Query psy1434
Match_columns 357
No_of_seqs 298 out of 2224
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 17:25:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1434.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1434hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3637|consensus 100.0 1.6E-64 3.6E-69 540.5 29.2 329 3-356 234-598 (1030)
2 KOG3637|consensus 100.0 6.1E-35 1.3E-39 313.2 24.2 231 29-291 203-445 (1030)
3 smart00191 Int_alpha Integrin 98.9 1.6E-09 3.5E-14 77.9 5.0 47 147-193 2-49 (58)
4 PF08441 Integrin_alpha2: Inte 98.9 1.2E-08 2.6E-13 103.1 10.4 93 250-356 1-122 (457)
5 smart00191 Int_alpha Integrin 98.7 1.3E-08 2.9E-13 73.1 4.7 45 81-131 2-47 (58)
6 PF01839 FG-GAP: FG-GAP repeat 98.6 5.8E-08 1.3E-12 61.8 4.4 34 150-186 1-34 (34)
7 PF13517 VCBS: Repeat domain i 98.5 3.4E-07 7.3E-12 66.1 6.2 61 92-170 1-61 (61)
8 PF01839 FG-GAP: FG-GAP repeat 98.5 1.8E-07 3.9E-12 59.6 3.6 34 84-126 1-34 (34)
9 PF13517 VCBS: Repeat domain i 98.3 4.8E-07 1E-11 65.3 2.7 61 159-237 1-61 (61)
10 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.00025 5.5E-09 57.3 8.6 101 86-245 3-108 (111)
11 PF14312 FG-GAP_2: FG-GAP repe 96.8 0.0026 5.7E-08 43.9 4.4 36 144-186 12-49 (49)
12 PF14312 FG-GAP_2: FG-GAP repe 96.6 0.0051 1.1E-07 42.4 5.1 39 77-126 11-49 (49)
13 PF14783 BBS2_Mid: Ciliary BBS 95.9 0.14 3.1E-06 41.5 10.8 28 36-68 4-33 (111)
14 KOG4550|consensus 95.0 0.17 3.7E-06 49.8 9.6 127 86-239 142-272 (606)
15 KOG4550|consensus 93.7 0.69 1.5E-05 45.8 10.6 76 82-170 193-270 (606)
16 PF14779 BBS1: Ciliary BBSome 69.3 27 0.00058 32.7 8.1 82 84-190 16-98 (257)
17 PF12256 TcdB_toxin_midN: Inse 67.4 5.5 0.00012 34.8 3.1 20 156-175 28-47 (175)
18 PF14779 BBS1: Ciliary BBSome 65.8 20 0.00044 33.5 6.6 82 152-253 18-100 (257)
19 PF12256 TcdB_toxin_midN: Inse 63.0 7.8 0.00017 33.9 3.3 23 85-107 24-46 (175)
20 KOG2055|consensus 38.3 1.9E+02 0.0041 29.4 8.6 69 92-191 351-419 (514)
21 PF14781 BBS2_N: Ciliary BBSom 36.9 2E+02 0.0044 24.2 7.4 66 37-106 1-72 (136)
22 COG2706 3-carboxymuconate cycl 24.3 6.8E+02 0.015 24.5 11.8 126 93-250 47-174 (346)
23 PF00404 Dockerin_1: Dockerin 22.2 45 0.00098 18.7 0.8 9 159-167 1-9 (21)
No 1
>KOG3637|consensus
Probab=100.00 E-value=1.6e-64 Score=540.52 Aligned_cols=329 Identities=38% Similarity=0.635 Sum_probs=273.7
Q ss_pred CcceEEEEecC---CCCceEEeecCCCCCCCCcceeeEEEEeec--CCCeEEEeecCCCCeeeEEEEEEcC---Cceeee
Q psy1434 3 HSGQVISQNLY---DRPEFKATKEGPPTDDGSYMGYSVASGFFS--GESGVAVGIPRGARLLGKVALYTTN---MTNLQN 74 (357)
Q Consensus 3 ~~g~~~~~~~~---~~~~~~~~~~~~~~~~~sy~G~sva~gd~~--g~~~~vvGaP~~~~~~G~V~i~~~~---~~~~~~ 74 (357)
..|++++|+.. ....+.+.......++++||||||++|+|. +..++|+||||+....|+|++|+.. ....+.
T Consensus 234 W~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~sYLGYsV~~g~f~~~~~~~~VaGAPr~~~~~G~v~if~~~~~~~~~~~~ 313 (1030)
T KOG3637|consen 234 WKGGVFLYQSNLTLRHVTFINLLPENADRDDSYLGYSVAVGVFSGPGTISFVAGAPRYNHTGGKVYIFQLSGKSLRPLQV 313 (1030)
T ss_pred ccCeEEEeccccccccccccccCccccccccceeeEEEEeeeccCCCceEEEecCccccCcccEEEEEeccccccceeee
Confidence 46899999842 223444444444555799999999999999 5688999999974444999999975 456688
Q ss_pred ccCCccccccceEEEEEEeCCCCCceEEEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCC-cCCCccee
Q psy1434 75 ITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKN-SKARFGLS 153 (357)
Q Consensus 75 ~~g~~~~s~fG~sva~~D~ngDG~~DlvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~-~~~~fG~s 153 (357)
+.|+|++|||||+||+.|+|+||++||+||||+|+.+ ...+.|+||||.+.+. +.|....++.+.. ..+|||++
T Consensus 314 ~~GeQ~GSYFG~sl~~vDlNgDG~tDLLVGAP~y~~~----~~~e~GrVYVy~~~~~-~~~~~~~~L~~~~~~~~RFG~A 388 (1030)
T KOG3637|consen 314 LRGEQIGSYFGYSLAAVDLNGDGLTDLLVGAPLYFER----DRYEVGRVYVYLNGGL-GLFPEQITLRGPGGPSGRFGSA 388 (1030)
T ss_pred eeeeeehhhcCeeEEEEEcCCCCCcceEEecCccccC----CCCcceEEEEEEecCC-CCcccceeEecCCCcccchhhh
Confidence 9999999999999999999999999999999999975 2357899999999886 4566666555543 47799999
Q ss_pred EEeeccCCCCCCceeEEcCCCCCCCCccEEEEEeCCCCCCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCC
Q psy1434 154 LCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYP 233 (357)
Q Consensus 154 va~~gDiN~DG~~Dl~VgaP~~~~~~~G~Vyiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~ 233 (357)
|+.+||||+|||+|||||||+++ .+.|+||||+|+.+|+..+|+|+|.+..+.. ..++||+||+++.|||+||||
T Consensus 389 la~LGDlN~DG~nDVAVGAP~eg-~~~GaVYIy~Gs~~Gl~~~PSQ~I~g~~~~~----~l~~FG~SLsG~~DlDgNgyp 463 (1030)
T KOG3637|consen 389 LAALGDLNQDGYNDVAVGAPFEG-DNQGAVYIYHGSKGGLRSKPSQRIEGSSLGP----GLQYFGQSLSGGSDLDGNGYP 463 (1030)
T ss_pred hhcccCcccCCCCceEEeCCcCC-CCCceEEEEcCCCCCCCCCCceEEeccccCC----cccccccccccCccCCCCCCc
Confidence 99999999999999999999997 4559999999999999999999999988763 378999999999999999999
Q ss_pred cEEEeecCCCcEEEEccCCCCCCCCCCCeEEEEEcccccccCCCceeeecccccccce----------------------
Q psy1434 234 DLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQ---------------------- 291 (357)
Q Consensus 234 Dl~VGa~~~~~v~~~rsrpv~~~~~~~G~v~~~~~~~~~~~~~~~q~i~~~~~~c~~~---------------------- 291 (357)
||+|||+++++|++||+||| +.+++++.+.+ +.|++++++|...
T Consensus 464 DlaVGA~~s~~vvllrsRPV----------v~v~~~~~~~p----~~I~~~~~~C~~~~~~~c~~v~~Cf~~~~~~~~~~ 529 (1030)
T KOG3637|consen 464 DLAVGAFGSGQVVLLRARPV----------VTVSASLLFEP----RKINVEQKNCCVRGSKTCVNVTLCFSYSGKSVPPR 529 (1030)
T ss_pred cEEeccCCCCcEEEEEcccE----------EEEEeeEEcCc----ccCCccccccccCCCccEEEEEEEEEEeeecCCCc
Confidence 99999999999999999999 99999888766 4699999987542
Q ss_pred --eEEEEEEEccCC---CCCCceEEecCCCceEEEEEEEEeCCCCCeEEEEEEeecCCcceecceeeeee
Q psy1434 292 --ELNVQILLDSKK---PKSPRMFFLSDEGKNVINQTLLLIKGTQFCKSTVDMVCEAERPLCTPITPAVS 356 (357)
Q Consensus 292 --~~~~~~~ld~~~---~~~~r~~f~~~~~~~~~~~~~~l~~~~~~C~~~~~~~~~~~~D~l~pi~~~~~ 356 (357)
.++++++||..+ ...+|++|... +.+..+....+..+++.|.++.+|+++++|||||||.++|+
T Consensus 530 ~~~l~~~l~ld~~~~~~~~~~R~~F~~~-~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~D~ltPI~~~~~ 598 (1030)
T KOG3637|consen 530 TLDLRYELTLDVDKDKARQSPRALFLGS-GSRLGSLTAVLSQGQKSCRRLLLYLRDNVRDKLTPIVLSLN 598 (1030)
T ss_pred eEEEEEEEEeccccccccCcCcEEEccC-CCcceeeeeeecccccchhheeEecccccccceeeeEEEEE
Confidence 566777788633 23589999753 33344555555567888999999999999999999999986
No 2
>KOG3637|consensus
Probab=100.00 E-value=6.1e-35 Score=313.23 Aligned_cols=231 Identities=33% Similarity=0.557 Sum_probs=183.9
Q ss_pred CCCcceeeEE--EEeecCCCeEEEeecCCCCeeeEEEEEEcC--C---ceee--eccCCccccccceEEEEEEeCCCCCc
Q psy1434 29 DGSYMGYSVA--SGFFSGESGVAVGIPRGARLLGKVALYTTN--M---TNLQ--NITGEQLGAYFAYAVTTSDVDGDGAD 99 (357)
Q Consensus 29 ~~sy~G~sva--~gd~~g~~~~vvGaP~~~~~~G~V~i~~~~--~---~~~~--~~~g~~~~s~fG~sva~~D~ngDG~~ 99 (357)
.+..+|++-+ ++.+.+.+.+++|||+.+.|.|.+++++.. . +... ...-.+..+|+||+|+++++.+++..
T Consensus 203 ~~~~~gm~Q~GfSa~~t~~~~v~lGApG~~~W~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~sYLGYsV~~g~f~~~~~~ 282 (1030)
T KOG3637|consen 203 GEEIFGMCQAGFSAAFTDEDGLVLGAPGAYYWKGGVFLYQSNLTLRHVTFINLLPENADRDDSYLGYSVAVGVFSGPGTI 282 (1030)
T ss_pred hhhheeecccccceeecCCCcEEEeCCccccccCeEEEeccccccccccccccCccccccccceeeEEEEeeeccCCCce
Confidence 3445555543 455555668999999999999999999842 1 1111 11112357999999999999999999
Q ss_pred eEEEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCCcCCCcceeEEeeccCCCCCCceeEEcCCCCC---
Q psy1434 100 DLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDG--- 176 (357)
Q Consensus 100 DlvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~~~~~fG~sva~~gDiN~DG~~Dl~VgaP~~~--- 176 (357)
++|.|||++.+ ..|+||+|....+ .+...+.+.|++.++|||++||++ |+|+||++||+||||++-
T Consensus 283 ~~VaGAPr~~~--------~~G~v~if~~~~~--~~~~~~~~~GeQ~GSYFG~sl~~v-DlNgDG~tDLLVGAP~y~~~~ 351 (1030)
T KOG3637|consen 283 SFVAGAPRYNH--------TGGKVYIFQLSGK--SLRPLQVLRGEQIGSYFGYSLAAV-DLNGDGLTDLLVGAPLYFERD 351 (1030)
T ss_pred EEEecCccccC--------cccEEEEEecccc--ccceeeeeeeeeehhhcCeeEEEE-EcCCCCCcceEEecCccccCC
Confidence 99999999975 3599999998775 678888899999999999999987 999999999999999754
Q ss_pred CCCccEEEEEeCCCCCCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCCcEEEeecCCCcEEEEccCCCCCC
Q psy1434 177 PNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDG 256 (357)
Q Consensus 177 ~~~~G~Vyiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl~VGa~~~~~v~~~rsrpv~~~ 256 (357)
..+.|+||||.+.+.+.+... ..+.... +...+||.||+..+|||+|||+|+|||||. ++
T Consensus 352 ~~e~GrVYVy~~~~~~~~~~~-~~L~~~~------~~~~RFG~Ala~LGDlN~DG~nDVAVGAP~-------------eg 411 (1030)
T KOG3637|consen 352 RYEVGRVYVYLNGGLGLFPEQ-ITLRGPG------GPSGRFGSALAALGDLNQDGYNDVAVGAPF-------------EG 411 (1030)
T ss_pred CCcceEEEEEEecCCCCcccc-eeEecCC------CcccchhhhhhcccCcccCCCCceEEeCCc-------------CC
Confidence 258899999999987655432 2233221 135699999999999999999999999984 33
Q ss_pred CCCCCeEEEEEcccccccCCCceeeecccccccce
Q psy1434 257 PNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQ 291 (357)
Q Consensus 257 ~~~~G~v~~~~~~~~~~~~~~~q~i~~~~~~c~~~ 291 (357)
+++|+||||+|+..++.++|+|+|...+..+.++
T Consensus 412 -~~~GaVYIy~Gs~~Gl~~~PSQ~I~g~~~~~~l~ 445 (1030)
T KOG3637|consen 412 -DNQGAVYIYHGSKGGLRSKPSQRIEGSSLGPGLQ 445 (1030)
T ss_pred -CCCceEEEEcCCCCCCCCCCceEEeccccCCccc
Confidence 3449999999999999999999999999888755
No 3
>smart00191 Int_alpha Integrin alpha (beta-propellor repeats). Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.
Probab=98.92 E-value=1.6e-09 Score=77.87 Aligned_cols=47 Identities=45% Similarity=0.830 Sum_probs=40.0
Q ss_pred CCCcceeEEeeccCCCCCCceeEEcCCCCCCC-CccEEEEEeCCCCCC
Q psy1434 147 KARFGLSLCNLGDINKDGFGDFAVGAPYDGPN-ERGVVYIYHGSPIGA 193 (357)
Q Consensus 147 ~~~fG~sva~~gDiN~DG~~Dl~VgaP~~~~~-~~G~Vyiy~g~~~g~ 193 (357)
.++||++|+.++|+|+||+.||+||||.++.. +.|+||+|.+++.+.
T Consensus 2 ~~~fG~sv~~~~d~ngDg~~dl~vGAP~~~~~~~~G~vy~~~~~~~~~ 49 (58)
T smart00191 2 GSYFGYSVAGVGDVNGDGYPDLLVGAPRANDAGETGAVYVYFGSSGGG 49 (58)
T ss_pred CcccchhheeccccCCCCccCEEEeCcccCCCCCCCEEEEEEecCCCC
Confidence 57899999988999999999999999987522 379999999987543
No 4
>PF08441 Integrin_alpha2: Integrin alpha; InterPro: IPR013649 This domain is found in integrin alpha and integrin alpha precursors to the C terminus of a number of IPR013517 from INTERPRO repeats and to the N terminus of the IPR013513 from INTERPRO cytoplasmic region. ; PDB: 1M1X_A 1U8C_A 1L5G_A 3IJE_A 1JV2_A 2VDN_A 2VC2_A 3NIF_A 3NIG_C 2VDM_A ....
Probab=98.85 E-value=1.2e-08 Score=103.07 Aligned_cols=93 Identities=30% Similarity=0.419 Sum_probs=63.0
Q ss_pred cCCCCCCCCCCCeEEEEEcccccccCCCceeeecccccccce----------------------------eEEEEEEEcc
Q psy1434 250 STAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQ----------------------------ELNVQILLDS 301 (357)
Q Consensus 250 srpv~~~~~~~G~v~~~~~~~~~~~~~~~q~i~~~~~~c~~~----------------------------~~~~~~~ld~ 301 (357)
|||| +.+..+..+.+. .|++++.+|... +|+|++.||.
T Consensus 1 sRPV----------v~v~~~i~~~p~----~I~~~~~~C~~~~~~~~~c~~v~~Cf~~~~~~~~~~~~~~~l~y~l~lD~ 66 (457)
T PF08441_consen 1 SRPV----------VSVEASITFSPD----KIDLENKNCTLNDGKSVTCFNVTVCFSYTGKSVFSDPSSIDLNYTLELDS 66 (457)
T ss_dssp B-SE----------EEEEEEEEESSS----SE-TTTSSCESSSSSEEEEEEEEEEEEEE-TSSSTTTSEEEEEEEEEEST
T ss_pred CCCE----------EEEEEEEEECCc----ccCCCccCCCCCCCcceEEEEEEEEEEEEccccccCCcceeEEEEEEEec
Confidence 6888 888888888775 499999888642 5677777775
Q ss_pred -CCCCCCceEEecCCCceEEEEEEEEeCCCCCeEEEEEEeecCCcceecceeeeee
Q psy1434 302 -KKPKSPRMFFLSDEGKNVINQTLLLIKGTQFCKSTVDMVCEAERPLCTPITPAVS 356 (357)
Q Consensus 302 -~~~~~~r~~f~~~~~~~~~~~~~~l~~~~~~C~~~~~~~~~~~~D~l~pi~~~~~ 356 (357)
.....+|++|...+..+.....+.+..+...|.++.+||+++++|+|+||.|+|+
T Consensus 67 ~~~~~~~R~~F~~~~~~~~~~~~~~~~~~~~~C~~~~v~l~~~~~D~lsPI~v~l~ 122 (457)
T PF08441_consen 67 DKKRQNPRAFFLDNESSSITKTLILLSQGQEQCRTITVYLKEEIRDKLSPIKVSLS 122 (457)
T ss_dssp TTTTSC-SEEETTTTSSEEEEEEEEECSSS-EEEEEEEEE-SG-S-SSS-EEEEEE
T ss_pred ccCCccccEEEccCCCccEEEEEEEecCCCCeEEEEEEEeccCCccccCCcEEEEE
Confidence 2335789999533344444444555567778999999999999999999999986
No 5
>smart00191 Int_alpha Integrin alpha (beta-propellor repeats). Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.
Probab=98.74 E-value=1.3e-08 Score=73.10 Aligned_cols=45 Identities=44% Similarity=0.884 Sum_probs=38.7
Q ss_pred ccccceEEE-EEEeCCCCCceEEEeccCcCCCCCCCCCccccEEEEEEeCCC
Q psy1434 81 GAYFAYAVT-TSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKE 131 (357)
Q Consensus 81 ~s~fG~sva-~~D~ngDG~~DlvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~ 131 (357)
+++||++|+ .+|+|+||..||+||||++.... +.|+||+|.....
T Consensus 2 ~~~fG~sv~~~~d~ngDg~~dl~vGAP~~~~~~------~~G~vy~~~~~~~ 47 (58)
T smart00191 2 GSYFGYSVAGVGDVNGDGYPDLLVGAPRANDAG------ETGAVYVYFGSSG 47 (58)
T ss_pred CcccchhheeccccCCCCccCEEEeCcccCCCC------CCCEEEEEEecCC
Confidence 689999999 89999999999999999986421 4799999998753
No 6
>PF01839 FG-GAP: FG-GAP repeat; InterPro: IPR013517 This region contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure []. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat []. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding []. A putative Ca2+ binding motif is found in some of the repeats. ; PDB: 1L5G_A 3IJE_A 1M1X_A 1JV2_A 1U8C_A 3V4P_C 3V4V_C 3VI3_A 3VI4_C 2VDN_A ....
Probab=98.62 E-value=5.8e-08 Score=61.84 Aligned_cols=34 Identities=47% Similarity=0.947 Sum_probs=25.8
Q ss_pred cceeEEeeccCCCCCCceeEEcCCCCCCCCccEEEEE
Q psy1434 150 FGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIY 186 (357)
Q Consensus 150 fG~sva~~gDiN~DG~~Dl~VgaP~~~~~~~G~Vyiy 186 (357)
||.+++ ++|+|+||++||+||. ......|+||||
T Consensus 1 fG~~~~-~gD~ngDG~~Dl~vg~--~~~~~~G~v~v~ 34 (34)
T PF01839_consen 1 FGSSVA-VGDFNGDGYDDLAVGY--NNGGNAGAVYVY 34 (34)
T ss_dssp TTSCEE-EESTSSSSS-EEEEET--TTTCTCBEEEEE
T ss_pred CCcccE-EEEcCCCCCccEEEEc--CCCCcCCEEEEC
Confidence 788888 4699999999999983 212344999997
No 7
>PF13517 VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; PDB: 2C25_A 2BWR_B 2C4D_A 2BWM_A.
Probab=98.49 E-value=3.4e-07 Score=66.13 Aligned_cols=61 Identities=30% Similarity=0.491 Sum_probs=34.4
Q ss_pred EeCCCCCceEEEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCCcCCCcceeEEeeccCCCCCCceeEE
Q psy1434 92 DVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAV 170 (357)
Q Consensus 92 D~ngDG~~DlvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~~~~~fG~sva~~gDiN~DG~~Dl~V 170 (357)
|+|+||+.||++.. .+++++|++.+. +.|............. ...++ ++|+|+||..||+|
T Consensus 1 D~ngDG~~Div~~~--------------~~~~~~~~~~~~-g~~~~~~~~~~~~~~~--~~~~~-~~D~d~DG~~Di~V 61 (61)
T PF13517_consen 1 DFNGDGRPDIVVAN--------------DGSVYVYLNDGD-GTFQFPAQIPFSSSGS--GWSVA-FADIDGDGKPDILV 61 (61)
T ss_dssp -SSSSSS-EEEEE---------------SSSEEEEEB-SS-S-BEEEEEEBTTCSGG--TTTTC-EE-SSSSSS-EEE-
T ss_pred CCCCCCCccEEEEe--------------CCCeEEEEECCC-CCeEEeeeEeeCCCCC--cceeE-EEEccCCCcccEEC
Confidence 79999999999985 134777887765 4565544332222222 22333 57999999999986
No 8
>PF01839 FG-GAP: FG-GAP repeat; InterPro: IPR013517 This region contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure []. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat []. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding []. A putative Ca2+ binding motif is found in some of the repeats. ; PDB: 1L5G_A 3IJE_A 1M1X_A 1JV2_A 1U8C_A 3V4P_C 3V4V_C 3VI3_A 3VI4_C 2VDN_A ....
Probab=98.46 E-value=1.8e-07 Score=59.56 Aligned_cols=34 Identities=44% Similarity=0.815 Sum_probs=26.5
Q ss_pred cceEEEEEEeCCCCCceEEEeccCcCCCCCCCCCccccEEEEE
Q psy1434 84 FAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVV 126 (357)
Q Consensus 84 fG~sva~~D~ngDG~~DlvvGaP~~~~~~~~~~~~~~G~Vyv~ 126 (357)
||++++++|+|+||++||+|| + .. +. ..|+||||
T Consensus 1 fG~~~~~gD~ngDG~~Dl~vg-~--~~-----~~-~~G~v~v~ 34 (34)
T PF01839_consen 1 FGSSVAVGDFNGDGYDDLAVG-Y--NN-----GG-NAGAVYVY 34 (34)
T ss_dssp TTSCEEEESTSSSSS-EEEEE-T--TT-----TC-TCBEEEEE
T ss_pred CCcccEEEEcCCCCCccEEEE-c--CC-----CC-cCCEEEEC
Confidence 899999999999999999999 2 11 11 24999997
No 9
>PF13517 VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; PDB: 2C25_A 2BWR_B 2C4D_A 2BWM_A.
Probab=98.28 E-value=4.8e-07 Score=65.34 Aligned_cols=61 Identities=33% Similarity=0.508 Sum_probs=32.5
Q ss_pred cCCCCCCceeEEcCCCCCCCCccEEEEEeCCCCCCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCCcEEE
Q psy1434 159 DINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVI 237 (357)
Q Consensus 159 DiN~DG~~Dl~VgaP~~~~~~~G~Vyiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl~V 237 (357)
|+|+||++||++.. .+.+++|.....+.+... ...... ......++. .+|+|+||++||+|
T Consensus 1 D~ngDG~~Div~~~-------~~~~~~~~~~~~g~~~~~-~~~~~~---------~~~~~~~~~-~~D~d~DG~~Di~V 61 (61)
T PF13517_consen 1 DFNGDGRPDIVVAN-------DGSVYVYLNDGDGTFQFP-AQIPFS---------SSGSGWSVA-FADIDGDGKPDILV 61 (61)
T ss_dssp -SSSSSS-EEEEE--------SSSEEEEEB-SSS-BEEE-EEEBTT---------CSGGTTTTC-EE-SSSSSS-EEE-
T ss_pred CCCCCCCccEEEEe-------CCCeEEEEECCCCCeEEe-eeEeeC---------CCCCcceeE-EEEccCCCcccEEC
Confidence 89999999999884 245788887765543211 111111 112222343 35999999999987
No 10
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.69 E-value=0.00025 Score=57.33 Aligned_cols=101 Identities=24% Similarity=0.285 Sum_probs=59.4
Q ss_pred eEEEEEEeCCCCCceEEEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEee-----eecCCCcCCCcceeEEeeccC
Q psy1434 86 YAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLH-----TRDGKNSKARFGLSLCNLGDI 160 (357)
Q Consensus 86 ~sva~~D~ngDG~~DlvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~-----~~~g~~~~~~fG~sva~~gDi 160 (357)
.++|..|+|+||...|+||+. --.+.||.+..- .++... .+... ..++|++++
T Consensus 3 ~al~~~d~d~dg~~eLlvGs~-------------D~~IRvf~~~e~--~~Ei~e~~~v~~L~~~-~~~~F~Y~l------ 60 (111)
T PF14783_consen 3 TALCLFDFDGDGENELLVGSD-------------DFEIRVFKGDEI--VAEITETDKVTSLCSL-GGGRFAYAL------ 60 (111)
T ss_pred eEEEEEecCCCCcceEEEecC-------------CcEEEEEeCCcE--EEEEecccceEEEEEc-CCCEEEEEe------
Confidence 478999999999999999983 246778876542 111111 01100 123444443
Q ss_pred CCCCCceeEEcCCCCCCCCccEEEEEeCCCCCCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCCcEEEeec
Q psy1434 161 NKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAY 240 (357)
Q Consensus 161 N~DG~~Dl~VgaP~~~~~~~G~Vyiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl~VGa~ 240 (357)
..|.|=+|.....-++.+..+. =.++.. .|+|+||+++|++|-.
T Consensus 61 ------------------~NGTVGvY~~~~RlWRiKSK~~-----------------~~~~~~-~D~~gdG~~eLI~Gws 104 (111)
T PF14783_consen 61 ------------------ANGTVGVYDRSQRLWRIKSKNQ-----------------VTSMAF-YDINGDGVPELIVGWS 104 (111)
T ss_pred ------------------cCCEEEEEeCcceeeeeccCCC-----------------eEEEEE-EcCCCCCceEEEEEec
Confidence 3478888877543222111111 123333 4999999999999975
Q ss_pred CCCcE
Q psy1434 241 ESNTA 245 (357)
Q Consensus 241 ~~~~v 245 (357)
+|++
T Consensus 105 -nGkv 108 (111)
T PF14783_consen 105 -NGKV 108 (111)
T ss_pred -CCeE
Confidence 3443
No 11
>PF14312 FG-GAP_2: FG-GAP repeat
Probab=96.76 E-value=0.0026 Score=43.90 Aligned_cols=36 Identities=33% Similarity=0.647 Sum_probs=27.6
Q ss_pred CCcCCCcceeEEeeccCCCCCCceeEEcCCCCCC--CCccEEEEE
Q psy1434 144 KNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGP--NERGVVYIY 186 (357)
Q Consensus 144 ~~~~~~fG~sva~~gDiN~DG~~Dl~VgaP~~~~--~~~G~Vyiy 186 (357)
.....+||.+|+.-|| -|+||||+++. .+.|+||||
T Consensus 12 ~~~~d~FG~sVai~gd-------~~vVGA~~~~~~~~~~GaaYvf 49 (49)
T PF14312_consen 12 GAAGDYFGWSVAISGD-------TLVVGAPGDDSNGSDSGAAYVF 49 (49)
T ss_pred CCccCcceeEEEEeCC-------EEEEeeeccCCCCCcCCEEEEC
Confidence 3467899999885443 29999998753 357999997
No 12
>PF14312 FG-GAP_2: FG-GAP repeat
Probab=96.62 E-value=0.0051 Score=42.43 Aligned_cols=39 Identities=33% Similarity=0.658 Sum_probs=28.8
Q ss_pred CCccccccceEEEEEEeCCCCCceEEEeccCcCCCCCCCCCccccEEEEE
Q psy1434 77 GEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVV 126 (357)
Q Consensus 77 g~~~~s~fG~sva~~D~ngDG~~DlvvGaP~~~~~~~~~~~~~~G~Vyv~ 126 (357)
....+++||++|++ ++| .||||||..... ....|+||||
T Consensus 11 d~~~~d~FG~sVai---~gd---~~vVGA~~~~~~-----~~~~GaaYvf 49 (49)
T PF14312_consen 11 DGAAGDYFGWSVAI---SGD---TLVVGAPGDDSN-----GSDSGAAYVF 49 (49)
T ss_pred CCCccCcceeEEEE---eCC---EEEEeeeccCCC-----CCcCCEEEEC
Confidence 45678899999984 444 499999987642 1257999997
No 13
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.94 E-value=0.14 Score=41.45 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=20.7
Q ss_pred eEEEEeec--CCCeEEEeecCCCCeeeEEEEEEcC
Q psy1434 36 SVASGFFS--GESGVAVGIPRGARLLGKVALYTTN 68 (357)
Q Consensus 36 sva~gd~~--g~~~~vvGaP~~~~~~G~V~i~~~~ 68 (357)
|++..||+ |...|++|+.-. .+.+|+..
T Consensus 4 al~~~d~d~dg~~eLlvGs~D~-----~IRvf~~~ 33 (111)
T PF14783_consen 4 ALCLFDFDGDGENELLVGSDDF-----EIRVFKGD 33 (111)
T ss_pred EEEEEecCCCCcceEEEecCCc-----EEEEEeCC
Confidence 67888998 668899997652 56777654
No 14
>KOG4550|consensus
Probab=94.97 E-value=0.17 Score=49.82 Aligned_cols=127 Identities=17% Similarity=0.163 Sum_probs=65.9
Q ss_pred eEEEEEEeCCCCCceEEEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEee-eec-CCCcCCCcceeEEeeccCCCC
Q psy1434 86 YAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLH-TRD-GKNSKARFGLSLCNLGDINKD 163 (357)
Q Consensus 86 ~sva~~D~ngDG~~DlvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~-~~~-g~~~~~~fG~sva~~gDiN~D 163 (357)
-.+-+.|+|+|++.|+.--.|..+. .-.++ ..+. ....+.. .+. .....-+-+.+=+.+ |+|+|
T Consensus 142 ~e~ma~Dfn~D~i~Di~G~~~ne~~-----------~~~i~-~~g~-l~llc~H~a~~t~~KlN~~ip~~hafi-DLn~D 207 (606)
T KOG4550|consen 142 DEPMAMDFNGDLIPDIFGITNNESN-----------QPQIL-LGGN-LSLLCWHPALTTTSKLNMRIPHSHAFI-DLNED 207 (606)
T ss_pred CCcEEEEcCCCcceeeccccccccc-----------Cccee-cCCC-CChhhcccccccchhccccCCCcceeE-ecccc
Confidence 3455789999999999754443221 11122 2221 1111111 010 011223445555666 99999
Q ss_pred CCceeEEcCCCCCCCCccEE--EEEeCCCCCCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCCcEEEee
Q psy1434 164 GFGDFAVGAPYDGPNERGVV--YIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGA 239 (357)
Q Consensus 164 G~~Dl~VgaP~~~~~~~G~V--yiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl~VGa 239 (357)
=..||+..+-. ..|.. -||++... .+ ..+..+.... +.....-|.++. +|+|+||..|++|--
T Consensus 208 f~ADlfl~Tk~----s~~t~~~eiW~~~~~-nf-s~~~~~~kp~-----pan~~~vGq~vf--mDfd~dG~~dilvP~ 272 (606)
T KOG4550|consen 208 FTADLFLTTKA----STSTFQFEIWENLDG-NF-SVSTILEKPQ-----PANMMVVGQSVF--MDFDGDGHMDILVPG 272 (606)
T ss_pred ceeeeEEEecc----CCCceeeehhhcCCC-ce-EEEEEccCCC-----CCCceeecceEE--EeecCCcceeeeecc
Confidence 99999876621 22322 24444432 11 1122222111 113455677764 699999999999865
No 15
>KOG4550|consensus
Probab=93.71 E-value=0.69 Score=45.77 Aligned_cols=76 Identities=17% Similarity=0.128 Sum_probs=45.7
Q ss_pred cccceEEEEEEeCCCCCceEEEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCC--cCCCcceeEEeecc
Q psy1434 82 AYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKN--SKARFGLSLCNLGD 159 (357)
Q Consensus 82 s~fG~sva~~D~ngDG~~DlvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~--~~~~fG~sva~~gD 159 (357)
-|-+.+=+..|+|+|=..||+.-+- ... + .=..-|+.+... .|+....+.-.+ ..-.-|.++. -|
T Consensus 193 ~~ip~~hafiDLn~Df~ADlfl~Tk-~s~-----~---t~~~eiW~~~~~--nfs~~~~~~kp~pan~~~vGq~vf--mD 259 (606)
T KOG4550|consen 193 MRIPHSHAFIDLNEDFTADLFLTTK-AST-----S---TFQFEIWENLDG--NFSVSTILEKPQPANMMVVGQSVF--MD 259 (606)
T ss_pred ccCCCcceeEeccccceeeeEEEec-cCC-----C---ceeeehhhcCCC--ceEEEEEccCCCCCCceeecceEE--Ee
Confidence 4567777889999999999987651 110 0 112234444433 565444333222 1223466665 39
Q ss_pred CCCCCCceeEE
Q psy1434 160 INKDGFGDFAV 170 (357)
Q Consensus 160 iN~DG~~Dl~V 170 (357)
+++||..|++|
T Consensus 260 fd~dG~~dilv 270 (606)
T KOG4550|consen 260 FDGDGHMDILV 270 (606)
T ss_pred ecCCcceeeee
Confidence 99999999988
No 16
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=69.25 E-value=27 Score=32.74 Aligned_cols=82 Identities=20% Similarity=0.171 Sum_probs=51.0
Q ss_pred cceEEEEEEeCCCCCceEEEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCCcCCCcceeEE-eeccCCC
Q psy1434 84 FAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLC-NLGDINK 162 (357)
Q Consensus 84 fG~sva~~D~ngDG~~DlvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~~~~~fG~sva-~~gDiN~ 162 (357)
|..-++.+|++|||..-|||+.-.... ..-+.-||.+..- .....+.+.+ .+++ ...|-..
T Consensus 16 ~ssC~~l~Dl~gDGd~kLvvaD~g~~~--------~~~kLKVykGt~l----~~E~~L~d~P------~ai~sFy~d~~e 77 (257)
T PF14779_consen 16 FSSCMALADLQGDGDYKLVVADLGTGD--------QNMKLKVYKGTSL----ISEITLPDLP------SAIVSFYMDEHE 77 (257)
T ss_pred cCceeEeeecCCCCeEEEEEEecCCcC--------CCceEEEEcCCCh----hhcccccCCC------eEEEEEeccCCC
Confidence 566788999999999999998632211 1237778875543 1222232322 2332 2345555
Q ss_pred CCCceeEEcCCCCCCCCccEEEEEeCCC
Q psy1434 163 DGFGDFAVGAPYDGPNERGVVYIYHGSP 190 (357)
Q Consensus 163 DG~~Dl~VgaP~~~~~~~G~Vyiy~g~~ 190 (357)
-..+-|+|++- ..||||.+-+
T Consensus 78 p~~P~iAVA~G-------~~vyiYkNlk 98 (257)
T PF14779_consen 78 PRTPAIAVAAG-------PSVYIYKNLK 98 (257)
T ss_pred CCCCeEEEEeC-------CEEEEEeccc
Confidence 67888888763 4799999865
No 17
>PF12256 TcdB_toxin_midN: Insecticide toxin TcdB middle/N-terminal region; InterPro: IPR022045 This domain family is found in bacteria and archaea, and is typically between 164 and 180 amino acids in length. The family is found in association with PF05593 from PFAM. This domain is the N-terminal-sided middle region of the bacterial insecticide toxin TcdB.
Probab=67.42 E-value=5.5 Score=34.83 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=16.4
Q ss_pred eeccCCCCCCceeEEcCCCC
Q psy1434 156 NLGDINKDGFGDFAVGAPYD 175 (357)
Q Consensus 156 ~~gDiN~DG~~Dl~VgaP~~ 175 (357)
.++|||+||..||+...+..
T Consensus 28 ~~~DinGdG~~dlv~~~~~~ 47 (175)
T PF12256_consen 28 SVADINGDGTADLVWSSPSS 47 (175)
T ss_pred EEEEeCCCCCEEEEEecCCc
Confidence 46799999999999966643
No 18
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=65.76 E-value=20 Score=33.51 Aligned_cols=82 Identities=16% Similarity=0.304 Sum_probs=48.9
Q ss_pred eeEEeeccCCCCCCceeEEcCCCCCCCCccEEEEEeCCCCCCCCCCceEEecceeccccCCCccccceeeeccccCCCCC
Q psy1434 152 LSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQ 231 (357)
Q Consensus 152 ~sva~~gDiN~DG~~Dl~VgaP~~~~~~~G~Vyiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG 231 (357)
+-++ ++|+++||..-|+|+.-..+ ...-++-||.|..- ...+.|. +.|..... --.|-..-.
T Consensus 18 sC~~-l~Dl~gDGd~kLvvaD~g~~-~~~~kLKVykGt~l----~~E~~L~------d~P~ai~s------Fy~d~~ep~ 79 (257)
T PF14779_consen 18 SCMA-LADLQGDGDYKLVVADLGTG-DQNMKLKVYKGTSL----ISEITLP------DLPSAIVS------FYMDEHEPR 79 (257)
T ss_pred ceeE-eeecCCCCeEEEEEEecCCc-CCCceEEEEcCCCh----hhccccc------CCCeEEEE------EeccCCCCC
Confidence 3444 67999999999999864321 12347888887642 1111111 11111111 124666678
Q ss_pred CCcEEEeecCCCcEEEEcc-CCC
Q psy1434 232 YPDLVIGAYESNTAFVLRS-TAP 253 (357)
Q Consensus 232 ~~Dl~VGa~~~~~v~~~rs-rpv 253 (357)
.|-|||++ ...|++||. ||-
T Consensus 80 ~P~iAVA~--G~~vyiYkNlkP~ 100 (257)
T PF14779_consen 80 TPAIAVAA--GPSVYIYKNLKPF 100 (257)
T ss_pred CCeEEEEe--CCEEEEEecccce
Confidence 89999999 578999885 444
No 19
>PF12256 TcdB_toxin_midN: Insecticide toxin TcdB middle/N-terminal region; InterPro: IPR022045 This domain family is found in bacteria and archaea, and is typically between 164 and 180 amino acids in length. The family is found in association with PF05593 from PFAM. This domain is the N-terminal-sided middle region of the bacterial insecticide toxin TcdB.
Probab=62.99 E-value=7.8 Score=33.86 Aligned_cols=23 Identities=35% Similarity=0.694 Sum_probs=19.4
Q ss_pred ceEEEEEEeCCCCCceEEEeccC
Q psy1434 85 AYAVTTSDVDGDGADDLIIGAPL 107 (357)
Q Consensus 85 G~sva~~D~ngDG~~DlvvGaP~ 107 (357)
...+.++|+||||..||+...|.
T Consensus 24 ~~~~~~~DinGdG~~dlv~~~~~ 46 (175)
T PF12256_consen 24 LSQVSVADINGDGTADLVWSSPS 46 (175)
T ss_pred ccEEEEEEeCCCCCEEEEEecCC
Confidence 46788999999999999996654
No 20
>KOG2055|consensus
Probab=38.32 E-value=1.9e+02 Score=29.43 Aligned_cols=69 Identities=29% Similarity=0.471 Sum_probs=43.5
Q ss_pred EeCCCCCceEEEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCCcCCCcceeEEeeccCCCCCCceeEEc
Q psy1434 92 DVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVG 171 (357)
Q Consensus 92 D~ngDG~~DlvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~~~~~fG~sva~~gDiN~DG~~Dl~Vg 171 (357)
-+..||..-+++|+ .|.||++-.+.. ... ......++-.|.++|. -+|++ =||+|
T Consensus 351 ~fsSdsk~l~~~~~--------------~GeV~v~nl~~~----~~~--~rf~D~G~v~gts~~~--S~ng~---ylA~G 405 (514)
T KOG2055|consen 351 TFSSDSKELLASGG--------------TGEVYVWNLRQN----SCL--HRFVDDGSVHGTSLCI--SLNGS---YLATG 405 (514)
T ss_pred EEecCCcEEEEEcC--------------CceEEEEecCCc----ceE--EEEeecCccceeeeee--cCCCc---eEEec
Confidence 35678865455554 589999865443 111 1122345567888885 36666 36787
Q ss_pred CCCCCCCCccEEEEEeCCCC
Q psy1434 172 APYDGPNERGVVYIYHGSPI 191 (357)
Q Consensus 172 aP~~~~~~~G~Vyiy~g~~~ 191 (357)
+ +.|.|-||.++..
T Consensus 406 S------~~GiVNIYd~~s~ 419 (514)
T KOG2055|consen 406 S------DSGIVNIYDGNSC 419 (514)
T ss_pred c------CcceEEEeccchh
Confidence 4 7899999997654
No 21
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=36.92 E-value=2e+02 Score=24.19 Aligned_cols=66 Identities=23% Similarity=0.234 Sum_probs=34.1
Q ss_pred EEEEeecCCCeEEEeecCCCCeeeEEEEEEcCCceeee--ccCCccccccc---eEEEEEEeC-CCCCceEEEecc
Q psy1434 37 VASGFFSGESGVAVGIPRGARLLGKVALYTTNMTNLQN--ITGEQLGAYFA---YAVTTSDVD-GDGADDLIIGAP 106 (357)
Q Consensus 37 va~gd~~g~~~~vvGaP~~~~~~G~V~i~~~~~~~~~~--~~g~~~~s~fG---~sva~~D~n-gDG~~DlvvGaP 106 (357)
|++|.|+|...-++.| ...|+|+|+......... ...+-.-=.|+ .+++++-|+ .++.+-|+||++
T Consensus 1 VaiGkfDG~~pcL~~a----T~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~ 72 (136)
T PF14781_consen 1 VAIGKFDGVHPCLACA----TTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ 72 (136)
T ss_pred CeEEEeCCCceeEEEE----ecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc
Confidence 5789999654444343 346899999643211000 00000000122 356677777 455555788884
No 22
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=24.32 E-value=6.8e+02 Score=24.52 Aligned_cols=126 Identities=17% Similarity=0.260 Sum_probs=70.6
Q ss_pred eCCCCCceEEEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEe--eeecCCCcCCCcceeEEeeccCCCCCCceeEE
Q psy1434 93 VDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRL--HTRDGKNSKARFGLSLCNLGDINKDGFGDFAV 170 (357)
Q Consensus 93 ~ngDG~~DlvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~--~~~~g~~~~~~fG~sva~~gDiN~DG~~Dl~V 170 (357)
+|.+++.-.++..|. +.|.|-.|......+.++.. ..+.|. .-|.+ +++.||. +++
T Consensus 47 ~~~~~~~LY~v~~~~-----------~~ggvaay~iD~~~G~Lt~ln~~~~~g~--------~p~yv-svd~~g~--~vf 104 (346)
T COG2706 47 VNPDQRHLYVVNEPG-----------EEGGVAAYRIDPDDGRLTFLNRQTLPGS--------PPCYV-SVDEDGR--FVF 104 (346)
T ss_pred ECCCCCEEEEEEecC-----------CcCcEEEEEEcCCCCeEEEeeccccCCC--------CCeEE-EECCCCC--EEE
Confidence 666665444554432 25667777776543344433 233333 22445 6788884 555
Q ss_pred cCCCCCCCCccEEEEEeCCCCCCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCCcEEEeecCCCcEEEEcc
Q psy1434 171 GAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRS 250 (357)
Q Consensus 171 gaP~~~~~~~G~Vyiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl~VGa~~~~~v~~~rs 250 (357)
.|-| ..|.|-||.-+..|....+.|.+.-.... |...+--.. ... .+++-||.- |++-..+.|++++|+-
T Consensus 105 ~AnY----~~g~v~v~p~~~dG~l~~~v~~~~h~g~~---p~~rQ~~~h-~H~-a~~tP~~~~-l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 105 VANY----HSGSVSVYPLQADGSLQPVVQVVKHTGSG---PHERQESPH-VHS-ANFTPDGRY-LVVPDLGTDRIFLYDL 174 (346)
T ss_pred EEEc----cCceEEEEEcccCCccccceeeeecCCCC---CCccccCCc-cce-eeeCCCCCE-EEEeecCCceEEEEEc
Confidence 5544 45899999988777766565554422211 100110110 111 267777731 7777888999999984
No 23
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=22.18 E-value=45 Score=18.65 Aligned_cols=9 Identities=44% Similarity=0.645 Sum_probs=5.8
Q ss_pred cCCCCCCce
Q psy1434 159 DINKDGFGD 167 (357)
Q Consensus 159 DiN~DG~~D 167 (357)
|+|+||.-+
T Consensus 1 DvN~DG~vn 9 (21)
T PF00404_consen 1 DVNGDGKVN 9 (21)
T ss_dssp -TTSSSSSS
T ss_pred CCCCCCcCC
Confidence 788888644
Done!