BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1434
(357 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G1E|A Chain A, Crystal Structure Of Integrin Alpha V Beta 3 With
Coil-Coiled Tag
Length = 998
Score = 145 bits (365), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 132/234 (56%), Gaps = 8/234 (3%)
Query: 20 ATKEGPPTDDGSYMGYSVASGFFSGE--SGVAVGIPRGARLLGKVALYT-TNMTNLQNIT 76
AT+ D SY+GYSVA G F+G+ G+PR AR LG V +Y NM++L N T
Sbjct: 209 ATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYDGKNMSSLYNFT 268
Query: 77 GEQLGAYFAYAVTTSXXXXXXXXXXXXXXPLYTNPTNNVGHYETGRIYVVYQGKETYKFR 136
GEQ+ AYF ++V + PL+ + ++ E G++ V Q + + F+
Sbjct: 269 GEQMAAYFGFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQ-RASGDFQ 327
Query: 137 RLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGAREN 196
+G ARFG ++ LGD+++DGF D A+ APY G +++G+VYI++G G
Sbjct: 328 TTKL-NGFEVFARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAV 386
Query: 197 PSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRS 250
PSQI+ E + + +FG+S+ G D+D+N YPDL++GA+ + A + R+
Sbjct: 387 PSQIL---EGQWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVDRAILYRA 437
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 34/171 (19%)
Query: 121 GRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNER 180
G +Y+ Y GK L+ G+ A FG S+ DIN D + D +GAP
Sbjct: 251 GMVYI-YDGK---NMSSLYNFTGEQMAAYFGFSVAAT-DINGDDYADVFIGAP------- 298
Query: 181 GVVYIYHGSPIGARENPSQIITAEEVNFGLQGS-------LTTFGFSLAGGVDLDENQYP 233
+++ GS +E ++ + + Q + FG ++A DLD++ +
Sbjct: 299 --LFMDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNGFEVFARFGSAIAPLGDLDQDGFN 356
Query: 234 DLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAE 284
D+ I A PY G +++G+VYI++G G PSQI+ +
Sbjct: 357 DIAIAA-------------PYGGEDKKGIVYIFNGRSTGLNAVPSQILEGQ 394
>pdb|4G1M|A Chain A, Re-Refinement Of Alpha V Beta 3 Structure
Length = 959
Score = 145 bits (365), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 132/234 (56%), Gaps = 8/234 (3%)
Query: 20 ATKEGPPTDDGSYMGYSVASGFFSGE--SGVAVGIPRGARLLGKVALYT-TNMTNLQNIT 76
AT+ D SY+GYSVA G F+G+ G+PR AR LG V +Y NM++L N T
Sbjct: 209 ATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYDGKNMSSLYNFT 268
Query: 77 GEQLGAYFAYAVTTSXXXXXXXXXXXXXXPLYTNPTNNVGHYETGRIYVVYQGKETYKFR 136
GEQ+ AYF ++V + PL+ + ++ E G++ V Q + + F+
Sbjct: 269 GEQMAAYFGFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQ-RASGDFQ 327
Query: 137 RLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGAREN 196
+G ARFG ++ LGD+++DGF D A+ APY G +++G+VYI++G G
Sbjct: 328 TTKL-NGFEVFARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAV 386
Query: 197 PSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRS 250
PSQI+ E + + +FG+S+ G D+D+N YPDL++GA+ + A + R+
Sbjct: 387 PSQIL---EGQWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVDRAILYRA 437
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 34/171 (19%)
Query: 121 GRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNER 180
G +Y+ Y GK L+ G+ A FG S+ DIN D + D +GAP
Sbjct: 251 GMVYI-YDGK---NMSSLYNFTGEQMAAYFGFSVAAT-DINGDDYADVFIGAP------- 298
Query: 181 GVVYIYHGSPIGARENPSQIITAEEVNFGLQGS-------LTTFGFSLAGGVDLDENQYP 233
+++ GS +E ++ + + Q + FG ++A DLD++ +
Sbjct: 299 --LFMDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNGFEVFARFGSAIAPLGDLDQDGFN 356
Query: 234 DLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAE 284
D+ I A PY G +++G+VYI++G G PSQI+ +
Sbjct: 357 DIAIAA-------------PYGGEDKKGIVYIFNGRSTGLNAVPSQILEGQ 394
>pdb|1JV2|A Chain A, Crystal Structure Of The Extracellular Segment Of Integrin
Alphavbeta3
pdb|1L5G|A Chain A, Crystal Structure Of The Extracellular Segment Of Integrin
Avb3 In Complex With An Arg-Gly-Asp Ligand
pdb|1M1X|A Chain A, Crystal Structure Of The Extracellular Segment Of Integrin
Alpha Vbeta3 Bound To Mn2+
pdb|1U8C|A Chain A, A Novel Adaptation Of The Integrin Psi Domain Revealed
From Its Crystal Structure
Length = 957
Score = 145 bits (365), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 132/234 (56%), Gaps = 8/234 (3%)
Query: 20 ATKEGPPTDDGSYMGYSVASGFFSGE--SGVAVGIPRGARLLGKVALYT-TNMTNLQNIT 76
AT+ D SY+GYSVA G F+G+ G+PR AR LG V +Y NM++L N T
Sbjct: 209 ATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYDGKNMSSLYNFT 268
Query: 77 GEQLGAYFAYAVTTSXXXXXXXXXXXXXXPLYTNPTNNVGHYETGRIYVVYQGKETYKFR 136
GEQ+ AYF ++V + PL+ + ++ E G++ V Q + + F+
Sbjct: 269 GEQMAAYFGFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQ-RASGDFQ 327
Query: 137 RLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGAREN 196
+G ARFG ++ LGD+++DGF D A+ APY G +++G+VYI++G G
Sbjct: 328 TTKL-NGFEVFARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAV 386
Query: 197 PSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRS 250
PSQI+ E + + +FG+S+ G D+D+N YPDL++GA+ + A + R+
Sbjct: 387 PSQIL---EGQWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVDRAILYRA 437
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 34/171 (19%)
Query: 121 GRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNER 180
G +Y+ Y GK L+ G+ A FG S+ DIN D + D +GAP
Sbjct: 251 GMVYI-YDGK---NMSSLYNFTGEQMAAYFGFSVAAT-DINGDDYADVFIGAP------- 298
Query: 181 GVVYIYHGSPIGARENPSQIITAEEVNFGLQGS-------LTTFGFSLAGGVDLDENQYP 233
+++ GS +E ++ + + Q + FG ++A DLD++ +
Sbjct: 299 --LFMDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNGFEVFARFGSAIAPLGDLDQDGFN 356
Query: 234 DLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAE 284
D+ I A PY G +++G+VYI++G G PSQI+ +
Sbjct: 357 DIAIAA-------------PYGGEDKKGIVYIFNGRSTGLNAVPSQILEGQ 394
>pdb|3IJE|A Chain A, Crystal Structure Of The Complete Integrin Alhavbeta3
Ectodomain Plus An Alpha/beta Transmembrane Fragment
Length = 967
Score = 145 bits (365), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 132/234 (56%), Gaps = 8/234 (3%)
Query: 20 ATKEGPPTDDGSYMGYSVASGFFSGE--SGVAVGIPRGARLLGKVALYT-TNMTNLQNIT 76
AT+ D SY+GYSVA G F+G+ G+PR AR LG V +Y NM++L N T
Sbjct: 209 ATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYDGKNMSSLYNFT 268
Query: 77 GEQLGAYFAYAVTTSXXXXXXXXXXXXXXPLYTNPTNNVGHYETGRIYVVYQGKETYKFR 136
GEQ+ AYF ++V + PL+ + ++ E G++ V Q + + F+
Sbjct: 269 GEQMAAYFGFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQ-RASGDFQ 327
Query: 137 RLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGAREN 196
+G ARFG ++ LGD+++DGF D A+ APY G +++G+VYI++G G
Sbjct: 328 TTKL-NGFEVFARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAV 386
Query: 197 PSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRS 250
PSQI+ E + + +FG+S+ G D+D+N YPDL++GA+ + A + R+
Sbjct: 387 PSQIL---EGQWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVDRAILYRA 437
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 34/171 (19%)
Query: 121 GRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNER 180
G +Y+ Y GK L+ G+ A FG S+ DIN D + D +GAP
Sbjct: 251 GMVYI-YDGK---NMSSLYNFTGEQMAAYFGFSVAAT-DINGDDYADVFIGAP------- 298
Query: 181 GVVYIYHGSPIGARENPSQIITAEEVNFGLQGS-------LTTFGFSLAGGVDLDENQYP 233
+++ GS +E ++ + + Q + FG ++A DLD++ +
Sbjct: 299 --LFMDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNGFEVFARFGSAIAPLGDLDQDGFN 356
Query: 234 DLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAE 284
D+ I A PY G +++G+VYI++G G PSQI+ +
Sbjct: 357 DIAIAA-------------PYGGEDKKGIVYIFNGRSTGLNAVPSQILEGQ 394
>pdb|3VI3|A Chain A, Crystal Structure Of Alpha5beta1 Integrin Headpiece
(Ligand-Free Form)
pdb|3VI3|C Chain C, Crystal Structure Of Alpha5beta1 Integrin Headpiece
(Ligand-Free Form)
pdb|3VI4|A Chain A, Crystal Structure Of Alpha5beta1 Integrin Headpiece In
Complex With Rgd Peptide
pdb|3VI4|C Chain C, Crystal Structure Of Alpha5beta1 Integrin Headpiece In
Complex With Rgd Peptide
Length = 632
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 103/333 (30%), Positives = 157/333 (47%), Gaps = 33/333 (9%)
Query: 21 TKEGPPTDDGSYMGYSVASGFFSGES--GVAVGIPRGARLLGKVALYT-TNMTNLQNITG 77
T++ D SY+GYSVA G FSG+ G+P+G G V + +++ +L N +G
Sbjct: 219 TRQASSIYDDSYLGYSVAVGEFSGDDTEDFVAGVPKGNLTYGYVTILNGSDIRSLYNFSG 278
Query: 78 EQLGAYFAYAVTTSXXXXXXXXXXXXXXPLYTNPTNNVGHYETGRIYVVYQGKETYKFRR 137
EQ+ +YF YAV + PL + T + E GR+YV Q +
Sbjct: 279 EQMASYFGYAVAATDVNGDGLDDLLVGAPLLMDRTPDGRPQEVGRVYVYLQHPAGIEPTP 338
Query: 138 LHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENP 197
T G + RFG SL LGD+++DG+ D A+GAP+ G ++GVV+++ G P G P
Sbjct: 339 TLTLTGHDEFGRFGSSLTPLGDLDQDGYNDVAIGAPFGGETQQGVVFVFPGGPGGLGSKP 398
Query: 198 SQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDG- 256
SQ++ + + + FG +L GG DLD N YPDL++G++ + A V R
Sbjct: 399 SQVL---QPLWAASHTPDFFGSALRGGRDLDGNGYPDLIVGSFGVDKAVVYRGRPIVSAS 455
Query: 257 -----------PNERGVVYIYHGSPIGARE-----NPSQIITAEEVNFGLQELNVQILLD 300
P ER G+P+ N S A+ + F V++ LD
Sbjct: 456 ASLTIFPAMFNPEERSCS--LEGNPVACINLSFCLNASGKHVADSIGF-----TVELQLD 508
Query: 301 SKKPKS--PRMFFLSDEGKNVINQTLLLIKGTQ 331
+K K R FL+ + + QTLL+ G +
Sbjct: 509 WQKQKGGVRRALFLASR-QATLTQTLLIQNGAR 540
>pdb|3FCS|A Chain A, Structure Of Complete Ectodomain Of Integrin Aiibb3
pdb|3FCS|C Chain C, Structure Of Complete Ectodomain Of Integrin Aiibb3
Length = 959
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/299 (30%), Positives = 137/299 (45%), Gaps = 27/299 (9%)
Query: 32 YMGYSVASGFFSGE---SGVAVGIPRGARLLGKVALYTTNMTNLQNITGEQLGAYFAYAV 88
Y GYSVA G F G+ + VG P + LG V + + L + GEQ+ +YF ++V
Sbjct: 234 YWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILDSYYQRLHRLRGEQMASYFGHSV 293
Query: 89 TTSXXXXXXXXXXXXXXPLYTNPTNNVGHYETGRIYVVYQGKETYKF---RRLHTRDGKN 145
+ PLY + E GR+Y+ Q + + L T G
Sbjct: 294 AVTDVNGDGRHDLLVGAPLYMESRADRKLAEVGRVYLFLQPRGPHALGAPSLLLT--GTQ 351
Query: 146 SKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEE 205
RFG ++ LGD+++DG+ D AV APY GP+ RG V ++ G G R PSQ++ +
Sbjct: 352 LYGRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLRSRPSQVLDSPF 411
Query: 206 VNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDG--------- 256
+ + FGFSL G VD+D+N YPDL++GAY +N V R+
Sbjct: 412 ------PTGSAFGFSLRGAVDIDDNGYPDLIVGAYGANQVAVYRAQPVVKASVQLLVQDS 465
Query: 257 --PNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQ-ELNVQILLDSKKPKSPRMFFL 312
P + V +P+ N + A N + LN ++ LD +KP+ R L
Sbjct: 466 LNPAVKSCVLPQTKTPVSCF-NIQMCVGATGHNIPQKLSLNAELQLDRQKPRQGRRVLL 523
>pdb|3FCU|A Chain A, Structure Of Headpiece Of Integrin Aiibb3 In Open
Conformation
pdb|3FCU|C Chain C, Structure Of Headpiece Of Integrin Aiibb3 In Open
Conformation
pdb|3FCU|E Chain E, Structure Of Headpiece Of Integrin Aiibb3 In Open
Conformation
pdb|3NID|A Chain A, The Closed Headpiece Of Integrin Alphaiib Beta3 And Its
Complex With An Alpahiib Beta3 -Specific Antagonist That
Does Not Induce Opening
pdb|3NID|C Chain C, The Closed Headpiece Of Integrin Alphaiib Beta3 And Its
Complex With An Alpahiib Beta3 -Specific Antagonist That
Does Not Induce Opening
pdb|3NIF|A Chain A, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
pdb|3NIF|C Chain C, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
pdb|3NIG|A Chain A, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
pdb|3NIG|C Chain C, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
pdb|3T3M|A Chain A, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
pdb|3T3M|C Chain C, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
pdb|3T3P|A Chain A, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
pdb|3T3P|C Chain C, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
Length = 457
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 114/225 (50%), Gaps = 14/225 (6%)
Query: 32 YMGYSVASGFFSGE---SGVAVGIPRGARLLGKVALYTTNMTNLQNITGEQLGAYFAYAV 88
Y GYSVA G F G+ + VG P + LG V + + L + GEQ+ +YF ++V
Sbjct: 234 YWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILDSYYQRLHRLRGEQMASYFGHSV 293
Query: 89 TTSXXXXXXXXXXXXXXPLYTNPTNNVGHYETGRIYVVYQGKETYKF---RRLHTRDGKN 145
+ PLY + E GR+Y+ Q + + L T G
Sbjct: 294 AVTDVNGDGRHDLLVGAPLYMESRADRKLAEVGRVYLFLQPRGPHALGAPSLLLT--GTQ 351
Query: 146 SKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEE 205
RFG ++ LGD+++DG+ D AV APY GP+ RG V ++ G G R PSQ++ +
Sbjct: 352 LYGRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLRSRPSQVLDSPF 411
Query: 206 VNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRS 250
+ + FGFSL G VD+D+N YPDL++GAY +N V R+
Sbjct: 412 P------TGSAFGFSLRGAVDIDDNGYPDLIVGAYGANQVAVYRA 450
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 31/156 (19%)
Query: 135 FRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPN-------ERGVVYIYH 187
++RLH G+ + FG S+ + D+N DG D VGAP + E G VY++
Sbjct: 274 YQRLHRLRGEQMASYFGHSVA-VTDVNGDGRHDLLVGAPLYMESRADRKLAEVGRVYLFL 332
Query: 188 GSPIG--ARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTA 245
P G A PS ++T ++ FG ++A DLD + Y D+ +
Sbjct: 333 -QPRGPHALGAPSLLLTGTQL-------YGRFGSAIAPLGDLDRDGYNDIAV-------- 376
Query: 246 FVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQII 281
APY GP+ RG V ++ G G R PSQ++
Sbjct: 377 -----AAPYGGPSGRGQVLVFLGQSEGLRSRPSQVL 407
>pdb|2VC2|A Chain A, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece Bound To
Antagonist L-739758
pdb|2VDK|A Chain A, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece
pdb|2VDL|A Chain A, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece
pdb|2VDM|A Chain A, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece Bound To
Antagonist Tirofiban
pdb|2VDN|A Chain A, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece Bound To
Antagonist Eptifibatide
pdb|2VDO|A Chain A, Integrin Alphaiibbeta3 Headpiece Bound To Fibrinogen Gamma
Chain Peptide, Hhlggakqagdv
pdb|2VDP|A Chain A, Integrin Alphaiibbeta3 Headpiece Bound To Fibrinogen Gamma
Chain Peptide,Lggakqagdv
pdb|2VDQ|A Chain A, Integrin Alphaiibbeta3 Headpiece Bound To A Chimeric
Fibrinogen Gamma Chain Peptide, Hhlggakqrgdv
pdb|2VDR|A Chain A, Integrin Alphaiibbeta3 Headpiece Bound To A Chimeric
Fibrinogen Gamma Chain Peptide, Lggakqrgdv
Length = 452
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 114/225 (50%), Gaps = 14/225 (6%)
Query: 32 YMGYSVASGFFSGE---SGVAVGIPRGARLLGKVALYTTNMTNLQNITGEQLGAYFAYAV 88
Y GYSVA G F G+ + VG P + LG V + + L + GEQ+ +YF ++V
Sbjct: 234 YWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILDSYYQRLHRLRGEQMASYFGHSV 293
Query: 89 TTSXXXXXXXXXXXXXXPLYTNPTNNVGHYETGRIYVVYQGKETYKF---RRLHTRDGKN 145
+ PLY + E GR+Y+ Q + + L T G
Sbjct: 294 AVTDVNGDGRHDLLVGAPLYMESRADRKLAEVGRVYLFLQPRGPHALGAPSLLLT--GTQ 351
Query: 146 SKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEE 205
RFG ++ LGD+++DG+ D AV APY GP+ RG V ++ G G R PSQ++ +
Sbjct: 352 LYGRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLRSRPSQVLDSPF 411
Query: 206 VNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRS 250
+ + FGFSL G VD+D+N YPDL++GAY +N V R+
Sbjct: 412 P------TGSAFGFSLRGAVDIDDNGYPDLIVGAYGANQVAVYRA 450
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 31/156 (19%)
Query: 135 FRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPN-------ERGVVYIYH 187
++RLH G+ + FG S+ + D+N DG D VGAP + E G VY++
Sbjct: 274 YQRLHRLRGEQMASYFGHSVA-VTDVNGDGRHDLLVGAPLYMESRADRKLAEVGRVYLFL 332
Query: 188 GSPIG--ARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTA 245
P G A PS ++T ++ FG ++A DLD + Y D+ +
Sbjct: 333 -QPRGPHALGAPSLLLTGTQL-------YGRFGSAIAPLGDLDRDGYNDIAV-------- 376
Query: 246 FVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQII 281
APY GP+ RG V ++ G G R PSQ++
Sbjct: 377 -----AAPYGGPSGRGQVLVFLGQSEGLRSRPSQVL 407
>pdb|1TYE|A Chain A, Structural Basis For Allostery In Integrins And Binding Of
Ligand- Mimetic Therapeutics To The Platelet Receptor
For Fibrinogen
pdb|1TYE|C Chain C, Structural Basis For Allostery In Integrins And Binding Of
Ligand- Mimetic Therapeutics To The Platelet Receptor
For Fibrinogen
pdb|1TYE|E Chain E, Structural Basis For Allostery In Integrins And Binding Of
Ligand- Mimetic Therapeutics To The Platelet Receptor
For Fibrinogen
Length = 452
Score = 124 bits (311), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 113/225 (50%), Gaps = 14/225 (6%)
Query: 32 YMGYSVASGFFSGE---SGVAVGIPRGARLLGKVALYTTNMTNLQNITGEQLGAYFAYAV 88
Y GYSVA G F G+ + VG P + LG V + + L + EQ+ +YF ++V
Sbjct: 234 YWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILDSYYQRLHRLRAEQMASYFGHSV 293
Query: 89 TTSXXXXXXXXXXXXXXPLYTNPTNNVGHYETGRIYVVYQGKETYKF---RRLHTRDGKN 145
+ PLY + E GR+Y+ Q + + L T G
Sbjct: 294 AVTDVNGDGRHDLLVGAPLYMESRADRKLAEVGRVYLFLQPRGPHALGAPSLLLT--GTQ 351
Query: 146 SKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEE 205
RFG ++ LGD+++DG+ D AV APY GP+ RG V ++ G G R PSQ++ +
Sbjct: 352 LYGRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLRSRPSQVLDSPF 411
Query: 206 VNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRS 250
+ + FGFSL G VD+D+N YPDL++GAY +N V R+
Sbjct: 412 P------TGSAFGFSLRGAVDIDDNGYPDLIVGAYGANQVAVYRA 450
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 31/156 (19%)
Query: 135 FRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPN-------ERGVVYIYH 187
++RLH + + FG S+ + D+N DG D VGAP + E G VY++
Sbjct: 274 YQRLHRLRAEQMASYFGHSVA-VTDVNGDGRHDLLVGAPLYMESRADRKLAEVGRVYLFL 332
Query: 188 GSPIG--ARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTA 245
P G A PS ++T ++ FG ++A DLD + Y D+ +
Sbjct: 333 -QPRGPHALGAPSLLLTGTQL-------YGRFGSAIAPLGDLDRDGYNDIAV-------- 376
Query: 246 FVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQII 281
APY GP+ RG V ++ G G R PSQ++
Sbjct: 377 -----AAPYGGPSGRGQVLVFLGQSEGLRSRPSQVL 407
>pdb|3V4P|A Chain A, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1
pdb|3V4P|C Chain C, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1
pdb|3V4V|A Chain A, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1 And Ro0505376
pdb|3V4V|C Chain C, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1 And Ro0505376
Length = 597
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 156/349 (44%), Gaps = 48/349 (13%)
Query: 30 GSYMGYSVASGFFSGESGVAV--GIPRGARLLGKVALYTTN---MTNLQNITGEQLGAYF 84
GSY+GYSV +G F + V G P+ ++ GK +++ + + L + G++LG+YF
Sbjct: 215 GSYLGYSVGAGHFRSQHTTEVVGGAPQHEQI-GKAYIFSIDEKELNILHEMKGKKLGSYF 273
Query: 85 AYAVTTSXXXXXXXXXXXXXXPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGK 144
+V P+ + E GR++V + T
Sbjct: 274 GASVCAVDLNADGFSDLLVGAPMQSTIR------EEGRVFVYINSGSGAVMNAMETNLVG 327
Query: 145 NSK--ARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIIT 202
+ K ARFG S+ NLGDI+ DGF D A+GAP + + +G +YIY+G G SQ I
Sbjct: 328 SDKYAARFGESIVNLGDIDNDGFEDVAIGAPQE-DDLQGAIYIYNGRADGISSTFSQRIE 386
Query: 203 AEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLR---------STAP 253
+++ SL+ FG S++G +D D N Y D+ +GA+ S++A +LR S +
Sbjct: 387 GLQIS----KSLSMFGQSISGQIDADNNGYVDVAVGAFRSDSAVLLRTRPVVIVDASLSH 442
Query: 254 YDGPNERGVVYIYHGSP-----------IGARENPSQIITAEEVNFGLQELNVQILLDSK 302
+ N + +G P +E P I+ N+ + ++ K
Sbjct: 443 PESVNRTKFDCVENGWPSVCIDLTLCFSYKGKEVPGYIVLF---------YNMSLDVNRK 493
Query: 303 KPKSPRMFFLSDEGKNVINQTLLLIKGTQFCKSTVDMVCEAERPLCTPI 351
PR +F S+ +VI ++ + C++ + + R + TPI
Sbjct: 494 AESPPRFYFSSNGTSDVITGSIQVSSREANCRTHQAFMRKDVRDILTPI 542
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 104/264 (39%), Gaps = 42/264 (15%)
Query: 48 VAVGIPRGARLLGKVALYTTNMTNLQNITGEQ----LGAYFAYAVTTSXXXXXXXXXXXX 103
+ +G P + G + +Y + +Q G+Y Y+V
Sbjct: 178 IVMGAPGSSYWTGSLFVYNITTNKYKAFLDKQNQVKFGSYLGYSVGAGHFRSQHTTEVVG 237
Query: 104 XXPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKD 163
P H + G+ Y+ + + LH GK + FG S+C + D+N D
Sbjct: 238 GAPQ---------HEQIGKAYIF--SIDEKELNILHEMKGKKLGSYFGASVCAV-DLNAD 285
Query: 164 GFGDFAVGAPYDGP-NERGVVYIYHGSPIGARENPSQIITAEEVNF-GLQGSLTTFGFSL 221
GF D VGAP E G V++Y S GA ++ A E N G FG S+
Sbjct: 286 GFSDLLVGAPMQSTIREEGRVFVYINSGSGA------VMNAMETNLVGSDKYAARFGESI 339
Query: 222 AGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQII 281
D+D + + D+ IGA + + + +G +YIY+G G SQ I
Sbjct: 340 VNLGDIDNDGFEDVAIGAPQED--------------DLQGAIYIYNGRADGISSTFSQRI 385
Query: 282 TAEEVNFGL----QELNVQILLDS 301
+++ L Q ++ QI D+
Sbjct: 386 EGLQISKSLSMFGQSISGQIDADN 409
>pdb|3K6S|A Chain A, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|C Chain C, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|E Chain E, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|G Chain G, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K71|A Chain A, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|C Chain C, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|E Chain E, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|G Chain G, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K72|A Chain A, Structure Of Integrin Alphax Beta2
pdb|3K72|C Chain C, Structure Of Integrin Alphax Beta2
Length = 1095
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 99/217 (45%), Gaps = 21/217 (9%)
Query: 31 SYMGYSVASGFFSGESGVAVGIPRGARLLGKVALYTTNMTNLQ---NITGEQLGAYF-AY 86
SY+GYS + G + +G PR + GK ++T + +TG Q+G+YF A
Sbjct: 384 SYLGYSTELALWKGVQSLVLGAPR-YQHTGKAVIFTQVSRQWRMKAEVTGTQIGSYFGAS 442
Query: 87 AVTTSXXXXXXXXXXXXXXPLYTNPTNNVGHYETGRIYV--VYQGKETYKFRRLHTRDGK 144
+ P Y T G++ V + +G + + +
Sbjct: 443 LCSVDVDSDGSTDLVLIGAPHYYEQTRG------GQVSVCPLPRGWRRWWCDAVLYGEQG 496
Query: 145 NSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENP--SQIIT 202
+ RFG +L LGD+N D D +GAP + N RG VY++HG +G +P SQ I
Sbjct: 497 HPWGRFGAALTVLGDVNGDKLTDVVIGAPGEEEN-RGAVYLFHGV-LGPSISPSHSQRIA 554
Query: 203 AEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGA 239
+++ LQ FG +L+GG DL ++ DL +GA
Sbjct: 555 GSQLSSRLQ----YFGQALSGGQDLTQDGLVDLAVGA 587
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 27/179 (15%)
Query: 117 HYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFA-VGAPYD 175
+ TG+ + Q ++ + T G + FG SLC++ D++ DG D +GAP+
Sbjct: 408 YQHTGKAVIFTQVSRQWRMKAEVT--GTQIGSYFGASLCSV-DVDSDGSTDLVLIGAPHY 464
Query: 176 GPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGS-LTTFGFSLAGGVDLDENQYPD 234
RG P G R + V +G QG FG +L D++ ++ D
Sbjct: 465 YEQTRGGQVSVCPLPRGWRR-----WWCDAVLYGEQGHPWGRFGAALTVLGDVNGDKLTD 519
Query: 235 LVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENP--SQIITAEEVNFGLQ 291
+VIGA P + N RG VY++HG +G +P SQ I +++ LQ
Sbjct: 520 VVIGA-------------PGEEEN-RGAVYLFHGV-LGPSISPSHSQRIAGSQLSSRLQ 563
>pdb|1OAT|A Chain A, Ornithine Aminotransferase
pdb|1OAT|B Chain B, Ornithine Aminotransferase
pdb|1OAT|C Chain C, Ornithine Aminotransferase
pdb|2OAT|A Chain A, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|B Chain B, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|C Chain C, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
Length = 439
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 21/163 (12%)
Query: 179 ERGVVYIYHGSPIGARENPSQ---IITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDL 235
E GVV G +G RE ++ + A+E+ GL + G LA VD EN PD+
Sbjct: 235 EAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLART----GRWLA--VDY-ENVRPDI 287
Query: 236 VI-------GAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNF 288
V+ G Y + P E G Y G+P+G R + + EE N
Sbjct: 288 VLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTY--GGNPLGCRVAIAALEVLEEENL 345
Query: 289 GLQELNVQILLDSKKPKSPRMFFLSDEGKNVINQTLLLIKGTQ 331
+ I+L ++ K P + GK ++N ++IK T+
Sbjct: 346 AENADKLGIILRNELMKLPSDVVTAVRGKGLLNA--IVIKETK 386
>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|B Chain B, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|C Chain C, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|1GBN|A Chain A, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|B Chain B, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|C Chain C, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
Length = 402
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 21/163 (12%)
Query: 179 ERGVVYIYHGSPIGARENPSQ---IITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDL 235
E GVV G +G RE ++ + A+E+ GL + G LA VD EN PD+
Sbjct: 198 EAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLART----GRWLA--VDY-ENVRPDI 250
Query: 236 VI-------GAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNF 288
V+ G Y + P E G Y G+P+G R + + EE N
Sbjct: 251 VLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTY--GGNPLGCRVAIAALEVLEEENL 308
Query: 289 GLQELNVQILLDSKKPKSPRMFFLSDEGKNVINQTLLLIKGTQ 331
+ I+L ++ K P + GK ++N ++IK T+
Sbjct: 309 AENADKLGIILRNELMKLPSDVVTAVRGKGLLNA--IVIKETK 349
>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|B Chain B, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|C Chain C, Ornithine Aminotransferase Mutant Y85i
Length = 439
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 21/163 (12%)
Query: 179 ERGVVYIYHGSPIGARENPSQ---IITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDL 235
E GVV G +G RE ++ + A+E+ GL + G LA VD EN PD+
Sbjct: 235 EAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLART----GRWLA--VDY-ENVRPDI 287
Query: 236 VI-------GAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNF 288
V+ G Y + P E G Y G+P+G R + + EE N
Sbjct: 288 VLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTY--GGNPLGCRVAIAALEVLEEENL 345
Query: 289 GLQELNVQILLDSKKPKSPRMFFLSDEGKNVINQTLLLIKGTQ 331
+ I+L ++ K P + GK ++N ++IK T+
Sbjct: 346 AENADKLGIILRNELMKLPSDVVTAVRGKGLLNA--IVIKETK 386
>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|B Chain B, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|C Chain C, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
Length = 439
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 21/163 (12%)
Query: 179 ERGVVYIYHGSPIGARENPSQ---IITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDL 235
E GVV G +G RE ++ + A+E+ GL + G LA VD EN PD+
Sbjct: 235 EAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLART----GRWLA--VDY-ENVRPDI 287
Query: 236 VI-------GAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNF 288
V+ G Y + P E Y G+P+G R + + EE N
Sbjct: 288 VLLGKALSGGLYPVSAVLCDDDIMLTIKPGEH--FSTYGGNPLGCRVAIAALEVLEEENL 345
Query: 289 GLQELNVQILLDSKKPKSPRMFFLSDEGKNVINQTLLLIKGTQ 331
+ I+L ++ K P + GK ++N ++IK T+
Sbjct: 346 AENADKLGIILRNELMKLPSDVVTAVRGKGLLNA--IVIKETK 386
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|B Chain B, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|C Chain C, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|D Chain D, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
Length = 113
Score = 28.5 bits (62), Expect = 5.5, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 197 PSQIITAE----EVNFGLQGSLTTFGFSLAGGVDLDENQYP 233
P Q +TA E++ QG GFS+ GG+D D +Q P
Sbjct: 6 PGQPVTAVVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNP 46
>pdb|2KPK|A Chain A, Magi-1 Pdz1
pdb|2KPL|A Chain A, Magi-1 Pdz1 E6CT
Length = 129
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 188 GSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDE-NQYPDLVI-------GA 239
G P R NPS++ + ++ L+ S FGF++ GG + DE Q LV+ G
Sbjct: 4 GKPFFTR-NPSEL-KGKFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGK 61
Query: 240 YESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGA 273
E+ V + G VV I+ PIGA
Sbjct: 62 METGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGA 95
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DIW|B Chain B, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DJ1|A Chain A, Crystal Structure Of Tip-1 Wild Type
pdb|3DJ1|B Chain B, Crystal Structure Of Tip-1 Wild Type
Length = 124
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 188 GSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYP 233
G P+ A ++ E++ QG GFS+ GG+D D +Q P
Sbjct: 6 GQPVTA------VVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNP 45
>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|3GJ9|B Chain B, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|2L4S|A Chain A, Promiscuous Binding At The Crossroads Of Numerous Cancer
Pathways: Insight From The Binding Of Gip With
Glutaminase L
pdb|2L4T|A Chain A, GipGLUTAMINASE L PEPTIDE COMPLEX
Length = 124
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 188 GSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYP 233
G P+ A ++ E++ QG GFS+ GG+D D +Q P
Sbjct: 6 GQPVTA------VVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNP 45
>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein
Length = 124
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 188 GSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYP 233
G P+ A ++ E++ QG GFS+ GG+D D +Q P
Sbjct: 6 GQPVTA------VVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNP 45
>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
pdb|3SFJ|C Chain C, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
Length = 104
Score = 27.7 bits (60), Expect = 9.0, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 198 SQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYP 233
+ ++ E++ QG GFS+ GG+D D +Q P
Sbjct: 2 TAVVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNP 37
>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E3B|B Chain B, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 102
Score = 27.7 bits (60), Expect = 9.8, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 211 QGSLTTFGFSLAGGVDLDENQYP 233
QG GFS+ GG+D D +Q P
Sbjct: 13 QGENLILGFSIGGGIDQDPSQNP 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,101,708
Number of Sequences: 62578
Number of extensions: 494697
Number of successful extensions: 1065
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 962
Number of HSP's gapped (non-prelim): 42
length of query: 357
length of database: 14,973,337
effective HSP length: 100
effective length of query: 257
effective length of database: 8,715,537
effective search space: 2239893009
effective search space used: 2239893009
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)