAALYRAPTA--EMLAYLDFSVSTTGMLAGIKMSHAAVTSLCR 1359
K P ++ D +P + + A + P A + +AYL ++ +T + AG++++H + +
Sbjct: 153 -KERPRVIAVDAVPDE-VGATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVL 210
Query: 1360 SMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALW---LS 1416
+ A E L + +G +L ++ + + + P + V P W L+
Sbjct: 211 QVIDALEGQEGDRGVSWLPFFHDMGLITVLLPALLGHYITFMSPAAFVR-RPGRWIRELA 269
Query: 1417 AVSQYRVRDTFCS---YGVMELCTKGL--SGSIPQLKARNIALGCVRTCVVVAEERPRIH 1471
TF + + +GL G P L N+ ++ E
Sbjct: 270 RKPGGTGG-TFSAAPNFAFEHAAARGLPKDGEPP-LDLSNVK------GLLNGSEPVSPA 321
Query: 1472 LTSAFSKLFSALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVE 1531
F++ F+ GL P A+ S+G EP+ +YVD L R V
Sbjct: 322 SMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVP 381
Query: 1532 RGSPHSLCLLESGKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESE 1591
+P+++ + +GK+ +I +PET + D +GEIW+ + +GY +G E
Sbjct: 382 ADAPNAVAQVSAGKVGVSEWAVIVDPETASELPDGQIGEIWLHGNNIGTGY---WGKPEE 438
Query: 1592 YAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVAGAPVPP--------GVSKLHDAVF 1643
A F L + R S + GAP GV ++
Sbjct: 439 TAATFQNILKS-----------------RLSESHAEGAPDDALWVRTGDYGVY-FDGELY 480
Query: 1644 VVGALDETIMLRGMRYHPIDIENSVMRAHKKI 1675
+ G + + +++ G ++P D+E + A K +
Sbjct: 481 ITGRVKDLVIIDGRNHYPQDLEYTAQEATKAL 512
Score = 40.5 bits (95), Expect = 0.010
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 803 AAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTI 862
A+ LT SQ R VGA L + K GD VA++ P +D + AF+G LY G + V +
Sbjct: 52 VARDLTWSQFGARNRAVGARLQQVTK--PGDRVAILAPQNLDYLIAFFGALYAGRIAVPL 109
Query: 863 RPP 865
P
Sbjct: 110 FDP 112
Score = 33.2 bits (76), Expect = 1.7
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 906 AAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCL 956
A+ LT SQ R VGA L + K GD VA++ P +D + AF+G L
Sbjct: 52 VARDLTWSQFGARNRAVGARLQQVTK--PGDRVAILAPQNLDYLIAFFGAL 100
>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated.
Length = 545
Score = 96.2 bits (240), Expect = 3e-20
Identities = 116/486 (23%), Positives = 173/486 (35%), Gaps = 72/486 (14%)
Query: 203 ALTSDACLKGLPKTAAGEVVAFKGWPKLTWFVTEHLAKTPKDWAPQPRLTDDTPAYIEYT 262
+ + A + G P AA V+ KG LT V + LA P +D A ++ T
Sbjct: 106 MIGAKAVVVGEPFLAAAPVLEEKGIRVLT--VADLLAADP---IDPVETGEDDLALMQLT 160
Query: 263 TDRDGSVMGVTVTRAAMLSHCRALTQACHYT-EGENMVCVLDFKRETGLWHSVLTSVLNG 321
+ GS V +T + ++ A+ A + E + MV L + G+ + + G
Sbjct: 161 SGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLTVPMYFG 220
Query: 322 MHAVYIPYALMKVNPASWMQMITKYRASV--------AVVKSRDLHWGLLATKDHKDISL 373
V + +P W ++I+KYR ++ A++ R L L
Sbjct: 221 AELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARR-----LRRQAKPGAFDL 275
Query: 374 SSLRLLLVGDGANPWSLSSCDQFLSVFQSKGLRPDAICPCASSSEC-LTVSVRRPGRAGV 432
SSLR L +GA P + + L GLRP+AI P +E L VS G V
Sbjct: 276 SSLRFAL--NGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLV 333
Query: 433 ---------NATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQVMPGCIMTVVKMDSP 483
A R V + G R L +L G +PG + VV D
Sbjct: 334 VDEVDADLLAALRRAVPATK----GNTR-----RLATL-----GPPLPGLEVRVV--DED 377
Query: 484 SYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDT--YTRSGLLG 541
+ VG I + Y L DG +QD + +G LG
Sbjct: 378 GQVLPPRGVGVIELRGESVTPGY---------------LTMDGFIPAQDADGWLDTGDLG 422
Query: 542 FLGPGGLVFVCGSRDGLMTVTGRKHNADDI---IATVLAVEPMKFIYRGRIAVFSIRVLR 598
+L G V VCG ++ + GR DI A V V P +AV
Sbjct: 423 YLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAARVEGVRP-----GNAVAVRLDAGHS 477
Query: 599 DERICVIAEQRPDCSEEESFQWMSRVLQAVDSIHQVGLYCLALVPPNYLPKTPLGGIHLS 658
E V E E + +V V + V + ++ P +PKTP G + +
Sbjct: 478 REGFAVAVESNAFEDPAEVRRIRHQVAHEVVAEVGVRPRNVVVLGPGSIPKTPSGKLRRA 537
Query: 659 ECKRRF 664
Sbjct: 538 NAAELV 543
Score = 41.5 bits (98), Expect = 0.004
Identities = 58/241 (24%), Positives = 91/241 (37%), Gaps = 52/241 (21%)
Query: 1516 YVDLRALRNDRVSL-VERGSPHSLCLLESGKLLPGVKVIIANPETKGQ-CGDSHLGEIWV 1573
VD L R ++ +G+ L L G LPG++V + + + GQ +G I +
Sbjct: 336 EVDADLLAALRRAVPATKGNTRRLATL--GPPLPGLEVRVVDED--GQVLPPRGVGVIEL 391
Query: 1574 QSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVAGAPVPP 1633
+ GY ++ G AQ L +TG+L GYL
Sbjct: 392 RGESVTPGYLTMDGFIP--AQDADGWL---DTGDL----GYL---------------TEE 427
Query: 1634 GVSKLHDAVFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTNL------L 1687
G V V G + + I++ G +P DIE + R AV +
Sbjct: 428 G------EVVVCGRVKDVIIMAGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSREGF 481
Query: 1688 VVVVE--LDGNESEALDLVPLVTNAVLEEHHLIVGVA----VVVDPGVVPINSRGEKQRM 1741
V VE + +E + V + V+ E VGV VV+ PG +P G+ +R
Sbjct: 482 AVAVESNAFEDPAEVRRIRHQVAHEVVAE----VGVRPRNVVVLGPGSIPKTPSGKLRRA 537
Query: 1742 H 1742
+
Sbjct: 538 N 538
Score = 36.1 bits (84), Expect = 0.19
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 16/113 (14%)
Query: 1008 VFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTNL------LVVVVE--L 1059
V V G + + I++ G +P DIE + R AV + V VE
Sbjct: 430 VVVCGRVKDVIIMAGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSREGFAVAVESNA 489
Query: 1060 DGNESEALDLVPLVTNAVLEEHHLIVGVA----VVVDPGVVPINSRGEKQRMH 1108
+ +E + V + V+ E VGV VV+ PG +P G+ +R +
Sbjct: 490 FEDPAEVRRIRHQVAHEVVAE----VGVRPRNVVVLGPGSIPKTPSGKLRRAN 538
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and
4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase).
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A
ligase catalyze the first activating step for benzoate
and 4-hydroxybenzoate catabolic pathways, respectively.
Although these two enzymes share very high sequence
homology, they have their own substrate preference. The
reaction proceeds via a two-step process; the first
ATP-dependent step forms the substrate-AMP intermediate,
while the second step forms the acyl-CoA ester, releasing
the AMP. Aromatic compounds represent the second most
abundant class of organic carbon compounds after
carbohydrates. Some bacteria can use benzoic acid or
benzenoid compounds as the sole source of carbon and
energy through degradation. Benzoate CoA ligase and
4-hydroxybenzoate-Coenzyme A ligase are key enzymes of
this process.
Length = 506
Score = 83.9 bits (208), Expect = 2e-16
Identities = 123/587 (20%), Positives = 198/587 (33%), Gaps = 169/587 (28%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 1258
LT +L + R G L E I + V LI + AF+G + +GAVPV
Sbjct: 31 LTYGELQEEVNRWGNALRE-LGIERENRVLLILLDTPEFPTAFWGAIKIGAVPV------ 83
Query: 1259 PQNLQTTLPTVR-MIVDVSKSVLVLSNQ--NVIKLLKSKEAS---NVVDIKSWPTILDTD 1312
P N T R + D VLV+S + V+K K+ +V + P L
Sbjct: 84 PINTLLTPDDYRYYLNDSRARVLVISEELWEVLKPALQKDPHLRHVIVVGGAGPGALSYA 143
Query: 1313 DMPKKKLAALYRAPT-AEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSR 1371
+ L A T A+ +A+ +S +TG G+ H M + E Y
Sbjct: 144 QLIATAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHLH-------HDMLVTAEAYAKN 196
Query: 1372 HIALCLDPYC----------GLG----FALWVLSSVYSGHHSILIPPSEVEVNPALWLSA 1417
+ + D GLG F L V G ++L+P P +
Sbjct: 197 VLGITEDDVVFSAAKLFFAYGLGNGLYFPLSV------GATTVLMPE---RPTPDAVFAT 247
Query: 1418 VSQYRVRDTFCS----YGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLT 1473
+ +Y+ F Y M + P+ R+++ +R CV E
Sbjct: 248 IERYKP-TVFFGVPTLYAAML--------AAPEKPERDLS--SLRLCVSAGE-------- 288
Query: 1474 SAFSKLFSALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERG 1533
AL P + + + I L G S E +++ R V+ G
Sbjct: 289 --------AL---PAEIGYRWKELFGLEI-LDGIGSTEMLHIFLSNRPGA------VKYG 330
Query: 1534 SPHSLCLLESGKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYA 1593
+ SGK +PG +V + + + + D +GE+WV+ +A+GY++
Sbjct: 331 T--------SGKPVPGYEVKLVDED-GEEVADGEIGELWVRGDSSAAGYWNRR------- 374
Query: 1594 QQFSARLVTG---NTGELYART--GYLGFLRRTSPAGVAGAPVPPGVSKLHDAVFVVGAL 1648
+ + G TG+ Y R GY + R+ D + V
Sbjct: 375 -EKTRETFVGEWTRTGDKYYRDEDGYYWYCGRS------------------DDMLKVS-- 413
Query: 1649 DETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTNLLVVVVELDGNESEALDLVPLVT 1708
G+ P ++E+ + H + E AV +
Sbjct: 414 -------GIWVSPFEVED-ALLQHPAVLEAAVVGAED----------------------- 442
Query: 1709 NAVLEEHHLIVGVAVVV-DPGVVPINSRGEKQRMHLRDGFLADQLDP 1754
E L A VV G P + L+D F+ D+L P
Sbjct: 443 -----EDGLTKPKAFVVLKDGYQP----SPELETELKD-FVKDKLAP 479
Score = 50.8 bits (122), Expect = 5e-06
Identities = 43/180 (23%), Positives = 64/180 (35%), Gaps = 23/180 (12%)
Query: 112 TLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAG 171
+LTYG+L + L I R +R+ L+ D F AF+G I G
Sbjct: 30 SLTYGELQEEVNRWGNALRELGIER--------ENRVLLILL--DTPEFPTAFWGAIKIG 79
Query: 172 IVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGE------VVAFK 225
VPVPI LT + L +V + S+ + L K A + V+
Sbjct: 80 AVPVPINTLLT-----PDDYRYYLNDSRARVLVISEELWEVL-KPALQKDPHLRHVIVVG 133
Query: 226 GWPKLTWFVTEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRA 285
G + +A ++ DD A+ Y++ G GV ML A
Sbjct: 134 GAGPGALSYAQLIATAAEELEAAATSADD-MAFWLYSSGSTGRPKGVVHLHHDMLVTAEA 192
Score = 48.5 bits (116), Expect = 3e-05
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 807 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 866
LT +L + R G L E I + V LI + AF+G + +GAVPV
Sbjct: 31 LTYGELQEEVNRWGNALRE-LGIERENRVLLILLDTPEFPTAFWGAIKIGAVPV------ 83
Query: 867 PQNLQTTLPTHQFISEILKWRAASTSE 893
P N T +++ + R SE
Sbjct: 84 PINTLLTPDDYRYYLNDSRARVLVISE 110
Score = 33.4 bits (77), Expect = 1.3
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 910 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYG 954
LT +L + R G L E I + V LI + AF+G
Sbjct: 31 LTYGELQEEVNRWGNALRE-LGIERENRVLLILLDTPEFPTAFWG 74
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting
insects and 4-Coumarate-CoA Ligase (4CL). This family
contains two functionally unique groups of proteins; one
group is insect firefly luciferases and the other is
plant 4-coumarate:coenzyme A ligases. However, they share
significant sequence similarity in spite of their
functional diversity. Luciferase catalyzes the production
of light in the presence of MgATP, molecular oxygen, and
luciferin. In the first step, luciferin is activated by
acylation of its carboxylate group with ATP, resulting in
an enzyme-bound luciferyl adenylate. In the second step,
luciferyl adenylate reacts with molecular oxygen,
producing an enzyme-bound excited state product (Luc=O*)
and releasing AMP. This excited-state product then decays
to the ground state (Luc=O), emitting a quantum of
visible light. 4-coumarate:coenzyme A ligase is a key
enzyme in the phenylpropanoid metabolic pathway for
monolignol and flavonoid biosynthesis. It catalyzes the
synthesis of hydroxycinnamate-CoA thioesters in a
two-step reaction, involving the formation of
hydroxycinnamate-AMP anhydride and then the nucleophilic
substitution of AMP by CoA. The phenylpropanoid pathway
is one of the most important secondary metabolism
pathways in plants and hydroxycinnamate-CoA thioesters
are the precursors of lignin and other important
phenylpropanoids.
Length = 487
Score = 81.9 bits (203), Expect = 1e-15
Identities = 101/507 (19%), Positives = 172/507 (33%), Gaps = 115/507 (22%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 1258
LT + L K+A R+ A L + + GD VALI P I+ F GCL G + + +
Sbjct: 11 LTFADLLKKALRL-AKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGI---VSAAN 66
Query: 1259 PQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLK--SKEASNVVDI------KSWPTILD 1310
P L + SK L+ + + + +K +KE VV I ++
Sbjct: 67 PSYTPDEL--AHQLKI-SKPKLIFCDPDELDKVKEAAKELGPVVRIIVLDSAPDGVLRIE 123
Query: 1311 TDDMPKKKLAALYRAPT----AEMLAYLDFSVSTTGMLAGIKMSH---AAVTSLCRSMKL 1363
P+ +R + A L +S TTG+ G+ +SH A S +
Sbjct: 124 DLLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNIIANLSQVQDTLK 183
Query: 1364 ACELYPSRHIALCLDPY---CGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQ 1420
+ + L P+ GL L S+ G I++P + E +L + +
Sbjct: 184 GNPDSSNDVV-LTFLPFYHAYGLTTTLA---SLLCGATVIIMPKFDSE----TFLKLIEK 235
Query: 1421 YRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLF 1480
Y+V F + L+ S P + +++ L FS
Sbjct: 236 YKVTSLFLVPPIAVA----LAKS-PLVDKYDLS-----------------SLRVIFS--- 270
Query: 1481 SALGLSP--RAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSL 1538
G +P + + R QG E +P
Sbjct: 271 ---GAAPLSKELQEELRKRFPNTTIKQGYGMTE---------------TGPATTLTPPGD 312
Query: 1539 CLLES-GKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFS 1597
S G+L+P V+ I + + G + GE+ V+ P GY + +
Sbjct: 313 EKPGSVGRLVPNVEAKIVDEDGGKSLGPNERGELCVKGPQIMKGY---LNNPEATKETI- 368
Query: 1598 ARLVTGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDA---VFVVGALDETIML 1654
+ + TG +G+ D ++V E I
Sbjct: 369 -------DEDGWLHTGDIGYF---------------------DEDGNFYIVDRKKELIKY 400
Query: 1655 RGMRYHPIDIENSVMRAHKKIAECAVF 1681
+G + P ++E +V+ H K+A+ AV
Sbjct: 401 KGYQVPPAELE-AVLLEHPKVADAAVI 426
Score = 77.7 bits (192), Expect = 2e-14
Identities = 84/462 (18%), Positives = 156/462 (33%), Gaps = 101/462 (21%)
Query: 112 TLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAG 171
LT+ LL ++L++A L LK GD +AL+ PN+ I F F GC+ AG
Sbjct: 10 ELTFADLLKKALRLAKGLRKL--------GLKQGDVVALISPNS--IEFPPVFLGCLAAG 59
Query: 172 IV--PV-----PIEVPLTRRDAGSQQIGFLLGS-CDIQVALTSDACLKGLPKTAAGEVVA 223
+ P E+ + + + + ++ + L + + +
Sbjct: 60 GIVSAANPSYTPDELAHQLKISKPK---LIFCDPDELDKVKEAAKELGPVVRIIVLDSAP 116
Query: 224 FKGWPKLTWFVTEHLAKTPKDWAPQPRLT-DDTPAYIEYTTDRDGSVMGVTVTR---AAM 279
+ E ++ P P + D A + Y++ G GV ++ A
Sbjct: 117 DGVLRIED--LLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNIIAN 174
Query: 280 LSHCRALTQACHYTEGENMVCVLDFKRETGLWHSVLTSVLNGMHAVYIPYALMKVNPASW 339
LS + + + + ++ L F GL + L S+L G + +P K + ++
Sbjct: 175 LSQVQDTLKGNPDSSNDVVLTFLPFYHAYGLT-TTLASLLCGATVIIMP----KFDSETF 229
Query: 340 MQMITKYRAS---------VAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGANPWSL 390
+++I KY+ + VA+ KS LSSLR++ GA P S
Sbjct: 230 LKLIEKYKVTSLFLVPPIAVALAKS----------PLVDKYDLSSLRVIFS--GAAPLSK 277
Query: 391 SSCDQFLSVFQSKGLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVV 450
++ F + ++ G G M+
Sbjct: 278 ELQEELRKRFPNTTIKQ----------------------------GYG---MTETGPATT 306
Query: 451 RVDQENSLTSLTLQDCGQVMPGCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLP 510
+ G+++P +V D L +E GE+CV Y
Sbjct: 307 LTPPGDEKPG----SVGRLVPNVEAKIVDEDGGKSL-GPNERGELCVKGPQIMKGYLN-- 359
Query: 511 GLSNTTFKVTPLLADGTALSQDTYTRSGLLGFLGPGGLVFVC 552
N A + +D + +G +G+ G ++
Sbjct: 360 ---NPE-------ATKETIDEDGWLHTGDIGYFDEDGNFYIV 391
Score = 39.5 bits (93), Expect = 0.015
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 807 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAV 858
LT + L K+A R+ A L + + GD VALI P I+ F GCL G +
Sbjct: 11 LTFADLLKKALRL-AKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGI 61
Score = 34.9 bits (81), Expect = 0.37
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 910 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCL 956
LT + L K+A R+ A L + + GD VALI P I+ F GCL
Sbjct: 11 LTFADLLKKALRL-AKGLRKLGLKQGDVVALISPNSIEFPPVFLGCL 56
Score = 34.1 bits (79), Expect = 0.63
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 1008 VFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVF 1047
++V E I +G + P ++E +V+ H K+A+ AV
Sbjct: 388 FYIVDRKKELIKYKGYQVPPAELE-AVLLEHPKVADAAVI 426
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA
synthetases similar to Escherichia coli FadD. This
subfamily of the AMP-forming adenylation family contains
Escherichia coli FadD and similar prokaryotic fatty acid
CoA synthetases. FadD was characterized as a long-chain
fatty acid CoA synthetase. The gene fadD is regulated by
the fatty acid regulatory protein FadR. Fatty acid CoA
synthetase catalyzes the formation of fatty acyl-CoA in
a two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions.
Length = 468
Score = 76.0 bits (188), Expect = 7e-14
Identities = 76/336 (22%), Positives = 122/336 (36%), Gaps = 78/336 (23%)
Query: 79 LPRNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTS 138
L LE A +R+ P L G+ LTY +L S + A L
Sbjct: 1 LADLLERAARRF-------PDRPALTFFGR---KLTYAELDELSDRFAAYLQ-------- 42
Query: 139 ESSLKSGDRIALVYPNNDPINFLCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSC 198
+ +K GDR+AL+ PN F A++G + AG V VP+ T R ++ L
Sbjct: 43 QLGVKKGDRVALMLPNCPQ--FPIAYFGILKAGAVVVPVNPLYTPR-----ELEHQLNDS 95
Query: 199 DIQVALTSDACLKGLPKTAAGEVVAFKGWPKLTWFVTEHLAKTPKDWAPQPRLTDDTPAY 258
+V + ++F E + L+ D A
Sbjct: 96 GAKVLIV---------------AISF-----------EDALASGAPLPLPVELSPDDLAV 129
Query: 259 IEYTTDRDGSVMGVT-VTRAAMLSH---------CRALTQACHYTEGENMVCVLDFKRET 308
++YT G T V + AML+H A + + + L
Sbjct: 130 LQYTG-------GTTGVPKGAMLTHRNLVANVQQIAAWVKDLR-EGEDRFLTALPLFHIF 181
Query: 309 GLWHSVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVAV-VKSRDLHWGLLATKD 367
GL ++L + G V +P P + ++ I +YR ++ V + L+ LL +
Sbjct: 182 GLTVNMLLGLRLGATNVLVP----NFRPINVLKEIKRYRFTIFPGVPT--LYNALLNHPE 235
Query: 368 HKDISLSSLRLLLVGDGANPWSLSSCDQFLSVFQSK 403
K SSLRL + G GA P + ++F +
Sbjct: 236 FKKYDFSSLRLCISG-GA-PLPVEVAERFEEKTGAP 269
Score = 55.2 bits (134), Expect = 2e-07
Identities = 98/495 (19%), Positives = 169/495 (34%), Gaps = 130/495 (26%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 1258
LT ++L + ++R A L + + GD VAL+ P A++G L GAV V
Sbjct: 25 LTYAELDELSDRFAAYLQQ-LGVKKGDRVALMLPNCPQFPIAYFGILKAGAVVV------ 77
Query: 1259 PQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDMPKKK 1318
P N T + L A ++ S+ L +
Sbjct: 78 PVNPLYTPRELEHQ------------------LNDSGAKVLIVAISFEDALASGAPLPLP 119
Query: 1319 LAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSH----AAVTSLCRSMKLACELYPSRHIA 1374
+ + LA L ++ TTG+ G ++H A V + +K +L
Sbjct: 120 -----VELSPDDLAVLQYTGGTTGVPKGAMLTHRNLVANVQQIAAWVK---DLREGEDRF 171
Query: 1375 LCLDP-YCGLGFALWVLSSVYSGHHSILIP-PSEVEVNPALWLSAVSQYRVRDTFCSYGV 1432
L P + G + +L + G ++L+P + V L + +YR F GV
Sbjct: 172 LTALPLFHIFGLTVNMLLGLRLGATNVLVPNFRPINV-----LKEIKRYRF-TIFP--GV 223
Query: 1433 MELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALGLSPRAVST 1492
L + + + + +R C+ L ++ F
Sbjct: 224 PTL----YNALLNHPEFKKYDFSSLRLCISGGAP-----LPVEVAERFEEK--------- 265
Query: 1493 SFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLPGVKV 1552
G + ++G E S V N + GS G LPG +V
Sbjct: 266 -TGAPL-----VEGYGLTETSPV-----TTVNPLDGERKPGS--------IGLPLPGTEV 306
Query: 1553 IIANPETK----GQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGEL 1608
I + E G+ +GE+ V+ P GY++ +E+ L G
Sbjct: 307 KIVDDEGNELPPGE-----VGELVVRGPQVMKGYWNR-PEETAEV------LTDG----- 349
Query: 1609 YARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDA---VFVVGALDETIMLRGMRYHPIDIE 1665
+ RTG +G++ D ++V + I++ G +P +IE
Sbjct: 350 WLRTGDIGYM---------------------DEDGYFYIVDRKKDMIIVGGFNVYPREIE 388
Query: 1666 NSVMRAHKKIAECAV 1680
V+ +H + E AV
Sbjct: 389 E-VLYSHPAVLEAAV 402
Score = 44.0 bits (105), Expect = 6e-04
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 777 ISEILKWRAASTSEHVIFTLLNSKGSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVA 836
++++L+ A + T K LT ++L + ++R A L + + GD VA
Sbjct: 1 LADLLERAARRFPDRPALTFFGRK------LTYAELDELSDRFAAYLQQ-LGVKKGDRVA 53
Query: 837 LIFPPGIDLICAFYGCLYVGAVPVTIRP 864
L+ P A++G L GAV V + P
Sbjct: 54 LMLPNCPQFPIAYFGILKAGAVVVPVNP 81
Score = 33.6 bits (78), Expect = 0.93
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 880 ISEILKWRAASTSEHVIFTLLNSKGSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVA 939
++++L+ A + T K LT ++L + ++R A L + + GD VA
Sbjct: 1 LADLLERAARRFPDRPALTFFGRK------LTYAELDELSDRFAAYLQQ-LGVKKGDRVA 53
Query: 940 LIFPPGIDLICAFYGCL 956
L+ P A++G L
Sbjct: 54 LMLPNCPQFPIAYFGIL 70
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.
Length = 513
Score = 73.0 bits (180), Expect = 6e-13
Identities = 77/326 (23%), Positives = 123/326 (37%), Gaps = 49/326 (15%)
Query: 79 LPRNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTS 138
LP L A +R+G A V LTY +L +R + A L
Sbjct: 7 LPELLARAARRFGDKE-----AYVFGDQ-----RLTYAELNARVRRAAAALA-------- 48
Query: 139 ESSLKSGDRIALVYPNNDPINFLCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSC 198
+ GDR+A+ PN+ +++ A G + AG V VP+ TR A + ++L
Sbjct: 49 ALGIGKGDRVAIWAPNS--PHWVIAALGALKAGAVVVPLN---TRYTAD--EAAYILARG 101
Query: 199 DIQVALTSDACLKGLPKTAAGEVVAFK-------------GWPKLTWFVTEHLAKTPKDW 245
D + L G+ +A + A + T+ T+ LA
Sbjct: 102 DAKALFVLGLFL-GVDYSATTRLPALEHVVICETEEDDPHTEKMKTF--TDFLAAGDPAE 158
Query: 246 APQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFK 305
P + D A I +T+ G G +T +LS+ + TEG+ + F
Sbjct: 159 RA-PEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFF 217
Query: 306 RETGLWHSVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASV-AVVKSRDLHWGLLA 364
G V ++ G A +P L +P ++I R +V + ++ LL
Sbjct: 218 HVFGYKAGVNAPLMRG--ATILP--LPVFDPDEVFRLIETERITVLPGPPT--MYNSLLQ 271
Query: 365 TKDHKDISLSSLRLLLVGDGANPWSL 390
D LSSLRL + G + P +L
Sbjct: 272 HPDRSAEDLSSLRLAVTGAASMPVAL 297
Score = 42.2 bits (100), Expect = 0.003
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 807 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 864
LT ++L+ R R A L I GD VA+ P + A G L GAV V +
Sbjct: 31 LTYAELNARVRRAAAALAALG-IGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNT 87
Score = 42.2 bits (100), Expect = 0.003
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 1256
LT ++L+ R R A L I GD VA+ P + A G L GAV V +
Sbjct: 31 LTYAELNARVRRAAAALAALG-IGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNT 87
Score = 31.8 bits (73), Expect = 4.0
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 910 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCL 956
LT ++L+ R R A L I GD VA+ P + A G L
Sbjct: 31 LTYAELNARVRRAAAALAALG-IGKGDRVAIWAPNSPHWVIAALGAL 76
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Streptoalloteichus
tallysomycin biosynthesis genes. The adenylation (A)
domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl moiety
then forms a thioester to the enzyme-bound cofactor
phosphopantetheine of a peptidyl carrier protein domain.
NRPSs are large multifunctional enzymes which synthesize
many therapeutically useful peptides in bacteria and
fungi via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal toxins,
and enzyme inhibitors. NRPS has a distinct modular
structure in which each module is responsible for the
recognition, activation, and in some cases, modification
of a single amino acid residue of the final peptide
product. The modules can be subdivided into domains that
catalyze specific biochemical reactions. This family
includes the TLM biosynthetic gene cluster from
Streptoalloteichus that consists of nine NRPS genes; the
N-terminal module of TlmVI (NRPS-5) and the starter
module of BlmVI (NRPS-5) are comprised of the acyl CoA
ligase (AL) and acyl carrier protein (ACP)-like domains,
which are thought to be involved in the biosynthesis of
the beta-aminoalaninamide moiety.
Length = 476
Score = 66.1 bits (162), Expect = 1e-10
Identities = 56/236 (23%), Positives = 92/236 (38%), Gaps = 33/236 (13%)
Query: 1195 AAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTI 1254
A LT +L +RA + A L GD VA++ P G + I A G L GA V I
Sbjct: 9 GAGTLTYGELARRANAIAAALRAAGVAP-GDLVAVVMPKGWEQIVAVLGILLAGAAYVPI 67
Query: 1255 RPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDM 1314
P P I+ + + VL++ + + ++ + V D D
Sbjct: 68 DPDQPA------ERRAAILARAGARAVLTDPGLAQPEEAPDLLVVAD----------DAA 111
Query: 1315 PKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPS-RHI 1373
+ A + LAY+ F+ +TG G+ ++H A + + + P+ R +
Sbjct: 112 AAESPAPPPPRVDPDDLAYVIFTSGSTGEPKGVMITHRAAVNTILDVNRRFGVGPADRVL 171
Query: 1374 ALCLDPYCGLGFALWVLSSVY------SGHHSILIPPSEVEVNPALWLSAVSQYRV 1423
AL L F L SVY S ++++P +P W V ++ V
Sbjct: 172 AL-----SALHFDL----SVYDIFGALSAGAALVLPDEARRRDPDHWAELVQRHGV 218
Score = 49.9 bits (120), Expect = 9e-06
Identities = 43/179 (24%), Positives = 66/179 (36%), Gaps = 32/179 (17%)
Query: 112 TLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAG 171
TLTYG+L R+ +A L + + GD +A+V P + A G + AG
Sbjct: 12 TLTYGELARRANAIAAAL--------RAAGVAPGDLVAVVMPKG--WEQIVAVLGILLAG 61
Query: 172 IVPVPIEV--PLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPK 229
VPI+ P RR A +L + LT + P
Sbjct: 62 AAYVPIDPDQPAERRAA-------ILARAGARAVLTDPGLAQPEE------------APD 102
Query: 230 LTWFVTEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQ 288
L + A P PR+ D AY+ +T+ G GV +T A ++ + +
Sbjct: 103 LLVVADDAAAAESPA-PPPPRVDPDDLAYVIFTSGSTGEPKGVMITHRAAVNTILDVNR 160
Score = 46.4 bits (111), Expect = 1e-04
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 803 AAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTI 862
A LT +L +RA + A L GD VA++ P G + I A G L GA V I
Sbjct: 9 GAGTLTYGELARRANAIAAALRAAGVAP-GDLVAVVMPKGWEQIVAVLGILLAGAAYVPI 67
Query: 863 RPPHPQ 868
P P
Sbjct: 68 DPDQPA 73
Score = 37.6 bits (88), Expect = 0.069
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 906 AAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCL 956
A LT +L +RA + A L GD VA++ P G + I A G L
Sbjct: 9 GAGTLTYGELARRANAIAAALRAAGVAP-GDLVAVVMPKGWEQIVAVLGIL 58
Score = 31.8 bits (73), Expect = 3.6
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 1544 GKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTG 1603
GK LP K + + E C D GE+++ A GY +GD A++F +T
Sbjct: 303 GKPLPNQKFYVLD-EDGRDCPDWVPGELYIGGVGVALGY---WGDPELTAERF----ITH 354
Query: 1604 NTGE-LYARTGYLGFLRR 1620
TGE LY RTG LG R
Sbjct: 355 RTGERLY-RTGDLGRYRP 371
Score = 31.0 bits (71), Expect = 5.8
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 15/73 (20%)
Query: 1105 QRMHLRDGFLADQLDPIY----IWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGE- 1159
Q+ ++ D D P + +++ A GY +GD A++F +T TGE
Sbjct: 309 QKFYVLDEDGRDC--PDWVPGELYIGGVGVALGY---WGDPELTAERF----ITHRTGER 359
Query: 1160 LYARTGYLGFLRR 1172
LY RTG LG R
Sbjct: 360 LY-RTGDLGRYRP 371
>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein
synthetase (also called 2-acylglycerophosphoethanolamine
acyltransferase, Aas). Acyl-acyl carrier protein
synthase (Aas) is a membrane protein responsible for a
minor pathway of incorporating exogenous fatty acids
into membrane phospholipids. Its in vitro activity is
characterized by the ligation of free fatty acids
between 8 and 18 carbons in length to the acyl carrier
protein sulfydryl group (ACP-SH) in the presence of ATP
and Mg2+. However, its in vivo function is as a
2-acylglycerophosphoethanolamine (2-acyl-GPE)
acyltransferase. The reaction occurs in two steps: the
acyl chain is first esterified to acyl carrier protein
(ACP) via a thioester bond, followed by a second step
where the acyl chain is transferred to a
2-acyllysophospholipid, thus completing the
transacylation reaction. This model represents the
C-terminal domain of the enzyme, which belongs to the
class I adenylate-forming enzyme family, including
acyl-CoA synthetases.
Length = 489
Score = 63.8 bits (156), Expect = 4e-10
Identities = 65/287 (22%), Positives = 111/287 (38%), Gaps = 36/287 (12%)
Query: 109 LSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCI 168
+LTY KLL+ SL L++ I + K G+ I ++ P++ + A +
Sbjct: 4 TGGSLTYRKLLTASL-----ALSRLIKK----LTKEGENIGIMLPSS--VAGALANLALL 52
Query: 169 FAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLK-----GLPKTAAGEVVA 223
AG VPV + T AG + + I+ +TS A L+ GL G +
Sbjct: 53 LAGKVPVMLN--FT---AGEEGLRSACKQAGIKTVITSRAFLEKLKLEGLVVLLEGVRIV 107
Query: 224 F--------KGWPKLTWFVTEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVT 275
+ KL F+ L D PA I +T+ +G GV ++
Sbjct: 108 YLEDLRAKISKADKLKAFLAAKLPPALL-RLFLAGAKPDDPAVILFTSGSEGLPKGVVLS 166
Query: 276 RAAMLSHCRALTQACHYTEGENMVCVLDFKRETGLWHSVLTSVLNGMHAVYIPYALMKVN 335
+L++ + + ++ L GL ++L +L G+ VY P L +
Sbjct: 167 HRNLLANIDQIAAVIDLNTEDVLLGALPLFHAFGLTVTLLLPLLTGLRVVYYPNPL---D 223
Query: 336 PASWMQMITKYRASVAVVKSRDLHWGLLATKDHKDISLSSLRLLLVG 382
++I Y+A++ A H + SSLRL++ G
Sbjct: 224 AKKIAELIRDYKATILC--GTPTFLRGYARNAHPE-DFSSLRLVVAG 267
Score = 33.0 bits (76), Expect = 1.5
Identities = 79/402 (19%), Positives = 137/402 (34%), Gaps = 94/402 (23%)
Query: 1212 GALLLER--AKINT-GDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPHPQNLQTTLPT 1268
+L L R K+ G+++ ++ P + A L G VPV + N
Sbjct: 16 ASLALSRLIKKLTKEGENIGIMLPSSVAGALANLALLLAGKVPVML------NFTAGEEG 69
Query: 1269 VRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDMPKK-----KLAALY 1323
+R + V++++ ++ LK + +V + I+ +D+ K KL A
Sbjct: 70 LRSACKQAGIKTVITSRAFLEKLKLEG---LVVLLEGVRIVYLEDLRAKISKADKLKAFL 126
Query: 1324 RAPTAEMLAYLD-------------FSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPS 1370
A L L F+ + G+ G+ +SH + + + +L
Sbjct: 127 AAKLPPALLRLFLAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTE 186
Query: 1371 RHIALCLDPYCGLGFALWVLSSVYSGHHSILIP-PSEVEVNPALWLSAVSQYRVR----- 1424
+ L + G + +L + +G + P P + + L + Y+
Sbjct: 187 DVLLGALPLFHAFGLTVTLLLPLLTGLRVVYYPNPLDAKKIAEL----IRDYKATILCGT 242
Query: 1425 DTFCSYGVMELCTKGLSGSIPQLKARNIALGC---VRTCVVVAEERPRIHLTSAFSKLFS 1481
TF ARN +R V AE KL
Sbjct: 243 PTFLRG-----------------YARNAHPEDFSSLRLVVAGAE------------KL-- 271
Query: 1482 ALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLL 1541
P A F + I I L+G + E S V V+ P ++
Sbjct: 272 -----PEATRELFEEKFGIRI-LEGYGATECSPVIS---------VNTPMGNKPGTV--- 313
Query: 1542 ESGKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYF 1583
G+ LPG++V I +PET + G + V+ P+ SGY
Sbjct: 314 --GRPLPGIEVRIVSPETHEELPIGEGGLLLVRGPNVMSGYL 353
>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain. This model
represents a domain responsible for the specific
recognition of amino acids and activation as adenylyl
amino acids. The reaction catalyzed is aa + ATP -> aa-AMP
+ PPi. These domains are usually found as components of
multi-domain non-ribosomal peptide synthetases and are
usually called "A-domains" in that context (for a review,
see ). A-domains are almost invariably followed by
"T-domains" (thiolation domains, pfam00550) to which the
amino acid adenylate is transferred as a thiol-ester to a
bound pantetheine cofactor with the release of AMP (these
are also called peptide carrier proteins, or PCPs. When
the A-domain does not represent the first module
(corresponding to the first amino acid in the product
molecule) it is usually preceded by a "C-domain"
(condensation domain, pfam00668) which catalyzes the
ligation of two amino acid thiol-esters from neighboring
modules. This domain is a subset of the AMP-binding
domain found in Pfam (pfam00501) which also hits
substrate--CoA ligases and luciferases. Sequences scoring
in between trusted and noise for this model may be
ambiguous as to whether they activate amino acids or
other molecules lacking an alpha amino group.
Length = 409
Score = 61.9 bits (151), Expect = 1e-09
Identities = 85/487 (17%), Positives = 166/487 (34%), Gaps = 84/487 (17%)
Query: 1200 TCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPHP 1259
T +L +RA R+ L + GD VA++ +L+ A L GA V + P +P
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60
Query: 1260 QNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDMPKKKL 1319
+ I++ + + L+L++ + L V + + DD P
Sbjct: 61 A------ERLAFILEDAGARLLLTDSALASRL--AGLVLPVILLDPLELAALDDAPAPPP 112
Query: 1320 AALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDP 1379
P LAY+ ++ +TG G+ ++H ++ +L + L
Sbjct: 113 PDAPSGPDD--LAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLA-RRYGLDPDDRVLQFAS 169
Query: 1380 YCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKG 1439
+ ++ +G ++ P E + AL + ++++ V + ++ L
Sbjct: 170 LSFDASVEEIFGALLAGATLVVPPEDEERDDAALLAALIAEHPVTVLNLTPSLLALL--- 226
Query: 1440 LSGSIPQLKARNIALGCVRTCVVVAEERP-----RIHLTSAFSKLFSALGLSPRAVSTSF 1494
A AL +R ++ E R ++L + G + V ++
Sbjct: 227 -------AAALPPALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTA 279
Query: 1495 GCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLPGVKVII 1554
+ A P + G+ L ++ +
Sbjct: 280 -----TLVDPDDAPRESPVPI----------------------------GRPLANTRLYV 306
Query: 1555 ANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGE-LYARTG 1613
+ + + +GE+++ P A GY A++F G G LY RTG
Sbjct: 307 LDDDLR-PVPVGVVGELYIGGPGVARGYL---NRPELTAERFVPDPFAGGDGARLY-RTG 361
Query: 1614 YLGFLRRTSPAGVAGAPVPPGVSKLHDAVFVVGALDETIMLRGMRYHPIDIENSVMRAHK 1673
L R P G + +G +D+ + +RG R +IE + + H
Sbjct: 362 DLV---RYLPDGN---------------LEFLGRIDDQVKIRGYRIELGEIE-AALLRHP 402
Query: 1674 KIAECAV 1680
+ E V
Sbjct: 403 GVREAVV 409
Score = 51.5 bits (124), Expect = 3e-06
Identities = 55/271 (20%), Positives = 100/271 (36%), Gaps = 30/271 (11%)
Query: 114 TYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAGIV 173
TY +L R+ ++A L + + GDR+A++ + + A + AG
Sbjct: 1 TYRELDERANRLARHLR-------AAGGVGPGDRVAVLLERS--AELVVAILAVLKAGAA 51
Query: 174 PVPIEV--PLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKLT 231
VP++ P R F+L ++ LT A L ++ L
Sbjct: 52 YVPLDPAYPAERLA-------FILEDAGARLLLTDSALASRLAGLVLPVIL-------LD 97
Query: 232 WFVTEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACH 291
L P P D AY+ YT+ G GV VT ++++ L +
Sbjct: 98 PLELAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYG 157
Query: 292 YTEGENMVCVLDFKRETGLWHSVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVA 351
+ ++ + + + ++L G V P + + A +I ++ V
Sbjct: 158 LDPDDRVLQFASLSFDASVE-EIFGALLAGATLVVPPEDEERDDAALLAALIAEH--PVT 214
Query: 352 VVKSRDLHWGLLATKDHKDISLSSLRLLLVG 382
V+ LLA +L+SLRL+++G
Sbjct: 215 VLNLTPSLLALLA--AALPPALASLRLVILG 243
Score = 43.0 bits (102), Expect = 0.001
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 808 TCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPHP 867
T +L +RA R+ L + GD VA++ +L+ A L GA V + P +P
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60
Query: 868 Q 868
Sbjct: 61 A 61
Score = 36.5 bits (85), Expect = 0.13
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 911 TCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCL 956
T +L +RA R+ L + GD VA++ +L+ A L
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVL 46
Score = 33.4 bits (77), Expect = 1.2
Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 8/68 (11%)
Query: 491 EVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDT--YTRSGLLGFLGPGGL 548
VGE+ + G Y P L+ F + D A Y R+G L P G
Sbjct: 318 VVGELYIGGPGVARGYLNRPELTAERF-----VPDPFAGGDGARLY-RTGDLVRYLPDGN 371
Query: 549 VFVCGSRD 556
+ G D
Sbjct: 372 LEFLGRID 379
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated.
Length = 523
Score = 61.5 bits (150), Expect = 3e-09
Identities = 55/263 (20%), Positives = 87/263 (33%), Gaps = 59/263 (22%)
Query: 111 ITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFA 170
+ TY +L + +VA LL + LK GDR+A + N+D + + C A
Sbjct: 35 RSWTYAELDAAVNRVAAALL--------DLGLKKGDRVAALGHNSD--AYALLWLACARA 84
Query: 171 GIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKL 230
G V VP+ LT + + ++L + L A A V +
Sbjct: 85 GAVHVPVNFMLTGEE-----LAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLV 139
Query: 231 T--------WFVTEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVT-VTRAAMLS 281
W A+ P L DD A I YT+ G + + AML+
Sbjct: 140 LGGREAPGGWLDFADWAEAGSVAEPDVELADDDLAQILYTS-------GTESLPKGAMLT 192
Query: 282 HCRALTQ-------ACHYTEGENMVCVLDFKRETGLWHSVLTSVLNGMHAVYIPYALM-- 332
H RAL A + + + L L+H + PY +
Sbjct: 193 H-RALIAEYVSCIVAGDMSADDIPLHALP------LYHCA------QLDVFLGPYLYVGA 239
Query: 333 ------KVNPASWMQMITKYRAS 349
+P ++ I R +
Sbjct: 240 TNVILDAPDPELILRTIEAERIT 262
Score = 36.4 bits (85), Expect = 0.14
Identities = 48/241 (19%), Positives = 86/241 (35%), Gaps = 22/241 (9%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 1258
T ++L RV A LL+ + GD VA + + C GAV V
Sbjct: 37 WTYAELDAAVNRVAAALLDLG-LKKGDRVAALGHNSDAYALLWLACARAGAVHV------ 89
Query: 1259 PQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDMPKKK 1318
P N T + I+D S + L + + ++ A VD +L + P
Sbjct: 90 PVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLVLGGREAPGGW 149
Query: 1319 L--AALYRA---------PTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACEL 1367
L A A + LA + ++ T + G ++H A+ + S +A ++
Sbjct: 150 LDFADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDM 209
Query: 1368 YPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTF 1427
L Y +++ +Y G ++++ +P L L + R+ F
Sbjct: 210 SADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILD----APDPELILRTIEAERITSFF 265
Query: 1428 C 1428
Sbjct: 266 A 266
>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein]
ligase; Validated.
Length = 525
Score = 60.9 bits (148), Expect = 4e-09
Identities = 75/331 (22%), Positives = 122/331 (36%), Gaps = 47/331 (14%)
Query: 239 AKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENM 298
A T + A PA ++ T G+ ++ A+LS+ R L ++
Sbjct: 138 AHTNRS-ASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDV 196
Query: 299 VCV-LDFKRETGLWHSVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRD 357
C L + GL +LT+ L G P +P W+ ++ RA+ + + +
Sbjct: 197 GCSWLPLYHDMGL-AFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRAT--LTAAPN 253
Query: 358 LHWGLLATKDHK--DISLSSLRLLLVGDGANPWSLSSCDQFLSVFQSKGLRPDAICPC-- 413
+ L+ + D+ L +LR+ L +G P ++F + G A P
Sbjct: 254 FAYNLIGKYARRVSDVDLGALRVAL--NGGEPVDCDGFERFATAMAPFGFDAGAAAPSYG 311
Query: 414 ASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQVMPGC 473
+ S C V+V PG GL V D + + G +PG
Sbjct: 312 LAESTC-AVTVPVPG--------------IGLRVDEVTTDDGSGARRHAV--LGNPIPGM 354
Query: 474 IMTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDT 533
+ + D + + E+GEI + S Y G + D
Sbjct: 355 EVRISPGDGAAGV-AGREIGEIEIRGASMMSGYLG-----------------QAPIDPDD 396
Query: 534 YTRSGLLGFLGPGGLVFVCGSRDGLMTVTGR 564
+ +G LG+L GGLV VCG L+TV GR
Sbjct: 397 WFPTGDLGYLVDGGLV-VCGRAKELITVAGR 426
Score = 57.5 bits (139), Expect = 5e-08
Identities = 101/478 (21%), Positives = 167/478 (34%), Gaps = 92/478 (19%)
Query: 1202 SQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGA----VPVTIRPP 1257
++H RAE V A LL+R + V L+ P ++L+ A G GA +P +R
Sbjct: 35 PEVHGRAENVAARLLDRDRPGA---VGLVGEPTVELVAAIQGAWLAGAAVSILPGPVRGA 91
Query: 1258 HPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDMPKK 1317
T + V VLS+ + ++ L++ ++S V D
Sbjct: 92 DDGRWADATLTRFAGIGVR---TVLSHGSHLERLRAVDSSVTVH--------DLATAAHT 140
Query: 1318 KLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCL 1377
+A P + A L + +TG +S AV S R + L + +
Sbjct: 141 NRSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSW 200
Query: 1378 DP-YCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFC---SYGVM 1433
P Y +G A ++L++ +G L P + +P WLS +S R T +Y ++
Sbjct: 201 LPLYHDMGLA-FLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLI 259
Query: 1434 ELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERP-RIHLTSAFSKLFSALGLSPRAVST 1492
G + ++ LG +R + E P F+ + G A +
Sbjct: 260 -----GKYAR----RVSDVDLGALRVALNGGE--PVDCDGFERFATAMAPFGFDAGAAAP 308
Query: 1493 SFG-----CRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLL 1547
S+G C V + P P LR D V+ + +L G +
Sbjct: 309 SYGLAESTCAV---------TVPVPGI------GLRVDEVTTDDGSGARRHAVL--GNPI 351
Query: 1548 PGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGE 1607
PG++V I+ + +GEI ++ SGY G
Sbjct: 352 PGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYL---GQAPIDPDD------------ 396
Query: 1608 LYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDAVFVVGALDETIMLRGMRYHPIDIE 1665
+ TG LG+L + + V G E I + G P +IE
Sbjct: 397 -WFPTGDLGYL-------------------VDGGLVVCGRAKELITVAGRNIFPTEIE 434
Score = 32.0 bits (73), Expect = 3.3
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 810 SQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 864
++H RAE V A LL+R + V L+ P ++L+ A G GA V+I P
Sbjct: 35 PEVHGRAENVAARLLDRDRPGA---VGLVGEPTVELVAAIQGAWLAGAA-VSILP 85
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
[Lipid metabolism].
Length = 528
Score = 59.6 bits (145), Expect = 1e-08
Identities = 56/290 (19%), Positives = 97/290 (33%), Gaps = 39/290 (13%)
Query: 112 TLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAG 171
LTYG L ++A L + GDR+A+ PN+ + A G
Sbjct: 40 ELTYGDLRREVARLANAL--------KDLGGVKGDRVAIYMPNS--PEAVIALLATARIG 89
Query: 172 IVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLP--------KTAAGEVVA 223
+P + ++ + + +V + D + VV
Sbjct: 90 AIPAVVS-----PGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVV 144
Query: 224 FKGWPKLTWFVTEHLAKTPKDWAPQPRLTDDTPAYIEYT---TDRDGSVMGVTVTRAAML 280
W+ E + K + + +P DD P ++ YT T G G+ + L
Sbjct: 145 VPR--LGLWY-DEAVEKASEKFEFEPLPADD-PLFLLYTSGTT---GKPKGIVHSHGGYL 197
Query: 281 SHCRALTQACH-YTEGENMVCVLDFKRETGLWHSVLTSVLNGMHAVYIPYALMKVNPASW 339
R + G+ D GLW+SV + + +G + +P
Sbjct: 198 VEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGA-TTVLYDGRPFYSPERL 256
Query: 340 MQMITKYRASVAVVKSRDLHWGLLATKDH-KDISLSSLRLLL-VGDGANP 387
+ + KY+ V + + L + LSSLR+L G+ NP
Sbjct: 257 WEALEKYK--VTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPLNP 304
Score = 50.8 bits (122), Expect = 5e-06
Identities = 48/248 (19%), Positives = 86/248 (34%), Gaps = 34/248 (13%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTI---R 1255
LT L + R+ L + + GD VA+ P + + A +GA+P +
Sbjct: 41 LTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGL 99
Query: 1256 PPHPQNLQTTLPTVRMIVDVSKSVLVLSNQ------NVIKLLKSKEASNVVDIKSWPTIL 1309
V + +++++ I LL+ +A + L
Sbjct: 100 SAE---------AVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLGL 150
Query: 1310 DTDDMPKKKLAALYRAPT-AEMLAYLDFSVSTTGMLAGIKMSHAA-VTSLCRSMKLACEL 1367
D+ +K P A+ +L ++ TTG GI SH + + K +L
Sbjct: 151 WYDEAVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDL 210
Query: 1368 YPS-RH--IALCLDPYCGLGFALWVLSSVYSGHHS---ILIPPSEVEVNPALWLSAVSQY 1421
P R + DP G+ + SV+S S ++ +P A+ +Y
Sbjct: 211 LPGDRFWNSS---DP----GWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKY 263
Query: 1422 RVRDTFCS 1429
+V S
Sbjct: 264 KVTIFGTS 271
Score = 44.6 bits (106), Expect = 4e-04
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 807 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTI 862
LT L + R+ L + + GD VA+ P + + A +GA+P +
Sbjct: 41 LTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATARIGAIPAVV 95
Score = 38.0 bits (89), Expect = 0.044
Identities = 50/220 (22%), Positives = 78/220 (35%), Gaps = 47/220 (21%)
Query: 1542 ESGKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYF-SLYGDESEYAQQFSARL 1600
SG LPG V + E G +GE+ V+ P G + + D Y + + R
Sbjct: 342 SSGLPLPGYAVRRVDDE--GNPVPPGVGELVVRLPW--PGMALTYWNDPERYKEAYFGRW 397
Query: 1601 -VTGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDAVFVVGALDETIMLRGMRY 1659
TG+ E + ++ G D+ I + G R
Sbjct: 398 YRTGDWAERDEDGYF----------------------------WLHGRSDDVIKVSGKRI 429
Query: 1660 HPIDIENSVMRAHKKIAECAVF---TWTNLLVV---VVELDGNESEAL--DLVPLVTNAV 1711
P++IE+ ++ AH +AE AV +V VV G E L ++ V +
Sbjct: 430 GPLEIESVLL-AHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPNELAEEIRRHVARNI 488
Query: 1712 LEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQ 1751
H I VD +P + G+ QR LR +
Sbjct: 489 G--PHAIPRKIRFVD--ELPKTASGKIQRRLLRKILHKGE 524
Score = 33.0 bits (76), Expect = 1.4
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 910 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCL 956
LT L + R+ L + + GD VA+ P + + A
Sbjct: 41 LTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATA 86
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL). 4-Coumarate:coenzyme A
ligase is a key enzyme in the phenylpropanoid metabolic
pathway for monolignol and flavonoid biosynthesis. It
catalyzes the synthesis of hydroxycinnamate-CoA
thioesters in a two-step reaction, involving the
formation of hydroxycinnamate-AMP anhydride and the
nucleophilic substitution of AMP by CoA. The
phenylpropanoid pathway is one of the most important
secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 504
Score = 57.6 bits (140), Expect = 4e-08
Identities = 103/492 (20%), Positives = 177/492 (35%), Gaps = 95/492 (19%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 1258
LT ++L + R+ A L R GD V L+ P ++ F L GAV T P
Sbjct: 33 LTYAELERLVRRLAAGLAARG-GRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVTTANP-- 89
Query: 1259 PQNLQTTLPTVRMI---VDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDMP 1315
L T I V S + L ++ + + L S VV + S D
Sbjct: 90 -------LYTPAEIAKQVKDSGAKLAITTSELAEKLASLALEPVVLLDSADDGSAAIDDL 142
Query: 1316 KKKLAALYRAP--TAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHI 1373
+ +A L +S TTG G+ ++H + + + R
Sbjct: 143 LFADEPEPPVVVIKQDDVAALPYSSGTTGRSKGVMLTHRNLIANVAQLVAGEGPNFDRED 202
Query: 1374 A-LCLDPYCGL-GFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYG 1431
LC+ P + G + +L+ + G +++P ++E +L+A+ +Y+V
Sbjct: 203 VTLCVLPMFHIYGLTVILLALLRLGATVVVMPRFDLE----KFLAAIEKYKVTHLPVV-- 256
Query: 1432 VMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIH--LTSAFSKLFSALGLSPRA 1489
P I L V+ +V + + + A + LG +
Sbjct: 257 -------------PP-----IVLALVKHPIVDKYDLSSLKQIGSGA-----APLG---KE 290
Query: 1490 VSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLPG 1549
++ +F R QG E S V + + GS G+L+P
Sbjct: 291 LAEAFRARFPGVELGQGYGMTESSPVT----TMCPVPEKDPKPGS--------VGRLVPN 338
Query: 1550 VKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELY 1609
V+ I +PET + GE+WV+ P GY + A+ + +
Sbjct: 339 VEAKIVDPETGESLPPNQPGELWVRGPQVMKGYL---NNPEATAETI--------DKDGW 387
Query: 1610 ARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDA-VFVVGALDETIMLRGMRYHPIDIENSV 1668
TG LG+ D +F+V L E I +G + P ++E ++
Sbjct: 388 LHTGDLGYFD-------------------EDGYLFIVDRLKELIKYKGFQVAPAELE-AL 427
Query: 1669 MRAHKKIAECAV 1680
+ +H +IA+ AV
Sbjct: 428 LLSHPEIADAAV 439
Score = 39.9 bits (94), Expect = 0.011
Identities = 69/364 (18%), Positives = 123/364 (33%), Gaps = 67/364 (18%)
Query: 91 GSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIAL 150
++ + A + G+ LTY +L ++A L + + GD + L
Sbjct: 14 FASEFGDRPALIDAATGR---ALTYAELERLVRRLAAGL--------AARGGRKGDVVLL 62
Query: 151 VYPNNDPINFLCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACL 210
+ PN+ + F F + AG V T + Q + ++A+T+
Sbjct: 63 LSPNS--LEFPVVFLAVLSAGAVVTTANPLYTPAEIAKQ-----VKDSGAKLAITTSELA 115
Query: 211 KGLPKTAAGEVVAFKGWPKLTWFVTEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVM 270
+ L A VV + + L + P + D A + Y++ G
Sbjct: 116 EKLASLALEPVVLLDSADDGSAA-IDDLLFADEPEPPVVVIKQDDVAALPYSSGTTGRSK 174
Query: 271 GVTVTRAAMLSHCRALTQACHYTEGEN--------MVCVLDFKRETGLWHSVLTSVLNGM 322
GV ML+H + GE +CVL GL +L + G
Sbjct: 175 GV------MLTHRNLIANVAQLVAGEGPNFDREDVTLCVLPMFHIYGLTVILLALLRLGA 228
Query: 323 HAVYIPYALMKVNPASWMQMITKYRAS---------VAVVKSRDLHWGLLATKDHKDISL 373
V +P + + ++ I KY+ + +A+VK + L
Sbjct: 229 TVVVMP----RFDLEKFLAAIEKYKVTHLPVVPPIVLALVKHPIV----------DKYDL 274
Query: 374 SSLRLLLVGDGANPWSLSSCDQFLSVF------QSKGLRPDAICPCASSSECLTVSVRRP 427
SSL+ +G GA P + F + F Q G+ + ++ + +P
Sbjct: 275 SSLK--QIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESS---PVTTMCPVPEKDPKP 329
Query: 428 GRAG 431
G G
Sbjct: 330 GSVG 333
>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related
proteins [Secondary metabolites biosynthesis, transport,
and catabolism].
Length = 642
Score = 54.6 bits (131), Expect = 4e-07
Identities = 47/231 (20%), Positives = 93/231 (40%), Gaps = 23/231 (9%)
Query: 1195 AAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTI 1254
Q LT ++L RA R+ A LL + G+ VA++ ++L+ A L GA V +
Sbjct: 249 GGQQLTYAELDARANRL-ARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPL 307
Query: 1255 RPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDM 1314
P +P + I++ S+ L+L+ ++ L DD
Sbjct: 308 DPLYPAE------RLAYILEDSRPTLLLTQAHLRVDDVGLP------------GLALDDA 349
Query: 1315 PKKKLAA--LYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRH 1372
+ + +A + LAY+ ++ +TG G+++ H A+ +L L +
Sbjct: 350 LSEIPDTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGL-DADD 408
Query: 1373 IALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 1423
L L + ++ G +++ P+ ++V+PA L + +
Sbjct: 409 RVLALASLSFDASVFEIFGALLEG-ARLVLAPALLQVDPAALLELLEAQGI 458
Score = 48.8 bits (116), Expect = 2e-05
Identities = 54/306 (17%), Positives = 110/306 (35%), Gaps = 36/306 (11%)
Query: 87 IQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGD 146
+ P A L G LTY +L +R+ ++A L + G+
Sbjct: 230 HLLFEEQAATTPDAVALVRGG---QQLTYAELDARANRLARLL--------ISLGVGPGE 278
Query: 147 RIALVYPNNDPINFLCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTS 206
+A++ + + + A + AG VP++ ++++ ++L + LT
Sbjct: 279 TVAIL--ADRSLELVVALLAVLKAGAAYVPLD-----PLYPAERLAYILEDSRPTLLLTQ 331
Query: 207 DACLKGLPKTAAGEVVAFKGWPKLTWFVTEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRD 266
+ + L++ P L D AYI YT+
Sbjct: 332 AHL-------------RVDDVGLPGLALDDALSEIPDTDPIPQALLGDALAYIIYTSGST 378
Query: 267 GSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFKRETGLWHSVLTSVLNGMHAVY 326
G GV + A+ + + ++ + + ++ + ++L G +
Sbjct: 379 GQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVFE-IFGALLEG-ARLV 436
Query: 327 IPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKDHKD--ISLSSLRLLLVGDG 384
+ AL++V+PA+ ++++ +V ++ L LL D LR LL G
Sbjct: 437 LAPALLQVDPAALLELLEAQGITVLLLVPLLLR-LLLLAALAPDLISPCERLRQLLSGGE 495
Query: 385 ANPWSL 390
A P +L
Sbjct: 496 ALPLAL 501
Score = 40.7 bits (95), Expect = 0.008
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 777 ISEILKWRAASTSEHVIFTLLNSKGSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVA 836
I + + +AA+T + V Q LT ++L RA R+ A LL + G+ VA
Sbjct: 229 IHLLFEEQAATTPDAVALVR------GGQQLTYAELDARANRL-ARLLISLGVGPGETVA 281
Query: 837 LIFPPGIDLICAFYGCLYVGAVPVTIRPPHPQ 868
++ ++L+ A L GA V + P +P
Sbjct: 282 ILADRSLELVVALLAVLKAGAAYVPLDPLYPA 313
Score = 31.5 bits (71), Expect = 5.5
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 870 LQTTLPTHQFISEILKWRAASTSEHVIFTLLNSKGSAAQLLTCSQLHKRAERVGALLLER 929
L +P I + + +AA+T + V Q LT ++L RA R+ A LL
Sbjct: 219 LAAPIPLRLTIHLLFEEQAATTPDAVALVR------GGQQLTYAELDARANRL-ARLLIS 271
Query: 930 AKINTGDHVALIFPPGIDLICAFYGCL 956
+ G+ VA++ ++L+ A L
Sbjct: 272 LGVGPGETVAILADRSLELVVALLAVL 298
>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase
A-associated. This group of proteins contains an
AMP-binding domain (pfam00501) associated with acyl
CoA-ligases. These proteins are generally found in
genomes containing the exosortase/PEP-CTERM protein
expoert system , specifically the type 1 variant of this
system described by the Genome Property GenProp0652.
When found in this context they are invariably present
next to a decarboxylase enzyme. A number of sequences
from Burkholderia species also hit this model, but the
genomic context is obviously different. The hypothesis
of a constant substrate for this family is only strong
where the exosortase context is present.
Length = 517
Score = 54.0 bits (130), Expect = 5e-07
Identities = 69/295 (23%), Positives = 113/295 (38%), Gaps = 39/295 (13%)
Query: 112 TLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAG 171
TLTY L R L +A L L G+R+A+ + + A +G AG
Sbjct: 25 TLTYAALSERVLALASGLRGL--------GLARGERVAIYLDKR--LETVTAMFGAALAG 74
Query: 172 IVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAG----EVVAFKGW 227
V VPI PL + +Q+ +L C++++ +TS L L G + G
Sbjct: 75 GVFVPIN-PLLKA----EQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLIIVGD 129
Query: 228 PKLTWFVTEHLAKTPKDWA---------PQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAA 278
P H + P W P + D A I YT+ G GV ++
Sbjct: 130 PAHA--SEGHPGEEPASWPKLLALGDADPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRN 187
Query: 279 MLSHCRALTQACHYTEGENMVCVLDFKRETGLWHSVLTSVLNGMHAVYIPYALMKVNPAS 338
+++ +++ + ++ VL + G + + T+ G V Y L P
Sbjct: 188 LVAGAQSVATYLENRPDDRLLAVLPLSFDYGF-NQLTTAFYVGATVVLHDYLL----PRD 242
Query: 339 WMQMITKYRAS-VAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGANPWSLSS 392
++ + K+ + +A V W LA D + + SLR L GA P + S
Sbjct: 243 VLKALEKHGITGLAAVPPL---WAQLAQLDWPESAAPSLRYLTNSGGAMPRATLS 294
Score = 32.1 bits (73), Expect = 3.2
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 805 QLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 864
+ LT + L +R + + L + G+ VA+ ++ + A +G G V V I P
Sbjct: 24 RTLTYAALSERVLALASGLRGLG-LARGERVAIYLDKRLETVTAMFGAALAGGVFVPINP 82
Score = 32.1 bits (73), Expect = 3.2
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 1197 QLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 1256
+ LT + L +R + + L + G+ VA+ ++ + A +G G V V I P
Sbjct: 24 RTLTYAALSERVLALASGLRGLG-LARGERVAIYLDKRLETVTAMFGAALAGGVFVPINP 82
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate
forming enzymes. This family contains benzoate CoA
ligase (BCL) and related ligases that catalyze the
acylation of benzoate derivatives, 2-aminobenzoate and
4-hydroxybenzoate. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Xenobiotic aromatic compounds are
also a major class of man-made pollutants. Some bacteria
use benzoate as the sole source of carbon and energy
through benzoate degradation. Benzoate degradation starts
with its activation to benzoyl-CoA by benzoate CoA
ligase. The reaction catalyzed by benzoate CoA ligase
proceeds via a two-step process; the first ATP-dependent
step forms an acyl-AMP intermediate, and the second step
forms the acyl-CoA ester with release of the AMP.
Length = 436
Score = 53.5 bits (129), Expect = 6e-07
Identities = 100/519 (19%), Positives = 172/519 (33%), Gaps = 164/519 (31%)
Query: 1193 RSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPV 1252
Q LT +LH A R +L ++ GD V L+ P +L+ AF CL GAV V
Sbjct: 5 YCGEQSLTYRELHDLANRFANVLRALG-VSPGDRVLLLLPDSPELVAAFLACLKAGAVAV 63
Query: 1253 TIRPP-HPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDT 1311
+ P PQ+L ++ D ++LV
Sbjct: 64 ALNPLLTPQDL------EHILDDSGAALLVTE---------------------------- 89
Query: 1312 DDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSR 1371
A+ +AY ++ TTG G+ H R E +
Sbjct: 90 ----------------ADDIAYWLYTSGTTGKPKGVMHRH-------RDPLTFAEAFARE 126
Query: 1372 HIALCLDPYC----------GLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQY 1421
+ L GLG +L ++SG ++L+P P L ++++
Sbjct: 127 LLGLQPGDRIFSSSKLFFAYGLGNSLLF--PLFSGASAVLLPG---WPTPEAVLDLLARH 181
Query: 1422 RVRDTF---CSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSK 1478
R F Y + + VR CV SA
Sbjct: 182 RPTVLFGVPALYRAL----------LESGAGSAPLFRSVRLCV------------SAGEA 219
Query: 1479 LFSALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSL 1538
L + L + + G + L G S E +++ ++R G+
Sbjct: 220 LPAGLA---ERWAEATGIEI-----LDGIGSTEVLHIFI------SNRPGAARPGT---- 261
Query: 1539 CLLESGKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSA 1598
+G+ +PG + + + + + +G++WV+ P A GY++L ++++
Sbjct: 262 ----TGRPVPGYEARLVDESGR-EVPAGTVGDLWVRGPSLAPGYWNL-PEKTQ------R 309
Query: 1599 RLVTG--NTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDAVFVVGALDETIMLRG 1656
L G TG+ ++R G G D+ I + G
Sbjct: 310 TLRDGWLRTGDRFSR----------DADG---------------WYRYQGRADDMIKVSG 344
Query: 1657 MRYHPIDIENSVMRAHKKIAECAVFTWTNLLVVVVELDG 1695
P+++E + + H +AE AV V V + DG
Sbjct: 345 QWVSPLEVE-AALGEHPAVAEAAV-------VAVPDEDG 375
Score = 49.3 bits (118), Expect = 1e-05
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 803 AAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTI 862
Q LT +LH A R +L ++ GD V L+ P +L+ AF CL GAV V +
Sbjct: 7 GEQSLTYRELHDLANRFANVLRALG-VSPGDRVLLLLPDSPELVAAFLACLKAGAVAVAL 65
Query: 863 RP 864
P
Sbjct: 66 NP 67
Score = 46.6 bits (111), Expect = 9e-05
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 112 TLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAG 171
+LTY +L + + A L + GDR+ L+ P D + AF C+ AG
Sbjct: 10 SLTYRELHDLANRFANVLR--------ALGVSPGDRVLLLLP--DSPELVAAFLACLKAG 59
Query: 172 IVPVPIEVPLTRRD 185
V V + LT +D
Sbjct: 60 AVAVALNPLLTPQD 73
Score = 36.6 bits (85), Expect = 0.12
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 906 AAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCL 956
Q LT +LH A R +L ++ GD V L+ P +L+ AF CL
Sbjct: 7 GEQSLTYRELHDLANRFANVLRALG-VSPGDRVLLLLPDSPELVAAFLACL 56
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional.
Length = 5163
Score = 54.2 bits (130), Expect = 8e-07
Identities = 98/481 (20%), Positives = 163/481 (33%), Gaps = 87/481 (18%)
Query: 76 PSGLPRNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPIN 135
P PR QR +AP A + + L+Y +L SR+ ++A+ L
Sbjct: 1996 PEAYPRGPGVH-QRIAEQAARAPEAIAVVFGDQ---HLSYAELDSRANRLAHRLR----- 2046
Query: 136 RTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAG--IVPVPIEVPLTRRDAGSQQIGF 193
+ R+A+ + + + A + AG VP+ P R + +
Sbjct: 2047 ---ARGVGPEVRVAIAAERSFEL--VVALLAVLKAGGAYVPLDPNYPAER-------LAY 2094
Query: 194 LLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKLTWFVTEHLAKTPKDWAPQPRLTD 253
+L + LT L+ LP A G +L A P D AP +L
Sbjct: 2095 MLEDSGAALLLTQRHLLERLPLPA--------GVARLPLDRDAEWADYP-DTAPAVQLAG 2145
Query: 254 DTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFKRET--GLW 311
+ AY+ YT+ G GV V+ A+++HC+A + + + C L F + G
Sbjct: 2146 ENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPAD---CELQFMSFSFDGAH 2202
Query: 312 HSVLTSVLNGMHAVYIPYALMKVNPAS-WM--QMI-TKYRASVAVVKSRDLHWGLLATKD 367
+LNG A + + W Q+ R V ++ ++ LA
Sbjct: 2203 EQWFHPLLNG--------ARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHA 2254
Query: 368 HKDISLSSLRLLLVGDGANPWSLSSCDQFLSVFQSKGLRPDAICPCASSSECLTVSVRRP 427
+D ++R+ G A +S + LRP +
Sbjct: 2255 ERDGRPPAVRVYCFGGEA--VPAASLRL-----AWEALRPVYL----------------- 2290
Query: 428 GRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQVMPGCIMTVVKMDSPSYLC 487
N G ++ L + D + + G I +D+ L
Sbjct: 2291 ----FNGYGPTEAVVTPLLWKCRPQDPCGAAYVPIGRALGN-RRAYI-----LDADLNLL 2340
Query: 488 KTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTAL--SQD--TYTRSGLLGFL 543
GE+ + G Y PGL+ F P A G L + D Y G++ +L
Sbjct: 2341 APGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYL 2400
Query: 544 G 544
G
Sbjct: 2401 G 2401
Score = 49.6 bits (118), Expect = 2e-05
Identities = 35/178 (19%), Positives = 74/178 (41%), Gaps = 19/178 (10%)
Query: 1196 AQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIR 1255
+ LT ++L++RA R+ L+ R + V + +++ L G V +
Sbjct: 4574 EEKLTYAELNRRANRLAHALIARG-VGPEVLVGIAMERSAEMMVGLLAVLKAGGAYVPLD 4632
Query: 1256 PPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDI---KSWPTILDTD 1312
P +P+ M+ D S + L+L+ ++++ L + + + + W D
Sbjct: 4633 PEYPRE-----RLAYMMED-SGAALLLTQSHLLQRLPIPDGLASLALDRDEDWEGFPAHD 4686
Query: 1313 DMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPS 1370
P +L + LAY+ ++ +TG G+ +SH ++ + + EL P
Sbjct: 4687 --PAVRLHP-------DNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGERYELTPD 4735
Score = 47.6 bits (113), Expect = 8e-05
Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 19/177 (10%)
Query: 1197 QLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 1256
Q L+ ++L RA R+ L R + VA+ +L+ A L G V + P
Sbjct: 2027 QHLSYAELDSRANRLAHRLRARG-VGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDP 2085
Query: 1257 PHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKS---WPTILDTDD 1313
+P M+ D S + L+L+ +++++ L + + W DT
Sbjct: 2086 NYP-----AERLAYMLED-SGAALLLTQRHLLERLPLPAGVARLPLDRDAEWADYPDTA- 2138
Query: 1314 MPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPS 1370
P +LA E LAY+ ++ +TG+ G+ +SH A+ + C++ EL P+
Sbjct: 2139 -PAVQLAG-------ENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPA 2187
Score = 44.2 bits (104), Expect = 8e-04
Identities = 89/460 (19%), Positives = 146/460 (31%), Gaps = 84/460 (18%)
Query: 112 TLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAG 171
LTY +L R+ ++A+ L+ + + + + + + + AG
Sbjct: 4576 KLTYAELNRRANRLAHALIARGVGPEV--------LVGIAMERS--AEMMVGLLAVLKAG 4625
Query: 172 --IVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPK 229
VP+ E P R + +++ + LT L+ LP G
Sbjct: 4626 GAYVPLDPEYPRER-------LAYMMEDSGAALLLTQSHLLQRLP--------IPDGLAS 4670
Query: 230 LTWFVTEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQA 289
L E P P RL D AY+ YT+ G GV V+ ++++H A +
Sbjct: 4671 LALDRDEDWEGFP-AHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGER 4729
Query: 290 CHYTEGENMVCVLDFKRETGLWHSVLTSVLNGMH------AVYIPYALMKVNPASWMQMI 343
T + VL F S S H +V I + +P I
Sbjct: 4730 YELTPDD---RVLQFMS-----FSFDGSHEGLYHPLINGASVVIRDDSLW-DPERLYAEI 4780
Query: 344 TKYRASVAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGANPWSLSSCDQFLSVFQSK 403
++R +V V ++ LA +D SLR+ G A +S D +
Sbjct: 4781 HEHRVTVLVFPP--VYLQQLAEHAERDGEPPSLRVYCFGGEAVA--QASYDLAW-----R 4831
Query: 404 GLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTL 463
L+P + +E + R G G +Y +
Sbjct: 4832 ALKPVYLFNGYGPTETTVTVLLWKARDGD---------ACGAAYMPI------------- 4869
Query: 464 QDCGQVMPGCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLL 523
G + V +D GE+ + G Y P L+ F P
Sbjct: 4870 ---GTPLGNRSGYV--LDGQLNPLPVGVAGELYLGGEGVARGYLERPALTAERFVPDPFG 4924
Query: 524 ADGTALSQDTYTRSGLLGFLGPGGLVFVCGSRDGLMTVTG 563
A G L R+G L G++ G D + + G
Sbjct: 4925 APGGRL-----YRTGDLARYRADGVIDYLGRVDHQVKIRG 4959
Score = 43.4 bits (102), Expect = 0.002
Identities = 52/282 (18%), Positives = 103/282 (36%), Gaps = 32/282 (11%)
Query: 111 ITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFA 170
TL Y +L R+ ++A+ L+ E + + + + I + A + A
Sbjct: 535 ETLDYAELNRRANRLAHALI--------ERGVGPDVLVGVAMERS--IEMVVALLAILKA 584
Query: 171 G--IVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWP 228
G VP+ E P R + ++L +Q+ L+ + LP A +V+
Sbjct: 585 GGAYVPLDPEYPAER-------LAYMLEDSGVQLLLSQSHLGRKLPLAAGVQVLDLD--- 634
Query: 229 KLTWFVTEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQ 288
+ ++ + + P L + AY+ YT+ G G A+ + + Q
Sbjct: 635 RPAAWLEGY-----SEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQ 689
Query: 289 ACHYTEGENMVCVLDFKRETGLWHSVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRA 348
A G+ ++ F + +W +++G V + +PA +++I +
Sbjct: 690 AYGLGVGDTVLQKTPFSFDVSVWEFFWP-LMSGARLVVAAPGDHR-DPAKLVELINREGV 747
Query: 349 SVAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGANPWSL 390
L L +D S +SLR ++ A P
Sbjct: 748 DTLHFVPSMLQ-AFL--QDEDVASCTSLRRIVCSGEALPADA 786
Score = 37.6 bits (87), Expect = 0.074
Identities = 41/194 (21%), Positives = 78/194 (40%), Gaps = 21/194 (10%)
Query: 1176 AGVAGAPVPPGVSSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGI 1235
V P P + + L ++L++RA R+ L+ER + V + I
Sbjct: 519 EQVERTPEAPAL-----AFGEETLDYAELNRRANRLAHALIERG-VGPDVLVGVAMERSI 572
Query: 1236 DLICAFYGCLYVGAVPVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKE 1295
+++ A L G V + P +P + ++ S L+LS ++ + L
Sbjct: 573 EMVVALLAILKAGGAYVPLDPEYPAERLAYM------LEDSGVQLLLSQSHLGRKLPLAA 626
Query: 1296 ASNVVDIKSWPTILD--TDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAA 1353
V+D+ L+ +++ P +L E LAY+ ++ +TG G H A
Sbjct: 627 GVQVLDLDRPAAWLEGYSEENPGTEL-------NPENLAYVIYTSGSTGKPKGAGNRHRA 679
Query: 1354 VTSLCRSMKLACEL 1367
+++ M+ A L
Sbjct: 680 LSNRLCWMQQAYGL 693
Score = 34.5 bits (79), Expect = 0.76
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 11/95 (11%)
Query: 774 HQFISEILKWRAASTSEHVIFTLLNSKGSAAQLLTCSQLHKRAERVGALLLERAKINTGD 833
HQ ++E RA T + V + LT ++L++RA R+ L+ R +
Sbjct: 4554 HQLVAE----RARMTPDAVAVVF------DEEKLTYAELNRRANRLAHALIARG-VGPEV 4602
Query: 834 HVALIFPPGIDLICAFYGCLYVGAVPVTIRPPHPQ 868
V + +++ L G V + P +P+
Sbjct: 4603 LVGIAMERSAEMMVGLLAVLKAGGAYVPLDPEYPR 4637
Score = 34.2 bits (78), Expect = 0.93
Identities = 32/167 (19%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 1195 AAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTI 1254
Q L+ ++L++RA R+ L+ER + V + ++++ L G V +
Sbjct: 3079 GEQRLSYAELNRRANRLAHRLIERG-VGPDVLVGVAVERSLEMVVGLLAILKAGGAYVPL 3137
Query: 1255 RPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDM 1314
P +P+ M+ D +L +Q+ ++L + + V+D+ +
Sbjct: 3138 DPEYPEERLAY-----MLED--SGAQLLLSQSHLRLPLA-QGVQVLDLDRGDENYAEANP 3189
Query: 1315 PKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSM 1361
+ E LAY+ ++ +TG G+ + H+A+++ M
Sbjct: 3190 AIRT--------MPENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWM 3228
>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family. Characterized
members of this protein family include benzoate-CoA
ligase, 4-hydroxybenzoate-CoA ligase,
2-aminobenzoate-CoA ligase, etc. Members are related to
fatty acid and acetate CoA ligases.
Length = 508
Score = 52.2 bits (125), Expect = 2e-06
Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 23/167 (13%)
Query: 112 TLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAG 171
+L+YG+L ++ ++ L + R +R+ L+ D ++F AF G I AG
Sbjct: 30 SLSYGELEAQVRRLGAALRRLGVKRE--------ERVLLLM--LDGVDFPIAFLGAIRAG 79
Query: 172 IVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGE------VVAFK 225
IVPV + LT + ++L +V S L + K A G+ V
Sbjct: 80 IVPVALNTLLT-----ADDYAYMLEDSRARVVFVSGELLP-VIKAALGKSPHLEHRVVVG 133
Query: 226 GWPKLTWFVTEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGV 272
+ E LA + + P DD PA+ Y++ G GV
Sbjct: 134 RPEAGEVQLAELLATESEQFKPAATQADD-PAFWLYSSGSTGMPKGV 179
Score = 48.7 bits (116), Expect = 2e-05
Identities = 110/545 (20%), Positives = 193/545 (35%), Gaps = 143/545 (26%)
Query: 1169 FLRRTSPAGVAGAPVPPGVSSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVA 1228
L R G G + +D S+ L+ +L + R+GA L R + + V
Sbjct: 9 LLDRNVVEGRGGK-----TAFIDDISS---LSYGELEAQVRRLGAAL-RRLGVKREERVL 59
Query: 1229 LIFPPGIDLICAFYGCLYVGAVPVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVI 1288
L+ G+D AF G + G VPV + N T +++ S++ +V + ++
Sbjct: 60 LLMLDGVDFPIAFLGAIRAGIVPVAL------NTLLTADDYAYMLEDSRARVVFVSGELL 113
Query: 1289 KLLKSKEASNVVDIKSWPTILDTDDMPKKKLAALYR--------APT-AEMLAYLDFSVS 1339
++ K A ++ + + +LA L A T A+ A+ +S
Sbjct: 114 PVI--KAALGKSPHLEHRVVVGRPEAGEVQLAELLATESEQFKPAATQADDPAFWLYSSG 171
Query: 1340 TTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYC----------GLGFALWV 1389
+TGM G+ +H+ + ELY + + D GLG AL
Sbjct: 172 STGMPKGVVHTHS-------NPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTF 224
Query: 1390 LSSVYSGHHSILIP----PSEV-----EVNPALWLSAVSQYRVRDTFCSYGVMELCTKGL 1440
SV G ++L+ P V P ++ YGV L L
Sbjct: 225 PMSV--GATTVLMGERPTPDAVFDRLRRHQPTIF---------------YGVPTLYAAML 267
Query: 1441 SGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALGLSPRAVSTSFGCRVNI 1500
+ P L A + + R R+ TSA L + +G +A FG V+I
Sbjct: 268 AD--PNLPAED-------------QVRLRL-CTSAGEALPAEVGQRWQA---RFG--VDI 306
Query: 1501 AICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLPGVKVIIANPETK 1560
+ G S E +++ V G+ SGK +PG ++ + +
Sbjct: 307 ---VDGIGSTEMLHIFLSNLPGD------VRYGT--------SGKPVPGYRLRLVG-DGG 348
Query: 1561 GQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYART--GYLGFL 1618
GE+ + P +A+ Y + + ++ F +G+ Y R G +
Sbjct: 349 QDVAAGEPGELLISGPSSATMY---WNNRAKTRDTFQGEWT--RSGDKYVRNDDGSYTYA 403
Query: 1619 RRTSPAGVAGAPVPPGVSKLHDAVFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAEC 1678
RT D+ + + G+ P +IE++++ H + E
Sbjct: 404 GRT---------------------------DDMLKVSGIYVSPFEIESALI-QHPAVLEA 435
Query: 1679 AVFTW 1683
AV
Sbjct: 436 AVVGV 440
Score = 36.0 bits (83), Expect = 0.19
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 807 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTI 862
L+ +L + R+GA L R + + V L+ G+D AF G + G VPV +
Sbjct: 31 LSYGELEAQVRRLGAAL-RRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVAL 85
>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 448
Score = 51.1 bits (123), Expect = 4e-06
Identities = 74/339 (21%), Positives = 128/339 (37%), Gaps = 66/339 (19%)
Query: 111 ITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFA 170
+L+Y +L +A L + R IAL N+ I+++ A C+ A
Sbjct: 1 DSLSYQQLWQEVDLLAEQLRALGVKR-----------IALALDNS--IDWVIADLACLQA 47
Query: 171 GIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKL 230
GIV +PI + QQ LL + ++ D +A A G
Sbjct: 48 GIVCIPIPHFFSA-----QQTQHLLNDAGADLLISDDP----DAASALHTPFATLGEDLY 98
Query: 231 TWFVTEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQAC 290
L + L T A I YT+ G GV ++ AA+ + ++L +A
Sbjct: 99 IA-----LRPSANP----VELPAGT-AKITYTSGSTGQPKGVCLSAAALETVAQSLAEAI 148
Query: 291 HYTEGENMVCVLDF----KRETGLWHSVL---TSVLNGMHAVYIPYALM---KVNPASWM 340
E E +C+L + G++ +L T +L + + L ++PA ++
Sbjct: 149 AILEPERHLCLLPLATLLENIAGVYAPLLMGATVILVPLAEL----GLSGSSGLDPAQFV 204
Query: 341 QMITKYRASVAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGA-NPWSLSSCDQF-LS 398
+++++ ++ + L L+A + + SLR + VG +P L L
Sbjct: 205 AALSRWQPHSLILVPQLLM-ALVAAVEQGPLPPESLRFVAVGGARVSPSLLQRARALGLP 263
Query: 399 VFQSKGLRPDAICPCASSSECLTV------SVRRPGRAG 431
V++ GL SEC +V RPG G
Sbjct: 264 VYEGYGL-----------SECASVVSLNTPGADRPGSVG 291
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase.
The members of this family are putative long-chain fatty
acyl-CoA synthetases, which catalyze the ATP-dependent
activation of fatty acids in a two-step reaction. The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. Fatty acyl-CoA synthetases
are responsible for fatty acid degradation as well as
physiological regulation of cellular functions via the
production of fatty acyl-CoA esters.
Length = 430
Score = 50.8 bits (122), Expect = 5e-06
Identities = 57/285 (20%), Positives = 93/285 (32%), Gaps = 82/285 (28%)
Query: 112 TLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAG 171
+TY +LL ++A L E ++ GDR+AL N+ F+ A+Y + AG
Sbjct: 1 VITYAELLELVDRLAGLL--------QEKGVRKGDRVALYMQNS--PQFVIAYYAILRAG 50
Query: 172 IVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKLT 231
V VP+ P+ R ++ +L +V +
Sbjct: 51 AVVVPVN-PMNREA----ELEHILNDSGARVLIVGSEL---------------------- 83
Query: 232 WFVTEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACH 291
D A I YT+ G G T +L+ A
Sbjct: 84 ----------------------DDVAVIPYTSGTTGLPKGCMHTHRTVLATAAASAAWSG 121
Query: 292 YTEGENMVCVLDFKRETGLWHSVLTSVLNGMHAVYIPYALM-KVNPASWMQMITKYRASV 350
T ++ L G+ S+ + G L+ + + + + I +YR +
Sbjct: 122 LTPDSVLLAFLPLFHVAGMQGSMNAPIYTG-----ATLVLLTRWDREAAARAIERYRVT- 175
Query: 351 AVVKSRDLHWG--------LLATKDHKDISLSSLRLLLVGDGANP 387
HW LLA D LSSL+++ G A P
Sbjct: 176 --------HWTNIVTMVVDLLAHPRFADYDLSSLKVVGGGGAALP 212
Score = 45.8 bits (109), Expect = 1e-04
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 807 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 864
+T ++L + +R+ A LL+ + GD VAL + A+Y L GAV V + P
Sbjct: 2 ITYAELLELVDRL-AGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNP 58
Score = 45.8 bits (109), Expect = 1e-04
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 1256
+T ++L + +R+ A LL+ + GD VAL + A+Y L GAV V + P
Sbjct: 2 ITYAELLELVDRL-AGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNP 58
Score = 35.8 bits (83), Expect = 0.23
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 910 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLCCPSNHPTPSPSE 969
+T ++L + +R+ A LL+ + GD VAL + A+Y L + +P
Sbjct: 2 ITYAELLELVDRL-AGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMN 60
Query: 970 SSNHATHRQNDSG 982
H NDSG
Sbjct: 61 REAELEHILNDSG 73
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.
Length = 521
Score = 50.6 bits (122), Expect = 6e-06
Identities = 60/305 (19%), Positives = 105/305 (34%), Gaps = 50/305 (16%)
Query: 114 TYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAGIV 173
TY +L R ++A L +K GDR+A+ N+ +L A++ G V
Sbjct: 33 TYAELDERVNRLANALR--------ALGVKKGDRVAVFDWNSH--EYLEAYFAVPKIGAV 82
Query: 174 PVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSD------ACLKGLPKTAAGEVVAFKGW 227
PI + L ++I ++L + +V L A + T V+
Sbjct: 83 LHPINIRLK-----PEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRT-VIVEGDG 136
Query: 228 PKLTWFVTEH-----LAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSH 282
P LA P + ++ A + YT+ G GV ++ + H
Sbjct: 137 PAAPLAPEVGEYEELLAAASDT-FDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLH 195
Query: 283 CRALTQACHYTEGE-NMVCVLDFKRETGLWHSVLTSVLNGMHAVYIPYALMKVNPASWMQ 341
A+ + + +V V F W +++ G V + +P + +
Sbjct: 196 SLAVCAWLKLSRDDVYLVIVPMF--HVHAWGLPYLALMAGAKQVIPR----RFDPENLLD 249
Query: 342 MITKYRASVAVVKSRDLH-----W-GLLATKDHKDISLSSLRLLLVGDGANPWSLSSCDQ 395
+I R + W LL + SSLRL++ G GA + +
Sbjct: 250 LIETERVTFF-------FAVPTIWQMLLKAPRAYFVDFSSLRLVIYG-GA-ALPPALLRE 300
Query: 396 FLSVF 400
F F
Sbjct: 301 FKEKF 305
Score = 33.2 bits (77), Expect = 1.4
Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 44/144 (30%)
Query: 1544 GKLLPGVKVIIANPETKGQ-CGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVT 1602
G+ LPGV+ I + + +GEI V+ P GY++ +A +
Sbjct: 342 GRPLPGVEARIVDDDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEA--------TAETID 393
Query: 1603 G---NTGELYARTGYL---GFLRRTSPAGVAGAPVPPGVSKLHDAVFVVGALDETIMLRG 1656
G +TG++ GY+ G+L + D + + I+ G
Sbjct: 394 GGWLHTGDV----GYIDEDGYLY------------------ITDRI------KDVIISGG 425
Query: 1657 MRYHPIDIENSVMRAHKKIAECAV 1680
+P ++E+++ H +AE AV
Sbjct: 426 ENIYPRELEDALY-GHPAVAEVAV 448
Score = 31.7 bits (73), Expect = 4.5
Identities = 26/131 (19%), Positives = 50/131 (38%), Gaps = 14/131 (10%)
Query: 1203 QLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPHPQNL 1262
+L +R R+ L + GD VA+ + + A++ +GAV I N+
Sbjct: 36 ELDERVNRLANALRA-LGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPI------NI 88
Query: 1263 QTTLPTVRMIVDVSKSVLVLSNQNVIKLLKS-KEASNVVDIKSWPTILDTDDMPKKKLAA 1321
+ + I++ ++ +VL + + LL + V ++ D P
Sbjct: 89 RLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTV--RTVIVEGDGPAAPLAPEVG 146
Query: 1322 LYRAPTAEMLA 1332
Y E+LA
Sbjct: 147 EY----EELLA 153
>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 455
Score = 48.9 bits (117), Expect = 2e-05
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 805 QLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 864
LT +L +R++R+ L + I GD V L+ PPG DL + VGAVPV I P
Sbjct: 1 DSLTFRELDERSDRIARGLRA-SGIRKGDRVVLMVPPGADLTALTFALFKVGAVPVLIDP 59
Score = 48.9 bits (117), Expect = 2e-05
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 1197 QLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 1256
LT +L +R++R+ L + I GD V L+ PPG DL + VGAVPV I P
Sbjct: 1 DSLTFRELDERSDRIARGLRA-SGIRKGDRVVLMVPPGADLTALTFALFKVGAVPVLIDP 59
Score = 34.7 bits (80), Expect = 0.44
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 908 QLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCL 956
LT +L +R++R+ L + I GD V L+ PPG DL +
Sbjct: 1 DSLTFRELDERSDRIARGLRA-SGIRKGDRVVLMVPPGADLTALTFALF 48
>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of
siderophore-synthesizing nonribosomal peptide synthetases
(NRPS). The adenylation (A) domain of NRPS recognizes a
specific amino acid or hydroxy acid and activates it as
an (amino) acyl adenylate by hydrolysis of ATP. The
activated acyl moiety then forms a thioester to the
enzyme-bound cofactor phosphopantetheine of a peptidyl
carrier protein domain. This family of
siderophore-synthesizing NRPS includes the third
adenylation domain of SidN from the endophytic fungus
Neotyphodium lolii, ferrichrome siderophore synthetase,
HC-toxin synthetase, and enniatin synthase. NRPSs are
large multifunctional enzymes which synthesize many
therapeutically useful peptides. These natural products
include antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible for
the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 447
Score = 48.8 bits (117), Expect = 2e-05
Identities = 34/172 (19%), Positives = 59/172 (34%), Gaps = 49/172 (28%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 1258
LT ++L +RA ++ L+ + GD VAL L A L GA V I P
Sbjct: 18 LTYAELDRRANKLAHHLISLG-VRPGDIVALCLERSPWLYVAILAVLKAGAAYVPIDPSA 76
Query: 1259 PQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDMPKKK 1318
P ++ I++ S + +VL+ DD
Sbjct: 77 PV------ERLQFIIEDSGATVVLT-------------------------SSPDD----- 100
Query: 1319 LAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPS 1370
AY+ ++ +TG G+ ++H + + R+ + P
Sbjct: 101 ------------PAYVIYTSGSTGKPKGVVITHRNICNFLRAEGAILGIRPG 140
Score = 42.6 bits (101), Expect = 0.002
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 807 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 866
LT ++L +RA ++ L+ + GD VAL L A L GA V I P
Sbjct: 18 LTYAELDRRANKLAHHLISLG-VRPGDIVALCLERSPWLYVAILAVLKAGAAYVPIDPSA 76
Query: 867 PQ 868
P
Sbjct: 77 PV 78
Score = 34.9 bits (81), Expect = 0.43
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 910 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFY-----GCLCCP 959
LT ++L +RA ++ L+ + GD VAL L A G P
Sbjct: 18 LTYAELDRRANKLAHHLISLG-VRPGDIVALCLERSPWLYVAILAVLKAGAAYVP 71
Score = 34.5 bits (80), Expect = 0.49
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 1544 GKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQF--SARLV 1601
G+ LP + +P+ + +GE+ + P A GY A++F +
Sbjct: 261 GRPLPNYTCWVLDPDLEPLVPIGAVGELCIGGPGVARGY---LNRPELTAEKFIPDPFWL 317
Query: 1602 TGNTGELYARTGYLGFL 1618
G +Y RTG L
Sbjct: 318 NNPGGRIY-RTGDLVRY 333
Score = 34.5 bits (80), Expect = 0.61
Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 6/106 (5%)
Query: 467 GQVMPGCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADG 526
G+ +P V+ D L VGE+C+ G Y P L+ F P +
Sbjct: 261 GRPLPNYTCWVLDPDLEP-LVPIGAVGELCIGGPGVARGYLNRPELTAEKFIPDPFWLNN 319
Query: 527 TALSQDTYTRSGLLGFLGP-GGLVFVCGSRDGLMTVTGRKHNADDI 571
Y R+G L G L F+ G +D + + G++ +I
Sbjct: 320 P--GGRIY-RTGDLVRYLEDGSLEFL-GRKDDQVKIRGQRIELGEI 361
Score = 33.0 bits (76), Expect = 1.5
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 15/98 (15%)
Query: 111 ITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFA 170
+LTY +L R+ K+A+ L++ + GD +AL A + A
Sbjct: 16 GSLTYAELDRRANKLAHHLISLGVRP--------GDIVALCLER--SPWLYVAILAVLKA 65
Query: 171 GIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDA 208
G VPI+ A +++ F++ V LTS
Sbjct: 66 GAAYVPIDP-----SAPVERLQFIIEDSGATVVLTSSP 98
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional.
Length = 3956
Score = 49.0 bits (117), Expect = 3e-05
Identities = 50/243 (20%), Positives = 86/243 (35%), Gaps = 35/243 (14%)
Query: 1145 AQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSSVDTRSAAQL------ 1198
A+ F RL+ AR G L L V A + R QL
Sbjct: 3048 AESF-DRLLQAMLNNPAARLGELPTLAAHERRQVLHAWNATAAAYPSERLVHQLIEAQVA 3106
Query: 1199 --------------LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGC 1244
L+ ++L++RA R+ L+ + V + +++I A
Sbjct: 3107 RTPEAPALVFGDQQLSYAELNRRANRLAHRLIAIG-VGPDVLVGVAVERSVEMIVALLAV 3165
Query: 1245 LYVGAVPVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKS 1304
L G V + P +P+ MI D S L+L+ ++++ L + +
Sbjct: 3166 LKAGGAYVPLDPEYPRERLAY-----MIED-SGVKLLLTQAHLLEQLPAPAGDTALT--- 3216
Query: 1305 WPTILDTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLA 1364
LD D+ E LAY+ ++ +TG G+ + H A+ + + A
Sbjct: 3217 ----LDRLDLNGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEA 3272
Query: 1365 CEL 1367
EL
Sbjct: 3273 YEL 3275
Score = 42.1 bits (99), Expect = 0.003
Identities = 54/278 (19%), Positives = 103/278 (37%), Gaps = 37/278 (13%)
Query: 113 LTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAG- 171
L+Y +L R+ ++A+ L+ I + + +A+ + + A + AG
Sbjct: 3121 LSYAELNRRANRLAHRLIA--IGVGPDVLVG----VAV----ERSVEMIVALLAVLKAGG 3170
Query: 172 -IVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKL 230
VP+ E P R + +++ +++ LT L+ LP A +
Sbjct: 3171 AYVPLDPEYPRER-------LAYMIEDSGVKLLLTQAHLLEQLPAPAGDTAL-------- 3215
Query: 231 TWFVTEHLAKTPK-DWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQA 289
+ L + P R+ + AY+ YT+ G GV V A+ +H + +A
Sbjct: 3216 ---TLDRLDLNGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEA 3272
Query: 290 CHYTEGENMVCVLDFKRETGLWHSVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRAS 349
+ ++ + F + L +++ G V L +P Q I +R S
Sbjct: 3273 YELDANDRVLLFMSFSFDGAQER-FLWTLICGGCLVVRDNDLW--DPEELWQAIHAHRIS 3329
Query: 350 VAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGANP 387
+A L +D +SL + + G A P
Sbjct: 3330 IACFPPAYLQQFA---EDAGGADCASLDIYVFGGEAVP 3364
Score = 39.8 bits (93), Expect = 0.018
Identities = 36/179 (20%), Positives = 69/179 (38%), Gaps = 18/179 (10%)
Query: 1195 AAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTI 1254
Q LT +L++RA R+ L+ + V + ++++ L G V +
Sbjct: 1596 GEQELTYGELNRRANRLAHRLIALG-VGPEVLVGIAVERSLEMVVGLLAILKAGGAYVPL 1654
Query: 1255 RPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEA--SNVVD-IKSWPTILDT 1311
P +P+ MI D S L+L+ ++ L + S V+D W L+
Sbjct: 1655 DPEYPRE-----RLAYMIED-SGIELLLTQSHLQARLPLPDGLRSLVLDQEDDW---LEG 1705
Query: 1312 DDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPS 1370
+ + LAY+ ++ +TG G H A+ + + + A +L +
Sbjct: 1706 YSD-----SNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAA 1759
Score = 37.1 bits (86), Expect = 0.13
Identities = 33/168 (19%), Positives = 69/168 (41%), Gaps = 18/168 (10%)
Query: 1197 QLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 1256
Q+L+ ++L+++A R+ +L+ A + V + I+++ L G V + P
Sbjct: 536 QVLSYAELNRQANRLAHVLIA-AGVGPDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDP 594
Query: 1257 PHPQN-LQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDMP 1315
+PQ+ L M+ D S L+L+ +++ L + LD
Sbjct: 595 EYPQDRLA------YMLDD-SGVRLLLTQSHLLAQLPVPAGLRSLC-------LDEPADL 640
Query: 1316 KKKLAALYRAPT--AEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSM 1361
+ + LAY+ ++ +TG G+ +SH A+ + +
Sbjct: 641 LCGYSGHNPEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVI 688
Score = 36.7 bits (85), Expect = 0.17
Identities = 58/302 (19%), Positives = 103/302 (34%), Gaps = 44/302 (14%)
Query: 247 PQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFKR 306
P+ L D AY+ YT+ G GV ++ A+ ++ + + ++M+ V F
Sbjct: 649 PEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSMLMVSTFAF 708
Query: 307 ETGLWHSVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATK 366
+ G+ + ++ +G +P + + ++ ++ V V+K H L +
Sbjct: 709 DLGVT-ELFGALASGATLHLLPPDCAR-DAEAFAALMADQG--VTVLKIVPSHLQAL-LQ 763
Query: 367 DHKDISLSSLRLLLVGDGANPWSLSSCDQFLSVFQSKGLRPDAICPCASSSECLTVSVRR 426
+ R L+ G A L + V L P ++
Sbjct: 764 ASRVALPRPQRALVCGGEALQVDLLA-----RVRA---LGP----------GARLINHYG 805
Query: 427 PGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQVMPGCIMTVVKMDSPSYL 486
P V + LS +G V + Q L +L L +D
Sbjct: 806 PTETTVGVS-TYELSDEERDFGNVPIGQ--PLANLGLY--------------ILDHYLNP 848
Query: 487 CKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQD----TYTRSGLLGF 542
VGE+ + G Y P L+ F P ADG L + Y G++ +
Sbjct: 849 VPVGVVGELYIGGAGLARGYHRRPALTAERFVPDPFGADGGRLYRTGDLARYRADGVIEY 908
Query: 543 LG 544
LG
Sbjct: 909 LG 910
Score = 35.5 bits (82), Expect = 0.36
Identities = 56/308 (18%), Positives = 109/308 (35%), Gaps = 42/308 (13%)
Query: 54 DPNAPKPEGGVMTPAPGESLV-----VPSGLP--RNLEAAIQRYGSATYKAPVATVLDPN 106
DP E ++ A ++ +G P R + I+ +AT +A VA V
Sbjct: 1540 DPERRLGELDLLDEAERRQILEGWNATHTGYPLARLVHQLIEDQAAATPEA-VALVFG-- 1596
Query: 107 GKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYG 166
LTYG+L R+ ++A+ L+ + + + + + +
Sbjct: 1597 ---EQELTYGELNRRANRLAHRLI--------ALGVGPEVLVGIAVERS--LEMVVGLLA 1643
Query: 167 CIFAG--IVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAF 224
+ AG VP+ E P R + +++ I++ LT LP +
Sbjct: 1644 ILKAGGAYVPLDPEYPRER-------LAYMIEDSGIELLLTQSHLQARLPLPDGLRSLVL 1696
Query: 225 KGWPKLTWFVTEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCR 284
+ W D P L AY+ YT+ G G A+++
Sbjct: 1697 D--QEDDWLEGY------SDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLC 1748
Query: 285 ALTQACHYTEGENMVCVLDFKRETGLWHSVLTSVLNGMHAVYIPYALMKVNPASWMQMIT 344
A +A + + ++ F + +W + ++NG V P + +P +Q+I
Sbjct: 1749 ATQEAYQLSAADVVLQFTSFAFDVSVW-ELFWPLINGARLVIAPPGAHR-DPEQLIQLIE 1806
Query: 345 KYRASVAV 352
+ + +
Sbjct: 1807 RQQVTTLH 1814
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as
O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or
MenE). O-succinylbenzoic acid-CoA synthase catalyzes the
coenzyme A (CoA)- and ATP-dependent conversion of
o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The
reaction is the fourth step of the biosynthesis pathway
of menaquinone (vitamin K2). In certain bacteria,
menaquinone is used during fumarate reduction in
anaerobic respiration. In cyanobacteria, the product of
the menaquinone pathway is phylloquinone
(2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used
exclusively as an electron transfer cofactor in
Photosystem 1. In green sulfur bacteria and
heliobacteria, menaquinones are used as loosely bound
secondary electron acceptors in the photosynthetic
reaction center.
Length = 407
Score = 46.8 bits (112), Expect = 8e-05
Identities = 40/165 (24%), Positives = 57/165 (34%), Gaps = 55/165 (33%)
Query: 1543 SGKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVT 1602
GK LPG ++ I NP+ GEI V+ P GY
Sbjct: 244 VGKPLPGRELRIVNPQD---------GEILVRGPSLFLGY---LPQG----GLTPPLDED 287
Query: 1603 G--NTGELYARTGYL---GFLRRTSPAGVAGAPVPPGVSKLHDAVFVVGALDETIMLRGM 1657
G +TG+L GYL G+L +V+G D+ I+ G
Sbjct: 288 GWFHTGDL----GYLDAEGYL------------------------YVLGRRDDLIISGGE 319
Query: 1658 RYHPIDIENSVMRAHKKIAECAVF-----TWTNLLVVVVELDGNE 1697
+P +IE V+ H + E AV W V V + +
Sbjct: 320 NIYPEEIEA-VLLQHPAVEEAAVVGVPDDEWGQRPVAFVVPNDDP 363
Score = 41.8 bits (99), Expect = 0.003
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 807 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 866
LT +L +R ++ A L + GD VAL+ I+ + F L +GAV + + P
Sbjct: 2 LTFQELDQRVSQL-AEQLAALGVRRGDRVALLAKNSIEFLLLFLALLRLGAVVLPLNPRL 60
Query: 867 PQN-LQTTLPTHQ 878
PQ LQ L Q
Sbjct: 61 PQEELQQQLADLQ 73
Score = 41.4 bits (98), Expect = 0.004
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 1256
LT +L +R ++ A L + GD VAL+ I+ + F L +GAV + + P
Sbjct: 2 LTFQELDQRVSQL-AEQLAALGVRRGDRVALLAKNSIEFLLLFLALLRLGAVVLPLNP 58
Score = 39.1 bits (92), Expect = 0.022
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 112 TLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAG 171
+LT+ +L R ++A L + ++ GDR+AL+ N I FL F + G
Sbjct: 1 SLTFQELDQRVSQLAEQL--------AALGVRRGDRVALLAKN--SIEFLLLFLALLRLG 50
Query: 172 IVPVPIEVPLTRRDAGSQ 189
V +P+ L + + Q
Sbjct: 51 AVVLPLNPRLPQEELQQQ 68
Score = 35.2 bits (82), Expect = 0.34
Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 21/94 (22%)
Query: 910 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFY-----GCLCCPSNHPT 964
LT +L +R ++ A L + GD VAL+ I+ + F G + P N
Sbjct: 2 LTFQELDQRVSQL-AEQLAALGVRRGDRVALLAKNSIEFLLLFLALLRLGAVVLPLN--- 57
Query: 965 PSPSESSNHATHRQNDSGRQQICSSLIQPKCDQT 998
R QQ + L QP D+
Sbjct: 58 -----------PRLPQEELQQQLADL-QPDLDRP 79
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called
cyclohex-1-ene-1-carboxylate:CoA ligase).
Cyclohexanecarboxylate-CoA ligase activates the
aliphatic ring compound, cyclohexanecarboxylate, for
degradation. It catalyzes the synthesis of
cyclohexanecarboxylate-CoA thioesters in a two-step
reaction involving the formation of
cyclohexanecarboxylate-AMP anhydride, followed by the
nucleophilic substitution of AMP by CoA.
Length = 437
Score = 46.4 bits (111), Expect = 1e-04
Identities = 96/462 (20%), Positives = 149/462 (32%), Gaps = 121/462 (26%)
Query: 112 TLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAG 171
LTYG+L + ++A L + GD +A PN F+ + C G
Sbjct: 1 RLTYGELDDAADRLAAALAELGVRP--------GDVVAFQLPNW--WEFVVVYLACARIG 50
Query: 172 IVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKLT 231
V PI VP+ R +++GF+L +V P G
Sbjct: 51 AVINPI-VPIYR----ERELGFILRQARARVLFV--------PDEFRG------------ 85
Query: 232 WFVTEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACH 291
D+A P DD A + YT+ G GV T +L+ R+ +
Sbjct: 86 -----------FDYAAMP---DDV-ALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLG 130
Query: 292 YTEGENMVCVLDFKRETGLWHSVLTSVLNGMHAVYIPYALMKV-NPASWMQMITKYRASV 350
T + ++ TG + + +L G V L +PA +++I ++ +
Sbjct: 131 LTPDDVVLMPSPLAHITGFLYGLELPLLLGATVV-----LQDRWDPARALELIREHGVTF 185
Query: 351 AVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGANPWSLSSCDQFLSVFQSKGLRPDAI 410
+ + L LLA D L SLR+ L G P L+ + +
Sbjct: 186 TMGATPFLA-DLLAAADAAGPDLPSLRVFLCGGAPVPRELA--RRAAEAL------GAKV 236
Query: 411 CPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQVM 470
+E V+V P D + + T G+ +
Sbjct: 237 VRAYGMTEVPLVTVGTPDDP----------------------DDKRAAT------DGRPV 268
Query: 471 PGCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALS 530
PG + +V D E GE+ V Y P
Sbjct: 269 PGVEVRIV--DDDGNDVPPGEEGELQVRGPQLFLGYLD------------PPDNTEAFTD 314
Query: 531 QDTYTRSGLLGFLGPGGLVFVCGSRDGLMTVTGRKHNADDII 572
D + R+G LG L DG + +TGRK DII
Sbjct: 315 -DGWFRTGDLGRLDA----------DGYLRITGRK---KDII 342
Score = 40.3 bits (95), Expect = 0.009
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 807 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 864
LT +L A+R+ A L E + GD VA P + + + C +GAV I P
Sbjct: 2 LTYGELDDAADRLAAALAEL-GVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVP 58
Score = 40.3 bits (95), Expect = 0.009
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 1256
LT +L A+R+ A L E + GD VA P + + + C +GAV I P
Sbjct: 2 LTYGELDDAADRLAAALAEL-GVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVP 58
Score = 32.2 bits (74), Expect = 2.9
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 910 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCL-----CCPSNH 962
LT +L A+R+ A L E + GD VA P + + + C P
Sbjct: 2 LTYGELDDAADRLAAALAEL-GVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVP 58
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
bond to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi via
a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal toxins,
and enzyme inhibitors. NRPS has a distinct modular
structure in which each module is responsible for the
recognition, activation, and in some cases, modification
of a single amino acid residue of the final peptide
product. The modules can be subdivided into domains that
catalyze specific biochemical reactions.
Length = 445
Score = 45.5 bits (109), Expect = 2e-04
Identities = 44/230 (19%), Positives = 87/230 (37%), Gaps = 58/230 (25%)
Query: 1197 QLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 1256
Q LT +L++RA R+ L R + GD VA+ +++ A L GA V + P
Sbjct: 11 QSLTYRELNERANRLAHYLRARG-VGPGDLVAICLERSPEMVVAILAVLKAGAAYVPLDP 69
Query: 1257 PHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDMPK 1316
+P + +++ S + L+L+ D DD
Sbjct: 70 AYPAE------RLAYMLEDSGAKLLLT--------------------------DPDD--- 94
Query: 1317 KKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALC 1376
LAY+ ++ +TG G+ + H + +L ++ L +
Sbjct: 95 --------------LAYVIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYGLTAGDRVLQ- 139
Query: 1377 LDPYCGLGF--ALW-VLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 1423
+ F ++W + + SG ++++ P EV +P + ++R+
Sbjct: 140 ---FASFSFDASVWEIFPPLLSG-ATLVLAPPEVLRDPEALAELLREHRI 185
Score = 44.4 bits (106), Expect = 5e-04
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 805 QLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 864
Q LT +L++RA R+ L R + GD VA+ +++ A L GA V + P
Sbjct: 11 QSLTYRELNERANRLAHYLRARG-VGPGDLVAICLERSPEMVVAILAVLKAGAAYVPLDP 69
Query: 865 PHPQ 868
+P
Sbjct: 70 AYPA 73
Score = 36.7 bits (86), Expect = 0.12
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 908 QLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCL 956
Q LT +L++RA R+ L R + GD VA+ +++ A L
Sbjct: 11 QSLTYRELNERANRLAHYLRARG-VGPGDLVAICLERSPEMVVAILAVL 58
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with ATP
to form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is a required
step before free fatty acids can participate in most
catabolic and anabolic reactions.
Length = 347
Score = 45.2 bits (108), Expect = 2e-04
Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 31/139 (22%)
Query: 1543 SGKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVT 1602
G+ LPGV+V I +P+ G+ +GEI V+ GY Y D A+ A
Sbjct: 175 VGRPLPGVEVKIVDPDG-GEVPPGEVGEICVRGYSVMKGY---YNDPEATAEAIDA---- 226
Query: 1603 GNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDAVFVVGALDETIMLRGMRYHPI 1662
G L TG LG++ G + +VG + + I+ G +P
Sbjct: 227 --DGWL--HTGDLGYMD---EDGY---------------LRIVGRIKDMIIRGGENIYPA 264
Query: 1663 DIENSVMRAHKKIAECAVF 1681
+IE + H +AE AV
Sbjct: 265 EIEE-ALLTHPAVAEAAVV 282
Score = 44.8 bits (107), Expect = 3e-04
Identities = 69/317 (21%), Positives = 106/317 (33%), Gaps = 87/317 (27%)
Query: 254 DTPAYIEYTTDRDGSVMGVT-VTRAAMLSHCRALTQACHY-------TEGENMVCVLDFK 305
D PA I+YT+ G T + AML+H R + + TEG+ + +
Sbjct: 2 DDPALIQYTS-------GTTGRPKGAMLTH-RNVLNNGYSIARRLGLTEGDRTLVPVPLF 53
Query: 306 RETGLWHSVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLH------ 359
GL VL S+ G V + K +P + +++I + R + LH
Sbjct: 54 HVFGLVLGVLASLTAGATLVLME----KFDPGAALRLIERERITA-------LHGVPTMF 102
Query: 360 WGLLATKDHKDISLSSLRLLLVGDGANPWSLSSCDQFLSVFQSKGLRPDA-ICPCASSSE 418
LL D LSSLR + G P L + F P A I +E
Sbjct: 103 IALLEHPDFDKFDLSSLRTGISGGAPVPPEL--VRRIREEF------PMAEITTGYGMTE 154
Query: 419 CLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQVMPGCIMTVV 478
V + E+ + G+ +PG + +V
Sbjct: 155 TSGVG----------------------TQTSGDDPYEDRPGT-----VGRPLPGVEVKIV 187
Query: 479 KMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTA--LSQDTYTR 536
D EVGEICV Y+ P + TA + D +
Sbjct: 188 DPDGGE--VPPGEVGEICVRGYSVMKGYYNDP--------------EATAEAIDADGWLH 231
Query: 537 SGLLGFLGPGGLVFVCG 553
+G LG++ G + + G
Sbjct: 232 TGDLGYMDEDGYLRIVG 248
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid
CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions. Members of this
family include DitJ from Pseudomonas and similar
proteins.
Length = 421
Score = 44.9 bits (107), Expect = 3e-04
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 804 AQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIR 863
+ T ++L +R R+ A LL + GD VAL+ + + A++ +GAV V I
Sbjct: 1 GRRYTYAELAERVNRLAAGLL-ALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPIN 59
Query: 864 P 864
Sbjct: 60 T 60
Score = 44.9 bits (107), Expect = 3e-04
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 1196 AQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIR 1255
+ T ++L +R R+ A LL + GD VAL+ + + A++ +GAV V I
Sbjct: 1 GRRYTYAELAERVNRLAAGLL-ALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPIN 59
Query: 1256 P 1256
Sbjct: 60 T 60
Score = 43.7 bits (104), Expect = 8e-04
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 15/99 (15%)
Query: 112 TLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAG 171
TY +L R ++A LL + + GDR+AL+ N FL A++ G
Sbjct: 3 RYTYAELAERVNRLAAGLLALGV--------RPGDRVALMLDNC--PEFLRAWFALNKLG 52
Query: 172 IVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACL 210
V VPI L +++ +L ++ + A +
Sbjct: 53 AVAVPINTALRG-----EELAHILDHSGARLIVVDTAAI 86
Score = 32.9 bits (76), Expect = 1.6
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 907 AQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGC 955
+ T ++L +R R+ A LL + GD VAL+ + + A++
Sbjct: 1 GRRYTYAELAERVNRLAAGLL-ALGVRPGDRVALMLDNCPEFLRAWFAL 48
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid
metabolism].
Length = 613
Score = 45.4 bits (108), Expect = 3e-04
Identities = 109/550 (19%), Positives = 175/550 (31%), Gaps = 136/550 (24%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 1258
+T +L++R + A L I GD VA+ + A L +GAV V I
Sbjct: 46 ITYRELYERVRAL-ASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYS-- 102
Query: 1259 PQNLQTTLPTVRMIVDVSKSVLVL-SNQ---NVIKLLKSKEASNVVDIKSWPT---ILDT 1311
+T + I++ S+S ++ NQ +++ + V I ++
Sbjct: 103 ----TSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEA 158
Query: 1312 DDMPKK---------------KLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSH----A 1352
+ + L P + LA + ++ TTG G+ ++H A
Sbjct: 159 KALVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLA 218
Query: 1353 AVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEV----- 1407
V + + R L P + + G ++L
Sbjct: 219 QVAGIDEVLPPIGP--GDRV--LSFLPLAHIFERAFEGGLALYGGVTVLFKEDPRTLLED 274
Query: 1408 --EVNPALWLSAVSQY-RVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVA 1464
EV P + + + +V G+ME K + K AL + A
Sbjct: 275 LKEVRPTVMIGVPRVWEKVYK-----GIME---KVAKAPAVRRKLFRWALKVAYKKISRA 326
Query: 1465 EERPRIHLTSA------FSKLFSALG------------LSPRAVS--TSFGCRVNIAICL 1504
F K+ ALG LSP + S G + L
Sbjct: 327 LLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSLGIPI-----L 381
Query: 1505 QGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLPGVKVIIANPETKGQCG 1564
+G E S V + DR G+ GK LPG++V IA
Sbjct: 382 EGYGLTETSAV---VSVNPPDRF---VLGT--------VGKPLPGIEVKIA--------D 419
Query: 1565 DSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPA 1624
D GEI V+ P+ GY Y + A+ F T + + RTG LG L
Sbjct: 420 D---GEILVRGPNVMKGY---YKNPEATAEAF--------TEDGWFRTGDLGEL---DED 462
Query: 1625 GVAGAPVPPGVSKLHDAVFVVGALDETIMLRGMRY-HPIDIENSVMRAHKKIAECAVFTW 1683
G + + G E I L + P IE+ + I + V
Sbjct: 463 GY---------------LVITGRKKELIKLSNGKNIAPEPIES-KLAKSPLIEQICVVGD 506
Query: 1684 TN--LLVVVV 1691
L+ ++V
Sbjct: 507 DKKFLVALIV 516
Score = 45.4 bits (108), Expect = 3e-04
Identities = 46/256 (17%), Positives = 84/256 (32%), Gaps = 51/256 (19%)
Query: 82 NLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESS 141
L + VA + +TY +L R +A LL+
Sbjct: 17 TLPKRLAERVK-DRPDGVALM-YKELGGWEAITYRELYERVRALASGLLS--------LG 66
Query: 142 LKSGDRIALVYPNNDPINFLCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQ 201
+ +GDR+A+ + N P + + G V VPI + +Q+ ++L + +
Sbjct: 67 IPAGDRVAI-FAANRPEWAIA-DLAILALGAVSVPI-----YSTSTPEQLAYILNESESK 119
Query: 202 VALTSD--------ACLKGLPKTAAGEVVAFKGWP---------------KLTWFVTEHL 238
V + L+ PK V+ ++ F+ +
Sbjct: 120 VIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGISLFLIDSA 179
Query: 239 AKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRAL-TQACHYTEGEN 297
+ P+P DD A I YT+ G+ GV +T +L+ + G+
Sbjct: 180 GLEGRIAPPKP---DD-LATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDR 235
Query: 298 MVCVLDFKRETGLWHS 313
++ L L H
Sbjct: 236 VLSFLP------LAHI 245
Score = 32.7 bits (75), Expect = 2.4
Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 3/88 (3%)
Query: 777 ISEILKWRAASTSEHVIFTLLNSKGSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVA 836
+ + L R + V G A +T +L++R + A L I GD VA
Sbjct: 18 LPKRLAERVKDRPDGVALMYKELGGWEA--ITYRELYERVRAL-ASGLLSLGIPAGDRVA 74
Query: 837 LIFPPGIDLICAFYGCLYVGAVPVTIRP 864
+ + A L +GAV V I
Sbjct: 75 IFAANRPEWAIADLAILALGAVSVPIYS 102
>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional.
Length = 552
Score = 44.5 bits (106), Expect = 5e-04
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 777 ISEILKWRAASTSEHVIFTLLNSKGSAAQL----LTCSQLHKRAERVGALLLERAKINTG 832
I+ L A + + + +G+ +L L+ ++L R++ + A L A I G
Sbjct: 8 IARHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAI-AHGLNAAGIGRG 66
Query: 833 DHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 864
L+ P ++ + GAVPV + P
Sbjct: 67 MRAVLMVTPSLEFFALTFALFKAGAVPVLVDP 98
Score = 44.1 bits (105), Expect = 7e-04
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 1197 QLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 1256
L+ ++L R++ + A L A I G L+ P ++ + GAVPV + P
Sbjct: 40 DELSFAELDARSDAI-AHGLNAAGIGRGMRAVLMVTPSLEFFALTFALFKAGAVPVLVDP 98
Score = 34.5 bits (80), Expect = 0.59
Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 880 ISEILKWRAASTSEHVIFTLLNSKGSAAQL----LTCSQLHKRAERVGALLLERAKINTG 935
I+ L A + + + +G+ +L L+ ++L R++ + A L A I G
Sbjct: 8 IARHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAI-AHGLNAAGIGRG 66
Query: 936 DHVALIFPPGIDLIC 950
L+ P ++
Sbjct: 67 MRAVLMVTPSLEFFA 81
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with ATP
to form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is a required
step before free fatty acids can participate in most
catabolic and anabolic reactions.
Length = 350
Score = 43.4 bits (103), Expect = 8e-04
Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 34/142 (23%)
Query: 1544 GKLLPGVKVIIANPETKGQ-CGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVT 1602
GK +P V++ + + G C +GE+ + + GY + D A++ +
Sbjct: 174 GKAIPNVELWVVDE--DGNRCAPGEVGELVHRGANVMKGY---WNDPEATAERLRPGPLP 228
Query: 1603 GNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDA---VFVVGALDETIMLRGMRY 1659
G LY TG L + D ++ VG D+ I RG R
Sbjct: 229 GEIV-LY--TGDLVRM---------------------DEEGYLYFVGRKDDMIKTRGYRV 264
Query: 1660 HPIDIENSVMRAHKKIAECAVF 1681
P +IE + AH +AE AV
Sbjct: 265 SPTEIEEVIC-AHPLVAEAAVI 285
Score = 38.0 bits (89), Expect = 0.042
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 1008 VFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVF 1047
++ VG D+ I RG R P +IE + AH +AE AV
Sbjct: 247 LYFVGRKDDMIKTRGYRVSPTEIEEVIC-AHPLVAEAAVI 285
Score = 31.8 bits (73), Expect = 3.4
Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 13/131 (9%)
Query: 253 DDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFKRETGLWH 312
DD A I YT+ G GV ++ + + R++ Q TE + ++ VL F + GL
Sbjct: 1 DDDLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDDRILAVLPFSFDYGL-- 58
Query: 313 SVLTSVLNGMHAVYIPYALMK--VNPASWMQMITKYRASV-AVVKSRDLHWGLLATKDH- 368
S L V L P ++ + K R + A V + W L D
Sbjct: 59 ----SQLLTAFRVGGTLVLESRFAFPRDVLKHLAKERITGFAGVPT---TWAQLLRLDPL 111
Query: 369 KDISLSSLRLL 379
SLR L
Sbjct: 112 AREDFPSLRYL 122
>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase;
Provisional.
Length = 560
Score = 43.3 bits (102), Expect = 0.001
Identities = 55/237 (23%), Positives = 96/237 (40%), Gaps = 48/237 (20%)
Query: 76 PSGLPRNLEAAIQRYGSATYKAPVATVLDPNGKLSI--TLTYGKLLSRSLKVAYTLLTKP 133
P+G+ ++ R + + VA D S T+TY + + A LL
Sbjct: 12 PAGVAAEIDLEQFRTVAEVFATSVAKFADRPAYHSFGKTITYREADQLVEQFAAYLL--- 68
Query: 134 INRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAGIVPVPIEVPLTRR-------DA 186
E LK GDR+AL+ PN + + A +G + AG+ V + T R D+
Sbjct: 69 ----GELQLKKGDRVALMMPNC--LQYPIATFGVLRAGLTVVNVNPLYTPRELKHQLIDS 122
Query: 187 GSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPK--LTWFVTEHLAKTPKD 244
G+ + + + +D +K + T G+++ G+PK L FV +++ K +
Sbjct: 123 GASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDML---GFPKAALVNFVVKYVKKLVPE 179
Query: 245 W-------------------APQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSH 282
+ P ++ D A+++YT G G V + AML+H
Sbjct: 180 YRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYT----GGTTG--VAKGAMLTH 230
Score = 32.9 bits (75), Expect = 1.9
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 1194 SAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVT 1253
S + +T + + E+ A LL ++ GD VAL+ P + A +G L G V
Sbjct: 46 SFGKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVN 105
Query: 1254 IRPPHPQNLQTTLPTVRMIVDVSKSVLVL 1282
+ P L T ++D SVLV+
Sbjct: 106 VNP-----LYTPRELKHQLIDSGASVLVV 129
>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated.
Length = 524
Score = 43.1 bits (102), Expect = 0.001
Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 462 TLQDCGQVMPGCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFK 518
L CG+ PG V +D EVGEICV YW P + F+
Sbjct: 337 RLTSCGRPTPGL--RVALLDEDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAFR 391
>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including salinosporamide A
polyketide synthase. The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi via
a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal toxins,
and enzyme inhibitors. NRPS has a distinct modular
structure in which each module is responsible for the
recognition, activation, and in some cases, modification
of a single amino acid residue of the final peptide
product. The modules can be subdivided into domains that
catalyze specific biochemical reactions. This family
includes the myxovirescin (TA) antibiotic biosynthetic
gene in Myxococcus xanthus; TA production plays a role in
predation. It also includes the salinosporamide A
polyketide synthase which is involved in the biosynthesis
of salinosporamide A, a marine microbial metabolite whose
chlorine atom is crucial for potent proteasome inhibition
and anticancer activity.
Length = 438
Score = 42.6 bits (101), Expect = 0.001
Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 50/169 (29%)
Query: 1193 RSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPV 1252
R + L+ ++L +R+ ++ A L + GD V ++ DL+ A L GA V
Sbjct: 7 RDDDRTLSYAELDERSNQLAARLRALG-VGPGDRVGVLLERSADLVAALLAILKAGAAYV 65
Query: 1253 TIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTD 1312
+ P +P ++ +++ ++ L+L+
Sbjct: 66 PLDPSYP------AERLQYMLEDAEPALLLT----------------------------- 90
Query: 1313 DMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSM 1361
+ LAY+ ++ +TG G+++SH A+ + SM
Sbjct: 91 --------------DPDDLAYVIYTSGSTGKPKGVEVSHRALVNFLLSM 125
Score = 35.2 bits (82), Expect = 0.31
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 807 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 866
L+ ++L +R+ ++ A L + GD V ++ DL+ A L GA V + P +
Sbjct: 13 LSYAELDERSNQLAARLRALG-VGPGDRVGVLLERSADLVAALLAILKAGAAYVPLDPSY 71
Query: 867 P 867
P
Sbjct: 72 P 72
Score = 31.8 bits (73), Expect = 3.9
Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 491 EVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLG-FLGPGGLV 549
GE+ + G Y G P L+ F P G L Y R+G L + G L
Sbjct: 283 VPGELYIGGDGVARGYLGRPELTAERFVPDPFDDPGGRL----Y-RTGDLVRWRPDGRLE 337
Query: 550 FVCGSRDG 557
++ G D
Sbjct: 338 YL-GRADD 344
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS). MCS catalyzes the
formation of malonyl-CoA in a two-step reaction
consisting of the adenylation of malonate with ATP,
followed by malonyl transfer from malonyl-AMP to CoA.
Malonic acid and its derivatives are the building blocks
of polyketides and malonyl-CoA serves as the substrate of
polyketide synthases. Malonyl-CoA synthetase has broad
substrate tolerance and can activate a variety of malonyl
acid derivatives. MCS may play an important role in
biosynthesis of polyketides, the important secondary
metabolites with therapeutic and agrochemical utility.
Length = 430
Score = 42.6 bits (101), Expect = 0.002
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 1258
LT +L R+ R+ LL + GD VA++ P + + + G V V + P +
Sbjct: 12 LTYGELDARSGRLAKALLALG-LLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPSY 70
Query: 1259 PQNLQTTLPTVRMIVDVSKSVLVL 1282
P + I+ S+ L++
Sbjct: 71 PA------AELAYILSDSQPSLLV 88
Score = 42.6 bits (101), Expect = 0.002
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 112 TLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAG 171
+LTYG+L +RS ++A L GDR+A++ P + ++ + AG
Sbjct: 11 SLTYGELDARSGRLA--------KALLALGLLPGDRVAVLAPKS--AEYVVLYLAIWRAG 60
Query: 172 IVPVPI 177
V VP+
Sbjct: 61 GVAVPL 66
Score = 42.2 bits (100), Expect = 0.002
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 807 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 866
LT +L R+ R+ LL + GD VA++ P + + + G V V + P +
Sbjct: 12 LTYGELDARSGRLAKALLALG-LLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPSY 70
Query: 867 PQ 868
P
Sbjct: 71 PA 72
Score = 39.9 bits (94), Expect = 0.010
Identities = 42/172 (24%), Positives = 59/172 (34%), Gaps = 40/172 (23%)
Query: 1544 GKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSAR--LV 1601
G LPGV+V I + + +GEI V+ P+ S Y + A+ F+
Sbjct: 261 GLPLPGVEVRIVDEDGGEPLAAGEVGEIQVRGPNVFSEY---WNKPEATAEAFTEDGWFK 317
Query: 1602 TGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDAVFVVGALDETIMLRGMRYHP 1661
TG+ G GY L R S D + G G +
Sbjct: 318 TGDVGV-VDEDGYYRILGRKS-----------------DDIIKSG---------GYKVSA 350
Query: 1662 IDIENSVMRAHKKIAECAVF-----TWTNLLVVVVELDGNESEALDLVPLVT 1708
++IE + H +AE AV W +V VV AL L L
Sbjct: 351 LEIEE-ALLEHPGVAEVAVIGVPDPDWGEAVVAVVVP--EAGAALTLAELRA 399
Score = 33.8 bits (78), Expect = 1.0
Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 25/106 (23%)
Query: 467 GQVMPGCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADG 526
G +PG + +V + EVGEI V S+YW P A
Sbjct: 261 GLPLPGVEVRIV-DEDGGEPLAAGEVGEIQVRGPNVFSEYWNKP------------EATA 307
Query: 527 TALSQDTYTRSGLLGFLGPGGLVFVCGSRDGLMTVTGRKHNADDII 572
A ++D + ++G +G + DG + GRK +DDII
Sbjct: 308 EAFTEDGWFKTGDVGVVDE----------DGYYRILGRK--SDDII 341
Score = 31.1 bits (71), Expect = 6.9
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 255 TPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFKRETGLWHSV 314
PA I YT+ G GV +T + ++ RAL +A +T + ++ L GL++++
Sbjct: 89 DPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWTASDVLLHALPLHHVHGLFNAL 148
Query: 315 LTSVLNGMHAVYIP-YALMKVNPASWMQMIT 344
+ G ++P + + + + IT
Sbjct: 149 HCPLWAGASVEFLPRFDPQERDALRLLPRIT 179
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 42.1 bits (99), Expect = 0.003
Identities = 51/260 (19%), Positives = 88/260 (33%), Gaps = 50/260 (19%)
Query: 139 ESSLKSGDRIALVYPNNDPINFLCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSC 198
++SG R+ALV N+ I + + C+ G + LT + L
Sbjct: 18 AQGIRSGSRVALVGQNS--IEMVLLLHACLLLGAEIAMLNTRLT-----ENERTNQLEDL 70
Query: 199 DIQVALTSDACLKGLPKTAAGEVVAFKGWPKLTWFVTEHLAKTPKDWAPQPRLT------ 252
D+Q+ LT D+ L+ F + L + A T
Sbjct: 71 DVQLLLT-DSLLE------------------EKDFQADSLDRI---EAAGRYETSLSASF 108
Query: 253 -DDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFKRETGLW 311
D A + +T+ G V T + + +TE +N + L +GL
Sbjct: 109 NMDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGL- 167
Query: 312 HSVL-TSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKDHKD 370
S+L ++ G + I ++MI R + + L+ L +
Sbjct: 168 -SILFRWLIEGA-TLRIVDKF-----NQLLEMIANERVTHISLVPTQLNR--LLDEGG-- 216
Query: 371 ISLSSLRLLLVGDGANPWSL 390
+LR +L+G A P L
Sbjct: 217 -HNENLRKILLGGSAIPAPL 235
Score = 39.0 bits (91), Expect = 0.021
Identities = 30/141 (21%), Positives = 49/141 (34%), Gaps = 39/141 (27%)
Query: 1541 LESGKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARL 1600
+ G+ L G ++ I +G GEI V+ + GY Q
Sbjct: 271 PDVGRPLAGREIKIKVDNKEGH------GEIMVKGANLMKGYL----------YQGELTP 314
Query: 1601 VTGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDA-VFVVGALDETIMLRGMRY 1659
G + TG +G L + ++V+G D+ I+ G
Sbjct: 315 AFEQQG--WFNTGDIGELD-------------------GEGFLYVLGRRDDLIISGGENI 353
Query: 1660 HPIDIENSVMRAHKKIAECAV 1680
+P +IE +V+ H I E V
Sbjct: 354 YPEEIE-TVLYQHPGIQEAVV 373
>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase.
2,3-dihydroxybenzoate-AMP ligase activates
2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP
with the release of pyrophosphate. However, it can also
catalyze the ATP-PPi exchange for 2,3-DHB analogs, such
as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB
and 2,5-DHB, but with less efficiency. Proteins in this
family are the stand-alone adenylation components of
non-ribosomal peptide synthases (NRPSs) involved in the
biosynthesis of siderophores, which are low molecular
weight iron-chelating compounds synthesized by many
bacteria to aid in the acquisition of this vital trace
elements. In Escherichia coli, the
2,3-dihydroxybenzoate-AMP ligase is called EntE, the
adenylation component of the enterobactin NRPS system.
Length = 483
Score = 41.0 bits (97), Expect = 0.005
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 807 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 866
LT +L +R+ A LL I GD V + P + + ++ +GA+PV P H
Sbjct: 41 LTYRELDAAVDRLAAGLLALG-IGPGDRVLVQLPNVAEFVILYFALFKLGAIPVLALPAH 99
Score = 41.0 bits (97), Expect = 0.005
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 1258
LT +L +R+ A LL I GD V + P + + ++ +GA+PV P H
Sbjct: 41 LTYRELDAAVDRLAAGLLALG-IGPGDRVLVQLPNVAEFVILYFALFKLGAIPVLALPAH 99
Score = 31.0 bits (71), Expect = 6.3
Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 20/99 (20%)
Query: 79 LPRNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTS 138
L L A R+ T V+D +L TY +L + ++A LL I
Sbjct: 17 LGDLLAANAARHPDRT------AVVDGPRRL----TYRELDAAVDRLAAGLLALGIGP-- 64
Query: 139 ESSLKSGDRIALVYPNNDPINFLCAFYGCIFAGIVPVPI 177
GDR+ + PN F+ ++ G +PV
Sbjct: 65 ------GDRVLVQLPNV--AEFVILYFALFKLGAIPVLA 95
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Bacillus subtilis
termination module Surfactin (SrfA-C). The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl moiety
then forms a thioester to the enzyme-bound cofactor
phosphopantetheine of a peptidyl carrier protein domain.
NRPSs are large multifunctional enzymes which synthesize
many therapeutically useful peptides in bacteria and
fungi via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal toxins,
and enzyme inhibitors. NRPS has a distinct modular
structure in which each module is responsible for the
recognition, activation, and, in some cases, modification
of a single amino acid residue of the final peptide
product. The modules can be subdivided into domains that
catalyze specific biochemical reactions. This family
includes the adenylation domain of the Bacillus subtilis
termination module (Surfactin domain, SrfA-C) which
recognizes a specific amino acid building block, which is
then activated and transferred to the terminal thiol of
the 4'-phosphopantetheine (Ppan) arm of the downstream
peptidyl carrier protein (PCP) domain.
Length = 474
Score = 41.0 bits (97), Expect = 0.006
Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 16/163 (9%)
Query: 1197 QLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 1256
+ LT ++L++RA R+ L R + GD VAL+ +L+ A L GA V + P
Sbjct: 11 RSLTYAELNERANRLARRLRARG-VGPGDVVALLLERSPELVVAILAILKAGAAYVPLDP 69
Query: 1257 PHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDMPK 1316
+P + +++ S + ++L+ A + IL+ +++
Sbjct: 70 AYPAE------RLAFMLEDSGARVLLT--------DESLAPLARADQLPLVILE-EELDA 114
Query: 1317 KKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCR 1359
+ A A+ LAY+ ++ +TG G+ + H V L R
Sbjct: 115 EDAGPPAPAVDADDLAYVMYTSGSTGRPKGVAVPHRGVVRLVR 157
Score = 34.4 bits (80), Expect = 0.51
Identities = 35/169 (20%), Positives = 62/169 (36%), Gaps = 27/169 (15%)
Query: 112 TLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAG 171
+LTY +L R+ ++A L + GD +AL+ + + A + AG
Sbjct: 12 SLTYAELNERANRLARRLR--------ARGVGPGDVVALLLERS--PELVVAILAILKAG 61
Query: 172 IVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKLT 231
VP++ ++++ F+L +V LT + L A + P +
Sbjct: 62 AAYVPLD-----PAYPAERLAFMLEDSGARVLLTD----ESLAPLARAD-----QLPLVI 107
Query: 232 WFVTEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAML 280
P P + D AY+ YT+ G GV V ++
Sbjct: 108 LEEELDAEDAG---PPAPAVDADDLAYVMYTSGSTGRPKGVAVPHRGVV 153
Score = 32.1 bits (74), Expect = 3.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 805 QLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 864
+ LT ++L++RA R+ L R + GD VAL+ +L+ A L GA V + P
Sbjct: 11 RSLTYAELNERANRLARRLRARG-VGPGDVVALLLERSPELVVAILAILKAGAAYVPLDP 69
Query: 865 PHP 867
+P
Sbjct: 70 AYP 72
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA).
DltA belongs to the class I AMP-forming adenylation
domain superfamily, which also includes acetyl-CoA
synthetase, luciferase, and the adenylation domains of
non-ribosomal synthetases. It catalyzes the two-step
activation reaction of D-alanine: the formation of a
substrate-AMP molecule as an intermediate, and then the
transfer of the amino acid adenylate to teichoic acid in
the biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram-positive bacteria.
Length = 447
Score = 40.6 bits (96), Expect = 0.007
Identities = 33/158 (20%), Positives = 51/158 (32%), Gaps = 33/158 (20%)
Query: 1544 GKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTG 1603
G PG++ +I + E GE+ + P + GY + + A+ F
Sbjct: 275 GYPKPGLRALILD-EDGRPVPPGEEGELVIAGPQVSPGY---LNNPEKTAKAFFQD---- 326
Query: 1604 NTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDAVFVVGALDETIMLRGMRYHPID 1663
G+ + RTG L G+ + +G D I L G R +
Sbjct: 327 -EGQRWYRTGDLV---YLEDDGL---------------LVYLGRKDFQIKLHGYRIELEE 367
Query: 1664 IENSVMRAHKKIAECAVFTWTNL-----LVVVVELDGN 1696
IE +RA + E V LV V
Sbjct: 368 IEA-ALRALPGVEEAVVLPVPKGEKVVRLVAFVVGKEG 404
Score = 37.2 bits (87), Expect = 0.089
Identities = 36/158 (22%), Positives = 56/158 (35%), Gaps = 50/158 (31%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 1258
LT ++L +RA+R+ A LL GD VA+ D A CL GA V
Sbjct: 17 LTYAELKERADRLAARLLALGG-RAGDPVAVYGHKSPDAYAAILACLKAGAAYV------ 69
Query: 1259 PQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDMPKKK 1318
P + + I++ + + + D DD
Sbjct: 70 PLDPSQPAERIAKILEAAGPAAL--------------------------VADPDD----- 98
Query: 1319 LAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTS 1356
LAY+ F+ +TG G+++SHA + S
Sbjct: 99 ------------LAYILFTSGSTGKPKGVQISHANLAS 124
Score = 35.3 bits (82), Expect = 0.35
Identities = 21/90 (23%), Positives = 30/90 (33%), Gaps = 11/90 (12%)
Query: 467 GQVMPGCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADG 526
G PG ++ D E GE+ +A Y P + F
Sbjct: 275 GYPKPGLRALIL--DEDGRPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDE----- 327
Query: 527 TALSQDTYTRSGLLGFLGPGGLVFVCGSRD 556
Q Y R+G L +L GL+ G +D
Sbjct: 328 ---GQRWY-RTGDLVYLEDDGLLVYLGRKD 353
Score = 33.7 bits (78), Expect = 0.89
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 15/91 (16%)
Query: 95 YKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPN 154
K P L G TLTY +L R+ ++A R ++GD +A VY +
Sbjct: 2 AKHPDRPALVVGGD---TLTYAELKERADRLA--------ARLLALGGRAGDPVA-VYGH 49
Query: 155 NDPINFLCAFYGCIFAGI--VPVPIEVPLTR 183
P + A C+ AG VP+ P R
Sbjct: 50 KSP-DAYAAILACLKAGAAYVPLDPSQPAER 79
Score = 32.2 bits (74), Expect = 3.0
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 807 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGA--VPVTIRP 864
LT ++L +RA+R+ A LL GD VA+ D A CL GA VP+
Sbjct: 17 LTYAELKERADRLAARLLALGG-RAGDPVAVYGHKSPDAYAAILACLKAGAAYVPLDPSQ 75
Query: 865 P 865
P
Sbjct: 76 P 76
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and
Bubblegum-like very long-chain fatty acid CoA
synthetases. This family includes long-chain fatty acid
(C12-C20) CoA synthetases and Bubblegum-like very
long-chain (>C20) fatty acid CoA synthetases. FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
Eukaryotes generally have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells. Drosophila melanogaster
mutant bubblegum (BGM) have elevated levels of
very-long-chain fatty acids (VLCFA) caused by a defective
gene later named bubblegum. The human homolog (hsBG) of
bubblegum has been characterized as a very long chain
fatty acid CoA synthetase that functions specifically in
the brain; hsBG may play a central role in brain VLCFA
metabolism and myelinogenesis. Free fatty acids must be
"activated" to their CoA thioesters before participating
in most catabolic and anabolic reactions.
Length = 456
Score = 40.2 bits (95), Expect = 0.008
Identities = 35/141 (24%), Positives = 48/141 (34%), Gaps = 46/141 (32%)
Query: 1544 GKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSAR--LV 1601
GK LPGV+V IA D GEI V+ P+ GY Y + A+ L
Sbjct: 269 GKPLPGVEVRIAE--------D---GEILVRGPNVMKGY---YKNPEATAEALDEDGWLH 314
Query: 1602 TGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDAVFVVGALDETIMLR-GMRYH 1660
TG+ G L GFL + + I+ G
Sbjct: 315 TGDIGRLDED----GFLV------------------------ITDRKKDLIVTAGGKNIA 346
Query: 1661 PIDIENSVMRAHKKIAECAVF 1681
P IEN++ I++ V
Sbjct: 347 PQPIENALKA-SPYISQAVVV 366
Score = 40.2 bits (95), Expect = 0.010
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 1197 QLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 1256
Q +T ++L +R R+ A L+ + GD VA++ + + A L GAVPV I P
Sbjct: 4 QTITWAELAERVRRLAAGLIALG-VKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYP 62
Query: 1257 PHPQNLQTTLPTVRMIVDVSKSVLVL 1282
++ V I++ S + +V
Sbjct: 63 ------TSSPEEVAYILNDSGARVVF 82
Score = 38.3 bits (90), Expect = 0.037
Identities = 42/217 (19%), Positives = 74/217 (34%), Gaps = 70/217 (32%)
Query: 112 TLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAG 171
T+T+ +L R ++A L+ +K GDR+A++ N ++ A + AG
Sbjct: 5 TITWAELAERVRRLAAGLI--------ALGVKPGDRVAILAENR--PEWVIADLAILAAG 54
Query: 172 IVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKLT 231
VPVPI + +++ ++L +V D
Sbjct: 55 AVPVPI-----YPTSSPEEVAYILNDSGARVVFVED------------------------ 85
Query: 232 WFVTEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACH 291
P D A + YT+ G+ GV +T +L+ AL +
Sbjct: 86 ---------KPDD-----------LATLIYTSGTTGNPKGVMLTHRNLLAQAAALLEVIP 125
Query: 292 YTEGENMVCVLDFKRETGLWHSVLTSVLNGMHAVYIP 328
+ G+ ++ L L H V Y+P
Sbjct: 126 LSPGDRVLSFLP------LAH-----VFEQRLGEYLP 151
Score = 37.5 bits (88), Expect = 0.057
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 805 QLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 864
Q +T ++L +R R+ A L+ + GD VA++ + + A L GAVPV I P
Sbjct: 4 QTITWAELAERVRRLAAGLIALG-VKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYP 62
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like.
Length = 560
Score = 40.2 bits (94), Expect = 0.010
Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 5/106 (4%)
Query: 1185 PGVSSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGC 1244
G +++ S ++ S+L + + A L + GD V L+ P + F
Sbjct: 53 NGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAV 112
Query: 1245 LYVGAVPVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKL 1290
L +G + T+ P + + +VD S + S +NV KL
Sbjct: 113 LSLGGIVTTMNP-----SSSLGEIKKRVVDCSVGLAFTSPENVEKL 153
Score = 33.3 bits (76), Expect = 1.3
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 793 IFTLLNSKGSAAQL-------LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDL 845
IF+ N G A + ++ S+L + + A L + GD V L+ P +
Sbjct: 46 IFSHHNHNGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYF 105
Query: 846 ICAFYGCLYVGAVPVTIRP 864
F L +G + T+ P
Sbjct: 106 PVIFLAVLSLGGIVTTMNP 124
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.
Length = 573
Score = 40.0 bits (94), Expect = 0.012
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 808 TCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPV 860
T ++L K+ R A L + GD VA++ P I AFY L +GAV V
Sbjct: 59 TYAELGKQVRRAAAGL-RALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVV 110
Score = 40.0 bits (94), Expect = 0.012
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 1200 TCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPV 1252
T ++L K+ R A L + GD VA++ P I AFY L +GAV V
Sbjct: 59 TYAELGKQVRRAAAGL-RALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVV 110
>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated.
Length = 540
Score = 39.7 bits (93), Expect = 0.013
Identities = 32/150 (21%), Positives = 52/150 (34%), Gaps = 40/150 (26%)
Query: 1548 PGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGE 1607
P +V +P+ D GEI +++P GY + A+ + +
Sbjct: 357 PEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYL---DNPDATARALTD--------D 405
Query: 1608 LYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDAVFV-VGALDETIMLRGMRYHPIDIEN 1666
Y RTG LG+ R D FV + +++ L G +P +IE+
Sbjct: 406 GYFRTGDLGYTR-------------------GDGQFVYQTRMGDSLRLGGFLVNPAEIEH 446
Query: 1667 SVMRAHKKIAECAVFTWTNLLVVVVELDGN 1696
+ A +A VV DG
Sbjct: 447 -ALEALPGVAAAQ--------VVGATRDGK 467
>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated.
Length = 502
Score = 39.1 bits (92), Expect = 0.019
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 18/111 (16%)
Query: 100 ATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPIN 159
A ++ P+G+ +TYG+L +RS ++A+ L L+ GD +A++ NN
Sbjct: 2 AVIMAPSGE---VVTYGELEARSNRLAHGL--------RALGLREGDVVAILLENN--PE 48
Query: 160 FLCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACL 210
F ++ +G+ PI LT + +I +++ +V + S A
Sbjct: 49 FFEVYWAARRSGLYYTPINWHLT-----AAEIAYIVDDSGAKVLIVSAALA 94
Score = 34.1 bits (79), Expect = 0.70
Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 17/96 (17%)
Query: 1598 ARLVTGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDAVFVVGALDE------- 1650
L G G +Y F P A A P G + D VG LDE
Sbjct: 333 NELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGD----VGYLDEDGYLYLT 388
Query: 1651 -----TIMLRGMRYHPIDIENSVMRAHKKIAECAVF 1681
I+ G+ +P +IEN ++ H K+A+ AVF
Sbjct: 389 DRKSDMIISGGVNIYPQEIENLLVT-HPKVADVAVF 423
Score = 32.6 bits (75), Expect = 2.0
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 12/88 (13%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGA--VPVTIRP 1256
+T +L R+ R A L + GD VA++ + ++ G P+
Sbjct: 12 VTYGELEARSNR-LAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPI---- 66
Query: 1257 PHPQNLQTTLPTVRMIVDVSKS-VLVLS 1283
N T + IVD S + VL++S
Sbjct: 67 ----NWHLTAAEIAYIVDDSGAKVLIVS 90
>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles and Arabidopsis. This
family includes fatty acyl-CoA synthetases that can
activate medium to long-chain fatty acids. These enzymes
catalyze the ATP-dependent acylation of fatty acids in a
two-step reaction. The carboxylate substrate first reacts
with ATP to form an acyl-adenylate intermediate, which
then reacts with CoA to produce an acyl-CoA ester. Fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid. Also included
in this family are acyl activating enzymes from
Arabidopsis, which contains a large number of proteins
from this family with up to 63 different genes, many of
which are uncharacterized.
Length = 520
Score = 39.2 bits (92), Expect = 0.021
Identities = 45/200 (22%), Positives = 81/200 (40%), Gaps = 32/200 (16%)
Query: 1167 LGFLRRTSPAGVAGAPVPPGVSSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDH 1226
L FL R A P + V + T + + R R+ + L + I GD
Sbjct: 7 LSFLER------AAKVYPDRTAVVYG---DRRYTYRETYDRCRRLASALSKL-GIGKGDV 56
Query: 1227 VALIFPPGIDLICAFYGCLYVGAVPVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQ- 1285
VA++ P ++ A +G GAV V + N + + I++ S++ ++ +Q
Sbjct: 57 VAVLAPNTPAMLEAHFGVPMAGAVLVPL------NTRLDADDIAFILNHSEAKVLFVDQE 110
Query: 1286 ------NVIKLLKSKEASNVVDIKSWPTILDTDDMPKKKLAA------LYRAPTAE--ML 1331
+ LL +KE + I P D+++ + L A L P E +
Sbjct: 111 FLSLAEEALALLSTKEIIDTEIIVISPAAEDSEEGDYEDLLAGGDPDPLPIPPDDEWDPI 170
Query: 1332 AYLDFSVSTTGMLAGIKMSH 1351
+ L+++ TTG G+ +H
Sbjct: 171 S-LNYTSGTTGNPKGVVYTH 189
Score = 34.5 bits (80), Expect = 0.59
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 808 TCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTI 862
T + + R R+ + L + I GD VA++ P ++ A +G GAV V +
Sbjct: 31 TYRETYDRCRRLASALSKL-GIGKGDVVAVLAPNTPAMLEAHFGVPMAGAVLVPL 84
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as an
intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA ligation
is believed to be the initial step in the bile acid
7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 38.6 bits (91), Expect = 0.023
Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 43/158 (27%)
Query: 1544 GKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTG 1603
G+ +PGV+V I + + + + +GEI V+ P +GY + A+ +
Sbjct: 172 GRPVPGVEVRIVDEDGR-ELPPGEVGEIVVRGPAVMAGY---WNRPEATAEALRDGWLH- 226
Query: 1604 NTGELYARTGYL---GFLRRTSPAGVAGAPVPPGVSKLHDAVFVVGALDETIMLRGMRYH 1660
TG+L GYL G+L ++V + I+ G +
Sbjct: 227 -TGDL----GYLDEDGYL------------------------YIVDRKKDMIISGGENIY 257
Query: 1661 PIDIENSVMRAHKKIAECAVF-----TWTNLLVVVVEL 1693
P ++EN V+ AH +A+ AV W +V VV L
Sbjct: 258 PAEVEN-VLLAHPAVADVAVIGVPDEEWGEAVVAVVVL 294
Score = 32.1 bits (74), Expect = 2.8
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 18/99 (18%)
Query: 466 CGQVMPGCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLAD 525
G+ +PG + +V D EVGEI V + YW P + +
Sbjct: 171 VGRPVPGVEVRIV--DEDGRELPPGEVGEIVVRGPAVMAGYWNRPEATAEALR------- 221
Query: 526 GTALSQDTYTRSGLLGFLGPGGLVFVCG-SRDGLMTVTG 563
D + +G LG+L G +++ +D M ++G
Sbjct: 222 ------DGWLHTGDLGYLDEDGYLYIVDRKKD--MIISG 252
>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated.
Length = 563
Score = 38.9 bits (90), Expect = 0.026
Identities = 39/185 (21%), Positives = 70/185 (37%), Gaps = 28/185 (15%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP-- 1256
+T S H + +R A L++ + GD VA++ P + +YG L G + V P
Sbjct: 50 ITFSVFHDKVKRF-ANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLY 108
Query: 1257 ------------------------PHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLK 1292
P N+Q+ +IV L + ++
Sbjct: 109 TERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQ 168
Query: 1293 SKEASNVVDIKSWPTILDTDDMPKKKLAALYRAPTAEM-LAYLDFSVSTTGMLAGIKMSH 1351
K+++ VV + TI + + K+ + E LA L ++ TTG G+ ++H
Sbjct: 169 KKQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTH 228
Query: 1352 AAVTS 1356
+ S
Sbjct: 229 KNLVS 233
Score = 34.2 bits (78), Expect = 0.65
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
Query: 910 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLCCPSNHPTPSPSE 969
+T S H + +R A L++ + GD VA++ P + +YG L +P
Sbjct: 50 ITFSVFHDKVKRF-ANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLY 108
Query: 970 SSNHATHRQNDSGRQQI-CSSLIQPKCDQTSQVEKLHDAV 1008
+ ++ +DSG + I C L+ P+ K+ +
Sbjct: 109 TERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVI 148
Score = 33.9 bits (77), Expect = 1.00
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 11/102 (10%)
Query: 807 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP-- 864
+T S H + +R A L++ + GD VA++ P + +YG L G + V P
Sbjct: 50 ITFSVFHDKVKRF-ANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLY 108
Query: 865 --------PHPQNLQTTLPTHQFISEILKWRAASTSEHVIFT 898
H + L + ++A+ EHVI T
Sbjct: 109 TERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVT 150
>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily
similar to Acetoacetyl-CoA synthetase. This
uncharacterized acyl-CoA synthetase family is highly
homologous to acetoacetyl-CoA synthetase. However, the
proteins in this family exist in only bacteria and
archaea. AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms.
Length = 474
Score = 38.4 bits (90), Expect = 0.037
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 807 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTI 862
T S+L + R+ + L + GD V + P + + A +GA+ V I
Sbjct: 8 WTYSELAREVNRLASGLAALG-LGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPI 62
Score = 38.4 bits (90), Expect = 0.037
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTI 1254
T S+L + R+ + L + GD V + P + + A +GA+ V I
Sbjct: 8 WTYSELAREVNRLASGLAALG-LGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPI 62
Score = 31.9 bits (73), Expect = 3.3
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 10/66 (15%)
Query: 112 TLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAG 171
T TY +L ++A + + L GDR+ + P + A G
Sbjct: 7 TWTYSELAREVNRLA--------SGLAALGLGKGDRVGIYMPMIPEA--VVALLAIAKIG 56
Query: 172 IVPVPI 177
+ VPI
Sbjct: 57 AIAVPI 62
Score = 31.1 bits (71), Expect = 6.9
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 910 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCL 956
T S+L + R+ + L + GD V + P + + A
Sbjct: 8 WTYSELAREVNRLASGLAALG-LGKGDRVGIYMPMIPEAVVALLAIA 53
>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated.
Length = 705
Score = 38.5 bits (89), Expect = 0.042
Identities = 86/396 (21%), Positives = 145/396 (36%), Gaps = 73/396 (18%)
Query: 1195 AAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTI 1254
AA ++T Q+H A R+G +L R +++GD V L P DL+ CL G +
Sbjct: 27 AADVVTHGQIHDGAARLGEVLRNRG-LSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLA 85
Query: 1255 RPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDM 1314
P ++ L ++ LV+++ + + S V + L ++
Sbjct: 86 NPELHRDDH-ALAARN-----TEPALVVTSDALRDRFQP---SRVAE----AAELMSE-- 130
Query: 1315 PKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSM-KLACELYPSRHI 1373
+ Y + LAY ++ TTG HA + +M + A L P
Sbjct: 131 AARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPE-DT 189
Query: 1374 ALC---LDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSY 1430
LC + GLG ++W + S +I + V A LSA V Y
Sbjct: 190 GLCSARMYFAYGLGNSVWFPLATGG---SAVINSAPVTPEAAAILSARFGPSVL-----Y 241
Query: 1431 GVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALGLSPRAV 1490
GV + + P + +R CVV A E + L + F + +
Sbjct: 242 GVPNFFARVIDSCSPD------SFRSLR-CVVSAGEALELGLAERLMEFFGGIPI----- 289
Query: 1491 STSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLPGV 1550
L G S E +V + V+ +L G++LP
Sbjct: 290 -------------LDGIGSTEVGQTFVS---------NRVDEWRLGTL-----GRVLPPY 322
Query: 1551 KVIIANPE--TKGQCGDSHLGEIWVQSPHNASGYFS 1584
++ + P+ T G + G++WV+ P A GY++
Sbjct: 323 EIRVVAPDGTTAGPGVE---GDLWVRGPAIAKGYWN 355
Score = 33.5 bits (76), Expect = 1.4
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 803 AAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTI 862
AA ++T Q+H A R+G +L R +++GD V L P DL+ CL G +
Sbjct: 27 AADVVTHGQIHDGAARLGEVLRNRG-LSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLA 85
Query: 863 RP 864
P
Sbjct: 86 NP 87
Score = 32.3 bits (73), Expect = 2.6
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 906 AAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCL 956
AA ++T Q+H A R+G +L R +++GD V L P DL+ CL
Sbjct: 27 AADVVTHGQIHDGAARLGEVLRNRG-LSSGDRVLLCLPDSPDLVQLLLACL 76
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated.
Length = 567
Score = 38.1 bits (89), Expect = 0.050
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 805 QLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 864
++T ++L + ++R ALL +R + GD VA+ P F+G L +GAV V + P
Sbjct: 57 HVITYAELDELSDRFAALLRQRG-VGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSP 115
Score = 38.1 bits (89), Expect = 0.050
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 1197 QLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 1256
++T ++L + ++R ALL +R + GD VA+ P F+G L +GAV V + P
Sbjct: 57 HVITYAELDELSDRFAALLRQRG-VGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSP 115
>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated.
Length = 533
Score = 37.6 bits (88), Expect = 0.061
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 807 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTI 862
LT ++L +RA R+ L+ + + GDHV + I+ + A G AVPV +
Sbjct: 29 LTYAELEERANRLAHYLIAQG-LGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNV 83
Score = 37.6 bits (88), Expect = 0.061
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTI 1254
LT ++L +RA R+ L+ + + GDHV + I+ + A G AVPV +
Sbjct: 29 LTYAELEERANRLAHYLIAQG-LGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNV 83
>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.
Length = 557
Score = 37.7 bits (88), Expect = 0.062
Identities = 49/200 (24%), Positives = 82/200 (41%), Gaps = 52/200 (26%)
Query: 113 LTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPN--NDPINFLCAFYGCIFA 170
+TYG+L S +A L ++ L G R+A++ PN P+ A + A
Sbjct: 49 ITYGELDELSRALAAWLQSR--------GLAKGARVAIMMPNVLQYPV----AIAAVLRA 96
Query: 171 GIVPV-------PIEVPLTRRDAGSQQIGFLLG--SCDIQVALTSDACLKGLPKTAAGEV 221
G V V P E+ +D+G++ I +L + +Q L A +K + + G++
Sbjct: 97 GYVVVNVNPLYTPRELEHQLKDSGAEAI-VVLENFATTVQQVLAKTA-VKHVVVASMGDL 154
Query: 222 VAFKGWPKLTWFVTEHLAKTPKDWA-PQ------------------PRLTDDTPAYIEYT 262
+ FKG + FV + K W+ P +L D A+++YT
Sbjct: 155 LGFKGH--IVNFVVRRVKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYT 212
Query: 263 TDRDGSVMGVTVTRAAMLSH 282
G G V++ A L H
Sbjct: 213 ----GGTTG--VSKGATLLH 226
>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Saframycin A gene
cluster from Streptomyces lavendulae. The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl moiety
then forms a thioester to the enzyme-bound cofactor
phosphopantetheine of a peptidyl carrier protein domain.
NRPSs are large multifunctional enzymes which synthesize
many therapeutically useful peptides in bacteria and
fungi via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal toxins,
and enzyme inhibitors. NRPS has a distinct modular
structure in which each module is responsible for the
recognition, activation, and in some cases, modification
of a single amino acid residue of the final peptide
product. The modules can be subdivided into domains that
catalyze specific biochemical reactions. This family
includes the saframycin A gene cluster from Streptomyces
lavendulae which implicates the NRPS system for
assembling the unusual tetrapeptidyl skeleton in an
iterative manner. It also includes saframycin Mx1
produced by Myxococcus xanthus NRPS.
Length = 449
Score = 37.7 bits (88), Expect = 0.064
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 1193 RSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPV 1252
+ LT ++L++RA R+ A L A + V + DL+ A L GA V
Sbjct: 19 VCGDESLTYAELNRRANRLAARL-RAAGVGPESRVGVCLRRSPDLVVALLAVLKAGAAYV 77
Query: 1253 TIRPPHPQNLQTTLPTVRMIVDVSKSVLVLS 1283
+ P +P + I++ + + LVL+
Sbjct: 78 PLDPAYPPER------LAYILEDAGARLVLT 102
Score = 36.1 bits (84), Expect = 0.19
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 802 SAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVT 861
+ LT ++L++RA R+ A L A + V + DL+ A L GA V
Sbjct: 20 CGDESLTYAELNRRANRLAARL-RAAGVGPESRVGVCLRRSPDLVVALLAVLKAGAAYVP 78
Query: 862 IRPPHPQN-LQTTLPTHQ 878
+ P +P L L
Sbjct: 79 LDPAYPPERLAYILEDAG 96
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE). PrpE catalyzes the
first step of the 2-methylcitric acid cycle for
propionate catabolism. It activates propionate to
propionyl-CoA in a two-step reaction, which proceeds
through a propionyl-AMP intermediate and requires ATP and
Mg2+. In Salmonella enterica, the PrpE protein is
required for growth of S. enterica on propionate and can
substitute for the acetyl-CoA synthetase (Acs) enzyme
during growth on acetate. PrpE can also activate acetate,
3HP, and butyrate to their corresponding CoA-thioesters,
although with less efficiency.
Length = 607
Score = 37.3 bits (87), Expect = 0.088
Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 42/146 (28%)
Query: 1544 GKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTG 1603
GK +PG V + + + + G LG I ++ P +L+GD+ +
Sbjct: 404 GKPVPGYDVQVLDETGE-ELGPGELGNIVIKLPLPPGCLLTLWGDDERF----------- 451
Query: 1604 NTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDA--------VFVVGALDETIMLR 1655
+ YL PG D+ +FV+G D+ I +
Sbjct: 452 -------KKLYLNKF--------------PGYYDTGDSGYKDEDGYLFVMGRTDDVINVA 490
Query: 1656 GMRYHPIDIENSVMRAHKKIAECAVF 1681
G R ++E SV++ H +AECAV
Sbjct: 491 GHRLSTGEMEESVLK-HPDVAECAVV 515
Score = 32.7 bits (75), Expect = 2.4
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 1008 VFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVF 1047
+FV+G D+ I + G R ++E SV++ H +AECAV
Sbjct: 477 LFVMGRTDDVINVAGHRLSTGEMEESVLK-HPDVAECAVV 515
>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase.
Length = 537
Score = 37.3 bits (87), Expect = 0.090
Identities = 46/173 (26%), Positives = 68/173 (39%), Gaps = 31/173 (17%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP-- 1256
T + + + RV A L + I GD V L+ P + + AF G GAV T P
Sbjct: 51 YTYADVELLSRRVAAGL-HKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFY 109
Query: 1257 -PHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDMP 1315
P Q ++I+ S V KL E V T++ DD P
Sbjct: 110 TPAEIAKQAKASGAKLIITQS--------CYVDKLKGLAEDDGV-------TVVTIDDPP 154
Query: 1316 KKKL--AALYRAPTAEM---------LAYLDFSVSTTGMLAGIKMSHAA-VTS 1356
+ L + L +A E+ + L +S TTG+ G+ ++H VTS
Sbjct: 155 EGCLHFSELTQADENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTS 207
Score = 35.0 bits (81), Expect = 0.36
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 801 GSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPV 860
G+ ++ T + + + RV A L + I GD V L+ P + + AF G GAV
Sbjct: 45 GATGRVYTYADVELLSRRVAAGL-HKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTT 103
Query: 861 TIRP 864
T P
Sbjct: 104 TANP 107
>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 359
Score = 36.9 bits (86), Expect = 0.092
Identities = 23/111 (20%), Positives = 37/111 (33%), Gaps = 18/111 (16%)
Query: 462 TLQDCGQVMPGCIMTVVKMD---SPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFK 518
G +P + V K+D + C EVG + + Y
Sbjct: 173 RPGSVGLRLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGY------------ 220
Query: 519 VTPLLADGTALSQDTYTRSGLLGFLGPGGLVFVCGSRDGLMTVTGRKHNAD 569
+ G L D + +G LG + G +++ G L+ G HN D
Sbjct: 221 LNDAHNAGARLE-DGWLNTGDLGRIDADGYLWLTGRAKDLIIRGG--HNID 268
>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL). CBAL catalyzes
the conversion of 4-chlorobenzoate (4-CB) to
4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step
adenylation and thioester-forming reactions.
4-Chlorobenzoate (4-CBA) is an environmental pollutant
derived from microbial breakdown of aromatic pollutants,
such as polychlorinated biphenyls (PCBs), DDT, and
certain herbicides. The 4-CBA degrading pathway converts
4-CBA to the metabolite 4-hydroxybezoate (4-HBA),
allowing some soil-dwelling microbes to utilize 4-CBA as
an alternate carbon source. This pathway consists of
three chemical steps catalyzed by 4-CBA-CoA ligase,
4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in
sequential reactions.
Length = 495
Score = 37.1 bits (86), Expect = 0.096
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 1179 AGAPVPPGVSSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLI 1238
A P + VD +L T S+L R E V A L R + VA++ P +D +
Sbjct: 10 AATRAPDACALVDPARGLRL-TYSELRARVEGVAARLHARG-VRPQQRVAVVAPNSVDAV 67
Query: 1239 CAFYGCLYVGAVPVTIRP 1256
A +GAVP + P
Sbjct: 68 IALLALHRLGAVPALMNP 85
Score = 34.8 bits (80), Expect = 0.41
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 775 QFISEILKWRAASTSEHVIFTLLNSKGSAAQLLTCSQLHKRAERVGALLLERAKINTGDH 834
Q + E+L+ A + L++ LT S+L R E V A L R +
Sbjct: 1 QTVFEMLRRAATRAPDAC--ALVDPARGLR--LTYSELRARVEGVAARLHARG-VRPQQR 55
Query: 835 VALIFPPGIDLICAFYGCLYVGAVPVTIRP 864
VA++ P +D + A +GAVP + P
Sbjct: 56 VAVVAPNSVDAVIALLALHRLGAVPALMNP 85
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM).
MACS catalyzes the two-step activation of medium chain
fatty acids (containing 4-12 carbons). The carboxylate
substrate first reacts with ATP to form an acyl-adenylate
intermediate, which then reacts with CoA to produce an
acyl-CoA ester. The acyl-CoA is a key intermediate in
many important biosynthetic and catabolic processes.
Length = 430
Score = 36.2 bits (84), Expect = 0.17
Identities = 31/139 (22%), Positives = 47/139 (33%), Gaps = 32/139 (23%)
Query: 1544 GKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLY-GDESEYAQQF-SARLV 1601
G+ PG +V I + E G+I V+ G F Y D + +
Sbjct: 252 GRPAPGYRVAIIDDEGNE-LPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATIRGDWYL 310
Query: 1602 TGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDAVFVVGALDETIMLRGMRYHP 1661
TG+ GY F VG D+ I G R P
Sbjct: 311 TGDRAI-KDEDGYFWF---------------------------VGRADDVIKSSGYRIGP 342
Query: 1662 IDIENSVMRAHKKIAECAV 1680
++E++++ H +AE AV
Sbjct: 343 FEVESALIE-HPAVAEAAV 360
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated.
Length = 546
Score = 36.1 bits (84), Expect = 0.17
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 807 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 864
++ +L + AER+ L + + GD V L + A+Y L AV V + P
Sbjct: 36 ISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNP 93
Score = 36.1 bits (84), Expect = 0.17
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 1256
++ +L + AER+ L + + GD V L + A+Y L AV V + P
Sbjct: 36 ISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNP 93
>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated.
Length = 560
Score = 36.2 bits (84), Expect = 0.18
Identities = 50/201 (24%), Positives = 80/201 (39%), Gaps = 50/201 (24%)
Query: 112 TLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPN--NDPINFLCAFYGCIF 169
+T+ KL RS A L + LK GDR+AL+ PN PI A +G +
Sbjct: 48 VMTFRKLEERSRAFAAYL-------QNGLGLKKGDRVALMMPNLLQYPI----ALFGILR 96
Query: 170 AGIVPV-------PIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVV 222
AG++ V P E+ D+G++ I + + +K + T G+ +
Sbjct: 97 AGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTPVKHVILTRMGDQL 156
Query: 223 AFKGWPKLTW--FVTEHLAK-TPKDWAPQ------------------PRLTDDTPAYIEY 261
+ K T FV +++ + PK P P L + A+++Y
Sbjct: 157 ST---AKGTLVNFVVKYIKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQY 213
Query: 262 TTDRDGSVMGVTVTRAAMLSH 282
T G G V + AML+H
Sbjct: 214 T----GGTTG--VAKGAMLTH 228
Score = 31.9 bits (73), Expect = 3.9
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 20/119 (16%)
Query: 805 QLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 864
+++T +L +R+ A L + GD VAL+ P + A +G L G + V + P
Sbjct: 47 EVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIVVNVNP 106
Query: 865 PH-PQNLQTTLPTHQ--------------FISEILKWRAASTSEHVIFTLLNSKGSAAQ 908
+ P+ L+ HQ F + K + +HVI T + + S A+
Sbjct: 107 LYTPRELE-----HQLNDSGAKAIVIVSNFAHTLEKVVFKTPVKHVILTRMGDQLSTAK 160
Score = 31.6 bits (72), Expect = 4.5
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 1197 QLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 1256
+++T +L +R+ A L + GD VAL+ P + A +G L G + V + P
Sbjct: 47 EVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIVVNVNP 106
>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 439
Score = 36.2 bits (84), Expect = 0.18
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 808 TCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 864
T QL + R+ L E + GD V + P + A +GAV V +
Sbjct: 8 TFGQLKDASNRLANALRELG-VERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSV 63
Score = 36.2 bits (84), Expect = 0.18
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 1200 TCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 1256
T QL + R+ L E + GD V + P + A +GAV V +
Sbjct: 8 TFGQLKDASNRLANALRELG-VERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSV 63
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed.
Length = 547
Score = 36.2 bits (84), Expect = 0.18
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 785 AASTSEHVIFTLLNSKGSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGID 844
AS + T + A + T +L +RV A+ L R + GD V+ P +
Sbjct: 34 VASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRV-AVGLARLGVGRGDVVSCQLPNWWE 92
Query: 845 LICAFYGCLYVGAVPVTIRP 864
+ C +GAV + P
Sbjct: 93 FTVLYLACSRIGAVLNPLMP 112
Score = 33.5 bits (77), Expect = 1.3
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 1176 AGVAGAPVPPGVSSV-DTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPG 1234
A VA P V++V A + T +L +RV A+ L R + GD V+ P
Sbjct: 32 ACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRV-AVGLARLGVGRGDVVSCQLPNW 90
Query: 1235 IDLICAFYGCLYVGAVPVTIRP 1256
+ + C +GAV + P
Sbjct: 91 WEFTVLYLACSRIGAVLNPLMP 112
>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 542
Score = 35.9 bits (83), Expect = 0.21
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 803 AAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTI 862
+ L+ ++L +RA+R+ A L R I GD V + P + F+ L +G PV
Sbjct: 50 GERRLSYAELDQRADRLAAGL-RRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAPVLA 108
Query: 863 RPPH 866
P H
Sbjct: 109 LPSH 112
Score = 35.9 bits (83), Expect = 0.21
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 1195 AAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTI 1254
+ L+ ++L +RA+R+ A L R I GD V + P + F+ L +G PV
Sbjct: 50 GERRLSYAELDQRADRLAAGL-RRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAPVLA 108
Query: 1255 RPPH 1258
P H
Sbjct: 109 LPSH 112
>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA
synthetase (VL-FACS). This family of very long-chain
fatty acid CoA synthetase is named bubblegum because
Drosophila melanogaster mutant bubblegum (BGM) has
elevated levels of very-long-chain fatty acids (VLCFA)
caused by a defective gene of this family. The human
homolog (hsBG) has been characterized as a very long
chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. VL-FACS is
involved in the first reaction step of very long chain
fatty acid degradation. It catalyzes the formation of
fatty acyl-CoA in a two-step reaction: the formation of
a fatty acyl-AMP molecule as an intermediate, and the
formation of a fatty acyl-CoA. Free fatty acids must be
"activated" to their CoA thioesters before participating
in most catabolic and anabolic reactions.
Length = 594
Score = 35.4 bits (82), Expect = 0.27
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 23/100 (23%)
Query: 456 NSLTSLTLQDCGQVMPGCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNT 515
++ + L CG+ +PGC + D+ D +GEIC+ WG
Sbjct: 361 SNPQNYRLLSCGKALPGCETKIHNPDA-------DGIGEICI---------WG-----RH 399
Query: 516 TFKVTPLLADGT--ALSQDTYTRSGLLGFLGPGGLVFVCG 553
F + + T A+ +D + SG LGFL G +++ G
Sbjct: 400 VFMGYLNMEEKTEEAIDEDGWLHSGDLGFLDDDGFLYITG 439
Score = 31.6 bits (72), Expect = 4.1
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 17/96 (17%)
Query: 1529 LVERGSPHSLC------LLESGKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGY 1582
+ E PH++ LL GK LPG + I NP+ G GEI + H GY
Sbjct: 351 MSETSGPHTVSNPQNYRLLSCGKALPGCETKIHNPDADGI------GEICIWGRHVFMGY 404
Query: 1583 FSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFL 1618
++ +++E A L +G+ G L GFL
Sbjct: 405 LNM-EEKTEEAIDEDGWLHSGDLGFLDDD----GFL 435
>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase.
Length = 563
Score = 35.2 bits (81), Expect = 0.35
Identities = 62/288 (21%), Positives = 104/288 (36%), Gaps = 61/288 (21%)
Query: 1336 FSVSTTGMLAGIKMSHAA--VTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSV 1393
F+ TTG G+ +SH+A V SL K+A Y + L P C +G L+ +
Sbjct: 179 FTSGTTGRPKGVTISHSALIVQSLA---KIAIVGYGEDDVYLHTAPLCHIGGLSSALAML 235
Query: 1394 YSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIA 1453
G +L+P + + L A+ Q+ V ++P + A I+
Sbjct: 236 MVGACHVLLP----KFDAKAALQAIKQHNVTSMI---------------TVPAMMADLIS 276
Query: 1454 LG----------CVRTCV-----VVAEERPRIHLTSAFSKLFSALGLSPRAVSTSFGCRV 1498
L VR + + + P +KLFSA G++ S +F
Sbjct: 277 LTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTF---- 332
Query: 1499 NIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLPGVKVIIANPE 1558
+ L +P+ ++ P +C+ GK P V++ I E
Sbjct: 333 ---MTLH-----DPTLESPKQTLQTVNQTKSSSVHQPQGVCV---GKPAPHVELKIGLDE 381
Query: 1559 TKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTG 1606
+ S +G I + PH GY+ + + L TG+ G
Sbjct: 382 S------SRVGRILTRGPHVMLGYWGQNSETASVLSN-DGWLDTGDIG 422
>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional.
Length = 1296
Score = 35.4 bits (82), Expect = 0.37
Identities = 26/149 (17%), Positives = 57/149 (38%), Gaps = 17/149 (11%)
Query: 1208 AERVGAL--LLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPHPQNLQTT 1265
E+V AL LL + GD VA+ P + L A + + GA + + +P +
Sbjct: 490 REQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLPLDTGYPDD---- 545
Query: 1266 LPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDMPKKKLAALYRA 1325
++M+++ ++ L+++ + + + + P +
Sbjct: 546 --RLKMMLEDARPSLLITTADQLPRFADVPDLTSLCYNAPLA--PQGAAPL-------QL 594
Query: 1326 PTAEMLAYLDFSVSTTGMLAGIKMSHAAV 1354
AY+ F+ +TG G+ + A+
Sbjct: 595 SQPHHTAYIIFTSGSTGRPKGVMVGQTAI 623
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated.
Length = 562
Score = 34.7 bits (80), Expect = 0.44
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 31/113 (27%)
Query: 75 VPSGLPRN------------LEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRS 122
P+G+ L+ + QR+ P + L GK TLTYG+L S
Sbjct: 10 YPAGIAAEINPDEYPNIQAVLKQSCQRFADK----PAFSNL---GK---TLTYGELYKLS 59
Query: 123 LKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAGIVPV 175
A L + LK GDRIA+ PN + + A +G + AG++ V
Sbjct: 60 GAFAAWL-------QQHTDLKPGDRIAVQLPN--VLQYPVAVFGAMRAGLIVV 103
>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase;
Provisional.
Length = 542
Score = 34.3 bits (79), Expect = 0.64
Identities = 29/121 (23%), Positives = 41/121 (33%), Gaps = 20/121 (16%)
Query: 57 APKPEGGVMTPAPGESLVVPSGLPRNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYG 116
G+ A LP L +RY T TY
Sbjct: 1 GEPLGAGLAARAVDPLPPSERTLPAMLARQAERYPDRPLLVFGGTRW----------TYA 50
Query: 117 KLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAGIVPVP 176
+ + A+ L + + +K GDR+AL+ N I FL F GC + G + VP
Sbjct: 51 EAARAAAAAAHAL--------AAAGVKRGDRVALMCGNR--IEFLDVFLGCAWLGAIAVP 100
Query: 177 I 177
I
Sbjct: 101 I 101
Score = 34.0 bits (78), Expect = 0.88
Identities = 49/195 (25%), Positives = 72/195 (36%), Gaps = 26/195 (13%)
Query: 1172 RTSPA----GVAGAPVPPGVSSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHV 1227
RT PA P P + TR T ++ + A L A + GD V
Sbjct: 21 RTLPAMLARQAERYPDRPLLVFGGTR-----WTYAEAARAAAAAAHALAA-AGVKRGDRV 74
Query: 1228 ALIFPPGIDLICAFYGCLYVGAVPVTIRPPH--PQNLQTTLPTVRMIVDVSKSVLVLSNQ 1285
AL+ I+ + F GC ++GA+ V I PQ L+ L + V ++ L+ + +
Sbjct: 75 ALMCGNRIEFLDVFLGCAWLGAIAVPINTALRGPQ-LEHILRNSGARLLVVEAALLAALE 133
Query: 1286 NVIKLLKSKEASNVVD---IKSWPTILDTDDMPKKKLAALYRAPTA-----EMLAYLDFS 1337
A ++D S P T +P AP A + A L S
Sbjct: 134 AADPGDLPLPAVWLLDAPASVSVPAGWSTAPLP----PLDAPAPAAAVQPGDTAAILYTS 189
Query: 1338 VSTTGMLAGIKMSHA 1352
TTG G+ HA
Sbjct: 190 -GTTGPSKGVCCPHA 203
Score = 32.8 bits (75), Expect = 2.1
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
Query: 777 ISEILKWRAASTSEHVIFTLLNSKGSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVA 836
+ +L +A + + T ++ + A L A + GD VA
Sbjct: 23 LPAMLARQAERYPDRPLLV------FGGTRWTYAEAARAAAAAAHALAA-AGVKRGDRVA 75
Query: 837 LIFPPGIDLICAFYGCLYVGAVPVTI 862
L+ I+ + F GC ++GA+ V I
Sbjct: 76 LMCGNRIEFLDVFLGCAWLGAIAVPI 101
>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed.
Length = 452
Score = 34.2 bits (79), Expect = 0.64
Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 17/80 (21%)
Query: 1543 SGKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVT 1602
SG++LP ++ I +T G I +Q+ A GY+ D T
Sbjct: 285 SGQVLPHAQITIPANQT---------GNITIQAQSLALGYYPQILDSQGI-------FET 328
Query: 1603 GNTGELYARTGYLGFLRRTS 1622
+ G L GYL L R S
Sbjct: 329 DDLGYL-DAQGYLHILGRNS 347
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA
synthetase like family (ACS). This family is most
similar to acetyl-CoA synthetase. Acetyl-CoA synthetase
(ACS) catalyzes the formation of acetyl-CoA from acetate,
CoA, and ATP. Synthesis of acetyl-CoA is carried out in a
two-step reaction. In the first step, the enzyme
catalyzes the synthesis of acetyl-AMP intermediate from
acetate and ATP. In the second step, acetyl-AMP reacts
with CoA to produce acetyl-CoA. This enzyme is only
present in bacteria.
Length = 443
Score = 34.3 bits (79), Expect = 0.69
Identities = 27/112 (24%), Positives = 39/112 (34%), Gaps = 19/112 (16%)
Query: 1321 ALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPY 1380
LY E A L F+ TTG G+ H AV + + + +L P DP
Sbjct: 81 ELYERTDPEDPALLHFTSGTTGKPKGVLHVHRAVVAHYATARYVLDLRPDDVYWCTADP- 139
Query: 1381 CGLGFALWVLSSVYSGHHSILIPPS--------EVEVNPALWLSAVSQYRVR 1424
G WV + Y I+ P E E + W + + +V
Sbjct: 140 -G-----WVTGTSY----GIIAPLLNGVTLVVDEGEFDAERWYGILEEEKVT 181
Score = 33.5 bits (77), Expect = 1.1
Identities = 36/144 (25%), Positives = 53/144 (36%), Gaps = 40/144 (27%)
Query: 1544 GKLLPGVKVIIANPETKG---QCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARL 1600
G+ LPG++ + + G G +GE+ ++ P S + G+E YA F
Sbjct: 263 GRPLPGIEAAVIERDGDGLTPVTGPGQVGELALK-PGWPSMFRGYLGNEERYASSF---- 317
Query: 1601 VTG--NTGELYAR--TGYLGFLRRTSPAGVAGAPVPPGVSKLHDAVFVVGALDETIMLRG 1656
V G TG+L R GY F VG D+ I G
Sbjct: 318 VDGWYLTGDLAYRDEDGYFWF---------------------------VGRADDVIKTAG 350
Query: 1657 MRYHPIDIENSVMRAHKKIAECAV 1680
P ++E S + H +AE V
Sbjct: 351 HLVGPFEVE-SALMEHPAVAEAGV 373
>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated.
Length = 540
Score = 34.2 bits (78), Expect = 0.71
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 18/114 (15%)
Query: 1544 GKLLPGVKVIIA-----NPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSA 1598
G+ PGV V +A P G + G +W++SP N GY++ E +
Sbjct: 345 GRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWN----NPERTAEV-- 398
Query: 1599 RLVTG--NTGELYAR--TGYLGFLRRTSPAGVAGAP--VPPGVSKLHDAVFVVG 1646
L+ G NTG+L R G+ R+S + G P V ++ + V V
Sbjct: 399 -LIDGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVR 451
>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional.
Length = 542
Score = 34.0 bits (78), Expect = 0.74
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 1186 GVSSVDTRSAAQLL---TCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFY 1242
G V TRS + T +Q+H RA +V + L+R I GD VA I + A+Y
Sbjct: 24 GNREVVTRSVEGPIVRTTYAQIHDRALKV-SQALDRDGIKLGDRVATIAWNTWRHLEAWY 82
Query: 1243 GCLYVGAVPVTIRP 1256
G + +GA+ T+ P
Sbjct: 83 GIMGIGAICHTVNP 96
Score = 33.6 bits (77), Expect = 1.1
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 808 TCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 864
T +Q+H RA +V + L+R I GD VA I + A+YG + +GA+ T+ P
Sbjct: 41 TYAQIHDRALKV-SQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTVNP 96
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual
roles as fatty acid transporters and its activation
enzymes. Fatty acid transport protein (FATP) transports
long-chain or very-long-chain fatty acids across the
plasma membrane. FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. At least
five copies of FATPs are identified in mammalian cells.
This family also includes prokaryotic FATPs. FATPs are
the key players in the trafficking of exogenous fatty
acids into the cell and in intracellular fatty acid
homeostasis.
Length = 444
Score = 33.8 bits (78), Expect = 0.81
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 805 QLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 864
+ L+ ++ + A R L + GD VAL+ + + A+ +GAV I
Sbjct: 2 RRLSYAEFNAWANRYAHALRALG-VKKGDVVALLMENRPEYLLAWLALAKLGAVAALINT 60
Score = 33.8 bits (78), Expect = 0.81
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 1197 QLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 1256
+ L+ ++ + A R L + GD VAL+ + + A+ +GAV I
Sbjct: 2 RRLSYAEFNAWANRYAHALRALG-VKKGDVVALLMENRPEYLLAWLALAKLGAVAALINT 60
>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated.
Length = 542
Score = 34.0 bits (78), Expect = 0.85
Identities = 71/295 (24%), Positives = 108/295 (36%), Gaps = 77/295 (26%)
Query: 109 LSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCI 168
L T T+ +L R +A L + + GDR+ ++ N F+ +
Sbjct: 39 LGNTTTWRELDDRVAALAGALSRRGVGF--------GDRVLILMLNRT--EFVESVLAAN 88
Query: 169 FAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWP 228
G + VP+ LT +I FL+ C V +T A L + TA ++V P
Sbjct: 89 MLGAIAVPVNFRLT-----PPEIAFLVSDCGAHVVVTEAA-LAPV-ATAVRDIV-----P 136
Query: 229 KLTWFVT-------------EHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVT 275
L+ V + LA+ AP + +D+PA I YT+ G G
Sbjct: 137 LLSTVVVAGGSSDDSVLGYEDLLAEAGPAHAPVD-IPNDSPALIMYTSGTTGRPKG---- 191
Query: 276 RAAMLSHCRALTQA--CHYTEGENMVCVLDFKRETG-----LWH-----SVLTSVLNGMH 323
A+L+H QA C T G D + G L+H S+L +L G
Sbjct: 192 --AVLTHANLTGQAMTCLRTNG------ADINSDVGFVGVPLFHIAGIGSMLPGLLLGAP 243
Query: 324 AV------YIPYALMKV-----------NPASWMQMITKYRASVAVVKSRDLHWG 361
V + P L+ V PA W + + +A + R L WG
Sbjct: 244 TVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRDLALRVLSWG 298
>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP)
including hsFATP2, hsFATP5, and hsFATP6, and similar
proteins. Fatty acid transport proteins (FATP) of this
family transport long-chain or very-long-chain fatty
acids across the plasma membrane. At least five copies
of FATPs are identified in mammalian cells. This family
includes hsFATP2, hsFATP5, and hsFATP6, and similar
proteins. Each FATP has unique patterns of tissue
distribution. These FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. The hsFATP
proteins exist in two splice variants; the b variant,
lacking exon 3, has no acyl-CoA synthetase activity.
FATPs are key players in the trafficking of exogenous
fatty acids into the cell and in intracellular fatty
acid homeostasis.
Length = 535
Score = 33.5 bits (77), Expect = 1.0
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 804 AQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIR 863
+ +T +++ KR+ +V LL A + GD VAL+ + + G +G P
Sbjct: 1 GETVTYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLG-CPTAFL 59
Query: 864 PPH 866
+
Sbjct: 60 NTN 62
Score = 33.5 bits (77), Expect = 1.0
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 1196 AQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIR 1255
+ +T +++ KR+ +V LL A + GD VAL+ + + G +G P
Sbjct: 1 GETVTYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLG-CPTAFL 59
Query: 1256 PPH 1258
+
Sbjct: 60 NTN 62
Score = 33.5 bits (77), Expect = 1.1
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 907 AQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGC--LCCPS 960
+ +T +++ KR+ +V LL A + GD VAL+ + + G L CP+
Sbjct: 1 GETVTYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPT 56
Score = 30.4 bits (69), Expect = 8.9
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 112 TLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAG 171
T+TY ++ RS +VA LL + + LK GD +AL+ N+P FL + G G
Sbjct: 3 TVTYAEVDKRSNQVARALL-------AHAGLKPGDTVALLLG-NEP-AFLWIWLGLAKLG 53
Query: 172 IV 173
Sbjct: 54 CP 55
>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 440
Score = 33.6 bits (77), Expect = 1.1
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 807 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTI 862
L+ ++L +++ RV LL + GD VA + P +L+ A VGA+ V +
Sbjct: 1 LSYAELREQSARVANLL-ADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPL 55
Score = 33.6 bits (77), Expect = 1.1
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTI 1254
L+ ++L +++ RV LL + GD VA + P +L+ A VGA+ V +
Sbjct: 1 LSYAELREQSARVANLL-ADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPL 55
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated.
Length = 496
Score = 33.3 bits (76), Expect = 1.2
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 805 QLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVG--AVPVTI 862
+ +T QLH+ +V A L+ + G+ +A++ ++ I + V AVP+ I
Sbjct: 26 EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNI 85
Query: 863 R 863
R
Sbjct: 86 R 86
Score = 33.3 bits (76), Expect = 1.2
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 1197 QLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVG--AVPVTI 1254
+ +T QLH+ +V A L+ + G+ +A++ ++ I + V AVP+ I
Sbjct: 26 EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNI 85
Query: 1255 R 1255
R
Sbjct: 86 R 86
Score = 31.0 bits (70), Expect = 6.0
Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 12/88 (13%)
Query: 908 QLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFY-----GCLCCPSN- 961
+ +T QLH+ +V A L+ + G+ +A++ ++ I + C+ P N
Sbjct: 26 EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNI 85
Query: 962 HPTPSPSESSNHATHRQNDSGRQQICSS 989
T N + DSG +
Sbjct: 86 RLTE------NELIFQLKDSGTTVLFVE 107
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 33.7 bits (78), Expect = 1.2
Identities = 64/315 (20%), Positives = 113/315 (35%), Gaps = 76/315 (24%)
Query: 102 VLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFL 161
V D G L+YGK L+ +L L + + R LK + + ++ P + L
Sbjct: 634 VADSTGG---ELSYGKALTGAL-----ALARLLKRE----LKDEENVGILLPPSVA-GAL 680
Query: 162 CAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEV 221
+ AG VPV + A + + I+ +TS L+ L G
Sbjct: 681 AN-LALLLAGKVPVNLNY-----TASEAALKSAIEQAQIKTVITSRKFLEKLK--NKGFD 732
Query: 222 VAFKGWPKLTWFVTEHLAKTP--------------------KDWAPQPRLTDDTPAYIEY 261
+ K+ + E L K DDT A I +
Sbjct: 733 LELPENVKVIYL--EDLKAKISKVDKLTALLAARLLPARLLKRLYGPTFKPDDT-ATIIF 789
Query: 262 TTDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFKRETGLWHSVLTSVLNG 321
++ +G GV ++ +LS+ ++ + + ++ L F GL ++ +L G
Sbjct: 790 SSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFGLTVTLWLPLLEG 849
Query: 322 MHAVYIPYALMKVNP---ASWMQMITKYRASVAVVKSRDLHWGLLAT-----------KD 367
+ VY P +P +++ K+RA++ LL T K
Sbjct: 850 IKVVYHP------DPTDALGIAKLVAKHRATI-----------LLGTPTFLRLYLRNKKL 892
Query: 368 HKDISLSSLRLLLVG 382
H + +SLRL++ G
Sbjct: 893 HPLM-FASLRLVVAG 906
>gnl|CDD|238951 cd01993, Alpha_ANH_like_II, This is a subfamily of Adenine
nucleotide alpha hydrolases superfamily.Adeninosine
nucleotide alpha hydrolases superfamily includes N type
ATP PPases and ATP sulphurylases. It forms a
apha/beta/apha fold which binds to Adenosine group.
This subfamily of proteins is predicted to bind ATP.
This domainhas a strongly conserved motif SGGKD at the
N terminus.
Length = 185
Score = 32.6 bits (75), Expect = 1.2
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 14/61 (22%)
Query: 561 VTGRKHNADDIIATVLAVEPMKFIYRGRIAVFS---IRVLRDERICVIAEQRP--DCSEE 615
TG HN DD T+L M + G + + I L + + I RP E+
Sbjct: 111 ATG--HNLDDEAETLL----MNLLRGGILRLMRPGPILYLDEGDVTRI---RPLVYVREK 161
Query: 616 E 616
E
Sbjct: 162 E 162
>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated.
Length = 414
Score = 33.5 bits (77), Expect = 1.2
Identities = 43/221 (19%), Positives = 73/221 (33%), Gaps = 50/221 (22%)
Query: 845 LICAFYGCLYVGAVPVTIRPPHPQNLQTTLPTHQFISEILKWRAASTSEHVIFTLLNSKG 904
LIC L G+ PV I +P+ F IL+ +T +H+++
Sbjct: 157 LICGVLAALTRGSKPVIITNKNPK----------FALNILR----NTPQHILY------A 196
Query: 905 SAAQLLTCSQLHKRAERV------GALLLER--AKI-NTGDHVALIFPPGIDLICAFYGC 955
L +L + G L E K+ ++ YGC
Sbjct: 197 VPLMLHILGRLLPGTFQFHAVMTSGTPLPEAWFYKLRERTTYM-----------MQQYGC 245
Query: 956 L---CCPSNHPTPSPSESSNHATHRQNDSGRQQICSSLIQPKC-DQTSQVEKL----HDA 1007
C S + N H +G + I K D+ + L
Sbjct: 246 SEAGCVSICPDMKSHLDLGNPLPHVSVSAGSDENAPEEIVVKMGDKEIFTKDLGYKSERG 305
Query: 1008 VFV-VGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVF 1047
+G +D+ I + G+ +PI++E+ VM + E V+
Sbjct: 306 TLHFMGRMDDVINVSGLNVYPIEVED-VMLRLPGVQEAVVY 345
Score = 31.2 bits (71), Expect = 6.4
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 1645 VGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVF 1681
+G +D+ I + G+ +PI++E+ VM + E V+
Sbjct: 310 MGRMDDVINVSGLNVYPIEVED-VMLRLPGVQEAVVY 345
>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional.
Length = 358
Score = 33.1 bits (76), Expect = 1.3
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 998 TSQVEKLHDAVF-VVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVF 1047
T + L D V V+G D+ I G+ P +E ++ H +A+CAVF
Sbjct: 238 TDDLGALDDGVLTVLGRADDAISTGGLTVLPQVVEAALAT-HPAVADCAVF 287
Score = 32.7 bits (75), Expect = 2.0
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 13/63 (20%)
Query: 1620 RTSPAGVAGAPVPPGVSKLHDAVF-VVGALDETIMLRGMRYHPIDIENSVMRAHKKIAEC 1678
RT G L D V V+G D+ I G+ P +E ++ H +A+C
Sbjct: 237 RTDDLGA-----------LDDGVLTVLGRADDAISTGGLTVLPQVVEAALAT-HPAVADC 284
Query: 1679 AVF 1681
AVF
Sbjct: 285 AVF 287
>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 562
Score = 33.3 bits (76), Expect = 1.4
Identities = 49/202 (24%), Positives = 84/202 (41%), Gaps = 46/202 (22%)
Query: 109 LSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCI 168
L +TL+Y +L S A L + L GDRIA+ PN + + A +G +
Sbjct: 46 LGVTLSYAELERHSAAFAAYL-------QQHTDLVPGDRIAVQMPN--VLQYPIAVFGAL 96
Query: 169 FAGIVPVPIEVPLTRR-------DAGSQQIGFL-LGSCDIQVALTSDACLKGLPKTAAGE 220
AG++ V T R D+G++ + +L + +Q L D ++ L + G+
Sbjct: 97 RAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVL-PDTGIEYLIEAKMGD 155
Query: 221 VV-AFKGWPKLTWFVTEHLAKTPKDW------------------APQP-RLTDDTPAYIE 260
++ A KGW L V + + K + + +P + D A ++
Sbjct: 156 LLPAAKGW--LVNTVVDKVKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQ 213
Query: 261 YTTDRDGSVMGVTVTRAAMLSH 282
YT G G + + AML+H
Sbjct: 214 YT----GGTTG--LAKGAMLTH 229
>gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde
dehydrogenase. Members of this protein family are
L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31),
product of the LYS2 gene. It is also called
alpha-aminoadipate reductase. In fungi, lysine is
synthesized via aminoadipate. Currently, all members of
this family are fungal.
Length = 1389
Score = 33.1 bits (76), Expect = 1.6
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 431 GVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQD---CGQVMPGCIMTVVKMDSPSYLC 487
G T R V SY + +S L+D G+ M + VV + + C
Sbjct: 563 GTTETQRAV------SYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNRNDRTQTC 616
Query: 488 KTDEVGEICVASTGTGSQYWGLPGLSNTTF 517
EVGEI V + G Y GLP L+ F
Sbjct: 617 GVGEVGEIYVRAGGLAEGYLGLPELNAEKF 646
Score = 30.8 bits (70), Expect = 8.4
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 1188 SSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYV 1247
S +D S + T Q++ A + A L + I GD V + G+DL+ A G L
Sbjct: 260 SFLDPSSKTRSFTYKQIN-EASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGVLKA 318
Query: 1248 GAVPVTIRPPHPQNLQT 1264
GA I P +P QT
Sbjct: 319 GATFSVIDPAYPPARQT 335
>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional.
Length = 537
Score = 32.8 bits (75), Expect = 2.0
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 1602 TGNTGELYARTGYL--GFLRRTSPAGVAGAPVPPGVSKLHDA--VFVVGALDETIMLRGM 1657
TG G ++ R G+ ++ G V L + +FVVG DE I+ G
Sbjct: 388 TGEVGTIFVRNDTQFDGYTSGSTKDFHDGFMASGDVGYLDENGRLFVVGRDDEMIVSGGE 447
Query: 1658 RYHPIDIENSVMRAHKKIAECAV 1680
+PI++E ++ H +AE AV
Sbjct: 448 NVYPIEVEKTLA-THPDVAEAAV 469
Score = 31.3 bits (71), Expect = 4.9
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 1009 FVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAV 1046
FVVG DE I+ G +PI++E ++ H +AE AV
Sbjct: 433 FVVGRDDEMIVSGGENVYPIEVEKTLA-THPDVAEAAV 469
>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL)
similar to Fum10p of Gibberella moniliformis. FACL
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, followed by the formation of a fatty
acyl-CoA. This is a required step before free fatty acids
can participate in most catabolic and anabolic reactions.
Fum10p is a fatty acid CoA ligase involved in the
synthesis of fumonisin, a polyketide mycotoxin, in
Gibberella moniliformis.
Length = 345
Score = 32.6 bits (75), Expect = 2.0
Identities = 32/136 (23%), Positives = 52/136 (38%), Gaps = 38/136 (27%)
Query: 1549 GVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGEL 1608
GV+V I + + + GEI ++ P+ +GY + + F G
Sbjct: 179 GVEVAILDDDGRPLPPGQE-GEIVIRGPNVTAGY---LNNPEANREAF----RDG----- 225
Query: 1609 YARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDA---VFVVGALDETIMLRGMRYHPIDIE 1665
+ RTG LG+L D +F+ G + E I G + P ++E
Sbjct: 226 WFRTGDLGYL---------------------DEDGYLFLTGRIKELINRGGEKISPREVE 264
Query: 1666 NSVMRAHKKIAECAVF 1681
V+ H +AE VF
Sbjct: 265 E-VLLRHPAVAEAVVF 279
>gnl|CDD|211964 TIGR04241, adenoE3CR1rpt, mastadenovirus E3 CR1-alpha-1. This
domain occurs only in the adenovirus E3 region
CR1-alpha-1 protein. It may occur once, twice, or three
times.
Length = 81
Score = 30.0 bits (68), Expect = 2.1
Identities = 14/50 (28%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 658 SECKRRFLEGNLHPANVLLCPHTCVTNLPKPREIHSGN--CLAGQCKRRF 705
S C +G L P N+ L L G C AG C+ F
Sbjct: 29 SSCATYDNDGVLLPNNLSLTFSASSQKLTLFPPFVPGTYTCQAGPCQHTF 78
>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed.
Length = 547
Score = 32.4 bits (74), Expect = 2.2
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 1190 VDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGA 1249
VD A+ T S L A R+ LL + I GD VA P + + CL VGA
Sbjct: 43 VDNHGAS--YTYSALDHAASRLANWLLAKG-IEPGDRVAFQLPGWCEFTIIYLACLKVGA 99
Query: 1250 VPVTIRP 1256
V V + P
Sbjct: 100 VSVPLLP 106
Score = 32.0 bits (73), Expect = 2.9
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 808 TCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 864
T S L A R+ LL + I GD VA P + + CL VGAV V + P
Sbjct: 51 TYSALDHAASRLANWLLAKG-IEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLP 106
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase.
Members of this protein family are
cyclohexanecarboxylate-CoA ligase. This enzyme prepares
the aliphatic ring compound, cyclohexanecarboxylate, for
dehydrogenation and then degradation by a pathway also
used in benzoyl-CoA degradation in Rhodopseudomonas
palustris.
Length = 538
Score = 32.2 bits (73), Expect = 2.6
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 1176 AGVAGAPVPPGVSSV-DTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPG 1234
A VA P P +++ D A + + +L R +R+ A+ L R + GD V+ P
Sbjct: 30 AAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRI-AVGLARLGVGRGDVVSFQLPNR 88
Query: 1235 IDLICAFYGCLYVGAVPVTIRP 1256
+ + C +GAV + P
Sbjct: 89 WEFTALYLACARIGAVLNPLMP 110
>gnl|CDD|215159 PLN02285, PLN02285, methionyl-tRNA formyltransferase.
Length = 334
Score = 32.0 bits (73), Expect = 2.7
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 40 EDDDIELEIAANPKDPNAPKPEGGVMTPAPGESLVVPSGLPRNLEAAIQRYGSATYKAPV 99
+ D E+AA P A + G + P+P L + G P +L ++ G + + +
Sbjct: 30 QAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDLIFTPEKAGEEDFLSAL 89
Query: 100 ATVLDPNGKLSITLTYGKLLSRS 122
L P+ L IT YG +L +
Sbjct: 90 RE-LQPD--LCITAAYGNILPQK 109
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional.
Length = 558
Score = 32.1 bits (73), Expect = 3.0
Identities = 62/302 (20%), Positives = 109/302 (36%), Gaps = 64/302 (21%)
Query: 113 LTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAGI 172
T+ +L ++A LL + GDR+ + PN +L + G
Sbjct: 46 YTWRQLADAVDRLARGLLALGVQP--------GDRVGIWAPNC--AEWLLTQFATARIGA 95
Query: 173 VPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDA------------CLKGLPKTAAGE 220
+ V I P R ++ + LG ++ + +DA L GL + G
Sbjct: 96 ILVNIN-PAYRA----SELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGA 150
Query: 221 VVAFKGWPKLTWFVTEHLAKTPK--DW----------------APQPRLTDDTPAYIEYT 262
+ + P+L V+ A P W Q L D P I+YT
Sbjct: 151 LACER-LPELRGVVSLAPAPPPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYT 209
Query: 263 TDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFKRETGLWHSVLTSVLNGM 322
+ G G T++ +L++ + ++ TE + + + G+ + L + G
Sbjct: 210 SGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGA 269
Query: 323 HAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGL----LATKDHKDIS---LSS 375
VY A +P + +Q + + R + L+ G+ +A DH LSS
Sbjct: 270 CLVYPNEAF---DPLATLQAVEEERCTA-------LY-GVPTMFIAELDHPQRGNFDLSS 318
Query: 376 LR 377
LR
Sbjct: 319 LR 320
>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA. PimA, a member of
a large family of acyl-CoA ligases, is found in a
characteristic operon pimFABCDE for the metabolism of
pimelate and related compounds. It is found, so far, in
Bradyrhizobium japonicum and several strains of
Rhodopseudomonas palustris. PimA from R. palustris was
shown to be active as a CoA ligase for C(7) to C(14)
dicarboxylates and fatty acids.
Length = 541
Score = 32.2 bits (73), Expect = 3.2
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 467 GQVMPGCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTF 517
G ++PG + VV +D P+ + EVGE+ + YW P S F
Sbjct: 368 GLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAF 418
>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated.
Length = 534
Score = 32.2 bits (73), Expect = 3.2
Identities = 47/197 (23%), Positives = 72/197 (36%), Gaps = 18/197 (9%)
Query: 140 SSLKSGDRIALVYPNNDPINFLCAFYGCIFAGIVPVPIE--VPLTRRDAGSQQIGF---- 193
S L GDR+AL +N F+ A A +V VP++ +P+ + SQ G
Sbjct: 63 SGLLPGDRVALRMGSN--AEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVL 120
Query: 194 --LLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKLTWFVTEHLAKTPKDWAPQPRL 251
G D ++ + P T + L+ + TP P+
Sbjct: 121 IDADGPHD-----RAEPTTRWWPLTVNVGGDSGPSGGTLSVHLDAATEPTPATSTPEGLR 175
Query: 252 TDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFKRETGLW 311
DD A I +T G V T A + S RA+ + + V V+ GL
Sbjct: 176 PDD--AMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLI 233
Query: 312 HSVLTSVLNGMHAVYIP 328
+ L + L AV +P
Sbjct: 234 -AALLATLASGGAVLLP 249
>gnl|CDD|220592 pfam10134, RPA, Replication initiator protein A. Members of this
family of bacterial proteins are single-stranded DNA
binding proteins that are involved in DNA replication,
repair and recombination.
Length = 228
Score = 31.4 bits (72), Expect = 3.3
Identities = 31/161 (19%), Positives = 50/161 (31%), Gaps = 54/161 (33%)
Query: 28 KRPKRRPLPEFYEDDDIELEIAANP---------KD------------PNAPKPEGGVMT 66
K+P R + YE D+++ + +P KD NA +P
Sbjct: 16 KKPDTRVIE--YESGDVKVTVEPSPEVGMATIWDKDILIYAISQLVEARNAGRPVSRTFR 73
Query: 67 PAPGESLVV----PSGLP-RNLEAAIQRYGSATYKAPVAT-----------------VLD 104
+ L G L+AA+ R T + + T V
Sbjct: 74 FTAYDLLKFTRRDTGGRAYERLKAALDRLQGTTIETNIRTGGKRRTRGFGLIDEWEVVTR 133
Query: 105 PNGKLS---ITL---TYGKLLSRSLKV---AYTLLTKPINR 136
G++ ITL Y +L+ + Y L K + R
Sbjct: 134 TTGRMLGVEITLSDWLYRAVLNALVLTIHPDYFRLRKGLER 174
>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases. Protein Kinases
(PKs), catalytic (c) domain. PKs catalyze the transfer
of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The PK family is part of a larger
superfamily that includes the catalytic domains of RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, phosphoinositide 3-kinase (PI3K), and
actin-fragmin kinase. PKs make up a large family of
serine/threonine kinases, protein tyrosine kinases
(PTKs), and dual-specificity PKs that phosphorylate both
serine/threonine and tyrosine residues of target
proteins. Majority of protein phosphorylation, about
95%, occurs on serine residues while only 1% occurs on
tyrosine residues. Protein phosphorylation is a
mechanism by which a wide variety of cellular proteins,
such as enzymes and membrane channels, are reversibly
regulated in response to certain stimuli. PKs often
function as components of signal transduction pathways
in which one kinase activates a second kinase, which in
turn, may act on other kinases; this sequential action
transmits a signal from the cell surface to target
proteins, which results in cellular responses. The PK
family is one of the largest known protein families with
more than 100 homologous yeast enzymes and 550 human
proteins. A fraction of PK family members are
pseudokinases that lack crucial residues for catalytic
activity. The mutiplicity of kinases allows for specific
regulation according to substrate, tissue distribution,
and cellular localization. PKs regulate many cellular
processes including proliferation, division,
differentiation, motility, survival, metabolism,
cell-cycle progression, cytoskeletal rearrangement,
immunity, and neuronal functions. Many kinases are
implicated in the development of various human diseases
including different types of cancer.
Length = 215
Score = 31.4 bits (72), Expect = 3.4
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 28/73 (38%)
Query: 604 VIAEQRPDCSEEESFQWMSRVLQAVDSIHQVGLYCLALVPPNYLPKTPLGGIHLSECKRR 663
++ E SE+E + + ++L+ ++ +H G+ IH
Sbjct: 81 LLKENEGKLSEDEILRILLQILEGLEYLHSNGI------------------IH------- 115
Query: 664 FLEGNLHPANVLL 676
+L P N+LL
Sbjct: 116 ---RDLKPENILL 125
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated.
Length = 632
Score = 31.8 bits (73), Expect = 3.6
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 20/107 (18%)
Query: 467 GQVMPGCIMTVVKMD-SPSYL--CKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLL 523
G +P + VV +D + YL C DEVG +C+A S Y +
Sbjct: 389 GLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGY------------LEA-- 434
Query: 524 ADGTAL-SQDTYTRSGLLGFLGPGGLVFVCGSRDGLMTVTGRKHNAD 569
A L +D + +G LG + G ++ G L+ G HN D
Sbjct: 435 AHNKGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGG--HNID 479
>gnl|CDD|226524 COG4037, COG4037, Predicted membrane protein [Function unknown].
Length = 163
Score = 30.6 bits (69), Expect = 3.8
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 20/78 (25%)
Query: 14 WKVSAKIQQLLNTLKRPKRRP----------------LPEFYEDDDIE----LEIAANPK 53
V+AK+ ++LN L+RP+ P P + + ++ K
Sbjct: 1 MSVTAKLGRILNALRRPESMPRVFCLLLALLALLGLLCPHSLNPEQLYPRPAPQVQMKAK 60
Query: 54 DPNAPKPEGGVMTPAPGE 71
DP AP GGV +PG
Sbjct: 61 DPLAPYDRGGVPLESPGV 78
>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase
(LC-FACS), including Marinobacter hydrocarbonoclasticus
isoprenoid Coenzyme A synthetase. The members of this
family are bacterial long-chain fatty acid CoA
synthetase. Marinobacter hydrocarbonoclasticus isoprenoid
Coenzyme A synthetase in this family is involved in the
synthesis of isoprenoid wax ester storage compounds when
grown on phytol as the sole carbon source. LC-FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
Free fatty acids must be "activated" to their CoA
thioesters before participating in most catabolic and
anabolic reactions.
Length = 504
Score = 31.5 bits (72), Expect = 4.8
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 1296 ASNVVDIKSWPTILDTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVT 1355
S + D W +L + + + P E LA + ++ TTG G+ +S A
Sbjct: 109 YSTLKDHYKWDDLLAATEPLQGR-----PLPEPEDLATIVYTSGTTGQPKGVMLSFGAFA 163
Query: 1356 SLCRSM 1361
+
Sbjct: 164 FAAQGT 169
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 483
Score = 31.5 bits (72), Expect = 5.1
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 781 LKWRAASTSEHVIFTLLNSKGSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFP 840
LK RA T + K +T +LH+ V A L + GD VAL+
Sbjct: 8 LKQRAFLTPDRTAIEFEEKK------VTFMELHEAVVSV-AGKLAALGVKKGDRVALLMK 60
Query: 841 PGIDLICAFYGCLYVGAVPV 860
G+++I + +GAV V
Sbjct: 61 NGMEMILVIHALQQLGAVAV 80
>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase
(MACS or ACSM). MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes. MACS enzymes are localized to
mitochondria. Two murine MACS family proteins are found
in liver and kidney. In rodents, a MACS member is
detected particularly in the olfactory epithelium and is
called O-MACS. O-MACS demonstrates substrate preference
for the fatty acid lengths of C6-C12.
Length = 530
Score = 30.9 bits (70), Expect = 6.4
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 117 KLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAGIVPVP 176
+L S S K A +L+ L+ GDR+A++ P P +L CI G+V +P
Sbjct: 46 ELGSLSRKAA-NVLSGACG------LQRGDRVAVILPRV-PEWWLVNV-ACIRTGLVFIP 96
Query: 177 IEVPLTRRD 185
+ LT +D
Sbjct: 97 GTIQLTAKD 105
>gnl|CDD|206474 pfam14306, PUA_2, PUA-like domain. This PUA like domain is found
at the N-terminus of ATP-sulfurylase enzymes.
Length = 159
Score = 29.8 bits (68), Expect = 6.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 141 SLKSGDRIALVYPNNDPI 158
LK GDR+AL P +P+
Sbjct: 91 GLKEGDRVALRDPEGEPL 108
>gnl|CDD|173667 cd05576, STKc_RPK118_like, Catalytic domain of the Protein
Serine/Threonine Kinases, RPK118 and similar proteins.
Serine/Threonine Kinases (STKs), RPK118-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The RPK118-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily show similarity to
human RPK118, which contains an N-terminal Phox homology
(PX) domain, a Microtubule Interacting and Trafficking
(MIT) domain, and a kinase domain containing a long
insert. Also included in the family is human RPK60 (or
ribosomal protein S6 kinase-like 1), which also contains
MIT and kinase domains but lacks a PX domain. RPK118
binds sphingosine kinase, a key enzyme in the synthesis
of sphingosine 1-phosphate (SPP), a lipid messenger
involved in many cellular events. RPK118 may be involved
in transmitting SPP-mediated signaling. RPK118 also
binds the antioxidant peroxiredoxin-3 (PRDX3). RPK118
may be involved in the transport of PRDX3 from the
cytoplasm to its site of function in the mitochondria.
Length = 237
Score = 30.6 bits (69), Expect = 6.6
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 614 EEESFQWMSRVLQAVDSIHQVGLYCLALVPPNYL 647
EE +W + ++ A+D++H+ G+ C L P N L
Sbjct: 84 EECVKRWAAEMVVALDALHREGIVCRDLNPNNIL 117
>gnl|CDD|227643 COG5338, COG5338, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 468
Score = 31.0 bits (70), Expect = 7.4
Identities = 21/72 (29%), Positives = 26/72 (36%), Gaps = 8/72 (11%)
Query: 1131 ASGYFSLY-GDESEYAQQFS----ARLVTGNTGELYARTGYLGFLR--RTSPAGVAGAPV 1183
G F S Q + RL GN A+ GY FLR TSP + GA
Sbjct: 153 GGGNFIRNISGGSVEEPQANIEANLRLDLGNQTTANAKAGY-EFLREPATSPNAIVGAGA 211
Query: 1184 PPGVSSVDTRSA 1195
P V + +
Sbjct: 212 QPLVDTFSGSAG 223
>gnl|CDD|173310 PTZ00005, PTZ00005, phosphoglycerate kinase; Provisional.
Length = 417
Score = 30.8 bits (70), Expect = 8.2
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 1523 RNDRVSLVERGSPHSLCLLESGKLLPGV 1550
++VS V G SL LLE GK LPGV
Sbjct: 385 AANKVSHVSTGGGASLELLE-GKELPGV 411
>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase
(LC-FACS). The members of this family are eukaryotic
fatty acid CoA synthetases that activate fatty acids with
chain lengths of 12 to 20. LC-FACS catalyzes the
formation of fatty acyl-CoA in a two-step reaction: the
formation of a fatty acyl-AMP molecule as an
intermediate, and the formation of a fatty acyl-CoA. This
is a required step before free fatty acids can
participate in most catabolic and anabolic reactions.
Organisms tend to have multiple isoforms of LC-FACS genes
with multiple splice variants. For example, nine genes
are found in Arabidopsis and six genes are expressed in
mammalian cells.
Length = 539
Score = 30.6 bits (70), Expect = 8.9
Identities = 28/166 (16%), Positives = 59/166 (35%), Gaps = 31/166 (18%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 1258
++ ++ +RA +G+ L + GD + + + I C V V
Sbjct: 6 ISYKEVEERALNIGSGLRALG-LKPGDKIGIFAENRPEWIITEQACFSQSLVIVP----- 59
Query: 1259 PQNLQTTL--PTVRMIVDVSK-SVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDMP 1315
L TL + I++ ++ S++ V S+ + + +
Sbjct: 60 ---LYDTLGEEAIEYILNETEISIVFCDAVKVY---------------SFEELEE---LG 98
Query: 1316 KKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSM 1361
KK P E LA + ++ TTG G+ ++H + + +
Sbjct: 99 KKNKVPPTP-PKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAGI 143
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated.
Length = 600
Score = 30.6 bits (70), Expect = 9.4
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 807 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAV 858
++ ++L+ RA R R + GD VAL+ + + A+ G +GAV
Sbjct: 63 ISYAELNARANRYAHWAAARG-VGKGDVVALLMENRPEYLAAWLGLAKLGAV 113
Score = 30.6 bits (70), Expect = 9.4
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAV 1250
++ ++L+ RA R R + GD VAL+ + + A+ G +GAV
Sbjct: 63 ISYAELNARANRYAHWAAARG-VGKGDVVALLMENRPEYLAAWLGLAKLGAV 113
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated.
Length = 488
Score = 30.5 bits (69), Expect = 9.9
Identities = 37/152 (24%), Positives = 57/152 (37%), Gaps = 34/152 (22%)
Query: 143 KSGDRIALVYPNND---PINFLCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCD 199
G+R+A++ N+ ++F CA G I+ VPL R + S+ LL +
Sbjct: 45 VDGERLAVLARNSVWLVALHFACARVGAIY---------VPLNWRLSASELDA-LLQDAE 94
Query: 200 IQVALTSDACLKGLPKTAAGEVVAFKGWPKLTWFVTEHLAKTPKDWAPQPRLTDDTPAYI 259
++ L DA +V F+ A P A P + + + I
Sbjct: 95 PRLLLGDDA-----VAAGRTDVEDLAA------FIASADALEP---ADTPSIPPERVSLI 140
Query: 260 EYTTDRDGSVMGVTVTRAAMLSHCRALTQACH 291
+T+ G GV MLS R L Q H
Sbjct: 141 LFTSGTSGQPKGV------MLSE-RNLQQTAH 165
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.414
Gapped
Lambda K H
0.267 0.0839 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 89,410,233
Number of extensions: 8926721
Number of successful extensions: 7808
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7544
Number of HSP's successfully gapped: 368
Length of query: 1761
Length of database: 10,937,602
Length adjustment: 111
Effective length of query: 1650
Effective length of database: 6,014,308
Effective search space: 9923608200
Effective search space used: 9923608200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (29.0 bits)