RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14338
(1761 letters)
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl
adenylate, structural genom 2, protein structure
initiative; HET: 1ZZ; 1.85A {Legionella pneumophila
subsp} PDB: 3lnv_A*
Length = 590
Score = 486 bits (1253), Expect = e-155
Identities = 140/572 (24%), Positives = 227/572 (39%), Gaps = 43/572 (7%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 1258
+T QL + A+ + A L GD V L+F PG+ LI AF GCLY G + V I PP
Sbjct: 41 MTYEQLDQHAKAIAATLQAEG-AKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPA 99
Query: 1259 PQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDMPKKK 1318
+ L L + IV SK V+VL + IK + E + P I +
Sbjct: 100 QEKL---LDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIALESIELNRS 156
Query: 1319 LAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLD 1378
+ + + +A+L ++ +T G+ +SH + + + + I L
Sbjct: 157 SSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLP 216
Query: 1379 PYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTK 1438
P+ +G +L+ +Y G +I++ P NP WL +++Y+ + + C K
Sbjct: 217 PHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVK 276
Query: 1439 GLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALGLSPRAVSTSFGCRV 1498
I + K + L T A E R F + F G A +G
Sbjct: 277 R----IREEKKEGLDLSSWVTAFNGA-EPVREETMEHFYQAFKEFGFRKEAFYPCYGLAE 331
Query: 1499 NIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLPGVKVIIANPE 1558
+ G + + ++ RV + SP S L+ SG + VK I +P+
Sbjct: 332 ATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVK--IIDPD 389
Query: 1559 TKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFL 1618
T C +GEIWVQS A GY + E F+ ++ +Y RTG LGFL
Sbjct: 390 TLIPCDFDQVGEIWVQSNSVAKGY---WNQPEETRHAFAGKIKDDERSAIYLRTGDLGFL 446
Query: 1619 RRTSPAGVAGAPVPPGVSKLHDAVFVVGALDETIMLRGMRYHPIDIENSVMRAHKKI--A 1676
+ ++V G + + I++ G ++P DIE S+M +
Sbjct: 447 HE-------------------NELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLG 487
Query: 1677 ECAVFTWTN----LLVVVVELDGNESEALD---LVPLVTNAVLEEHHLIVGVAVVVDPGV 1729
+CA F L V+ E+ + + L + V E H L V V++
Sbjct: 488 KCAAFVIQEEHEYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKA 547
Query: 1730 VPINSRGEKQRMHLRDGFLADQLDPIYVAYNM 1761
+P + G+ +R R L L PI + +
Sbjct: 548 MPHTTSGKIRRNFCRKHLLDKTL-PIVATWQL 578
Score = 289 bits (741), Expect = 2e-84
Identities = 131/615 (21%), Positives = 239/615 (38%), Gaps = 59/615 (9%)
Query: 72 SLVVPSGLPRNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLT 131
SL ++L ++ + T L+ T+TY +L + +A TL
Sbjct: 2 SLKKEYLQCQSLVDVVRLRALHSPNKKSCTFLNKEL--EETMTYEQLDQHAKAIAATLQ- 58
Query: 132 KPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAGIVPVPIEVPLTRRDAGSQQI 191
K GDR+ L++ + + AF GC++AG + VP + ++ +
Sbjct: 59 -------AEGAKPGDRVLLLFAPG--LPLIQAFLGCLYAGCIAVP--IYPPAQEKLLDKA 107
Query: 192 GFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKLTWFVTEHLAKTPKDWAPQPRL 251
++ + + L +K F P E + +
Sbjct: 108 QRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIP---AIALESIELNRSSSWQPTSI 164
Query: 252 TDDTPAYIEYT---TDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFKRET 308
+ A+++YT T GV V+ +L + + + H + + L +
Sbjct: 165 KSNDIAFLQYTSGST---MHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDM 221
Query: 309 GLWHSVLTSVLNGMHAVYI-PYALMKVNPASWMQMITKYRASVA---------VVKSRDL 358
GL +LT + G+ A+ + P++ ++ NP SW++ ITKY+A+++ VK
Sbjct: 222 GLIGCILTPIYGGIQAIMMSPFSFLQ-NPLSWLKHITKYKATISGSPNFAYDYCVKR--- 277
Query: 359 HWGLLATKDHKDISLSSLRLLLVGDGANPWSLSSCDQFLSVFQSKGLRPDAICPCASSSE 418
+ + + + LSS G A P + + F F+ G R +A PC +E
Sbjct: 278 ----IREEKKEGLDLSSWVTAFNG--AEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAE 331
Query: 419 -CLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQVMPGCIMTV 477
L V+ PG + T L+ V +NS S L G + + +
Sbjct: 332 ATLLVTGGTPGSSYKTLT----LAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKI 385
Query: 478 VKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRS 537
+ D+ C D+VGEI V S YW P + F + D Y R+
Sbjct: 386 IDPDT-LIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGK--IKDDER--SAIYLRT 440
Query: 538 GLLGFLGPGGLVFVCGSRDGLMTVTGRKHNADDIIATVLAVEPMKFIYRGRIAVFSIRVL 597
G LGFL L +V G L+ + G+ H DI +++ G+ A F I+
Sbjct: 441 GDLGFLHENEL-YVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLH--HVLGKCAAFVIQEE 497
Query: 598 RDERICVIAEQRPDCSEEESF-QWMSRVLQAVDSIHQVGLYCLALVPPNYLPKTPLGGIH 656
+ ++ V+ E + ++ + + + + V HQ+ ++ + L+P +P T G I
Sbjct: 498 HEYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIR 557
Query: 657 LSECKRRFLEGNLHP 671
+ C++ L+ L
Sbjct: 558 RNFCRKHLLDKTLPI 572
Score = 122 bits (309), Expect = 1e-28
Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 13/140 (9%)
Query: 1008 VFVVGALDETIMLRGMRYHPIDIENSVMRAHKKI--AECAVFTWTN----LLVVVVELDG 1061
++V G + + I++ G ++P DIE S+M + +CA F L V+ E+
Sbjct: 451 LYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHEYKLTVMCEVKN 510
Query: 1062 NESEALD---LVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQL 1118
+ + L + V E H L V V++ +P + G+ +R R L L
Sbjct: 511 RFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDKTL 570
Query: 1119 DPIYIW----VQSPHNASGY 1134
+ W ++ H+ +
Sbjct: 571 PIVATWQLNKIEEGHHHHHH 590
Score = 110 bits (276), Expect = 1e-24
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 772 RKHQFISEILKWRAASTSEHVIFTLLNSKGSAAQLLTCSQLHKRAERVGALLLERAKINT 831
+ Q + ++++ RA + T LN + +T QL + A+ + A L
Sbjct: 8 LQCQSLVDVVRLRALHSPNKKSCTFLNKELEET--MTYEQLDQHAKAIAATLQAEG-AKP 64
Query: 832 GDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPHPQNLQTTL 874
GD V L+F PG+ LI AF GCLY G + V I PP + L
Sbjct: 65 GDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKA 107
Score = 90.8 bits (226), Expect = 1e-18
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 869 NLQTTLPTHQFISEILKWRAASTSEHVIFTLLNSKGSAAQLLTCSQLHKRAERVGALLLE 928
+L+ Q + ++++ RA + T LN + +T QL + A+ + A L
Sbjct: 2 SLKKEYLQCQSLVDVVRLRALHSPNKKSCTFLNKELEET--MTYEQLDQHAKAIAATLQA 59
Query: 929 RAKINTGDHVALIFPPGIDLICAFYGCL 956
GD V L+F PG+ LI AF GCL
Sbjct: 60 EG-AKPGDRVLLLFAPGLPLIQAFLGCL 86
Score = 58.5 bits (142), Expect = 2e-08
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 1123 IWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRR 1172
IWVQS A GY + E F+ ++ +Y RTG LGFL
Sbjct: 402 IWVQSNSVAKGY---WNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHE 448
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme
family,, structural genomics, PSI-2, protein structure
initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB:
3pbk_A*
Length = 576
Score = 254 bits (652), Expect = 5e-73
Identities = 139/624 (22%), Positives = 226/624 (36%), Gaps = 83/624 (13%)
Query: 71 ESLVVPSGLPRNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLL 130
SL + L A+ A + D +L L Y L +R+ A LL
Sbjct: 11 HSLPMRYADFPTLVDALDY---AALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLL 67
Query: 131 TKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAGIVPVPIEVP--LTRRDAGS 188
+LK GDR+AL+ + F+ AF+ C +AG+V VP+ +P + +RD+ S
Sbjct: 68 --------SLNLKKGDRVALIAETS--SEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWS 117
Query: 189 QQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKLTWFVTEHLAKTPKDWAPQ 248
++ LL SC +T D L + P+L P+
Sbjct: 118 AKLQGLLASCQPAAIITGDEWLPLVNAATH-------DNPELHVLSHAWFKALPEADVAL 170
Query: 249 PRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHCRALTQ-ACHYTEGENMVCVL----D 303
R + AY++YT+ GV +T ++++ RA++ G+ V L D
Sbjct: 171 QRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHD 230
Query: 304 FKRETGLWHSVLTSVLNGMHAVYI-PYALMKVNPASWMQMITKYRASVAVVKSRDLHWG- 361
GL +LT V + Y+ P W+++I+K R +V+
Sbjct: 231 M----GLVGFLLTPVATQLSVDYLRTQDFAM-RPLQWLKLISKNRGTVS--------VAP 277
Query: 362 -----LLATK----DHKDISLSSLRLLLVGDGANPWSLSSCDQFLSVFQSKGLRPDAICP 412
L + D ++ LS R+ + GA P S QF F+ P
Sbjct: 278 PFGYELCQRRVNEKDLAELDLSCWRVAGI--GAEPISAEQLHQFAECFRQVNFDNKTFMP 335
Query: 413 CASSSE-CLTVSVRRPGR-AGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQVM 470
C +E L VS VN R +L G + T +CG+ +
Sbjct: 336 CYGLAENALAVSFSDEASGVVVNEVDRDILEYQ----GKAVAPGAETRAVSTFVNCGKAL 391
Query: 471 PGCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTALS 530
P + + + VG IC++ S Y+G +
Sbjct: 392 PEHGIEIR--NEAGMPVAERVVGHICISGPSLMSGYFGDQVSQDEIA------------- 436
Query: 531 QDTYTRSGLLGFLGPGGLVFVCGSRDGLMTVTGRKHNADDIIATVLAVEPMKFIYRGRIA 590
+ +G LG+L G L +V G L+ + GR DI I+ G
Sbjct: 437 ATGWLDTGDLGYLLDGYL-YVTGRIKDLIIIRGRNIWPQDIEYIAEQEP---EIHSGDAI 492
Query: 591 VFSIRVLRDERICVIAEQRPDCSEEESFQWMSRVLQAVDSIHQVGLYCLALVPPNYLPKT 650
F E+I + + R EE Q + + + S V + L+PP+ +P+T
Sbjct: 493 AFVT---AQEKIILQIQCRIS-DEERRGQLIHALAARIQSEFGVTA-AIDLLPPHSIPRT 547
Query: 651 PLGGIHLSECKRRFLEGNLHPANV 674
G +E K+R+ + NV
Sbjct: 548 SSGKPARAEAKKRYQKAYAASLNV 571
Score = 249 bits (637), Expect = 5e-71
Identities = 103/595 (17%), Positives = 202/595 (33%), Gaps = 72/595 (12%)
Query: 1181 APVPPGVSSVDTR-SAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLIC 1239
A G++ D R L L RAE LL + GD VALI + +
Sbjct: 31 ALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLSLN-LKKGDRVALIAETSSEFVE 89
Query: 1240 AFYGCLYVGAVPVTIRPP-HPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASN 1298
AF+ C Y G V V + P + ++ ++ + +++ + L+ A++
Sbjct: 90 AFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLV--NAATH 147
Query: 1299 VVDIKSWPTILDTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLC 1358
+ +P+ + P +AYL ++ +T G+ ++H V +
Sbjct: 148 DNPELHVLSHAWFKALPEA--DVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANL 205
Query: 1359 RSMKLACELYPSRHIALC-LDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSA 1417
R++ + L Y +G ++L+ V + + + + P WL
Sbjct: 206 RAISHDGIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKL 265
Query: 1418 VSQYRVRDTFCS-----YGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHL 1472
+S+ R T Y ELC + + + + L C R + AE I
Sbjct: 266 ISKNRG--TVSVAPPFGY---ELCQR----RVNEKDLAELDLSCWRVAGIGAE---PISA 313
Query: 1473 TS--AFSKLFSALGLSPRAVSTSFG---CRVNIAICLQGASSPEPSCVYVDLRAL-RNDR 1526
F++ F + + +G + ++ + + VD L +
Sbjct: 314 EQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEAS---GVVVNEVDRDILEYQGK 370
Query: 1527 VSLVERGSPHSLCLLESGKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLY 1586
+ + GK LP + I E + +G I + P SGY +
Sbjct: 371 AVAPGAETRAVSTFVNCGKALPEHGIEIR-NEAGMPVAERVVGHICISGPSLMSGY---F 426
Query: 1587 GDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDAVFVVG 1646
GD+ + + + TG LG+L ++V G
Sbjct: 427 GDQVSQDEIAATG---------WLDTGDLGYLLD-------------------GYLYVTG 458
Query: 1647 ALDETIMLRGMRYHPIDIENSVMRAHKKIAE--CAVFTW-TNLLVVVVELDGNESEALD- 1702
+ + I++RG P DIE +I F +++ ++ ++ E
Sbjct: 459 RIKDLIIIRGRNIWPQDIEYIA-EQEPEIHSGDAIAFVTAQEKIILQIQCRISDEERRGQ 517
Query: 1703 LVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLDPIYV 1757
L+ + + E + + ++ P +P S G+ R + + + V
Sbjct: 518 LIHALAARIQSEFGVTAAI-DLLPPHSIPRTSSGKPARAEAKKRYQKAYAASLNV 571
Score = 88.1 bits (219), Expect = 9e-18
Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 10/137 (7%)
Query: 761 GGPMEEDSDATRKHQFISEILKWRAASTSEHVIFTLLNSKGSAAQLLTCSQLHKRAERVG 820
PM T + + L + A S++ + + L L RAE
Sbjct: 12 SLPMRYADFPT-----LVDALDYAALSSAG---MNFYDRRCQLEDQLEYQTLKARAEAGA 63
Query: 821 ALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPP-HPQNLQTTLPTHQF 879
LL + GD VALI + + AF+ C Y G V V + P + Q
Sbjct: 64 KRLLSLN-LKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQG 122
Query: 880 ISEILKWRAASTSEHVI 896
+ + A T + +
Sbjct: 123 LLASCQPAAIITGDEWL 139
Score = 69.6 bits (171), Expect = 5e-12
Identities = 21/126 (16%), Positives = 48/126 (38%), Gaps = 7/126 (5%)
Query: 1004 LHD-AVFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAE--CAVFTW-TNLLVVVVEL 1059
L D ++V G + + I++RG P DIE +I F +++ ++
Sbjct: 449 LLDGYLYVTGRIKDLIIIRGRNIWPQDIEYIA-EQEPEIHSGDAIAFVTAQEKIILQIQC 507
Query: 1060 DGNESEALD-LVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQL 1118
++ E L+ + + E + + ++ P +P S G+ R + +
Sbjct: 508 RISDEERRGQLIHALAARIQSEFGVTAAI-DLLPPHSIPRTSSGKPARAEAKKRYQKAYA 566
Query: 1119 DPIYIW 1124
+ +
Sbjct: 567 ASLNVQ 572
Score = 68.1 bits (167), Expect = 1e-11
Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 4/87 (4%)
Query: 870 LQTTLPTHQFISEILKWRAASTSEHVIFTLLNSKGSAAQLLTCSQLHKRAERVGALLLER 929
L + + L + A S++ + + L L RAE LL
Sbjct: 13 LPMRYADFPTLVDALDYAALSSAG---MNFYDRRCQLEDQLEYQTLKARAEAGAKRLLSL 69
Query: 930 AKINTGDHVALIFPPGIDLICAFYGCL 956
+ GD VALI + + AF+ C
Sbjct: 70 N-LKKGDRVALIAETSSEFVEAFFACQ 95
Score = 35.0 bits (81), Expect = 0.23
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 12/49 (24%)
Query: 1123 IWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLR 1171
I + P SGY +GD+ + + + TG LG+L
Sbjct: 414 ICISGPSLMSGY---FGDQVSQDEIAATG---------WLDTGDLGYLL 450
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like
fold, AMP-binding; 2.05A {Mycobacterium tuberculosis}
PDB: 3e53_A
Length = 480
Score = 199 bits (507), Expect = 6e-55
Identities = 94/448 (20%), Positives = 164/448 (36%), Gaps = 42/448 (9%)
Query: 1189 SVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVG 1248
D A LT SQL++R V L TGD V + P G++ + AF G L G
Sbjct: 49 EQDWDGVAITLTWSQLYRRTLNVAQELSRCGS--TGDRVVISAPQGLEYVVAFLGALQAG 106
Query: 1249 AVPVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTI 1308
+ V + P T ++ S V +L+ + + + A + S P+I
Sbjct: 107 RIAVPLSVPQG---GVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGE--SPPSI 161
Query: 1309 LDTDDMPKKKLAAL-YRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACEL 1367
++ D + ++ AYL ++ +T AG+ MSH V +
Sbjct: 162 IEVDLLDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFA 221
Query: 1368 ------YPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQY 1421
P+ + L Y +G + + + + G+ ++L P PA W+ ++
Sbjct: 222 DTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASD 281
Query: 1422 RVRDTFC---SYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERP-RIHLTSAFS 1477
+ ++ EL + LG + T + +E + F+
Sbjct: 282 FHAFSAAPNFAF---ELAAR----RTTDDDMAGRDLGNILTILSGSE--RVQAATIKRFA 332
Query: 1478 KLFSALGLSPRAVSTSFG---CRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGS 1534
F+ L R + S+ V +A G P V D +L
Sbjct: 333 DRFARFNLQERVIRPSYWLAEATVYVATSKPGQ---PPETVDFDTESLSAGHA--KPCAG 387
Query: 1535 PHSLCLLESGKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQ 1594
+ L+ + V I + +T +C D +GEIWV + A+GY + E +
Sbjct: 388 GGATSLISYMLPRSPI-VRIVDSDTCIECPDGTVGEIWVHGDNVANGY---WQKPDESER 443
Query: 1595 QFSARLVTGNTGEL---YARTGYLGFLR 1619
F ++VT + G + RTG GF+
Sbjct: 444 TFGGKIVTPSPGTPEGPWLRTGDSGFVT 471
Score = 191 bits (486), Expect = 4e-52
Identities = 103/521 (19%), Positives = 176/521 (33%), Gaps = 73/521 (14%)
Query: 67 PAPGESLVVPSGLPRNLEAAIQRYGSATYKAPVATVLDPNG---KLSITLTYGKLLSRSL 123
+ G R+L AA++ P T +D ++ITLT+ +L R+L
Sbjct: 10 HSSGLVPRGSHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTL 69
Query: 124 KVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAGIVPVPIEVPLTR 183
VA L +GDR+ + P + ++ AF G + AG + VP+ VP +
Sbjct: 70 NVAQELS---------RCGSTGDRVVISAPQG--LEYVVAFLGALQAGRIAVPLSVP--Q 116
Query: 184 RDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKLTWFVTEHLAKTPK 243
++ +L LT+ + + + + A G + + L
Sbjct: 117 GGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRP----GESPPSIIEVDLLDLDAP 172
Query: 244 DWAPQPRLTDDTPAYIEYT---TDRDGSVMGVTVTRAAMLSHCRALTQACHYT------E 294
+ + AY++YT T + GV ++ + + L
Sbjct: 173 NGYTFKEDEYPSTAYLQYTSGST---RTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPP 229
Query: 295 GENMVCVLDFKRETGLWHSVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVAVVK 354
+V L F + GL + +L G AV PA WM ++ + +
Sbjct: 230 NSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHAFS--- 286
Query: 355 SRDLHWG------LLATK----DHKDISLSSLRLLLVGDGANPWSLSSCDQFLSVFQSKG 404
L A + D L ++ +L G+ ++ +F F
Sbjct: 287 -----AAPNFAFELAARRTTDDDMAGRDLGNILTILS--GSERVQAATIKRFADRFARFN 339
Query: 405 LRPDAICPCASSSE-CLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTL 463
L+ I P +E + V+ +PG+ LS G + TSL
Sbjct: 340 LQERVIRPSYWLAEATVYVATSKPGQPPETVD----FDTESLSAGHAKPCAGGGATSLI- 394
Query: 464 QDCGQVMPGCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLL 523
I+ +V D+ C VGEI V + YW P S TF ++
Sbjct: 395 -SYMLP-RSPIVRIVDSDT-CIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGK-IV 450
Query: 524 ADGTALSQDTYTRSGLLGFLGPGGLVFVCGSRDGLMTVTGR 564
+ + R+G GF+ DG M + GR
Sbjct: 451 TPSPGTPEGPWLRTGDSGFV-----------TDGKMFIIGR 480
Score = 89.8 bits (223), Expect = 2e-18
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
Query: 777 ISEILKWRAASTSEHVIFTLLNSKGSAAQL---LTCSQLHKRAERVGALLLERAKINTGD 833
+ L+ A FT ++ + + LT SQL++R V L TGD
Sbjct: 26 LPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS--TGD 83
Query: 834 HVALIFPPGIDLICAFYGCLYVGAVPVTIRPPHPQ 868
V + P G++ + AF G L G + V + P
Sbjct: 84 RVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGG 118
Score = 73.6 bits (181), Expect = 2e-13
Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 10/112 (8%)
Query: 863 RPPHPQNLQTTLPTHQFISEILKWRAASTSEHVIFTLLNSKGSAAQL---LTCSQLHKRA 919
+ + + + + L+ A FT ++ + + LT SQL++R
Sbjct: 9 HHSSGLVPRGSHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRT 68
Query: 920 ERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLC-----CPSNHPTPS 966
V L TGD V + P G++ + AF G L P + P
Sbjct: 69 LNVAQELSRCGS--TGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGG 118
Score = 40.8 bits (96), Expect = 0.004
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 1123 IWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGEL---YARTGYLGFLR 1171
IWV + A+GY + E + F ++VT + G + RTG GF+
Sbjct: 423 IWVHGDNVANGY---WQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT 471
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA
ligase; 1.84A {Burkholderia xenovorans}
Length = 529
Score = 101 bits (255), Expect = 4e-22
Identities = 79/482 (16%), Positives = 145/482 (30%), Gaps = 118/482 (24%)
Query: 112 TLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAG 171
+ TYG+L R+ + A L + +RI LV + + AF G ++AG
Sbjct: 48 STTYGELEERARRFASALR--------TLGVHPEERILLVMLDT--VALPVAFLGALYAG 97
Query: 172 IVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGE---------VV 222
+VPV LT D ++L + + S A ++ + +
Sbjct: 98 VVPVVANTLLTPAD-----YVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQ 152
Query: 223 AFKGWPKLTWFVTEHLAKTPKDWAPQPRLTDDTPAYIEYT---TDRDGSVMGVTVTRAAM 279
+ P+L E + DD A+ Y+ T G G T A +
Sbjct: 153 PRESEPRLAPLFEELIDAAAPAAKAAATGCDD-IAFWLYSSGST---GKPKGTVHTHANL 208
Query: 280 LSHCRALTQACH-YTEGENMVCVLDFKRETGLWHSVLTSVLNGMHAVYIPYALMKVNPAS 338
+ E + + GL + + + G A+ + + +
Sbjct: 209 YWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAE---RPTADA 265
Query: 339 WMQMITKYRASVAV-VKSRDLHWGLLATKDHKDISLSSLRLLLVGDGANPWSLSSCDQFL 397
+ ++R +V V + L+ +L + + + ++R+
Sbjct: 266 IFARLVEHRPTVFYGVPT--LYANMLVSPNLPARADVAIRI------------------- 304
Query: 398 SVFQSKGLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENS 457
C S+ E L + A G +L G + E
Sbjct: 305 ---------------CTSAGEALPREIGERFTA---HFGCEILDGIGST--------EML 338
Query: 458 LTSLTLQD-------CGQVMPGCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLP 510
L+ + G+ +PG + + D + EVG++ + YW
Sbjct: 339 HIFLSNRAGAVEYGTTGRPVPGYEIELR--DEAGHAVPDGEVGDLYIKGPSAAVMYWNNR 396
Query: 511 GLSNTTFKVTPLLADGTALSQDTYTRSGLLGFLGPGGLVFVCGSRDGLMTVTGRKHNADD 570
S TF + RSG P +G GR DD
Sbjct: 397 EKSRATF-------------LGEWIRSGDKYCRLP----------NGCYVYAGRS---DD 430
Query: 571 II 572
++
Sbjct: 431 ML 432
Score = 72.6 bits (179), Expect = 5e-13
Identities = 82/509 (16%), Positives = 159/509 (31%), Gaps = 125/509 (24%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 1258
T +L +RA R + L ++ + + L+ + L AF G LY G VPV
Sbjct: 49 TTYGELEERARRFASALRTL-GVHPEERILLVMLDTVALPVAFLGALYAGVVPV------ 101
Query: 1259 PQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKS--KEASNVVDIKSWPTILDTDDMPK 1316
N T ++ S + V+++ +++ + + A + +++
Sbjct: 102 VANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLA 161
Query: 1317 KKLAALYRAPTAEM---------LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACEL 1367
L A +A+ +S +TG G +H ++ EL
Sbjct: 162 PLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTH-------ANLYWTAEL 214
Query: 1368 YPSRHIAL--------CLDPYCGLGFALWV--LSSVYSGHHSILIPPSEVEVNPALWLSA 1417
Y + + + L + G +IL+ +
Sbjct: 215 YAKPILGIAENDVVFSAAKL--FFAYGLGNGLTFPLSVGATAILMAE---RPTADAIFAR 269
Query: 1418 VSQYRVRDTFCS----YGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLT 1473
+ ++R F Y M + A +R C E
Sbjct: 270 LVEHRPT-VFYGVPTLYANM----------LVSPNLPARADVAIRICTSAGE-------- 310
Query: 1474 SAFSKLFSALGLSPRAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERG 1533
AL PR + F I L G S E +++ ++R VE G
Sbjct: 311 --------AL---PREIGERFTAHFGCEI-LDGIGSTEMLHIFL------SNRAGAVEYG 352
Query: 1534 SPHSLCLLESGKLLPGVKVIIANPETKGQ-CGDSHLGEIWVQSPHNASGYFSLYGDESEY 1592
+ +G+ +PG ++ + + G D +G+++++ P A Y + + +
Sbjct: 353 T--------TGRPVPGYEIELRDEA--GHAVPDGEVGDLYIKGPSAAVMY---WNNREKS 399
Query: 1593 AQQFSAR-LVTGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDAVFVVGALDET 1651
F + +G+ G + R+ D + V
Sbjct: 400 RATFLGEWIRSGDKYCRLPN-GCYVYAGRS------------------DDMLKVS----- 435
Query: 1652 IMLRGMRYHPIDIENSVMRAHKKIAECAV 1680
G P+++E V+ H + E AV
Sbjct: 436 ----GQYVSPVEVE-MVLVQHDAVLEAAV 459
Score = 48.7 bits (117), Expect = 1e-05
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 807 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 864
T +L +RA R + L ++ + + L+ + L AF G LY G VPV
Sbjct: 49 TTYGELEERARRFASALRTL-GVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANT 105
Score = 37.2 bits (87), Expect = 0.051
Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 12/113 (10%)
Query: 910 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCL-----CCPSNHPT 964
T +L +RA R + L ++ + + L+ + L AF G L +N
Sbjct: 49 TTYGELEERARRFASALRTL-GVHPEERILLVMLDTVALPVAFLGALYAGVVPVVAN-TL 106
Query: 965 PSPSESSNHATHRQNDSG-RQQICSSLIQPKCDQTSQVEKLHDAVFVVGALDE 1016
+P++ + S R I S + Q + + +V E
Sbjct: 107 LTPAD----YVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRE 155
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 90.1 bits (223), Expect = 5e-18
Identities = 110/745 (14%), Positives = 196/745 (26%), Gaps = 271/745 (36%)
Query: 1065 EALDLVPLV-TNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLDPIYI 1123
+A PL ++ LE H L+V P S + L++ F +P
Sbjct: 2 DAYSTRPLTLSHGSLE-HVLLV-----------PTASFFIASQ--LQEQFNKILPEPT-- 45
Query: 1124 WVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVAGAPV 1183
+ + + EL + +LG++
Sbjct: 46 ----------------EGFAADDEPTTPA------ELVGK--FLGYV------------- 68
Query: 1184 PPGVSSVDTRSAAQLLTCSQLHKRAERVGALL--LERAKINTGD-H-VALIFPPGID--- 1236
+ L+ S++ + + + L E + D H +A D
Sbjct: 69 ------------SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 1237 -----LICAFYGCLYVGAVPVTIRPPHP------------------Q-NLQTTLPTVRMI 1272
LI + + P + Q N +R +
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL 176
Query: 1273 VDVSKS----VLVLSNQNVIKLLKSKEASNVV-----DIKSWPTILDTDDMPKKKLAALY 1323
++ S + + +L+++ + V +I W L+
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW---LENPS---------- 223
Query: 1324 RAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGL 1383
P + L + S G++ ++H VT + + P G
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQ---LAHYVVT--AKLLGFT----PGEL----RSYLKGA 270
Query: 1384 GFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGVMELCTKGLS-- 1441
+GH L+ A+ ++ D++ S+ K ++
Sbjct: 271 -----------TGHSQGLVT--------AVAIAET------DSWESF--FVSVRKAITVL 303
Query: 1442 ---GSIPQLKARNIAL--GCVRTCVVVAEERPRIHLTSAFSKLFSALGLSPRAVSTSFGC 1496
G N +L + + E P S + S L+ V
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVP--------SPMLSISNLTQEQVQDYVN- 354
Query: 1497 RVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSLCLLESGKLLPGVKVIIAN 1556
+ N + P V + +L N +LV G P SL L L K
Sbjct: 355 KTN-------SHLPAGKQVEI---SLVNGAKNLVVSGPPQSLYGLNL--TLRKAKA---- 398
Query: 1557 PETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTGNTGELYARTGYLG 1616
P Q + P SE +FS R
Sbjct: 399 PSGLDQS----------RIPF------------SERKLKFSNR----------------- 419
Query: 1617 FLRRTSP------AGVAGAPVPPGVSKLHDAVFVVGALDETIMLRGMRYHPIDIENSVMR 1670
FL SP A + + K ++ F + + Y D S +R
Sbjct: 420 FLPVASPFHSHLLVP-ASDLINKDLVK-NNVSFNAKDIQIPV------YDTFD--GSDLR 469
Query: 1671 AHK-----KIAECAVFT----WTNLLVVVVELDGNESEALDLVPLVTNAVLEEHHLIV-- 1719
+I +C + W + LD P + + H
Sbjct: 470 VLSGSISERIVDC-IIRLPVKWETT------TQFKATHILDFGPGGASGLGVLTHRNKDG 522
Query: 1720 -GVAVV----VDPGVVPINSRGEKQ 1739
GV V+ +D P + G KQ
Sbjct: 523 TGVRVIVAGTLDIN--PDDDYGFKQ 545
Score = 70.8 bits (173), Expect = 4e-12
Identities = 100/620 (16%), Positives = 182/620 (29%), Gaps = 208/620 (33%)
Query: 592 FSIRVLRDERICVI--------AEQRPDCSEEESFQWMSRVLQAVDSIHQVGLY--CLAL 641
F L+++ ++ A+ P E +++ V V+ +VG + L L
Sbjct: 28 FIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEP-SKVGQFDQVLNL 86
Query: 642 VPPNYLPKTPLGGIHLSECKRRFLEGNLHPANVLLCPHTCVTNLPKPREIHSGNCLAGQC 701
L+E + +LEGN ++ H L + +
Sbjct: 87 C--------------LTEFENCYLEGN----DI----HALAAKLLQEND-------TTLV 117
Query: 702 KRRFLEGNLHPANVLLCPHTCVTNLPKPREIHS------DIGPASVMV---GNIVQGNRL 752
K + L N A + + P ++ +S G A ++ G QGN
Sbjct: 118 KTKELIKNYITARI-------MAKRPFDKKSNSALFRAVGEGNAQLVAIFGG---QGNTD 167
Query: 753 ASAQGRDMGGPMEEDSDATRKHQFISEILKWRAASTSEHVIFTLLNSKGSAAQLLTCSQL 812
EE + ++ + T ++ L+ SA L +
Sbjct: 168 D---------YFEE----------LRDLYQ-----TYHVLVGDLIKF--SAETLSELIRT 201
Query: 813 HKRAER-------VGALLLERAKINTGDHVALIFP---PGIDLI-CAFY--GCLYVGAVP 859
AE+ + L + D++ I P P I +I A Y +G P
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI-PISCPLIGVIQLAHYVVTAKLLGFTP 260
Query: 860 VTIRPP------HPQNLQTTLPTHQFISEILKW----RAASTSEHVIF------------ 897
+R H Q L T + I+E W + + V+F
Sbjct: 261 GELRSYLKGATGHSQGLVTAV----AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 898 ----------TLLNSKGSAAQLLTCS-----QLHKRAERVGALLLERAKINTGDHVALI- 941
+L N++G + +L+ S Q+ + + L ++ ++L+
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV----EISLVN 372
Query: 942 ----F----PPGIDLICAFYGCLCCPSNHPTPSPSESSNHATHRQNDSGRQQIC------ 987
PP L YG L + + R+
Sbjct: 373 GAKNLVVSGPP-QSL----YG-LNLTLRKAKAPSGLDQSRIPFSE----RKLKFSNRFLP 422
Query: 988 ------SSLIQPKCDQTSQVEKLHDAVFVVGALDETIMLRGMRYHPIDIENSVMRAHK-- 1039
S L+ P D ++ ++ F + + Y D S +R
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV------YDTFD--GSDLRVLSGS 474
Query: 1040 ---KIAECAVFT----WTNLLVVVVELDGNESEALDLVPLVTNAVLEEHHLIV---GVAV 1089
+I +C + W + LD P + + H GV V
Sbjct: 475 ISERIVDC-IIRLPVKWETT------TQFKATHILDFGPGGASGLGVLTHRNKDGTGVRV 527
Query: 1090 V----VDPGVVPINSRGEKQ 1105
+ +D P + G KQ
Sbjct: 528 IVAGTLDIN--PDDDYGFKQ 545
Score = 65.1 bits (158), Expect = 2e-10
Identities = 106/665 (15%), Positives = 183/665 (27%), Gaps = 245/665 (36%)
Query: 14 WKVSAKI----QQLLNTLKRPKRRPLPEFYEDDD----IELEIA------ANPKDPNAPK 59
V QL + P F DD+ EL + ++ +P+
Sbjct: 20 LLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL-VGKFLGYVSSLVEPSKVG 78
Query: 60 PEGGVMTPAPGESLVVPSGLPRNLEAAIQRYGSATY------KAPVATVLDPNGKLSITL 113
V L + + + Y A A +L N TL
Sbjct: 79 QFDQV------------------LNLCLTEFEN-CYLEGNDIHALAAKLLQENDT---TL 116
Query: 114 TYGKLLSRSLKVAYTLLTKPINRTSESSL----KSGD-RIALVY----PNNDPINFLCAF 164
K L ++ A + +P ++ S S+L G+ ++ ++ +D L
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL 176
Query: 165 YGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAF 224
Y + +V I+ S L L +T F
Sbjct: 177 Y-QTYHVLVGDLIK--------------------------FSAETLSELIRTTLDAEKVF 209
Query: 225 -KGWPKLTWFVTEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAMLSHC 283
+G L W + P +TP +Y L
Sbjct: 210 TQGLNILEWL------ENP----------SNTPD-KDY------------------LLSI 234
Query: 284 R------ALTQACHYTEGENMVCVLDFKRETGLWHSVLTSVLNGM--HAVYIPYALMKVN 335
+ Q HY + + G L S L G H+ + A+
Sbjct: 235 PISCPLIGVIQLAHYV----VTA-----KLLGFTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 336 PASWMQMITKYRASVAVVKSRDLHW-GLLATKDHKDISLSSLRLLLV------GDGANPW 388
SW + + + L + G+ ++ +SL ++ +G P
Sbjct: 286 TDSWESF---FVSVRKAITV--LFFIGVRC---YEAYPNTSLPPSILEDSLENNEGV-PS 336
Query: 389 SLSSCDQFLSVFQSKGLRPDAI-------CPCASSSECLTVSVRRPGRAGVNATGRGVLS 441
+ LS+ L + + + + + +S+ VN V+
Sbjct: 337 PM------LSI---SNLTQEQVQDYVNKTNSHLPAGKQVEISL-------VNGAKNLVV- 379
Query: 442 MSG----LSYGVVR----------VDQENSLTSLTLQDCGQVMPGCIMTVVKMDSP---S 484
SG L YG+ +DQ S + + + SP
Sbjct: 380 -SGPPQSL-YGLNLTLRKAKAPSGLDQSRIPFS-------ERKLKFSNRFLPVASPFHSH 430
Query: 485 YLCK-TDEVGE---------------ICVASTGTGSQYWGLPGLSNTTFKVTPLLADG-- 526
L +D + + I V T GS L + ++ + D
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD------LRVLSGSISERIVDCII 484
Query: 527 ------TALSQDTYTRSGLLGFLGPGGLVFVCGSRDGLMTVTGRKHNAD-----DIIATV 575
+Q T +L F GPGG S G++T N D I+A
Sbjct: 485 RLPVKWETTTQFKATH--ILDF-GPGGA-----SGLGVLT----HRNKDGTGVRVIVAGT 532
Query: 576 LAVEP 580
L + P
Sbjct: 533 LDINP 537
Score = 48.1 bits (114), Expect = 3e-05
Identities = 99/658 (15%), Positives = 178/658 (27%), Gaps = 259/658 (39%)
Query: 228 PKLTWFVTEHLAKTPKDWAPQPRLT---DDTPA--------YIEYTTDR-DGSVMGVTVT 275
P ++F+ L + P+P DD P ++ Y + + S +G
Sbjct: 23 PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVG---Q 79
Query: 276 RAAMLSHCRALTQA-CHYTEGEN---MVCVLDFKRETGLW--HSVLTSVLNGMHAVYIPY 329
+L+ LT+ Y EG + + L + +T L ++ + + P+
Sbjct: 80 FDQVLNL--CLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPF 137
Query: 330 ------ALMKV----------------NPASW---MQMI-TKYRASVA--VVKSRDLHWG 361
AL + N + ++ + Y V + S +
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE 197
Query: 362 LLATKDHKDISLS-SLRLLLVGDGAN-----------PWS-----LSSCDQFLSVFQSKG 404
L+ T + + L +L + + P S + ++ + G
Sbjct: 198 LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG 257
Query: 405 LRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVL-------SMSGLSYGVVRVDQENS 457
P + R G +G++ + S S+ +
Sbjct: 258 FTPGEL---------------RSYLKGATGHSQGLVTAVAIAETDSWESF------FVSV 296
Query: 458 LTSLTL--------QDCGQVMPGCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGL 509
++T+ + P + PS L + E E G+
Sbjct: 297 RKAITVLFFIGVRCY---EAYPNTSL------PPSILEDSLENNE-------------GV 334
Query: 510 PGLSNTTFKVTPLLA-DGTALSQDT------YTRSGL---------LGFLGPGGLVFVCG 553
P +P+L+ L+Q+ T S L L G LV V G
Sbjct: 335 P---------SPMLSISN--LTQEQVQDYVNKTNSHLPAGKQVEISL-VNGAKNLV-VSG 381
Query: 554 SRDGLMTVTG--RKHNADDIIATVLAVEPMKFIYRGRIAVFSIRVLRDERICVIAEQRPD 611
L + RK A ++ + + R FS R L V + P
Sbjct: 382 PPQSLYGLNLTLRKAKAPS------GLDQSRIPFSERKLKFSNRFLP-----VAS---P- 426
Query: 612 CSEEESFQWMSRVLQAVDSIHQVGLYCLALVPPNYLPKTPLGGIHLSECKRRFLEGNLHP 671
F H + L L + +L
Sbjct: 427 ------F-------------H-----------------SHL----LVPASDLINK-DLVK 445
Query: 672 ANV------LLCP--HTCVTNLPKPREIHSGNCLAGQCKRRFLEGNLHPANVLLCPHTCV 723
NV + P T G+ L R L G++ + C+
Sbjct: 446 NNVSFNAKDIQIPVYDT-----------FDGSDL------RVLSGSISER---IVD--CI 483
Query: 724 TNLP-------KPREIHS-DIGPASV-----MVGNIVQGN--RLASAQGRDMGGPMEE 766
LP + + H D GP + G R+ A D P ++
Sbjct: 484 IRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLD-INPDDD 540
Score = 45.0 bits (106), Expect = 3e-04
Identities = 43/292 (14%), Positives = 80/292 (27%), Gaps = 110/292 (37%)
Query: 748 QGNRLASAQGRDMGGPME--EDSDATRKHQFISEILKWRAA--STSEHVIFTLL----NS 799
QG +Q + MG M+ + S A + ++ W A + F++L N+
Sbjct: 1624 QG-----SQEQGMG--MDLYKTSKAAQ------DV--WNRADNHFKDTYGFSILDIVINN 1668
Query: 800 KGSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVP 859
+ + + E A++ E I G I+ Y
Sbjct: 1669 PVNLTIHFGGEKGKRIRENYSAMIFE--TIVDGKLKTEKIFKEINEHSTSY--------- 1717
Query: 860 VTIRPP-----HPQNLQTTLPTHQFISEILKWRAASTSEHVIFTLLNSKG---------- 904
T R Q Q P A + E F L SKG
Sbjct: 1718 -TFRSEKGLLSATQFTQ---P------------ALTLMEKAAFEDLKSKGLIPADATFAG 1761
Query: 905 ------SA----AQLLTCSQ----LHKRAERVGALLLERAKINTGDHVALIFPPG----- 945
+A A +++ + R + + R ++ ++ + PG
Sbjct: 1762 HSLGEYAALASLADVMSIESLVEVVFYRG-MTMQVAVPRDELGRSNYGMIAINPGRVAAS 1820
Query: 946 ---------IDLICAFYGCLCCPSNHPTPSPSESSNHATHRQNDSGRQQICS 988
++ + G L N+ N +Q + +
Sbjct: 1821 FSQEALQYVVERVGKRTGWLVEIVNY----------------NVENQQYVAA 1856
Score = 35.4 bits (81), Expect = 0.23
Identities = 33/200 (16%), Positives = 60/200 (30%), Gaps = 58/200 (29%)
Query: 1371 RHIALCLDPYC-GLGFALWVLSSVYSGHHSILIPPSEVEVN------PALWLSAVSQYRV 1423
+ A+ + G + + S + ++ PAL L + +
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFED 1746
Query: 1424 ---------RDTFC--SYGVME---LCTKGLSGSIP-----QL-KARNIALGCVRTCVVV 1463
TF S G E L L+ + ++ R + +
Sbjct: 1747 LKSKGLIPADATFAGHSLG--EYAALA--SLADVMSIESLVEVVFYRGMT---------M 1793
Query: 1464 AEERPRIHLTSAFSKLFSALGLSPRAVSTSFGCRVNIAICLQ-GASSPE---------PS 1513
PR L + + + ++P V+ SF + + G + +
Sbjct: 1794 QVAVPRDELGRS---NYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVEN 1850
Query: 1514 CVYV---DLRALRNDRVSLV 1530
YV DLRAL D V+ V
Sbjct: 1851 QQYVAAGDLRAL--DTVTNV 1868
Score = 33.5 bits (76), Expect = 0.77
Identities = 37/174 (21%), Positives = 54/174 (31%), Gaps = 62/174 (35%)
Query: 2 ASLYCSNAGTGRWKVSAKIQQLLNTLKRP--KRRP------LP--------------EFY 39
SLY N + K + + Q + P +R+ LP +
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQS----RIPFSERKLKFSNRFLPVASPFHSHLLVPASDLI 439
Query: 40 EDDDIELEIAANPKDPNAPKPEGGVMTPAPGESL-VVPSGLPRNLEAAIQRYGSATYKAP 98
D ++ ++ N KD P V G L V+ + + I R P
Sbjct: 440 NKDLVKNNVSFNAKDIQIP-----VYDTFDGSDLRVLSGSISERIVDCIIR-------LP 487
Query: 99 V---------AT-VLD--PNGKLSITLTYGKLLSRSLK-------VAYTLLTKP 133
V AT +LD P G + G L R+ VA TL P
Sbjct: 488 VKWETTTQFKATHILDFGPGGASGL----GVLTHRNKDGTGVRVIVAGTLDINP 537
Score = 30.8 bits (69), Expect = 5.5
Identities = 49/284 (17%), Positives = 84/284 (29%), Gaps = 89/284 (31%)
Query: 681 CVTNLPKPREIHSGNCLAGQCKRRFLEGNLHPANVLLCPHTCVTNLPKPREIHSDIGPAS 740
V N P IH G G+ +R E + A + T V K +I +I S
Sbjct: 1664 IVINNPVNLTIHFG----GEKGKRIREN--YSA---MIFETIVDGKLKTEKIFKEINEHS 1714
Query: 741 VMVGNIVQGNRLASAQGRDMGGPMEEDSDATRKHQFISEILKWRAASTSEHVIFTLLNSK 800
+ AT+ Q A + E F L SK
Sbjct: 1715 TSY---------------TFRSE-KGLLSATQFTQ--------PALTLMEKAAFEDLKSK 1750
Query: 801 G----------------SAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGID 844
G +A L A + +E V ++F G+
Sbjct: 1751 GLIPADATFAGHSLGEYAA---LASL-----A---DVMSIE-------SLVEVVFYRGMT 1792
Query: 845 LICAF----YGCLYVGAVPVTIRPPHPQNLQTTLPTHQFISEILKWRAASTSEHV-I--F 897
+ A G G + + +P + + + + + +++ T V I +
Sbjct: 1793 MQVAVPRDELGRSNYGMIAI-----NPGRVAASF-SQEALQYVVERVGKRTGWLVEIVNY 1846
Query: 898 TLLNSKGSAAQLLTCSQLHKRA-ERVGALLLERAKINTGDHVAL 940
N + Q + + RA + V +L K+ D + L
Sbjct: 1847 ---NVENQ--QYV-AAG-DLRALDTVTN-VLNFIKLQKIDIIEL 1882
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
initiative, PSI-II, NYSGXRC, 11193J, structural
genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Length = 549
Score = 87.6 bits (218), Expect = 1e-17
Identities = 68/459 (14%), Positives = 139/459 (30%), Gaps = 105/459 (22%)
Query: 79 LPRNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTS 138
L ++AA +++G T A ++ + ++ + ++ + K+A + S
Sbjct: 21 LADRIDAAAEKFGEKT--AIISAEPKFPSEFPESMNFLEICEVTKKLASGI--------S 70
Query: 139 ESSLKSGDRIALVYPNNDPINFLCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSC 198
++ G+ + + PN+ I+++ Y PVPI + + +L
Sbjct: 71 RKGVRKGEHVGVCIPNS--IDYVMTIYALWRVAATPVPINPMYKSFE-----LEHILNDS 123
Query: 199 DIQVALTSDACLKGLPKTAAG---EVVAFKGWPKLTWFVTEHLAKTPKDWAPQPRLTDDT 255
+ + + E V G + +E + +D+ ++
Sbjct: 124 EATTLVVHSMLYENFKPVLEKTGVERVFVVGGEVNSL--SEVMDSGSEDFENVKVNPEED 181
Query: 256 PAYIEYTTDRDGSVMGVT-VTRAAMLSH------CRALTQACHYTEGENMVCVLDFKRET 308
A I YT G T + + ML+H L A + + +V +
Sbjct: 182 VALIPYTG-------GTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSA 234
Query: 309 GLWHSVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVA-VVKSRDLHWGLLATKD 367
V V G V + N + I KY+ + + V L+ T +
Sbjct: 235 EF-GLVNLMVTVGNEYVVMG----MFNQEMLAENIEKYKGTFSWAVPP--ALNVLVNTLE 287
Query: 368 --HKDISLSSLRLLLVGDGANPWSLSSCDQFLSVFQSKGLRPDAI----------CPCAS 415
+K S L++ G P + + ++ L + K P CP +
Sbjct: 288 SSNKTYDWSYLKVFATG-AW-PVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVT 345
Query: 416 SSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQVMPGCIM 475
+ + + + + G M +
Sbjct: 346 T--NPPLRLDKST------------T------------------------QGVPMSDIEL 367
Query: 476 TVVKMDSPSYLCKTDEVGEICVASTGTGSQ----YWGLP 510
V+ ++ L E GEI + G YW
Sbjct: 368 KVISLEDGREL-GVGESGEIVIR----GPNIFKGYWKRE 401
Score = 56.1 bits (136), Expect = 8e-08
Identities = 36/239 (15%), Positives = 84/239 (35%), Gaps = 36/239 (15%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 1258
+ ++ + +++ + + + + G+HV + P ID + Y V A PV I P
Sbjct: 53 MNFLEICEVTKKLASGISRK-GVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINP-- 109
Query: 1259 PQNLQTTLPTVR----MIVDVSKSVLVLSNQNVIKLLKSKEASNVV-------DIKSWPT 1307
+ ++ D + LV+ + E + V ++ S
Sbjct: 110 -------MYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGGEVNSLSE 162
Query: 1308 ILDTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACEL 1367
++D+ + + E +A + ++ TTGM G+ ++H + + + +A L
Sbjct: 163 VMDSGSEDFENVK----VNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGL 218
Query: 1368 YPSRHIALCLDPYC---GLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 1423
+ P G V V G+ +++ + + +Y+
Sbjct: 219 -SHMDTIVGCMPMFHSAEFGL---VNLMVTVGNEYVVMGMFN----QEMLAENIEKYKG 269
Score = 48.7 bits (117), Expect = 1e-05
Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Query: 777 ISEILKWRAASTSEHV--IFTLLNSKGSAAQLLTCSQLHKRAERVGALLLERAKINTGDH 834
+++ + A E I + + ++ + +++ + + + + G+H
Sbjct: 21 LADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRK-GVRKGEH 79
Query: 835 VALIFPPGIDLICAFYGCLYVGAVPVTIRP 864
V + P ID + Y V A PV I P
Sbjct: 80 VGVCIPNSIDYVMTIYALWRVAATPVPINP 109
Score = 37.2 bits (87), Expect = 0.051
Identities = 10/79 (12%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 880 ISEILKWRAASTSEHV--IFTLLNSKGSAAQLLTCSQLHKRAERVGALLLERAKINTGDH 937
+++ + A E I + + ++ + +++ + + + + G+H
Sbjct: 21 LADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRK-GVRKGEH 79
Query: 938 VALIFPPGIDLICAFYGCL 956
V + P ID + Y
Sbjct: 80 VGVCIPNSIDYVMTIYALW 98
Score = 37.2 bits (87), Expect = 0.057
Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 32/140 (22%)
Query: 1544 GKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTG 1603
G + +++ + + E + G GEI ++ P+ GY + E E + +
Sbjct: 359 GVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGY---WKREKENQECWWYDEKGR 415
Query: 1604 NTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDA---VFVVGALDETIMLRGMRYH 1660
RTG +GF+ D + + E I +G
Sbjct: 416 --KFF--RTGDVGFI---------------------DEEGFLHFQDRVKEVIKYKGYTIA 450
Query: 1661 PIDIENSVMRAHKKIAECAV 1680
P ++E ++ H+ + + AV
Sbjct: 451 PFELEA-LLMKHEAVMDVAV 469
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase);
ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis}
PDB: 3t5c_A 3t5b_A
Length = 517
Score = 87.6 bits (218), Expect = 1e-17
Identities = 55/322 (17%), Positives = 100/322 (31%), Gaps = 65/322 (20%)
Query: 79 LPRNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTS 138
+ L A V +TY ++ + + + A L
Sbjct: 18 IGWMLRQRATVSPRLQ-----AYVEPSTDV---RMTYAQMNALANRCADVLT-------- 61
Query: 139 ESSLKSGDRIALVYPNNDPINFLCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSC 198
+ GDR+AL+ PN+ F C FYG G V VPI L + + F+L
Sbjct: 62 ALGIAKGDRVALLMPNSVE--FCCLFYGAAKLGAVAVPINTRLAAPE-----VSFILSDS 114
Query: 199 DIQVALTSDACLKGLPKTAAG-----EVVAFKGWPKLTWFVTEHLAKTPKDWAPQPRLTD 253
+V + + A V + G L + A P
Sbjct: 115 GSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSAAAD-----EPAVECGG 169
Query: 254 DTPAYIEYT---TDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFKRETGL 310
D +I YT T G GV T ++ S + + ++ L +
Sbjct: 170 DDNLFIMYTSGTT---GHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPL------PM 220
Query: 311 WHS-----VLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASV-----AVVKSRDLHW 360
+H V+ S + G+ + +P + + +I + R + A++
Sbjct: 221 FHVAALTTVIFSAMRGVTLISMP----QFDATKVWSLIVEERVCIGGAVPAIL------N 270
Query: 361 GLLATKDHKDISLSSLRLLLVG 382
+ + ++ R + G
Sbjct: 271 FMRQVPEFAELDAPDFRYFITG 292
Score = 56.4 bits (137), Expect = 6e-08
Identities = 51/234 (21%), Positives = 90/234 (38%), Gaps = 17/234 (7%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 1258
+T +Q++ A R +L I GD VAL+ P ++ C FYG +GAV V
Sbjct: 44 MTYAQMNALANRCADVLTALG-IAKGDRVALLMPNSVEFCCLFYGAAKLGAVAV------ 96
Query: 1259 PQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDMPKKK 1318
P N + P V I+ S S +V+ ++ + + + D + ++
Sbjct: 97 PINTRLAAPEVSFILSDSGSKVVIYGAPSAPVID-AIRAQADPPGTVTDWIGADSLAERL 155
Query: 1319 LAALYRAPTAEM----LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIA 1374
+A P E ++ ++ TTG G+ +H +V S S ++ +
Sbjct: 156 RSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLL 215
Query: 1375 LCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFC 1428
L L P + V+ S G I +P + + S + + RV
Sbjct: 216 LPL-PMFHVAALTTVIFSAMRGVTLISMP----QFDATKVWSLIVEERVCIGGA 264
Score = 47.5 bits (114), Expect = 3e-05
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 777 ISEILKWRAASTSEH--VIFTLLNSKGSAAQLLTCSQLHKRAERVGALLLERAKINTGDH 834
I +L+ RA + + + + +T +Q++ A R +L I GD
Sbjct: 18 IGWMLRQRATVSPRLQAYVEPSTDVR------MTYAQMNALANRCADVLTALG-IAKGDR 70
Query: 835 VALIFPPGIDLICAFYGCLYVGAVPVTI 862
VAL+ P ++ C FYG +GAV V I
Sbjct: 71 VALLMPNSVEFCCLFYGAAKLGAVAVPI 98
Score = 37.5 bits (88), Expect = 0.039
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 880 ISEILKWRAASTSEH--VIFTLLNSKGSAAQLLTCSQLHKRAERVGALLLERAKINTGDH 937
I +L+ RA + + + + +T +Q++ A R +L I GD
Sbjct: 18 IGWMLRQRATVSPRLQAYVEPSTDVR------MTYAQMNALANRCADVLTALG-IAKGDR 70
Query: 938 VALIFPPGIDLICAFYGCL 956
VAL+ P ++ C FYG
Sbjct: 71 VALLMPNSVEFCCLFYGAA 89
Score = 31.4 bits (72), Expect = 3.2
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 10/44 (22%)
Query: 1544 GKLLPGVKVIIANPETK----GQCGDSHLGEIWVQSPHNASGYF 1583
G+ V + + G+ GE+ ++S Y+
Sbjct: 340 GRATMFTDVAVRGDDGVIREHGE------GEVVIKSDILLKEYW 377
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase;
HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB:
4fut_A*
Length = 503
Score = 87.3 bits (217), Expect = 1e-17
Identities = 66/413 (15%), Positives = 130/413 (31%), Gaps = 89/413 (21%)
Query: 112 TLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAG 171
++Y +L++R+ +VA L+ L+ GDR+A + L + + AG
Sbjct: 28 KISYAELVARAGRVANVLV--------ARGLQVGDRVAAQTEKSV--EALVLYLATVRAG 77
Query: 172 IVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKLT 231
V +P+ T ++ + + + ++ + + G+ AA +
Sbjct: 78 GVYLPLNTAYTLH-----ELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDG 132
Query: 232 WFVTEHLAKTPKDWAPQPRLTDDTPAYIEY---TTDRDGSVMGVTVTRAAMLSHCRALTQ 288
A + D A I Y TT G G ++ + S+ L
Sbjct: 133 RGSLTDAAAGASEAFATIDRGADDLAAILYTSGTT---GRSKGAMLSHDNLASNSLTLVD 189
Query: 289 ACHYTEGENMVCVLDFKRETGLWHSVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRA 348
+T + ++ L GL+ + ++ +++P K +P + ++ +
Sbjct: 190 YWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLP----KFDPDKILDLMARATV 245
Query: 349 SVAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGANPWSLSSCDQFLSVFQSKGLRPD 408
+ V + LL + + +RL + G A
Sbjct: 246 LMGVPT---FYTRLLQSPRLTKETTGHMRLFISG-SA----------------------- 278
Query: 409 AICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQD--- 465
P R A TG VL G++ E ++ + D
Sbjct: 279 ---PLL-------ADTHREWSA---KTGHAVLERYGMT--------ETNMNTSNPYDGDR 317
Query: 466 ----CGQVMPGCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQ----YWGLP 510
G +PG V ++ ++G I V G YW +P
Sbjct: 318 VPGAVGPALPGVSARVTDPETGK-ELPRGDIGMIEVK----GPNVFKGYWRMP 365
Score = 48.7 bits (117), Expect = 1e-05
Identities = 36/212 (16%), Positives = 78/212 (36%), Gaps = 18/212 (8%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 1258
++ ++L RA RV +L+ R + GD VA ++ + + + G V + +
Sbjct: 29 ISYAELVARAGRVANVLVAR-GLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL---- 83
Query: 1259 PQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLL-----KSKEASNVVDIKSWPTILDTDD 1313
N TL + + ++ +V+ + + + K + ++ D
Sbjct: 84 --NTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAA 141
Query: 1314 MPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHI 1373
+ A + R LA + ++ TTG G +SH + S ++ P +
Sbjct: 142 GASEAFATIDRGADD--LAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVL 199
Query: 1374 ALCLDPY--CGLGFALWVLSSVYSGHHSILIP 1403
L P G + ++++ I +P
Sbjct: 200 IHAL-PIYHTH-GLFVASNVTLFARGSMIFLP 229
Score = 46.4 bits (111), Expect = 8e-05
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 807 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 864
++ ++L RA RV +L+ R + GD VA ++ + + + G V + +
Sbjct: 29 ISYAELVARAGRVANVLVAR-GLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNT 85
Score = 37.6 bits (88), Expect = 0.038
Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 910 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCL 956
++ ++L RA RV +L+ R + GD VA ++ + + +
Sbjct: 29 ISYAELVARAGRVANVLVAR-GLQVGDRVAAQTEKSVEALVLYLATV 74
Score = 36.4 bits (85), Expect = 0.086
Identities = 30/141 (21%), Positives = 52/141 (36%), Gaps = 36/141 (25%)
Query: 1544 GKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVTG 1603
G LPGV + +PET + +G I V+ P+ GY + + +F
Sbjct: 323 GPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGY---WRMPEKTKSEF------- 372
Query: 1604 NTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDA---VFVVGALDETIMLRGMRYH 1660
+ + TG LG + D V ++G + ++ G +
Sbjct: 373 -RDDGFFITGDLGKI---------------------DERGYVHILGRGKDLVITGGFNVY 410
Query: 1661 PIDIENSVMRAHKKIAECAVF 1681
P +IE+ + A + E AV
Sbjct: 411 PKEIES-EIDAMPGVVESAVI 430
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL
EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Length = 536
Score = 81.1 bits (201), Expect = 1e-15
Identities = 86/461 (18%), Positives = 151/461 (32%), Gaps = 113/461 (24%)
Query: 79 LPRNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTS 138
L + + + S + NG TY + + +VA L +
Sbjct: 24 LHSYVLENLSNHSSKP-----CLINGANGD---VYTYADVELTARRVASGL--------N 67
Query: 139 ESSLKSGDRIALVYPNNDPINFLCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSC 198
+ ++ GD I L P++ F+ AF G G + T + + +
Sbjct: 68 KIGIQQGDVIMLFLPSS--PEFVLAFLGASHRGAIITAANPFSTPAE-----LAKHAKAS 120
Query: 199 DIQVALTSDACLKGLPKTAAG---EVVAFKGWPK--LTWFVTEHLAKTPKDWAPQPRLTD 253
++ +T + + A +V+ P L + L + ++ APQ ++
Sbjct: 121 RAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCLHF---SELTQADENEAPQVDISP 177
Query: 254 DTPAYIEY---TTDRDGSVMGVTVTRAAMLSH----------CRALTQACHYTEGENMVC 300
D + Y TT G GV ML+H ++ + ++C
Sbjct: 178 DDVVALPYSSGTT---GLPKGV------MLTHKGLITSVAQQVDGDNPNLYFHSEDVILC 228
Query: 301 VLDFKRETGLWHSVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVA-VVKSRDLH 359
VL L +L + G + +P K S + +I KY+ S+A VV +
Sbjct: 229 VLPMFHIYALNSIMLCGLRVGAPILIMP----KFEIGSLLGLIEKYKVSIAPVVPP--VM 282
Query: 360 WGLLATKDHKDISLSSLRLLLVGDGANPWSLSSCDQFLSVF------QSKGLRPDAICPC 413
+ + D LSSLR++ G GA P D + F Q G+
Sbjct: 283 MSIAKSPDLDKHDLSSLRMIKSG-GA-PLGKELEDTVRAKFPQARLGQGYGM-------- 332
Query: 414 ASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQVMPGC 473
+E V A + + + CG V+
Sbjct: 333 ---TEAGPVLAMCLAFA--------------------KEPFDIKPGA-----CGTVVRNA 364
Query: 474 IMTVVKMDSPSYLCKTDEVGEICVASTGTGSQ----YWGLP 510
M +V ++ + L ++ GEIC+ G Q Y P
Sbjct: 365 EMKIVDPETGASL-PRNQPGEICI----RGDQIMKGYLNDP 400
Score = 66.0 bits (162), Expect = 6e-11
Identities = 64/407 (15%), Positives = 131/407 (32%), Gaps = 81/407 (19%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 1258
T + + A RV + L + I GD + L P + + AF G + GA+ P
Sbjct: 50 YTYADVELTARRVASGL-NKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANP-- 106
Query: 1259 PQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNV----VD-----IKSWPTIL 1309
T + +L+ K+ S+V VD + +
Sbjct: 107 ---FSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCLHFSELT 163
Query: 1310 DTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACEL-- 1367
D+ + + + + L +S TTG+ G+ ++H + +
Sbjct: 164 QADENEAPQ-----VDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNL 218
Query: 1368 -YPSRHIALCLDP----YCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYR 1422
+ S + LC+ P Y +L + G +++P + L + +Y+
Sbjct: 219 YFHSEDVILCVLPMFHIY---ALNSIMLCGLRVGAPILIMP----KFEIGSLLGLIEKYK 271
Query: 1423 VRDTFCSYGV--MELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLF 1480
V + + V + + ++ S P L + L +R
Sbjct: 272 V--SI-APVVPPVMM---SIAKS-PDLDKHD--LSSLRMIKSGG---------------- 306
Query: 1481 SALGLSPRAVSTSFGCRVNIAICLQG----ASSPEPSCVYVDLRALRNDRVSLVERGSPH 1536
+ L + + + + A QG + P + + + + G+
Sbjct: 307 APL---GKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKP-----GA-- 356
Query: 1537 SLCLLESGKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYF 1583
G ++ ++ I +PET + GEI ++ GY
Sbjct: 357 ------CGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYL 397
Score = 47.5 bits (114), Expect = 3e-05
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 5/92 (5%)
Query: 773 KHQFISEILKWRAASTSEHVIFTLLNSKGSAAQLLTCSQLHKRAERVGALLLERAKINTG 832
K+ + + ++ S G+ + T + + A RV + L + I G
Sbjct: 20 KNLPLHSYVLENLSNHSSKPCLIN----GANGDVYTYADVELTARRVASGL-NKIGIQQG 74
Query: 833 DHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 864
D + L P + + AF G + GA+ P
Sbjct: 75 DVIMLFLPSSPEFVLAFLGASHRGAIITAANP 106
Score = 41.8 bits (99), Expect = 0.002
Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 15/114 (13%)
Query: 874 LPTHQFISEILKWRAASTSEHVIFTLLNSKGSAAQLLTCSQLHKRAERVGALLLERAKIN 933
+P + + + ++ S G+ + T + + A RV + L + I
Sbjct: 18 IPKNLPLHSYVLENLSNHSSKPCLIN----GANGDVYTYADVELTARRVASGL-NKIGIQ 72
Query: 934 TGDHVALIFPPGIDLICAFYGCL-----CCPSNHPTPSPSESSNHATHRQNDSG 982
GD + L P + + AF G +N P +P+E + HA S
Sbjct: 73 QGDVIMLFLPSSPEFVLAFLGASHRGAIITAAN-PFSTPAELAKHA----KASR 121
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
photoprotein, luminescence, aspulvinone, natural product
extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
Length = 550
Score = 80.0 bits (198), Expect = 3e-15
Identities = 73/467 (15%), Positives = 130/467 (27%), Gaps = 118/467 (25%)
Query: 79 LPRNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTS 138
L A++RY +A +TY + S+++A +
Sbjct: 22 AGEQLHKAMKRYALVPGT--IAFTDAHIEV---NITYAEYFEMSVRLAEAM--------K 68
Query: 139 ESSLKSGDRIALVYPNNDPINFLCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSC 198
L + RI + N+ + F G +F G+ P R+ + +
Sbjct: 69 RYGLNTNHRIVVCSENS--LQFFMPVLGALFIGVAVAPANDIYNERE-----LLNSMNIS 121
Query: 199 DIQVALTSDACLKGLPKTAA-----------GEVVAFKGWPKLTWFVTEHLAKTPKDWAP 247
V S L+ + ++G+ + FVT HL ++
Sbjct: 122 QPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDF 181
Query: 248 QPRLTD--DTPAYIEY---TTDRDGSVMGVTVTRA---AMLSHCRALTQACHYTEGENMV 299
P D T A I +T G GV + SH R ++
Sbjct: 182 VPESFDRDKTIALIMNSSGST---GLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAIL 238
Query: 300 CVLDFKRETGLWHSVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVA------VV 353
V+ F G++ + L ++ G V + + +++ + Y+ A
Sbjct: 239 SVVPFHHGFGMF-TTLGYLICGFRVVLMY----RFEEELFLRSLQDYKIQSALLVPTLFS 293
Query: 354 KSRDLHWGLLATKDHKDISLSSLRLLLVGDGANPWSLSSCDQFLSVFQSK------GLRP 407
+ LS+L + G P S + F GL
Sbjct: 294 -------FFAKSTLIDKYDLSNLHEIASG--GAPLSKEVGEAVAKRFHLPGIRQGYGL-- 342
Query: 408 DAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCG 467
+E + + P G
Sbjct: 343 ---------TETTSAILITPEGDDKPGA------------------------------VG 363
Query: 468 QVMPGCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQ----YWGLP 510
+V+P VV +D+ L ++ GE+CV G Y P
Sbjct: 364 KVVPFFEAKVVDLDTGKTL-GVNQRGELCV----RGPMIMSGYVNNP 405
Score = 64.2 bits (157), Expect = 3e-10
Identities = 31/245 (12%), Positives = 81/245 (33%), Gaps = 33/245 (13%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 1258
+T ++ + + R+ A ++R +NT + + + G L++G
Sbjct: 51 ITYAEYFEMSVRL-AEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPAND-- 107
Query: 1259 PQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVD-------------IKSW 1305
+ + + +V+ +S + + K+L ++ ++ +S
Sbjct: 108 ---IYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSM 164
Query: 1306 PTILDTDDMPKKKLAALYRAP--TAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMK- 1362
T + + P + +A + S +TG+ G+ + H +
Sbjct: 165 YTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARD 224
Query: 1363 -LACELYPSRHIALCLDPYC---GLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAV 1418
+ L + P+ G+ L + G +L+ L+L ++
Sbjct: 225 PIFGNQIIPDTAILSVVPFHHGFGMFT---TLGYLICGFRVVLMY----RFEEELFLRSL 277
Query: 1419 SQYRV 1423
Y++
Sbjct: 278 QDYKI 282
Score = 51.1 bits (123), Expect = 3e-06
Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 6/91 (6%)
Query: 774 HQFISEILKWRAASTSEHVIFTLLNSKGSAAQLLTCSQLHKRAERVGALLLERAKINTGD 833
+ + + +K R A + FT +T ++ + + R+ A ++R +NT
Sbjct: 23 GEQLHKAMK-RYALVPGTIAFT----DAHIEVNITYAEYFEMSVRL-AEAMKRYGLNTNH 76
Query: 834 HVALIFPPGIDLICAFYGCLYVGAVPVTIRP 864
+ + + G L++G
Sbjct: 77 RIVVCSENSLQFFMPVLGALFIGVAVAPAND 107
Score = 44.9 bits (107), Expect = 2e-04
Identities = 22/161 (13%), Positives = 50/161 (31%), Gaps = 17/161 (10%)
Query: 862 IRPPHPQNLQTTLPTHQFISEILKWRAASTSEHVIFTLLNSKGSAAQLLTCSQLHKRAER 921
+ P P + + + +K R A + FT +T ++ + + R
Sbjct: 8 KKGPAPFYPLEDGTAGEQLHKAMK-RYALVPGTIAFT----DAHIEVNITYAEYFEMSVR 62
Query: 922 VGALLLERAKINTGDHVALIFPPGIDLICAFYGCL-----CCPSNHPTPSPSESSNHATH 976
+ A ++R +NT + + + G L P+N + E +
Sbjct: 63 L-AEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPAN-DIYNERE----LLN 116
Query: 977 RQNDSG-RQQICSSLIQPKCDQTSQVEKLHDAVFVVGALDE 1016
N S S K + + + ++ + +
Sbjct: 117 SMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTD 157
Score = 39.9 bits (94), Expect = 0.009
Identities = 24/138 (17%), Positives = 48/138 (34%), Gaps = 30/138 (21%)
Query: 1543 SGKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVT 1602
GK++P + + + +T G + GE+ V+ P SGY +
Sbjct: 362 VGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGY---VNNPEATNALI------ 412
Query: 1603 GNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDAVFVVGALDETIMLRGMRYHPI 1662
+ + +G + + + F+V L I +G + P
Sbjct: 413 --DKDGWLHSGDIAYWDE------------------DEHFFIVDRLKSLIKYKGYQVAPA 452
Query: 1663 DIENSVMRAHKKIAECAV 1680
++E S++ H I + V
Sbjct: 453 ELE-SILLQHPNIFDAGV 469
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein
synthetase, PSI-2, protein structure initiative; 2.30A
{Staphylococcus aureus subsp}
Length = 501
Score = 79.5 bits (197), Expect = 4e-15
Identities = 42/293 (14%), Positives = 80/293 (27%), Gaps = 58/293 (19%)
Query: 112 TLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAG 171
+ TY L + +A L R+ L N+ + + C A
Sbjct: 26 SYTYQNLYCEASLLAKRLKAYQ-----------QSRVGLYIDNSIQ--SIILIHACWLAN 72
Query: 172 IVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAF------- 224
I I LT + + + S D+Q+ + + + + + F
Sbjct: 73 IEIAMINTRLTPNE-----MTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITT 127
Query: 225 ------KGWPKLTWFVTEHLAKTPKDWAPQPRLTDDTPAYIEYT---TDRDGSVMGVTVT 275
+ + K D A I +T T G V T
Sbjct: 128 NGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTT---GPQKAVPQT 184
Query: 276 RAAMLSHCRALTQACHYTEGENMVCVLD-FKRETGLWHSVLTSVLNGMHAVYIPYALMKV 334
+ ++ + N + VL + +L +V+ G + K
Sbjct: 185 FRNHYASAIGCKESLGFDRDTNWLSVLPIY--HISGLSVLLRAVIEGFTVRIVD----KF 238
Query: 335 NPASWMQMITKYRASV-----AVVKSRDLHWGLLATKDHKDISLSSLRLLLVG 382
N + MI R + + L+ +L+ +L+G
Sbjct: 239 NAEQILTMIKNERITHISLVPQTL------NWLM---QQGLHEPYNLQKILLG 282
Score = 49.9 bits (120), Expect = 7e-06
Identities = 32/244 (13%), Positives = 62/244 (25%), Gaps = 37/244 (15%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 1258
T L+ A + L K V L I I + C
Sbjct: 27 YTYQNLYCEASLLAKRL----KAYQQSRVGLYIDNSIQSIILIHACWLANIEIA------ 76
Query: 1259 PQNLQTTLPTVRMIVDVSKSVLVLS----NQNVIKLLKSKEASNVVDIKSWPTILDTDDM 1314
N + T + + L+ +++ + + +LD
Sbjct: 77 MINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMG 136
Query: 1315 PKKKLAALYRAPTAEMLAYLDFSVS------------TTGMLAGIKMSHAAVTSLCRSMK 1362
+ + P L+ S + TTG + + + K
Sbjct: 137 IQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCK 196
Query: 1363 LACELYPSRHIALCLDPYC---GLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVS 1419
+ L + P GL +L +V G ++ + N L+ +
Sbjct: 197 ESLGFDRD-TNWLSVLPIYHISGLS---VLLRAVIEGFTVRIVD----KFNAEQILTMIK 248
Query: 1420 QYRV 1423
R+
Sbjct: 249 NERI 252
Score = 46.0 bits (110), Expect = 1e-04
Identities = 14/88 (15%), Positives = 21/88 (23%), Gaps = 14/88 (15%)
Query: 777 ISEILKWRAASTSEH--VIFTLLNSKGSAAQLLTCSQLHKRAERVGALLLERAKINTGDH 834
+ L +A H + + T L+ A + L K
Sbjct: 3 LDFWLYKQAQQNGHHIAITD--------GQESYTYQNLYCEASLLAKRL----KAYQQSR 50
Query: 835 VALIFPPGIDLICAFYGCLYVGAVPVTI 862
V L I I + C I
Sbjct: 51 VGLYIDNSIQSIILIHACWLANIEIAMI 78
Score = 35.6 bits (83), Expect = 0.15
Identities = 13/79 (16%), Positives = 20/79 (25%), Gaps = 14/79 (17%)
Query: 880 ISEILKWRAASTSEH--VIFTLLNSKGSAAQLLTCSQLHKRAERVGALLLERAKINTGDH 937
+ L +A H + + T L+ A + L K
Sbjct: 3 LDFWLYKQAQQNGHHIAITD--------GQESYTYQNLYCEASLLAKRL----KAYQQSR 50
Query: 938 VALIFPPGIDLICAFYGCL 956
V L I I + C
Sbjct: 51 VGLYIDNSIQSIILIHACW 69
Score = 33.7 bits (78), Expect = 0.61
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 1544 GKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYF 1583
G V V I NP +G GE+ ++ + +GY
Sbjct: 330 GMPSANVDVKIKNPNKEGH------GELMIKGANVMNGYL 363
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel
adenylate-forming EN fold; HET: MCA AMP; 1.43A
{Streptomyces coelicolor} PDB: 3nyr_A*
Length = 505
Score = 77.3 bits (191), Expect = 2e-14
Identities = 94/535 (17%), Positives = 163/535 (30%), Gaps = 153/535 (28%)
Query: 55 PNAPKPEGGVMTPAPGESLVVPSGLPRNLEAAIQRYGSATYKAPVATVLDPNGKLSITLT 114
+ P G M+ S P A A +LT
Sbjct: 11 SSGLVPRGSHMS----------SLFPALSPAPTGAPADRP-----ALRFGER-----SLT 50
Query: 115 YGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAGIVP 174
Y +L + + A + R+A+ + A + AG+
Sbjct: 51 YAELAAAAGATA-------------GRIGGAGRVAVWATPA--METGVAVVAALLAGVAA 95
Query: 175 VPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKLTWFV 234
VP+ + ++ +L + L + P A E V
Sbjct: 96 VPLNPKSGDK-----ELAHILSDSAPSLVLAPPD-AELPPALGALERVD----------- 138
Query: 235 TEHLAKTPKDWAPQPRLTDDTPAYIEY---TTDRDGSVMGVTVTRAAMLSHCRALTQACH 291
+ + P+ D PA + Y TT G G + R A+ + AL A
Sbjct: 139 ---VDVRARGAVPEDGADDGDPALVVYTSGTT---GPPKGAVIPRRALATTLDALADAWQ 192
Query: 292 YTEGENMVCVLDFKRETGLWHSVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASV- 350
+T + +V L GL +L + G ++ + + + + A++
Sbjct: 193 WTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG----RFSTEGAARELND-GATML 247
Query: 351 AVVKSRDLHWGLLATKD---HKDISLSSLRLLLVGDGANPWSLSSCDQFLSVFQSKGLRP 407
V + ++ + T +L+ RLL+ G
Sbjct: 248 FGVPT--MYHRIAETLPADPELAKALAGARLLVSG------------------------- 280
Query: 408 DAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQD-- 465
S++ L V A ATGR V+ G++ E + + D
Sbjct: 281 -------SAA--LPVHDHERIAA---ATGRRVIERYGMT--------ETLMNTSVRADGE 320
Query: 466 -----CGQVMPGCIMTVVKMD-SPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKV 519
G +PG + +V+ D +P + VGEI V ++Y P
Sbjct: 321 PRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRP--------- 371
Query: 520 TPLLADGTA--LSQDTYTRSGLLGFLGPGGLVFVCGSRDGLMTVTGRKHNADDII 572
D TA ++D + R+G + P DG + + GRK A D+I
Sbjct: 372 -----DATAAAFTEDGFFRTGDMAVRDP----------DGYVRIVGRK--ATDLI 409
Score = 49.2 bits (118), Expect = 1e-05
Identities = 31/205 (15%), Positives = 62/205 (30%), Gaps = 24/205 (11%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 1258
LT ++L A + VA+ P ++ A L G V
Sbjct: 49 LTYAELAAAAGATAGRIGG------AGRVAVWATPAMETGVAVVAALLAGVAAV------ 96
Query: 1259 PQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDMPKKK 1318
P N ++ + I+ S LVL+ ++ + ++ +
Sbjct: 97 PLNPKSGDKELAHILSDSAPSLVLAPP------DAELPPALGALERVDVDVRARG----- 145
Query: 1319 LAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLD 1378
A A + ++ TTG G + A+ + ++ A + + L
Sbjct: 146 -AVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLP 204
Query: 1379 PYCGLGFALWVLSSVYSGHHSILIP 1403
+ G L +L + G +
Sbjct: 205 LFHVHGLVLGILGPLRRGGSVRHLG 229
Score = 42.6 bits (101), Expect = 0.001
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 6/61 (9%)
Query: 807 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 866
LT ++L A + VA+ P ++ A L G V + P
Sbjct: 49 LTYAELAAAAGATAGRIGG------AGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKS 102
Query: 867 P 867
Sbjct: 103 G 103
Score = 37.2 bits (87), Expect = 0.051
Identities = 28/143 (19%), Positives = 46/143 (32%), Gaps = 37/143 (25%)
Query: 1544 GKLLPGVKVIIANPETK--GQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSA--R 1599
G LPGV++ + + +GEI V+ P+ + Y A F+
Sbjct: 327 GVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEY---LNRPDATAAAFTEDGF 383
Query: 1600 LVTGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDAVFVVG-ALDETIMLRGMR 1658
TG+ GY+ +VG + I G +
Sbjct: 384 FRTGDMAVRDPD-GYV---------------------------RIVGRKATDLIKSGGYK 415
Query: 1659 YHPIDIENSVMRAHKKIAECAVF 1681
+IEN + H ++ E AV
Sbjct: 416 IGAGEIEN-ALLEHPEVREAAVT 437
Score = 34.5 bits (80), Expect = 0.32
Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 6/47 (12%)
Query: 910 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCL 956
LT ++L A + VA+ P ++ A L
Sbjct: 49 LTYAELAAAAGATAGRIGG------AGRVAVWATPAMETGVAVVAAL 89
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 76.5 bits (189), Expect = 4e-14
Identities = 72/473 (15%), Positives = 128/473 (27%), Gaps = 131/473 (27%)
Query: 79 LPRNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTS 138
L ++RY +A G +Y + L +S + L
Sbjct: 25 AGTQLRKYMERYAKLG---AIAFTNAVTGV---DYSYAEYLEKSCCLGKAL--------Q 70
Query: 139 ESSLKSGDRIALVYPNNDPINFLCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSC 198
L RIAL N F +F G+ P T R+ + LG
Sbjct: 71 NYGLVVDGRIALCSENC--EEFFIPVIAGLFIGVGVAPTNEIYTLRE-----LVHSLGIS 123
Query: 199 DIQVALTSDACLKGLPKTAA-----------GEVVAFKGWPKLTWFVTEHLAKTPK--DW 245
+ +S L + V ++G+ L F+ + + +
Sbjct: 124 KPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSF 183
Query: 246 APQPRLTDDTPAYIEY---TTDRDGSVMGVTVTRAAMLSH---------CRALTQACHYT 293
+ A I +T G GV L+H R +
Sbjct: 184 KTVEVDRKEQVALIMNSSGST---GLPKGV------QLTHENIVTRFSHARDPIYGNQVS 234
Query: 294 EGENMVCVLDFKRETGLWHSVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVA-- 351
G ++ V+ F G+ + L ++ G V + K + ++++ + Y+ +
Sbjct: 235 PGTAVLTVVPFHHGFGM-FTTLGYLICGFRVVMLT----KFDEETFLKTLQDYKCTSVIL 289
Query: 352 ----VVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGANPWSLSSCDQFLSVFQSK---- 403
L ++ LS+L + G P S + F
Sbjct: 290 VPTLFA-------ILNKSELLNKYDLSNLVEIASG--GAPLSKEVGEAVARRFNLPGVRQ 340
Query: 404 --GLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSL 461
GL +E + + P
Sbjct: 341 GYGL-----------TETTSAIIITPEGDDKPGA-------------------------- 363
Query: 462 TLQDCGQVMPGCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQ----YWGLP 510
G+V+P V+ +D+ L + GE+CV G Y P
Sbjct: 364 ----SGKVVPLFKAKVIDLDTKKSL-GPNRRGEVCV----KGPMLMKGYVNNP 407
Score = 64.9 bits (159), Expect = 1e-10
Identities = 25/245 (10%), Positives = 80/245 (32%), Gaps = 33/245 (13%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 1258
+ ++ +++ + L+ + +AL + L++G
Sbjct: 53 YSYAEYLEKSCCL-GKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNE-- 109
Query: 1259 PQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVD-------------IKSW 1305
+ T V + +++ S + + K++ ++ + +
Sbjct: 110 ---IYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCL 166
Query: 1306 PTILDTDDMPKKKLAALYRAP--TAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMK- 1362
T + + P + ++ E +A + S +TG+ G++++H + + +
Sbjct: 167 DTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARD 226
Query: 1363 -LACELYPSRHIALCLDPYC---GLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAV 1418
+ L + P+ G+ L + G +++ + + +L +
Sbjct: 227 PIYGNQVSPGTAVLTVVPFHHGFGMFT---TLGYLICGFRVVMLT----KFDEETFLKTL 279
Query: 1419 SQYRV 1423
Y+
Sbjct: 280 QDYKC 284
Score = 48.0 bits (115), Expect = 2e-05
Identities = 5/58 (8%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
Query: 807 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 864
+ ++ +++ + L+ + +AL + L++G
Sbjct: 53 YSYAEYLEKSCCL-GKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNE 109
Score = 40.7 bits (96), Expect = 0.005
Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 30/138 (21%)
Query: 1543 SGKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESEYAQQFSARLVT 1602
SGK++P K + + +TK G + GE+ V+ P GY + +
Sbjct: 364 SGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGY---VNNPEATKELI------ 414
Query: 1603 GNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDAVFVVGALDETIMLRGMRYHPI 1662
E + TG +G+ F+V L I +G + P
Sbjct: 415 --DEEGWLHTGDIGYYDE------------------EKHFFIVDRLKSLIKYKGYQVPPA 454
Query: 1663 DIENSVMRAHKKIAECAV 1680
++E SV+ H I + V
Sbjct: 455 ELE-SVLLQHPSIFDAGV 471
Score = 38.3 bits (90), Expect = 0.021
Identities = 11/110 (10%), Positives = 29/110 (26%), Gaps = 12/110 (10%)
Query: 910 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCL-----CCPSNHPT 964
+ ++ +++ + L+ + +AL + L P+N
Sbjct: 53 YSYAEYLEKSCCL-GKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTN-EI 110
Query: 965 PSPSESSNHATHRQNDSG-RQQICSSLIQPKCDQTSQVEKLHDAVFVVGA 1013
+ E H S S K + + ++ +
Sbjct: 111 YTLRE----LVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDS 156
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics,
PSI-2, protein S initiative, fatty acid synthesis; HET:
GOL; 2.00A {Rhodopseudomonas palustris}
Length = 509
Score = 76.0 bits (188), Expect = 4e-14
Identities = 68/422 (16%), Positives = 123/422 (29%), Gaps = 110/422 (26%)
Query: 112 TLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAG 171
LT+ L+R+ ++A LL + +GDR+A++ N + G
Sbjct: 31 RLTHRDYLARAERLASGLL--------RDGVHTGDRVAILSQNCSE--MIELIGAVALIG 80
Query: 172 IVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAG-----EVVAFKG 226
+ +P+ L + I F+LG V + + + A
Sbjct: 81 AILLPVNYRLNADE-----IAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGD 135
Query: 227 WPKLTWFVTEHLAKTPKDWAPQPRLTDDTPAYIEYT---TDRDGSVMGVTVTRAAMLSHC 283
+ + TP P I +T G G +++ +L
Sbjct: 136 GSGPFAPFKDLASDTP---FSAPEFGAADGFVIIHTAAVG---GRPRGALISQGNLLIAQ 189
Query: 284 RALTQACHYTEGENMVCVLDFKRETGLWHS-----VLTSVLNGMHAVYIPYALMKVNPAS 338
+L A TE + + +L L+H +LT G +V K +PA
Sbjct: 190 SSLVDAWRLTEADVNLGML------PLFHVTGLGLMLTLQQAGGASVIAA----KFDPAQ 239
Query: 339 WMQMITKYRASV-----AVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGANPWSLSSC 393
+ I ++ +V ++ +L L+SLR + P ++
Sbjct: 240 AARDIEAHKVTVMAEFAPML------GNILDQAAPAQ--LASLRAVTG--LDTPETIERF 289
Query: 394 DQFL---SVFQSKGLRPDAICPCASSSEC--LTVSVRRPGRAGVNATGRGVLSMSGLSYG 448
+ + + + G SE L+ R
Sbjct: 290 EATCPNATFWATFGQ-----------SETSGLSTFAPYRDRPK----------------- 321
Query: 449 VVRVDQENSLTSLTLQDCGQVMPGCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQYWG 508
S G+ + + VV D+ EVGEI + YW
Sbjct: 322 -----------S-----AGRPLFWRTVAVV--DAEDRPLPPGEVGEIVLRGPTVFKGYWN 363
Query: 509 LP 510
Sbjct: 364 NA 365
Score = 52.9 bits (128), Expect = 6e-07
Identities = 37/235 (15%), Positives = 80/235 (34%), Gaps = 19/235 (8%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 1258
LT RAER+ + LL ++TGD VA++ ++I +GA+ +
Sbjct: 32 LTHRDYLARAERLASGLLRDG-VHTGDRVAILSQNCSEMIELIGAVALIGAILL------ 84
Query: 1259 PQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDMPKKK 1318
P N + + ++ +V++ + ++ ++ +K I D
Sbjct: 85 PVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVA-GVLPSLGGVKKAYAIGDGSGPFAPF 143
Query: 1319 LAALYRAPTAEM------LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRH 1372
P + + + + G G +S + S+ A L +
Sbjct: 144 KDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADV 203
Query: 1373 IALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTF 1427
L P + +L+ +G S++ + +PA + ++V
Sbjct: 204 NLGML-PLFHVTGLGLMLTLQQAGGASVIAA----KFDPAQAARDIEAHKVTVMA 253
Score = 45.2 bits (108), Expect = 2e-04
Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 777 ISEILKWRAASTSEH--VIFTLLNSKGSAAQLLTCSQLHKRAERVGALLLERAKINTGDH 834
++++ + AA + + LT RAER+ + LL ++TGD
Sbjct: 8 LADVYRRNAALFPDRTAFMV--------DGVRLTHRDYLARAERLASGLLRDG-VHTGDR 58
Query: 835 VALIFPPGIDLICAFYGCLYVGAVPVTI 862
VA++ ++I +GA+ + +
Sbjct: 59 VAILSQNCSEMIELIGAVALIGAILLPV 86
Score = 36.4 bits (85), Expect = 0.10
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 11/79 (13%)
Query: 880 ISEILKWRAASTSEH--VIFTLLNSKGSAAQLLTCSQLHKRAERVGALLLERAKINTGDH 937
++++ + AA + + LT RAER+ + LL ++TGD
Sbjct: 8 LADVYRRNAALFPDRTAFMV--------DGVRLTHRDYLARAERLASGLLRDG-VHTGDR 58
Query: 938 VALIFPPGIDLICAFYGCL 956
VA++ ++I
Sbjct: 59 VAILSQNCSEMIELIGAVA 77
Score = 33.3 bits (77), Expect = 0.82
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 1544 GKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYF 1583
G+ L V + + E + +GEI ++ P GY+
Sbjct: 324 GRPLFWRTVAVVDAEDR-PLPPGEVGEIVLRGPTVFKGYW 362
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase
domain alternation confo change; 2.00A {Alcaligenes SP}
SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X*
2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Length = 504
Score = 74.9 bits (185), Expect = 1e-13
Identities = 64/451 (14%), Positives = 126/451 (27%), Gaps = 104/451 (23%)
Query: 79 LPRNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTS 138
+ L A R A + G + LT+ +L +R VA L
Sbjct: 4 VNEMLRRAATRAPDHC-----ALAVPARG---LRLTHAELRARVEAVAARLH-------- 47
Query: 139 ESSLKSGDRIALVYPNNDPINFLCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSC 198
L+ R+A+V PN+ + + A G VP + L + + L+
Sbjct: 48 ADGLRPQQRVAVVAPNSA--DVVIAILALHRLGAVPALLNPRLKSAE-----LAELIKRG 100
Query: 199 DIQVALTSDACLKGLPKTAAGEVVAFKGWPKLTWFVTEHLAKTPKDWAPQPRLTDDTPAY 258
++ A+ + A + + L V + + P+ PA+
Sbjct: 101 EMTAAVIAVGR---QVADAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAF 157
Query: 259 IEY---TTDRDGSVMGVTVTRAAMLSHCRALTQAC--HYTEGENMVCVLDFKRETGLWHS 313
I Y TT G + + A S ++ + ++ ++ G +
Sbjct: 158 IFYTSGTT---GLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAV 214
Query: 314 VLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLH------WGLLATKD 367
++ ++ V + + P +Q++ + + + L L A
Sbjct: 215 LVAALALDGTYVVVE----EFRPVDALQLVQQEQVTS-------LFATPTHLDALAAAAA 263
Query: 368 --HKDISLSSLRLLLVGDGANPWSLSSCDQFLSVFQSKGLRPDAICPCASSSECLTVSVR 425
+ L SLR + GA + + P ++E +
Sbjct: 264 HAGSSLKLDSLRHVTFA-GA-TMPDAVLETVHQHL------PGEKVNIYGTTEAMNSLYM 315
Query: 426 RPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTSLTLQDCGQVMPGCIMTVVKMDSPSY 485
R + G + +V++
Sbjct: 316 RQPKTG---------------------------------TEMAPGFFSEVRIVRIGGGVD 342
Query: 486 -LCKTDEVGEICVASTGTGSQ-----YWGLP 510
+ E GE+ VA S Y P
Sbjct: 343 EIVANGEEGELIVA----ASDSAFVGYLNQP 369
Score = 56.0 bits (136), Expect = 8e-08
Identities = 74/509 (14%), Positives = 136/509 (26%), Gaps = 131/509 (25%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 1258
LT ++L R E V A L + VA++ P D++ A +GAVP +
Sbjct: 30 LTHAELRARVEAVAARLHADG-LRPQQRVAVVAPNSADVVIAILALHRLGAVPALL---- 84
Query: 1259 PQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDMPKKK 1318
N + + ++ + + + + A + S I+ D+ +
Sbjct: 85 --NPRLKSAELAELIKRGEMTAAVI------AVGRQVADAIFQSGSGARIIFLGDLVRDG 136
Query: 1319 LAALYRAPTAEM------LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRH 1372
Y P + A++ ++ TTG+ + A S M L RH
Sbjct: 137 EPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRH 196
Query: 1373 -IALCLDPY--CGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCS 1429
+ L L P GF +++++ +++ E P L V Q +V F
Sbjct: 197 NVVLGLMPLYHVV-GFFAVLVAALALDGTYVVVE----EFRPVDALQLVQQEQVTSLF-- 249
Query: 1430 YGV-----MELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLFSALG 1484
+ ++ L +R
Sbjct: 250 -ATPTHLDALA-------AAAAHAGSSLKLDSLRHVTF---------------------A 280
Query: 1485 LSP------RAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVERGSPHSL 1538
+ V + I + + + +
Sbjct: 281 GATMPDAVLETVHQHLPGEK-VNIYGTTEAMN----------------SLYMRQPKTGT- 322
Query: 1539 CLLESGKLLPGVKVIIANPETKGQ--CGDSHLGEIWVQ-SPHNASGYFSLYGDESEYAQQ 1595
+V I + GE+ V S GY A++
Sbjct: 323 ----EMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGY---LNQPQATAEK 375
Query: 1596 FSARLVTGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDA---VFVVGALDETI 1652
G RT + V ++G +D+ I
Sbjct: 376 LQD-------GWY--RTSDVAVW---------------------TPEGTVRILGRVDDMI 405
Query: 1653 MLRGMRYHPIDIENSVMRAHKKIAECAVF 1681
+ G HP +IE V+ + E V
Sbjct: 406 ISGGENIHPSEIER-VLGTAPGVTEVVVI 433
Score = 46.0 bits (110), Expect = 1e-04
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 777 ISEILKWRAASTSEH--VIFTLLNSKGSAAQLLTCSQLHKRAERVGALLLERAKINTGDH 834
++E+L+ A +H + + LT ++L R E V A L +
Sbjct: 4 VNEMLRRAATRAPDHCALAV------PARGLRLTHAELRARVEAVAARLHADG-LRPQQR 56
Query: 835 VALIFPPGIDLICAFYGCLYVGAVPVTI 862
VA++ P D++ A +GAVP +
Sbjct: 57 VAVVAPNSADVVIAILALHRLGAVPALL 84
Score = 34.8 bits (81), Expect = 0.26
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Query: 880 ISEILKWRAASTSEH--VIFTLLNSKGSAAQLLTCSQLHKRAERVGALLLERAKINTGDH 937
++E+L+ A +H + + LT ++L R E V A L +
Sbjct: 4 VNEMLRRAATRAPDHCALAV------PARGLRLTHAELRARVEAVAARLHADG-LRPQQR 56
Query: 938 VALIFPPGIDLICAFYGCL 956
VA++ P D++ A
Sbjct: 57 VAVVAPNSADVVIAILALH 75
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide
synthetase, antibiotic biosynthesis, siderophore
formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP:
e.23.1.1 PDB: 1md9_A* 1mdf_A
Length = 539
Score = 73.3 bits (181), Expect = 3e-13
Identities = 51/319 (15%), Positives = 98/319 (30%), Gaps = 49/319 (15%)
Query: 79 LPRNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTS 138
L +YG A + +Y +L +R+ ++A
Sbjct: 27 FGDLLRDRAAKYGDRI-----AITCG-----NTHWSYRELDTRADRLAAGFQ-------- 68
Query: 139 ESSLKSGDRIALVYPNNDPINFLCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSC 198
+ ++ DR+ + PN F + G +PV + I +
Sbjct: 69 KLGIQQKDRVVVQLPNI--KEFFEVIFALFRLGALPVFALPSHRSSE-----ITYFCEFA 121
Query: 199 DIQVALTSDACLKGLPKTAAGEVVAFKGWPKLTWFVT-------EHLAKTPKDWAPQPRL 251
+ + DA ++ A +V + P L + L + P +
Sbjct: 122 EAAAYIIPDAYSGFDYRSLARQVQS--KLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEV 179
Query: 252 TDDTPAYIEY---TTDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFKRET 308
A+++ +T G + T + + + C + L
Sbjct: 180 KSSDVAFLQLSGGST---GLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNY 236
Query: 309 GLWHS-VLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASV-AVVKSRDLHWGLLATK 366
L VL + G V P +P +I + + ++ A+V L +
Sbjct: 237 PLSSPGVLGVLYAGGRVVLSP----SPSPDDAFPLIEREKVTITALVPP--LAMVWMDAA 290
Query: 367 DHKDISLSSLRLLLVGDGA 385
+ LSSL++L VG GA
Sbjct: 291 SSRRDDLSSLQVLQVG-GA 308
Score = 49.5 bits (119), Expect = 1e-05
Identities = 81/512 (15%), Positives = 154/512 (30%), Gaps = 130/512 (25%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 1258
+ +L RA+R+ A + I D V + P + + +GA+PV P H
Sbjct: 51 WSYRELDTRADRLAAGFQKL-GIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSH 109
Query: 1259 PQNLQTTLPTVRMIVDVSKSVLVL--------SNQNVIKLLKSKEAS--NVVDIKSWPTI 1308
+ + +++ + +++ + ++SK + N++
Sbjct: 110 ------RSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEF 163
Query: 1309 LDTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELY 1368
L +D+ + + +A+L S +TG+ I +H + C L
Sbjct: 164 LPLEDLHTE--PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLD 221
Query: 1369 PSRHIALCLDPYCGL-------GFAL-WVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQ 1420
S Y + VL +Y+G +L P +P + +
Sbjct: 222 HS-------TVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP----SPSPDDAFPLIER 270
Query: 1421 YRVRDTFCSYGV-----MELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSA 1475
+V T V + + + + L ++ V
Sbjct: 271 EKV--TIT-ALVPPLAMVWMDA-------ASSRRDD--LSSLQVLQV------------- 305
Query: 1476 FSKLFSALGLSP------RAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSL 1529
G + R V FGC + G + E Y L V+
Sbjct: 306 --------GGAKFSAEAARRVKAVFGCTLQQVF---GMA--EGLVNYTRLDDPEEIIVNT 352
Query: 1530 VERGSPHSLCLLESGKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDE 1589
G P + P + + + + G + + P+ GY Y E
Sbjct: 353 Q--GKP----------MSPYDESRVWDDHDR-DVKPGETGHLLTRGPYTIRGY---YKAE 396
Query: 1590 SEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDAVFVVGALD 1649
A F T + + RTG + R T G + V G
Sbjct: 397 EHNAASF--------TEDGFYRTGDIV--RLT-RDG---------------YIVVEGRAK 430
Query: 1650 ETIMLRGMRYHPIDIENSVMRAHKKIAECAVF 1681
+ I G + ++EN + AH + + A+
Sbjct: 431 DQINRGGEKVAAEEVEN-HLLAHPAVHDAAMV 461
Score = 48.7 bits (117), Expect = 1e-05
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 807 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 866
+ +L RA+R+ A + I D V + P + + +GA+PV P H
Sbjct: 51 WSYRELDTRADRLAAGFQKL-GIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSH 109
Score = 32.9 bits (76), Expect = 1.2
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 910 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCL 956
+ +L RA+R+ A + I D V + P + +
Sbjct: 51 WSYRELDTRADRLAAGFQKL-GIQQKDRVVVQLPNIKEFFEVIFALF 96
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate
synthetase, isochroismatase...; adenylate-forming
enzymes, ANL superfamily; HET: SVS PNS; 3.10A
{Escherichia coli}
Length = 617
Score = 73.1 bits (180), Expect = 4e-13
Identities = 45/290 (15%), Positives = 81/290 (27%), Gaps = 43/290 (14%)
Query: 112 TLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCAFYGCIFAG 171
L+Y +L + +A +L +K G+ + N F+ + G
Sbjct: 50 QLSYRELNQAADNLACSLR--------RQGIKPGETALVQLGNV--AELYITFFALLKLG 99
Query: 172 IVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKLT 231
+ PV R + + + + + V +
Sbjct: 100 VAPVLALFSHQRSE-----LNAYASQIEPALLIADRQHALFSGDDFLNTFVT--EHSSIR 152
Query: 232 ---------WFVTEHLAKTPKDWAPQPRLTDDTPAYIEY---TTDRDGSVMGVTVTRAAM 279
+ P + D AY + TT G+ + T
Sbjct: 153 VVQLLNDSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTT---GTPKLIPRTHNDY 209
Query: 280 LSHCRALTQACHYTEGENMVCVLDFKRETGL-WHSVLTSVLNGMHAVYIPYALMKVNPAS 338
R + C +T+ +C + + L L G V +
Sbjct: 210 YYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAA----DPSATL 265
Query: 339 WMQMITKYRASV-AVVKSRDLHWGLLATKDH--KDISLSSLRLLLVGDGA 385
+I K++ +V A+V L L+SL+LL VG GA
Sbjct: 266 CFPLIEKHQVNVTALVPP--AVSLWLQALIEGESRAQLASLKLLQVG-GA 312
Score = 49.6 bits (119), Expect = 8e-06
Identities = 73/510 (14%), Positives = 137/510 (26%), Gaps = 122/510 (23%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 1258
L+ +L++ A+ + L + I G+ + +L F+ L +G PV H
Sbjct: 51 LSYRELNQAADNLACSLRRQG-IKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSH 109
Query: 1259 PQNLQTTLPTVRMIVDVSKSVLVLSN------------QNVIKLLKSKEASNVVDIKSWP 1306
+ + L++++ + S +++
Sbjct: 110 ------QRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEH 163
Query: 1307 TILDTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACE 1366
+ D + P + A A+ +AY S TTG I +H R C+
Sbjct: 164 NLQDAINHPAEDFTA--TPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQ 221
Query: 1367 LYPSRHIALCLDPYC---------GLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSA 1417
Y + + L +G +L + + L
Sbjct: 222 FTQQ-------TRYLCAIPAAHNYAMS-SPGSLGVFLAGGTVVLAA----DPSATLCFPL 269
Query: 1418 VSQYRVRDTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFS 1477
+ +++V V + L I L ++ V
Sbjct: 270 IEKHQV--NVT-ALVPPAVSLWLQALIEGESRAQ--LASLKLLQV--------------- 309
Query: 1478 KLFSALGLSP------RAVSTSFGCRVNIAICLQGASSPEPSCVYVDLRALRNDRVSLVE 1531
G + + GC++ Q E Y L +
Sbjct: 310 ------GGARLSATLAARIPAEIGCQL-----QQVFGMAEGLVNYTRLDDSAEKIIHTQ- 357
Query: 1532 RGSPHSLCLLESGKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYFSLYGDESE 1591
G P P +V +A+ E +G + + P+ GY Y
Sbjct: 358 -GYPMC----------PDDEVWVADAEGN-PLPQGEVGRLMTRGPYTFRGY---YKSPQH 402
Query: 1592 YAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDAVFVVGALDET 1651
A F + +G L P G + V G +
Sbjct: 403 NASAF--------DANGFYCSGDLI--SID-PEG---------------YITVQGREKDQ 436
Query: 1652 IMLRGMRYHPIDIENSVMRAHKKIAECAVF 1681
I G + +IEN ++ H + A+
Sbjct: 437 INRGGEKIAAEEIEN-LLLRHPAVIYAALV 465
Score = 48.0 bits (115), Expect = 3e-05
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 807 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 866
L+ +L++ A+ + L + I G+ + +L F+ L +G PV H
Sbjct: 51 LSYRELNQAADNLACSLRRQG-IKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSH 109
Score = 32.6 bits (75), Expect = 1.3
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 910 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCL 956
L+ +L++ A+ + L + I G+ + +L F+ L
Sbjct: 51 LSYRELNQAADNLACSLRRQG-IKPGETALVQLGNVAELYITFFALL 96
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 72.2 bits (176), Expect = 2e-12
Identities = 116/761 (15%), Positives = 216/761 (28%), Gaps = 243/761 (31%)
Query: 1025 YHPIDIENSVMRAH-KKIAECAVFTWTNLLVVVVELDGNESEALDLVPLVTNA----VLE 1079
+H +D E + K I VF V D + + + +++ ++
Sbjct: 4 HHHMDFETGEHQYQYKDILS--VF----EDAFVDNFDCKDVQDM-PKSILSKEEIDHIIM 56
Query: 1080 EHHLIVGVAVVVDPGVVPINSRGEK--QRMHLRDGFLADQLDPIYIWVQSP--------- 1128
+ G + + S+ E+ Q+ F+ + L Y ++ SP
Sbjct: 57 SKDAVSGTLRLFWT----LLSKQEEMVQK------FVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 1129 HNASGYFS----LYGDESEYAQQFSARLVTGNTGELYA--RTGYLGFLRRTSPA------ 1176
Y LY D +A+ +RL + Y R L PA
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRL------QPYLKLRQA----LLELRPAKNVLID 156
Query: 1177 GVAGAPVPPGVSSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGID 1236
GV G+ G + V A + ++ + + L N+ + V + +
Sbjct: 157 GVLGS----GKTWV----ALDVCLSYKVQCKMDF-KIFWLNLKNCNSPETVLEM----LQ 203
Query: 1237 LICAFYGCLYVGAVPVTIRPPHPQN-LQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKE 1295
+ + + + +Q L + +LVL N +++ +
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN------VQNAK 257
Query: 1296 ASNVVDIKSWPTILDTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVT 1355
A N ++ +L T T L+ +H ++
Sbjct: 258 AWNAFNLSC-KILLTTRF------------------------KQVTDFLSAATTTHISLD 292
Query: 1356 SLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWL 1415
+ L P +L ++ +P + NP L
Sbjct: 293 HHSMT------LTPDEVKSL---------LLKYLDCRPQD------LPREVLTTNP-RRL 330
Query: 1416 S----AVSQYRVR-DTFCSYGVMELCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRI 1470
S ++ D + +L T + S+ L+ AE R
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKL-TTIIESSLNVLEP--------------AEYR--- 372
Query: 1471 HLTSAFSKLFSALGLSPRAVSTSFGCRVNI---AICL--QGASSPEPSCVYVDLRALRND 1525
K+F L + P + +I + L + V L
Sbjct: 373 -------KMFDRLSVFPPS--------AHIPTILLSLIWFDVIKSDVMVVVNKLH----- 412
Query: 1526 RVSLVERGSP------HSLCLLESGKL--LPGV-KVIIAN-PETKGQCGDSHLGEIWVQS 1575
+ SLVE+ S+ L KL + + I+ + K D
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD-------LI 465
Query: 1576 PHNASGYFSLY-G---DESEYAQQFSARLVTGNTGELYARTGYLGF------LRRTSPAG 1625
P YF + G E+ ++ L+ R +L F +R S A
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERM----------TLF-RMVFLDFRFLEQKIRHDSTAW 514
Query: 1626 VAGAPVPPGVSKLHDAVFVVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-- 1683
A + ++ L L+ + + D + R I + F
Sbjct: 515 NASGSI---LNTLQQ-------------LKFYKPYICDNDPKYERLVNAILD---FLPKI 555
Query: 1684 -TNLLVVVVELDGNESEALDLVPLV----TNAVLEEHHLIV 1719
NL+ S+ DL+ + A+ EE H V
Sbjct: 556 EENLI---------CSKYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 49.9 bits (118), Expect = 9e-06
Identities = 87/597 (14%), Positives = 155/597 (25%), Gaps = 222/597 (37%)
Query: 233 FVTEHLAKTPKDWAPQPRLTDDTPAYIEY--TTDRDGSVMG-VTVTRAAMLSHCR-ALTQ 288
F+ + + QP + T YIE D V V+R R AL +
Sbjct: 93 FLMSPIKTEQR----QP--SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146
Query: 289 ACHYTEGENMV------C---VL------DFKRETGL-----WHSV-----LTSVLNGMH 323
+N++ + +K + + W ++ +VL +
Sbjct: 147 L---RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 324 AVYIPYALMKVNPASWMQMITKYRASVAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGD 383
+ + N S + + + +++ LL +K ++ LLV
Sbjct: 204 KLL---YQIDPNWTSRSDHSSNIKLRIHSIQAELRR--LLKSKPYE-------NCLLVLL 251
Query: 384 GANPWSLSSCDQFLSVFQSKGLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMS 443
N + + + F K L ++ R V +S
Sbjct: 252 --NVQNAKAWNAFN--LSCKIL----------------LTTRF---KQV------TDFLS 282
Query: 444 GLSYGVVRVDQENSLTSLTLQDCGQVMPGCIMTVVKMDSPSYLCKTDEVGEICVASTGTG 503
+ + +D + +LT DEV + +
Sbjct: 283 AATTTHISLDHHSM--TLT--------------------------PDEVKSLLLKYLDCR 314
Query: 504 SQYWGLPGLSNTTFKVTPLLADGTALSQDTYTRSGLLG-FLGPGGLVFVCGSRDGLMTVT 562
Q LP P LS ++ + RDGL T
Sbjct: 315 PQ--DLP---REVLTTNPR-----RLS--------IIAESI-----------RDGLATWD 345
Query: 563 GRKHNADD----IIATVLAV-EP--MKFIYRGRIAVF------SIRVLRDERICVI-AEQ 608
KH D II + L V EP + ++ R++VF +L +I +
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFD-RLSVFPPSAHIPTILL-----SLIWFDV 399
Query: 609 RPDCSEEESFQWMSRVLQAVD------SIHQVGLYCLALV-------------------- 642
+ L SI +Y V
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIP--SIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 643 --PPNYLPKTPLG-------GIHLSECKR--------------RFLEGNLHPANVLLCPH 679
+ L L G HL + RFLE + +
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 680 TCVTN----LPKPREIHSGNCLAGQCKRR------FLEGNLHPANVLLCPHTCVTNL 726
+ N L + N + +R FL N++ +T + +
Sbjct: 518 GSILNTLQQLKFYKPYICDND--PKYERLVNAILDFLPK--IEENLICSKYTDLLRI 570
Score = 48.3 bits (114), Expect = 2e-05
Identities = 63/426 (14%), Positives = 112/426 (26%), Gaps = 128/426 (30%)
Query: 35 LPEFYEDDDIELEIAANPKD-PNAPKPEGGVMTPAPGESLVVPSGLPRNLEAA------I 87
F ++ D KD + PK +++ + ++ + +
Sbjct: 26 EDAFVDNFDC--------KDVQDMPKS---ILSKEEIDHII---MSKDAVSGTLRLFWTL 71
Query: 88 QRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDR 147
+ V VL N Y L+S + T+ + + + R
Sbjct: 72 LSKQEEMVQKFVEEVLRIN--------YKFLMSP-------IKTEQRQPSMMTRMYIEQR 116
Query: 148 IALVYPNNDPINFLCAFYGCIFAGIVPVPIEVPLTRRDAGSQQI------------GFLL 195
L ND F A Y V P + ++ G
Sbjct: 117 DRL---YNDNQVF--AKY--------NVSRLQPYLKLRQALLELRPAKNVLIDGVLGS-- 161
Query: 196 G-SCDIQVALTSDACL-KGLPKTAAGEVVAFKGWPKL-----TWFVTEHL----AKTPKD 244
G + + D CL + ++ F W L V E L + +
Sbjct: 162 GKTW-----VALDVCLSYKVQCKMDFKI--F--WLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 245 WAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRAAML---------------SHCRAL-TQ 288
W + + + I ++ +L C+ L T
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT- 271
Query: 289 ACHYTEGENMVCVLDFKRET---------GLWH----SVLTSVLNGMHAVYIPYALMKVN 335
T + + L T L S+L L+ +P ++ N
Sbjct: 272 ----TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-CRPQDLPREVLTTN 326
Query: 336 PASWMQMITKYRASVAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGANPWSLSSCDQ 395
P + +I S+ + +W + I SSL +L P
Sbjct: 327 PRR-LSIIA---ESIRDGLATWDNWKHVNCDKLTTIIESSLNVL------EPAEYRKMFD 376
Query: 396 FLSVFQ 401
LSVF
Sbjct: 377 RLSVFP 382
Score = 46.4 bits (109), Expect = 1e-04
Identities = 73/555 (13%), Positives = 156/555 (28%), Gaps = 170/555 (30%)
Query: 1269 VRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSW--------------PTILDTD-D 1313
+ + D+ KS+L S + + ++ SK+A + W +L +
Sbjct: 35 CKDVQDMPKSIL--SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92
Query: 1314 MPKKKLAALYRAPTAEMLAYLDF-SVSTTGMLAGIKMSHAAVTSLCRSMKL---ACELYP 1369
+ R P+ Y++ K + V+ L +KL EL P
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN---VSRLQPYLKLRQALLELRP 149
Query: 1370 SRHIALCLDPYCG-LGFALWVL-SSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTF 1427
++++ + G LG + V + ++ WL+ + +T
Sbjct: 150 AKNVLID-----GVLGSGKTWVALDVCLSYKVQCKMDFKI-----FWLN-LKNCNSPET- 197
Query: 1428 CSYGVME----LCTKGLSGSIPQLKARNIALGCVRTCVVVAEERPRIHLTSAFSKLF--S 1481
V+E L + P +R+ ++ + + R L SK +
Sbjct: 198 ----VLEMLQKLLYQ----IDPNWTSRSDHSSNIKLRIHSIQAELRRLL---KSKPYENC 246
Query: 1482 ALGL----SPRAVST-SFGCRV-----NIAICLQGASSPEPSCVYVD-LRALRNDRVSLV 1530
L L + +A + + C++ + D L A +SL
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQV--------------TDFLSAATTTHISLD 292
Query: 1531 ERGSPHSLCLLESGKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASG----YFSLY 1586
+L E LL +K + C L P S+
Sbjct: 293 HH--SMTLTPDEVKSLL--LKYL--------DCRPQDL-------PREVLTTNPRRLSII 333
Query: 1587 GDESEYAQQFSARLVTGNTGELYARTGYLGFLRRTSPAGVAGAPVPPGVSKLHDAVFV-V 1645
E + A + + KL + +
Sbjct: 334 A---ESIRDGLATW------DNWKHVNC---------------------DKLTTIIESSL 363
Query: 1646 GALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFT--WTNLLVVVVELDGNESEALDL 1703
L+ + + + SV I + + W +++ V + N+ L
Sbjct: 364 NVLEPAEYRK--MFDRL----SVFPPSAHIPT-ILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 1704 VPL-VTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLR-------------DGFLA 1749
V + + + + + V ++ + +H D +
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLE----------NEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 1750 DQLDP---IYVAYNM 1761
LD ++ +++
Sbjct: 467 PYLDQYFYSHIGHHL 481
>3o83_A Peptide arylation enzyme; ligase, adenylation of
2,3-dihydroxybenzoate and transfer to pantetheine
cofactor of BASF; HET: IXN; 1.90A {Acinetobacter
baumannii} PDB: 3o82_A* 3o84_A*
Length = 544
Score = 71.0 bits (175), Expect = 2e-12
Identities = 53/321 (16%), Positives = 102/321 (31%), Gaps = 49/321 (15%)
Query: 79 LPRNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTS 138
L R L +Q + + A + L+Y +L S +A L
Sbjct: 32 LTRILTVGVQSHPHSL-----AIICGE-----RQLSYIELDRLSTNLATRLA-------- 73
Query: 139 ESSLKSGDRIALVYPNNDPINFLCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSC 198
E L GD + PN F F+ + AG+V + + + + +
Sbjct: 74 EKGLGKGDTALVQLPNV--AEFYIVFFALLKAGVVVLNALYSHRQYE-----LNAFIKQI 126
Query: 199 DIQVALTSD--------ACLKGL-PKTAAGEVVAFKGWPKLTWFVTEHLAKTPKDWAPQP 249
++ + S + L + E++ + + + + + +
Sbjct: 127 QPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPAETFVDFS 186
Query: 250 RLTDDTPAYIEY---TTDRDGSVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFKR 306
D A+ + +T G+ + T RA + C ++C L
Sbjct: 187 STPADEVAFFQLSGGST---GTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPH 243
Query: 307 ETGL-WHSVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASV-AVVKSRDLHWGLLA 364
L L + G V P P + +I +++ ++ ++V S L
Sbjct: 244 NFMLSSPGALGVLHAGGCVVMAPNP----EPLNCFSIIQRHQVNMASLVPS--AVIMWLE 297
Query: 365 TKDHKDISLSSLRLLLVGDGA 385
+ SL+LL VG GA
Sbjct: 298 KAAQYKDQIQSLKLLQVG-GA 317
Score = 47.9 bits (115), Expect = 3e-05
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 807 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 866
L+ +L + + + L E+ + GD + P + F+ L G V + H
Sbjct: 56 LSYIELDRLSTNLATRLAEKG-LGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSH 114
Score = 47.9 bits (115), Expect = 3e-05
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPPH 1258
L+ +L + + + L E+ + GD + P + F+ L G V + H
Sbjct: 56 LSYIELDRLSTNLATRLAEKG-LGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSH 114
Score = 32.1 bits (74), Expect = 2.0
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 910 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCL 956
L+ +L + + + L E+ + GD + P + F+ L
Sbjct: 56 LSYIELDRLSTNLATRLAEKG-LGKGDTALVQLPNVAEFYIVFFALL 101
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 67.4 bits (165), Expect = 3e-11
Identities = 77/474 (16%), Positives = 139/474 (29%), Gaps = 131/474 (27%)
Query: 79 LPRNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTS 138
L + I + + + P G TY + S ++A
Sbjct: 63 LHDYIFQNISEFATKP-----CLINGPTGH---VYTYSDVHVISRQIAANF--------H 106
Query: 139 ESSLKSGDRIALVYPNNDPINFLCAFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSC 198
+ + D + L+ PN F+ +F F G T + I +
Sbjct: 107 KLGVNQNDVVMLLLPNC--PEFVLSFLAASFRGATATAANPFFTPAE-----IAKQAKAS 159
Query: 199 DIQVALTSDACLKGLPKTAAGEVV--------AFKGWPKLTWFVTEHLAKTPK--DWAPQ 248
+ ++ +T + + + V P+ TE T + +
Sbjct: 160 NTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDS 219
Query: 249 PRLTDDTPAYIEY---TTDRDGSVMGVTVTRAAMLSH----------CRALTQACHYTEG 295
++ D + Y TT G GV ML+H ++
Sbjct: 220 VEISPDDVVALPYSSGTT---GLPKGV------MLTHKGLVTSVAQQVDGENPNLYFHSD 270
Query: 296 ENMVCVLDFKRETGLWHSVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRAS------ 349
+ ++CVL L +L + G + +P K +++I + + +
Sbjct: 271 DVILCVLPMFHIYALNSIMLCGLRVGAAILIMP----KFEINLLLELIQRCKVTVAPMVP 326
Query: 350 ---VAVVKSRDLHWGLLATKDHKDISLSSLRLLLVGDGANPWSLSSCDQF------LSVF 400
+A+ KS + + D LSS+R++ GA P D +
Sbjct: 327 PIVLAIAKSSET--------EKYD--LSSIRVVKS--GAAPLGKELEDAVNAKFPNAKLG 374
Query: 401 QSKGLRPDAICPCASSSECLTVSVRRPGRAGVNATGRGVLSMSGLSYGVVRVDQENSLTS 460
Q G+ +E V G A + G +
Sbjct: 375 QGYGM-----------TEAGPVLAMSLGFAKEPFPVK---------SG--------A--- 403
Query: 461 LTLQDCGQVMPGCIMTVVKMDSPSYLCKTDEVGEICVASTGTGSQ----YWGLP 510
CG V+ M +V D+ L ++ GEIC+ G Q Y P
Sbjct: 404 -----CGTVVRNAEMKIVDPDTGDSL-SRNQPGEICI----RGHQIMKGYLNNP 447
Score = 61.6 bits (150), Expect = 2e-09
Identities = 37/238 (15%), Positives = 85/238 (35%), Gaps = 20/238 (8%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRPP- 1257
T S +H + ++ A + +N D V L+ P + + +F + GA P
Sbjct: 89 YTYSDVHVISRQIAANF-HKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFF 147
Query: 1258 HPQNLQ--------TTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTIL 1309
P + + T VD K + ++ + ++ + +
Sbjct: 148 TPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELT 207
Query: 1310 DTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHA---AVTSLCRSMKLACE 1366
+ + + ++ +P + + L +S TTG+ G+ ++H + +
Sbjct: 208 QSTTEASEVIDSVEISP--DDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNL 265
Query: 1367 LYPSRHIALCLDPYC-GLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 1423
+ S + LC+ P +L + G +++P E+ L L + + +V
Sbjct: 266 YFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEIN----LLLELIQRCKV 319
Score = 46.6 bits (111), Expect = 8e-05
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 807 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 864
T S +H + ++ A + +N D V L+ P + + +F + GA P
Sbjct: 89 YTYSDVHVISRQIAANF-HKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANP 145
Score = 41.2 bits (97), Expect = 0.004
Identities = 20/127 (15%), Positives = 41/127 (32%), Gaps = 18/127 (14%)
Query: 861 TIRPPHPQNLQTTLPTHQFISEILKWRAASTSEHVIFTLLNSKGSAAQLLTCSQLHKRAE 920
R P +P H + + + + + G + T S +H +
Sbjct: 47 IFRSKLPD---IYIPNHLSLHDYIFQNISEFATKPCLI----NGPTGHVYTYSDVHVISR 99
Query: 921 RVGALLLERAKINTGDHVALIFPPGIDLICAFYGCL-----CCPSNHPTPSPSESSNHAT 975
++ A + +N D V L+ P + + +F +N P +P+E
Sbjct: 100 QIAANF-HKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAAN-PFFTPAE----IA 153
Query: 976 HRQNDSG 982
+ S
Sbjct: 154 KQAKASN 160
Score = 37.7 bits (88), Expect = 0.044
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 1543 SGKLLPGVKVIIANPETKGQCGDSHLGEIWVQSPHNASGYF 1583
G ++ ++ I +P+T + GEI ++ GY
Sbjct: 404 CGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYL 444
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 61.5 bits (150), Expect = 2e-09
Identities = 40/289 (13%), Positives = 91/289 (31%), Gaps = 36/289 (12%)
Query: 103 LDPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLC 162
++ GK + + +L S + A L + L+ GDR+A+V P +
Sbjct: 65 VNGKGK-ELMWNFRELSENSQQAANVL-------SGACGLQRGDRVAVVLPRV--PEWWL 114
Query: 163 AFYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAG--- 219
GCI AG++ +P + + D I + L + + D ++ + A+
Sbjct: 115 VILGCIRAGLIFMPGTIQMKSTD-----ILYRLQMSKAKAIVAGDEVIQEVDTVASECPS 169
Query: 220 --EVVAFKGWPKLTWFVTEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSVMGVTVTRA 277
+ W + L + I +T+ G + +
Sbjct: 170 LRIKLLVSEKSCDGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS 229
Query: 278 AMLSHCRALTQACHYTEGENMVCVLDFKRETGLWHSVLTSVLNGMHAVYIPYALMKVNPA 337
++ + + M + D + S++ G ++ + L K +P
Sbjct: 230 SLGLKAKMDAGWTGLQASDIMWTISDTGWILNILCSLMEPWALG-ACTFV-HLLPKFDPL 287
Query: 338 SWMQMITKYRASV------AVVKSRDLHWGLLATKDHKDISLSSLRLLL 380
++ ++ Y + +L +D L+ +
Sbjct: 288 VILKTLSSYPIKSMMGAPIV--------YRMLLQQDLSSYKFPHLQNCV 328
Score = 49.6 bits (119), Expect = 7e-06
Identities = 39/253 (15%), Positives = 93/253 (36%), Gaps = 27/253 (10%)
Query: 1190 VDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGA 1249
V+ + + +L + +++ +L + GD VA++ P + GC+ G
Sbjct: 65 VNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGL 124
Query: 1250 VPVTIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQ-------NVIKLLKSKEASNVVDI 1302
+ + P +Q + + +SK+ +++ V S +V
Sbjct: 125 IFM------PGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSE 178
Query: 1303 KSWPTILDTDDMPKKKLAALYRAPT-AEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSM 1361
KS L+ + + + T ++ + + F+ T+G+ + S++++ +
Sbjct: 179 KSCDGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMD 238
Query: 1362 KLACELYPSRHIALCL-DPYCGLGFALWVLSSVYS----GHHSILIPPSEVEVNPALWLS 1416
L S I + D G+ L +L S+ G + + +P + L
Sbjct: 239 AGWTGLQASD-IMWTISDT----GWILNILCSLMEPWALG-ACTFVHLLP-KFDPLVILK 291
Query: 1417 AVSQYRVRDTFCS 1429
+S Y ++ +
Sbjct: 292 TLSSYPIK-SMMG 303
Score = 41.1 bits (97), Expect = 0.004
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 1/79 (1%)
Query: 782 KWRAASTSEHVIFTLLNSKGSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPP 841
+A +N KG +L + +++ +L + GD VA++ P
Sbjct: 50 MEKAGKRPPSPALWWVNGKGKELMW-NFRELSENSQQAANVLSGACGLQRGDRVAVVLPR 108
Query: 842 GIDLICAFYGCLYVGAVPV 860
+ GC+ G + +
Sbjct: 109 VPEWWLVILGCIRAGLIFM 127
Score = 34.5 bits (80), Expect = 0.31
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Query: 885 KWRAASTSEHVIFTLLNSKGSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPP 944
+A +N KG +L + +++ +L + GD VA++ P
Sbjct: 50 MEKAGKRPPSPALWWVNGKGKELMW-NFRELSENSQQAANVLSGACGLQRGDRVAVVLPR 108
Query: 945 GIDLICAFYGCL 956
+ GC+
Sbjct: 109 VPEWWLVILGCI 120
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase,
ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina
acetivorans}
Length = 580
Score = 47.2 bits (113), Expect = 4e-05
Identities = 44/307 (14%), Positives = 85/307 (27%), Gaps = 53/307 (17%)
Query: 104 DPNGKLSITLTYGKLLSRSLKVAYTLLTKPINRTSESSLKSGDRIALVYPNNDPINFLCA 163
D G T+ L S K A + + GD + L + +F
Sbjct: 79 DDYGN-EKIFTFKDLKYYSDKAANFF--------VKHGIGKGDYVMLTLKSR--YDFWYC 127
Query: 164 FYGCIFAGIVPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTS---------DACLKGLP 214
G G + VP L RD I + + +++ + D
Sbjct: 128 MLGLHKLGAIAVPATHMLKTRD-----IVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECG 182
Query: 215 KTAAGEVV----AFKGWPKLTWFVTEHLAKTPKDWAPQPRLTDDTPAYIEYT---TDRDG 267
+ +GW + E + +D + ++ G
Sbjct: 183 DIPLKKAKVGGDVLEGWIDFRKELEESSPIFERPTGEVSTKNED-ICLVYFSSGTA---G 238
Query: 268 SVMGVTVTRAAMLSHCRALTQACHYTEGENMVCVLDFKRETGLWHSVLTSVLNGMHAVYI 327
V L H + + V D +W + + G AV++
Sbjct: 239 FPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAG-CAVFV 297
Query: 328 PYALMKVNPASWMQMITKYRASV------AVVKSRDLHWGLLATKDHKDISLSSLRLLL- 380
Y + + ++ +KY + + L +D + S+L+ +
Sbjct: 298 -YDYDRFEAKNMLEKASKYGVTTFCAPPTI--------YRFLIKEDLSHYNFSTLKYAVV 348
Query: 381 VGDGANP 387
G+ NP
Sbjct: 349 AGEPLNP 355
Score = 35.6 bits (83), Expect = 0.15
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 807 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAV--PVT 861
T L +++ ++ I GD+V L D G +GA+ P T
Sbjct: 87 FTFKDLKYYSDKAANFFVKHG-IGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPAT 142
Score = 35.6 bits (83), Expect = 0.15
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 1199 LTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAV--PVT 1253
T L +++ ++ I GD+V L D G +GA+ P T
Sbjct: 87 FTFKDLKYYSDKAANFFVKHG-IGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPAT 142
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 45.7 bits (109), Expect = 1e-04
Identities = 34/168 (20%), Positives = 63/168 (37%), Gaps = 19/168 (11%)
Query: 1197 QLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 1256
Q L+ +L + A R+ L + G VAL ++L+ G L GA + + P
Sbjct: 488 QTLSYRELDEEANRIARRLQKHG-AGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDP 546
Query: 1257 PHPQNLQTTLPTVR---MIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDD 1313
P++ R M+ D S + +L++Q + + + T +
Sbjct: 547 KLPED--------RISYMLAD-SAAACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQA 597
Query: 1314 MPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSM 1361
+ A AY+ ++ TTG G +HA + L + +
Sbjct: 598 ------SDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLVKHV 639
Score = 36.8 bits (86), Expect = 0.076
Identities = 34/223 (15%), Positives = 64/223 (28%), Gaps = 49/223 (21%)
Query: 173 VPVPIEVPLTRRDAGSQQIGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKLTW 232
+PV ++P R I ++L LT + + F
Sbjct: 542 LPVDPKLPEDR-------ISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQTR-- 592
Query: 233 FVTEHLAKTPKDWAPQPRLTDDTPAYIEYTTDRDGSV---MGVTVTRAAMLSHCRALTQA 289
+ P + + PAYI YT+ G+ G T A + +
Sbjct: 593 ------FEEQAS-DPATAIDPNDPAYIMYTS---GTTGKPKGNITTHANIQGLVKH-VDY 641
Query: 290 CHYTEGENM---------VCVLDFKRETGLWHSVLTSVLNGMHAVYIPYALMKVNPASWM 340
+++ + DF S+LN + + +
Sbjct: 642 MAFSDQDTFLSVSNYAFDAFTFDF----------YASMLNAARLIIADEHTLL-DTERLT 690
Query: 341 QMITKYRASVA-VVKSRDLHWGLLATKDHKDISLSSLRLLLVG 382
+I + +V + + LL D + + LR +L G
Sbjct: 691 DLILQENVNVMFATTA---LFNLLT--DAGEDWMKGLRCILFG 728
Score = 32.2 bits (74), Expect = 2.2
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 805 QLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 864
Q L+ +L + A R+ L + G VAL ++L+ G L GA + + P
Sbjct: 488 QTLSYRELDEEANRIARRLQKHG-AGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDP 546
Query: 865 PHPQ 868
P+
Sbjct: 547 KLPE 550
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei
ribosomal peptide synthetase, NRPS, valine adenylation,
LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB:
4dg9_A*
Length = 620
Score = 42.9 bits (102), Expect = 9e-04
Identities = 31/167 (18%), Positives = 49/167 (29%), Gaps = 19/167 (11%)
Query: 1193 RSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPV 1252
R + QL AE++ LLE G + + + I L G +
Sbjct: 47 RDRFGSVDYRQLLDSAEQLSDYLLEHY-PQPGVCLGVYGEYSRESITCLLAILLSGHHYL 105
Query: 1253 TIRPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTD 1312
I P + L+L +
Sbjct: 106 YIDLKQPA------AWNAELCRQVDCRLILDCSTTPTPANG------------LPCVPVR 147
Query: 1313 DMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCR 1359
+P + A+ +AY++FS TTG I +HA +T LC
Sbjct: 148 HLPAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCL 194
Score = 33.6 bits (78), Expect = 0.72
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 1/64 (1%)
Query: 805 QLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGAVPVTIRP 864
+ QL AE++ LLE G + + + I L G + I
Sbjct: 51 GSVDYRQLLDSAEQLSDYLLEHY-PQPGVCLGVYGEYSRESITCLLAILLSGHHYLYIDL 109
Query: 865 PHPQ 868
P
Sbjct: 110 KQPA 113
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal
peptide synthetase, NRPS, adenylation domain,
D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB:
3e7x_A*
Length = 511
Score = 42.5 bits (101), Expect = 0.001
Identities = 25/184 (13%), Positives = 61/184 (33%), Gaps = 24/184 (13%)
Query: 1197 QLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGA--VPVTI 1254
Q LT +L ++++R A + +R + + +I +F G + G +P +
Sbjct: 25 QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIP--V 82
Query: 1255 RPPHPQNLQTTLPTVR---MIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDT 1311
P R +I S + L++ + ++ V +
Sbjct: 83 DLSIPSE--------RIAKIIES-SGAELLIHAAGLSIDAVGQQIQ-TVS-------AEE 125
Query: 1312 DDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSR 1371
+ + + Y+ ++ +TG G+++S A + S + + +
Sbjct: 126 LLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGK 185
Query: 1372 HIAL 1375
Sbjct: 186 IFLN 189
Score = 33.2 bits (77), Expect = 0.84
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 805 QLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGA--VPVTI 862
Q LT +L ++++R A + +R + + +I +F G + G +P +
Sbjct: 25 QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIP--V 82
Query: 863 RPPHPQ 868
P
Sbjct: 83 DLSIPS 88
Score = 30.2 bits (69), Expect = 7.6
Identities = 10/49 (20%), Positives = 22/49 (44%)
Query: 908 QLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCL 956
Q LT +L ++++R A + +R + + +I +F G +
Sbjct: 25 QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSV 73
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis,
NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A
{Neotyphodium lolii}
Length = 562
Score = 41.8 bits (99), Expect = 0.002
Identities = 30/195 (15%), Positives = 67/195 (34%), Gaps = 21/195 (10%)
Query: 1186 GVSSVDTRSAAQLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCL 1245
+ + T +L++ A +V L+ G +A+ + G +
Sbjct: 43 TGFLGSQKIVTEDWTYKKLNETANQVANLI--IHASLHGRAIAVSLDRSLIAFAIIVGIM 100
Query: 1246 YVGA--VPVTIRPPHPQNLQTTLPTVR---MIVDVSKSVLVLSNQNVIKLLKSKEASNVV 1300
G VP I P + R ++ D S++ + N ++ + V+
Sbjct: 101 KSGNTYVP--IEAGLPND--------RKSFLLRD-SRAAMAFVCDNNFDGVELPPETKVL 149
Query: 1301 DIKSWPTILDTDDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRS 1360
D K+ I + + + + AYL ++ +TG G+++S ++S +
Sbjct: 150 DTKNQSFIENLSTQD---TSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDA 206
Query: 1361 MKLACELYPSRHIAL 1375
+ + L
Sbjct: 207 WGKLIGNVAPKSLEL 221
Score = 31.8 bits (73), Expect = 2.6
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 6/72 (8%)
Query: 191 IGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKLTWFVTEHLAKTPKDWAPQPR 250
FLL +A D G+ +V+ K + E+L+
Sbjct: 118 KSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDTKNQSFI-----ENLSTQDTS-DILNN 171
Query: 251 LTDDTPAYIEYT 262
++ AY+ YT
Sbjct: 172 YPENLDAYLLYT 183
Score = 30.7 bits (70), Expect = 6.0
Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 14/101 (13%)
Query: 774 HQFISEILKWRAASTSEH--VIF--TLLNSKGSAAQLLTCSQLHKRAERVGALLLERAKI 829
+I A + E V L S+ + T +L++ A +V L+
Sbjct: 23 SHYIET----WAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLI--IHAS 76
Query: 830 NTGDHVALIFPPGIDLICAFYGCLYVGA--VPVTIRPPHPQ 868
G +A+ + G + G VP I P
Sbjct: 77 LHGRAIAVSLDRSLIAFAIIVGIMKSGNTYVP--IEAGLPN 115
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming
domain, adenylation, D-alanine protein ligase, ATP
complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A*
3dhv_A*
Length = 512
Score = 40.2 bits (95), Expect = 0.007
Identities = 32/235 (13%), Positives = 80/235 (34%), Gaps = 31/235 (13%)
Query: 1197 QLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGA--VPVTI 1254
+T QL + ++ + + + + + ++I F GC+ G +P +
Sbjct: 25 AKITYKQLKEDSDALAHWISSE-YPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIP--V 81
Query: 1255 RPPHPQNLQTTLPTVR---MIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDT 1311
P + R + + S + L+LS V + ++K
Sbjct: 82 DLSIPAD--------RVQRIAEN-SGAKLLLSATAVTVTDLPVRIVSEDNLKDIFFTHKG 132
Query: 1312 DDMPKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSR 1371
+ A + Y+ ++ +TG G+++++ + S + L +
Sbjct: 133 NT------PNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQ 186
Query: 1372 HIALCLDPYCGLGF--ALW-VLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 1423
L P+ F ++ + S+ +G I ++ P +++ Q +
Sbjct: 187 VF-LNQAPFS---FDLSVMDIYPSLVTGGTLWAIDK-DMIARPKDLFASLEQSDI 236
>2icn_B Prolactin-inducible protein; beta-pleated sheet, complex, seminal
fluid; HET: NAG BMA MAN P6G; 3.23A {Homo sapiens} PDB:
3es6_B*
Length = 118
Score = 34.1 bits (78), Expect = 0.089
Identities = 9/111 (8%), Positives = 24/111 (21%), Gaps = 27/111 (24%)
Query: 470 MPGCIM-TVVKMDSPSYLCKTDEVGEICVASTGTGSQYWGLPGLSNTTFKVTPLLADGTA 528
+ C++ + S + C+ + YW
Sbjct: 34 LKECMVVKTYLISSIPLQGAFNYKYTACLCDDNPKTFYWDFYTNRTVQIAAV-----VDV 88
Query: 529 LSQDTYTRSGLLGFLGPGGLVFVCGSRDGLMTVTGRKHNADDIIATVLAVE 579
+ + +C ++ + + I + VE
Sbjct: 89 IRELG-----------------ICPDDAAVIPIKNNR---FYTIEILK-VE 118
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural
genomics, DLTA, ATP-binding, cytoplasm,
nucleotide-binding; 2.41A {Streptococcus pyogenes
serotype M6} PDB: 3lgx_A*
Length = 521
Score = 35.6 bits (83), Expect = 0.16
Identities = 26/167 (15%), Positives = 58/167 (34%), Gaps = 19/167 (11%)
Query: 1197 QLLTCSQLHKRAERVGALLLERAKINTGDHVALIFPPGIDLICAFYGCLYVGA--VPVTI 1254
+ T QL + ++ + A + A + V + D++ F G +P +
Sbjct: 28 ERRTYGQLKRDSDSIAAFIDSLA-LLAKSPVLVFGAQTYDMLATFVALTKSGHAYIP--V 84
Query: 1255 RPPHPQNLQTTLPTVRMIVDVSKSVLVLSNQNVIKLLKSKEASNVVDIKSWPTILDTDDM 1314
+ I++++K L+++ + + + S V + L
Sbjct: 85 DVHSAPE------RILAIIEIAKPSLIIAIEEFPLTI--EGISLVSLSEIESAKLAEMP- 135
Query: 1315 PKKKLAALYRAPTAEMLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSM 1361
+ + Y+ F+ TTG G+++SH + S M
Sbjct: 136 -----YERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWM 177
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE ADP COA; 2.20A {Bacteroides
thetaiotaomicron} PDB: 3s89_A*
Length = 436
Score = 33.8 bits (78), Expect = 0.55
Identities = 15/96 (15%), Positives = 40/96 (41%), Gaps = 9/96 (9%)
Query: 1010 VVGALDETIMLRGMRYHPIDIENSVMRAHKKIA---ECAVFTWTNL--LVVVVELDGNES 1064
+ G D+ +++G+ P+ +E ++ ++ + T N ++V VEL +
Sbjct: 326 IKGRSDDMFIIKGVNIFPMQVE-KILVQFPELGSNYLITLETVNNQDEMIVEVELSDLST 384
Query: 1065 EALDLVPLVTNAVLEEHHLIVGVAV---VVDPGVVP 1097
+ + + ++ + + V +V G +P
Sbjct: 385 DNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLP 420
Score = 33.8 bits (78), Expect = 0.55
Identities = 15/96 (15%), Positives = 40/96 (41%), Gaps = 9/96 (9%)
Query: 1644 VVGALDETIMLRGMRYHPIDIENSVMRAHKKIA---ECAVFTWTNL--LVVVVELDGNES 1698
+ G D+ +++G+ P+ +E ++ ++ + T N ++V VEL +
Sbjct: 326 IKGRSDDMFIIKGVNIFPMQVE-KILVQFPELGSNYLITLETVNNQDEMIVEVELSDLST 384
Query: 1699 EALDLVPLVTNAVLEEHHLIVGVAV---VVDPGVVP 1731
+ + + ++ + + V +V G +P
Sbjct: 385 DNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLP 420
>3jyh_A Dipeptidyl-peptidase 2; structural genomics, structural genomics
consortium, SGC, aminopeptidase, cleavage on PAIR of
basic residues; HET: NAG BMA; 2.19A {Homo sapiens} PDB:
3n0t_A*
Length = 469
Score = 33.4 bits (75), Expect = 0.80
Identities = 11/51 (21%), Positives = 20/51 (39%)
Query: 1104 KQRMHLRDGFLADQLDPIYIWVQSPHNASGYFSLYGDESEYAQQFSARLVT 1154
QR + D F PI+ + + + + + +E A + A LV
Sbjct: 31 PQRFLVSDRFWVRGEGPIFFYTGNEGDVWAFANNSAFVAELAAERGALLVF 81
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia
cenocepacia} PDB: 2y4n_A*
Length = 437
Score = 33.0 bits (76), Expect = 0.91
Identities = 16/96 (16%), Positives = 36/96 (37%), Gaps = 9/96 (9%)
Query: 1010 VVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTN-----LLVVVVELDGNES 1064
+ G D+ +++RG+ P IE + + +A T +L + VE +
Sbjct: 328 ITGRSDDMMIVRGVNVFPTQIE-EQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETA 386
Query: 1065 EALDLVPLVTNAVLEEHHLIVGVAV---VVDPGVVP 1097
+ + A+ + ++GV V+ +
Sbjct: 387 PDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIE 422
Score = 33.0 bits (76), Expect = 0.91
Identities = 16/96 (16%), Positives = 36/96 (37%), Gaps = 9/96 (9%)
Query: 1644 VVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTN-----LLVVVVELDGNES 1698
+ G D+ +++RG+ P IE + + +A T +L + VE +
Sbjct: 328 ITGRSDDMMIVRGVNVFPTQIE-EQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETA 386
Query: 1699 EALDLVPLVTNAVLEEHHLIVGVAV---VVDPGVVP 1731
+ + A+ + ++GV V+ +
Sbjct: 387 PDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIE 422
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics,
PSI-2, protein structure initiative; 1.43A {Bacteroides
vulgatus atcc 8482} PDB: 3lax_A
Length = 109
Score = 31.1 bits (71), Expect = 0.96
Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 1015 DETIMLRGMRYHPIDIENSVMRAHKKIAECAVF----TWTNLLVVVVELDGNESEALDLV 1070
D+ I+L+G+ PI IE +++ + ++ + + + V VEL ++ +
Sbjct: 4 DDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRL 63
Query: 1071 PLVTNAVLEEHHLIVGVAV---VVDPGVVP 1097
+T + + + V +V G +P
Sbjct: 64 QALTREITRQLKDEILVTPRVKLVPKGALP 93
Score = 31.1 bits (71), Expect = 0.96
Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 1649 DETIMLRGMRYHPIDIENSVMRAHKKIAECAVF----TWTNLLVVVVELDGNESEALDLV 1704
D+ I+L+G+ PI IE +++ + ++ + + + V VEL ++ +
Sbjct: 4 DDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRL 63
Query: 1705 PLVTNAVLEEHHLIVGVAV---VVDPGVVP 1731
+T + + + V +V G +P
Sbjct: 64 QALTREITRQLKDEILVTPRVKLVPKGALP 93
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Length = 443
Score = 33.0 bits (76), Expect = 1.0
Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 11/107 (10%)
Query: 1010 VVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTN-----LLVVVVEL--DGN 1062
+ G D+ +++RG+ P IE ++ A ++ T + L + VEL +
Sbjct: 330 ITGRSDDMLIVRGVNVFPSQIE-EIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAA 388
Query: 1063 ESEALDLVPLVTNAVLEEHHLIVGVAV---VVDPGVVPINSRGEKQR 1106
S + + +VGV+ V+ G +P + G+ +R
Sbjct: 389 ASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARR 435
Score = 33.0 bits (76), Expect = 1.0
Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 11/107 (10%)
Query: 1644 VVGALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTN-----LLVVVVEL--DGN 1696
+ G D+ +++RG+ P IE ++ A ++ T + L + VEL +
Sbjct: 330 ITGRSDDMLIVRGVNVFPSQIE-EIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAA 388
Query: 1697 ESEALDLVPLVTNAVLEEHHLIVGVAV---VVDPGVVPINSRGEKQR 1740
S + + +VGV+ V+ G +P + G+ +R
Sbjct: 389 ASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARR 435
>3nwr_A A rubisco-like protein; lyase; HET: KCX; 1.50A {Burkholderia
fungorum}
Length = 432
Score = 32.3 bits (73), Expect = 1.7
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 3/85 (3%)
Query: 1325 APTAEMLAYLDFSV---STTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYC 1381
M + + + M + +A+ SL R+ L + + + + DP
Sbjct: 238 DDLDAMRRHAELVEREGGSCVMASINWCGFSAIQSLRRTTPLVLHAHRNGYGMMSRDPAL 297
Query: 1382 GLGFALWVLSSVYSGHHSILIPPSE 1406
G+ F + SG + +
Sbjct: 298 GMSFQAYQTLWRLSGVDHMHVHGLA 322
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 1.8
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 6/26 (23%)
Query: 81 RNLEAAIQRYGSATYKAPV----ATV 102
+ L+A+++ Y A AP AT+
Sbjct: 23 KKLQASLKLY--ADDSAPALAIKATM 46
Score = 30.7 bits (68), Expect = 2.6
Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 5/20 (25%)
Query: 1317 KKLAA---LYRAP-TAEMLA 1332
KKL A LY A +A LA
Sbjct: 23 KKLQASLKLY-ADDSAPALA 41
Score = 30.3 bits (67), Expect = 3.0
Identities = 6/25 (24%), Positives = 11/25 (44%), Gaps = 11/25 (44%)
Query: 139 ESSLKSGDRIALVY-PNNDP---IN 159
++SLK +Y ++ P I
Sbjct: 26 QASLK-------LYADDSAPALAIK 43
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 31.3 bits (71), Expect = 3.9
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 19 KIQQLLNTLKRPKRRPLPEFY--EDDDIELEIAANPKDPNA 57
I+ L+T +RR P FY +DD+ L+I + K +
Sbjct: 374 MIKSSLSTFLERQRRQFPRFYFLGNDDL-LKIIGSGKHHDQ 413
>2y8c_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; malaria; HET:
DUQ; 2.10A {Plasmodium falciparum} PDB: 1vyq_A*
Length = 173
Score = 30.2 bits (68), Expect = 3.9
Identities = 19/112 (16%), Positives = 32/112 (28%), Gaps = 21/112 (18%)
Query: 68 APGESLVVPSGLPRNLEAAIQRYGSATYKAPVATVLDPNGKLSITLTYGKLLSRS--LKV 125
P + V G+ A + + K +I T L RS K
Sbjct: 40 KPKSTTFVKLGI--KAIALQYKSNYYYKCEKSENKKKDDDKSNIVNTSFLLFPRSSISKT 97
Query: 126 AYTLLTKP---------------INRTSES-SLKSGDRIA-LVYPNNDPINF 160
L N + + +K D++ LV +P++F
Sbjct: 98 PLRLANSIGLIDAGYRGEIIAALDNTSDQEYHIKKNDKLVQLVSFTGEPLSF 149
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain
swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB:
1lgq_A
Length = 116
Score = 29.4 bits (66), Expect = 4.0
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 132 KPINRTSESSLKSGDRIALVYPNNDPINFLCAFY 165
+ + L++GD I LVY N+P + + Y
Sbjct: 75 LKVVKKQTCPLQTGDVIYLVYRKNEPEHNVAYLY 108
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 30.6 bits (69), Expect = 7.1
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 19 KIQQLLNTLKRPKRRPLPEFY--EDDDIELEIAANPKDPNA 57
K+Q+ L +R FY D+D+ LEI N KD
Sbjct: 315 KVQKALGEYLERQRSAFARFYFVGDEDL-LEIIGNSKDIIK 354
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate
forming; HET: PHE AMP; 1.90A {Brevibacillus brevis}
SCOP: e.23.1.1
Length = 563
Score = 30.1 bits (69), Expect = 7.6
Identities = 26/216 (12%), Positives = 59/216 (27%), Gaps = 50/216 (23%)
Query: 191 IGFLLGSCDIQVALTSDACLKGLPKTAAGEVVAFKGWPKLTWFVTEHLAKTPKDWAPQPR 250
I ++L ++ LT + + V +
Sbjct: 128 IQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIKIREGT---------NLHVP 178
Query: 251 LTDDTPAYIEYTTDRDGS------VMGVTVTRAAMLSHCRALTQACHYTEGENM------ 298
AY+ YT+ G+ M + + + + + TE + +
Sbjct: 179 SKSTDLAYVIYTS---GTTGNPKGTM---LEHKGISNLKVFFENSLNVTEKDRIGQFASI 232
Query: 299 ---VCVLDFKRETGLWHSVLTSVLNGMHAVYIPYALMKVNPASWMQMITKYRASVA-VVK 354
V + ++L G I + + + Q I + +V +
Sbjct: 233 SFDASVWEM----------FMALLTGASLYIILKDTIN-DFVKFEQYINQKEITVITLPP 281
Query: 355 SRDLHWGLLATKDHKDISLSSLRLLLVGDGANPWSL 390
+ + L + + S++ L+ A SL
Sbjct: 282 T---YVVHLDPER-----ILSIQTLITAGSATSPSL 309
>2d69_A Ribulose bisphosphate carboxylase; alpha/beta barrel, structural
genomics, NPPSFA, national Pro protein structural and
functional analyses; 1.90A {Pyrococcus horikoshii} SCOP:
c.1.14.1 d.58.9.1 PDB: 2cxe_A 2cwx_A
Length = 430
Score = 29.7 bits (66), Expect = 9.7
Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 6/89 (6%)
Query: 1324 RAPTAEMLAYLDFSVSTTG---MLAGIKMSHAAVTSL---CRSMKLACELYPSRHIALCL 1377
P M + + G M+ + +A+ + + LA + + H A
Sbjct: 228 TGPVNIMEKRAEMVANEGGQYVMIDIVVAGWSALQYMREVTEDLGLAIHAHRAMHAAFTR 287
Query: 1378 DPYCGLGFALWVLSSVYSGHHSILIPPSE 1406
+P G+ ++ G I +
Sbjct: 288 NPRHGITMLALAKAARMIGVDQIHTGTAV 316
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.414
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 27,109,970
Number of extensions: 1705283
Number of successful extensions: 3657
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3502
Number of HSP's successfully gapped: 157
Length of query: 1761
Length of database: 6,701,793
Length adjustment: 107
Effective length of query: 1654
Effective length of database: 3,714,246
Effective search space: 6143362884
Effective search space used: 6143362884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (28.3 bits)