Query psy1434
Match_columns 357
No_of_seqs 298 out of 2224
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 17:25:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1434.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1434hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v4v_A Integrin alpha-4; cell 100.0 2.5E-56 8.5E-61 458.4 29.1 327 3-356 188-547 (597)
2 3vi3_A Integrin alpha-5; beta 100.0 1.6E-55 5.5E-60 454.3 31.5 314 25-356 223-568 (632)
3 3k6s_A Integrin alpha-X; cell 100.0 1.1E-53 3.9E-58 465.4 30.6 323 3-356 356-716 (1095)
4 3fcs_A Integrin, alpha 2B; bet 100.0 7.8E-53 2.7E-57 451.8 25.7 310 25-356 227-570 (959)
5 3ije_A Integrin alpha-V; integ 100.0 2E-51 6.7E-56 442.5 31.0 314 23-356 212-560 (967)
6 3t3p_A Integrin alpha-IIB; int 100.0 5.7E-44 1.9E-48 355.5 17.9 223 25-253 227-453 (457)
7 3v4v_A Integrin alpha-4; cell 100.0 6.6E-33 2.2E-37 284.7 20.3 221 31-287 165-391 (597)
8 3vi3_A Integrin alpha-5; beta 100.0 3E-30 1E-34 266.2 22.4 220 33-285 161-406 (632)
9 3t3p_A Integrin alpha-IIB; int 100.0 1.1E-29 3.9E-34 252.6 15.9 221 30-284 161-410 (457)
10 3ije_A Integrin alpha-V; integ 100.0 1.3E-27 4.5E-32 257.4 24.6 212 40-286 161-396 (967)
11 3k6s_A Integrin alpha-X; cell 100.0 5.4E-27 1.9E-31 255.7 25.3 220 31-287 333-559 (1095)
12 3fcs_A Integrin, alpha 2B; bet 100.0 5.3E-28 1.8E-32 259.6 16.7 221 30-284 161-410 (959)
13 2bwr_A Psathyrella velutina le 99.4 2.2E-12 7.5E-17 126.5 15.8 213 4-252 136-367 (401)
14 2bwr_A Psathyrella velutina le 99.4 7.7E-12 2.6E-16 122.6 17.2 182 35-252 116-312 (401)
15 4a7k_A Aldos-2-ulose dehydrata 99.3 9.6E-11 3.3E-15 121.0 19.9 214 4-249 127-373 (900)
16 4a7k_A Aldos-2-ulose dehydrata 99.2 3.2E-10 1.1E-14 117.2 15.9 189 31-240 31-239 (900)
17 2zux_A YESW protein; beta-prop 98.0 0.00015 5.1E-09 73.0 15.5 190 36-239 116-345 (591)
18 2zuy_A YESX protein; beta-prop 97.9 0.00019 6.6E-09 72.4 15.9 192 36-239 120-349 (620)
19 2zux_A YESW protein; beta-prop 97.1 0.0031 1.1E-07 63.5 11.3 87 83-173 112-199 (591)
20 2zuy_A YESX protein; beta-prop 96.6 0.05 1.7E-06 55.1 15.9 86 83-172 116-202 (620)
No 1
>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A*
Probab=100.00 E-value=2.5e-56 Score=458.44 Aligned_cols=327 Identities=29% Similarity=0.514 Sum_probs=264.8
Q ss_pred CcceEEEEecCCCCceEEeecCCCCCCCCcceeeEEEEeec--CCCeEEEeecCCCCeeeEEEEEEcCCce---eeeccC
Q psy1434 3 HSGQVISQNLYDRPEFKATKEGPPTDDGSYMGYSVASGFFS--GESGVAVGIPRGARLLGKVALYTTNMTN---LQNITG 77 (357)
Q Consensus 3 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~sy~G~sva~gd~~--g~~~~vvGaP~~~~~~G~V~i~~~~~~~---~~~~~g 77 (357)
.+|+|++|+...........+......++||||||++|||+ |..+||+|||++ ++.|+|++|..+... .+.+.|
T Consensus 188 w~G~v~~~~~~~~~~~~~~~~~~~~~~~sy~GySva~gD~ngDG~~DlvvGAP~~-~~~G~V~v~~~~~~~~~~~~~l~G 266 (597)
T 3v4v_A 188 WTGSLFVYNITTNKYKAFLDKQNQVKFGSYLGYSVGAGHFRSQHTTEVVGGAPQH-EQIGKAYIFSIDEKELNILHEMKG 266 (597)
T ss_dssp HTBEEEEEETTTTBCCBBCCTTCCSCTTCCBTSSEEEECSSCTTSCEEEEEETTG-GGTCEEEEEEECSSSEEEEEEEEC
T ss_pred cccceEEEEccCceeeecccccccccccCcCccEEEEEEECCCCCeEEEEecccc-cCCceEEEEecCCCceeEEEEecc
Confidence 47999999875432222122223445789999999999998 778999999995 789999999865433 356789
Q ss_pred CccccccceEEEEEEeCCCCCceEEEeccCcCCCCCCCCCccccEEEEEEeCCCcc-ceEEeeeecCCC-cCCCcceeEE
Q psy1434 78 EQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETY-KFRRLHTRDGKN-SKARFGLSLC 155 (357)
Q Consensus 78 ~~~~s~fG~sva~~D~ngDG~~DlvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~-~~~~~~~~~g~~-~~~~fG~sva 155 (357)
++.++|||++|+++|+|+||++||+||||++.. ..+.|+||||.+.+... .|.....+.|.. ..++||.+|+
T Consensus 267 ~~~g~~fG~sva~~D~ngDG~~DlvVGap~~~~------~~~~G~v~vy~~~g~g~~~~~~~~~l~g~~~~~~~FG~sva 340 (597)
T 3v4v_A 267 KKLGSYFGASVCAVDLNADGFSDLLVGAPMQST------IREEGRVFVYINSGSGAVMNAMETNLVGSDKYAARFGESIV 340 (597)
T ss_dssp SSTTCCTTSEEEEECTTCSSSCEEEEEETTCCS------SSCCCEEEEEEECSSSSCEECCSSCBCTTCCTTCCTTSCEE
T ss_pred cccCCCCcceEEEEeeCCCCCceEEEEcccccC------CCcCCeEEEEEECCCCcceeccceEEeCCcccccccccccc
Confidence 999999999999999999999999999999852 12479999999887632 254444566653 4689999999
Q ss_pred eeccCCCCCCceeEEcCCCCCCCCccEEEEEeCCCCCCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCCcE
Q psy1434 156 NLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDL 235 (357)
Q Consensus 156 ~~gDiN~DG~~Dl~VgaP~~~~~~~G~Vyiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl 235 (357)
.+||||+||++||+||||+++ ...|+||||+++..|+...++|+|.+.... +..+.||.++++.+|+|+||++||
T Consensus 341 ~~gDlngDG~~Dl~VGap~~~-~~~G~vyv~~g~~~g~~~~~sq~i~g~~~~----~~~~~fG~sv~g~~DlngDG~~DL 415 (597)
T 3v4v_A 341 NLGDIDNDGFEDVAIGAPQED-DLQGAIYIYNGRADGISSTFSQRIEGLQIS----KSLSMFGQSISGQIDADNNGYVDV 415 (597)
T ss_dssp CCCCSSCSSSCCEEEEETTHH-HHTBEEEEECEETTEECSSCSEEEEGGGTC----TTCCSEEEEEEEEECSSSSSSCEE
T ss_pred cccccCCCCCcceEEeccccc-CCCCcEEEecCCCCCccccccEEEeccccc----ccccccceeEEcccccCCCCCccE
Confidence 899999999999999999863 357999999999888887888999876543 257899999998899999999999
Q ss_pred EEeecCCCcEEEEccCCCCCCCCCCCeEEEEEcccccccCCCceeeecccccccce------------------------
Q psy1434 236 VIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQ------------------------ 291 (357)
Q Consensus 236 ~VGa~~~~~v~~~rsrpv~~~~~~~G~v~~~~~~~~~~~~~~~q~i~~~~~~c~~~------------------------ 291 (357)
+|||+++++|++||+||| +.+..++ +.| .+|+++.++|...
T Consensus 416 ~VGa~~~~~v~~lrsrpv----------~~v~~~~-~~p----~~i~~~~~~C~~~~~~~~c~~~~~C~~~~~~~~~~~~ 480 (597)
T 3v4v_A 416 AVGAFRSDSAVLLRTRPV----------VIVDASL-SHP----ESVNRTKFDCVENGWPSVCIDLTLCFSYKGKEVPGYI 480 (597)
T ss_dssp EEEEGGGTEEEEECBCCE----------EEEEEEE-ECC----SBCCTTCCCSCBTTBCCCEEEEEEEEEEECTTCCSEE
T ss_pred EEeccCCCeEEEEccCcE----------EEEEEEE-eCC----cccCcccccCccCCcceEEEEEEEEEEEeccCCCCce
Confidence 999999999999999999 8888877 444 3588888888531
Q ss_pred eEEEEEEEccCCCC--CCceEEecCCCceEEEEEEEEeCCCCCeEEEEEEeecCCcceecceeeeee
Q psy1434 292 ELNVQILLDSKKPK--SPRMFFLSDEGKNVINQTLLLIKGTQFCKSTVDMVCEAERPLCTPITPAVS 356 (357)
Q Consensus 292 ~~~~~~~ld~~~~~--~~r~~f~~~~~~~~~~~~~~l~~~~~~C~~~~~~~~~~~~D~l~pi~~~~~ 356 (357)
.|+|+++||..|++ .+|++|+++..++.+++++.|..+++.|+++++||++|++|||+||.|+|+
T Consensus 481 ~l~~~l~lD~~r~~~~~~R~~F~~~~~~~~~~~~~~l~~~~~~C~~~~~~l~~~~~D~l~PI~~~l~ 547 (597)
T 3v4v_A 481 VLFYNMSLDVNRKAESPPRFYFSSNGTSDVITGSIQVSSREANCRTHQAFMRKDVRDILTPIQIEAA 547 (597)
T ss_dssp EEEEEEESSCSCCSSCCCSEECSSSTTCSEEEEEEEEESSSCEEEEEEEEECSSCCCCSSCEEEEEE
T ss_pred EEEEEEEEccccccCCCCCeEECCCCCccEEEEEEEecCCCCeeEEEEEEecCCCCccccCEEEEEE
Confidence 46777888886642 589999754344677888988877778999999999999999999999986
No 2
>3vi3_A Integrin alpha-5; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_A*
Probab=100.00 E-value=1.6e-55 Score=454.31 Aligned_cols=314 Identities=35% Similarity=0.593 Sum_probs=260.3
Q ss_pred CCCCCCCcceeeEEEEeec--CCCeEEEeecCCCCeeeEEEEEEcC-CceeeeccCCccccccceEEEEEEeCCCCCceE
Q psy1434 25 PPTDDGSYMGYSVASGFFS--GESGVAVGIPRGARLLGKVALYTTN-MTNLQNITGEQLGAYFAYAVTTSDVDGDGADDL 101 (357)
Q Consensus 25 ~~~~~~sy~G~sva~gd~~--g~~~~vvGaP~~~~~~G~V~i~~~~-~~~~~~~~g~~~~s~fG~sva~~D~ngDG~~Dl 101 (357)
...++++||||||+++||+ +..++++|||++....|+|++|... ....+.+.|+++++|||++|+++|+|+||++||
T Consensus 223 ~~~~~~sy~G~sva~gd~ngDg~~DlvvGaP~~~~~~G~V~v~~~~~~~~~~~l~G~q~gs~FG~sva~~D~NgDG~~DL 302 (632)
T 3vi3_A 223 SSIYDDSYLGYSVAVGEFSGDDTEDFVAGVPKGNLTYGYVTILNGSDIRSLYNFSGEQMASYFGYAVAATDVNGDGLDDL 302 (632)
T ss_dssp CGGGCSCCBTSSEEEECCSSSSSCEEEEEEEEEETTEEEEEEECSSSCCEEEEEECSSTTSCTTSEEEEECCSSSSSCEE
T ss_pred ccccCCCCcccEEEEEEecCCCCeEEEEeccccCCccCEEEEEECCCCcEEEEEecccccCcCcceEEEEecCCCCccce
Confidence 3346789999999999998 6789999999964456999999853 344567889999999999999999999999999
Q ss_pred EEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCCcCCCcceeEEeeccCCCCCCceeEEcCCCCCCCCcc
Q psy1434 102 IIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERG 181 (357)
Q Consensus 102 vvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~~~~~fG~sva~~gDiN~DG~~Dl~VgaP~~~~~~~G 181 (357)
+||||+++.........+.|+||||.+......|.....+.|.+..++||.+++.+||+|+||++|||||||+++....|
T Consensus 303 vVGAP~~~~~~~~g~~~~~G~VyVy~g~~~g~~~~~~~~l~G~~~~~~FG~sva~~gDlngDG~~DlaVGap~~~~~~~G 382 (632)
T 3vi3_A 303 LVGAPLLMDRTPDGRPQEVGRVYVYLQHPAGIEPTPTLTLTGHDEFGRFGSSLTPLGDLDQDGYNDVAIGAPFGGETQQG 382 (632)
T ss_dssp EEEETTCEEECTTCCEEECCEEEEECBCSSCBCSSCSEEEECCSTTCCGGGEEEEEESSSSSSSCEEEEEETTCSTTSSC
T ss_pred eeecccccccccccccccCCEEEEEEcCCCCccccCceEecCccccCCCceEEEeeeccCCCCCcCEEEeCCcCCcCCCc
Confidence 99999985432111123579999999887633455555677777779999999999999999999999999987556789
Q ss_pred EEEEEeCCCCCCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCCcEEEeecCCCcEEEEccCCCCCCCCCCC
Q psy1434 182 VVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDGPNERG 261 (357)
Q Consensus 182 ~Vyiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl~VGa~~~~~v~~~rsrpv~~~~~~~G 261 (357)
+||||+++..|+...++|+|.+.... .+..+.||.++++++|+|+||++||+|||+++++|++||+|||
T Consensus 383 ~Vyv~~G~~~Gl~~~~sq~i~g~~~~---~~~~~~FG~sla~~~DlngDG~~DL~VGa~g~d~v~llrsrpv-------- 451 (632)
T 3vi3_A 383 VVFVFPGGPGGLGSKPSQVLQPLWAA---SHTPDFFGSALRGGRDLDGNGYPDLIVGSFGVDKAVVYRGRPI-------- 451 (632)
T ss_dssp EEEEECEETTEECSSCSEEECCSSCC---CSSCCCTTSSEEESSCCSSSSCCCEEEEEGGGTEEEEECBCCE--------
T ss_pred eEEEEecCCCCCCcccceEEecCccc---cccccccceeEEeeeccCCCCceeEEEecCCCceEEEEcCCcE--------
Confidence 99999999988888888999876532 1257899999999889999999999999999999999999999
Q ss_pred eEEEEEcccccccCCCceeeecccccccce------------------------eEEEEEEEccCCC--CCCceEEecCC
Q psy1434 262 VVYIYHGSPIGARENPSQIITAEEVNFGLQ------------------------ELNVQILLDSKKP--KSPRMFFLSDE 315 (357)
Q Consensus 262 ~v~~~~~~~~~~~~~~~q~i~~~~~~c~~~------------------------~~~~~~~ld~~~~--~~~r~~f~~~~ 315 (357)
+.+..++.|.|. .|++++++|.+. .|+|+++||..|+ ..+|++|.+ +
T Consensus 452 --v~v~~~~~~~P~----~i~~~~~~C~~~~~~~~c~~~~~C~~~~~~~~~~~~~~~~~l~lD~~~~~~~~~R~~f~~-~ 524 (632)
T 3vi3_A 452 --VSASASLTIFPA----MFNPEERSCSLEGNPVACINLSFCLNASGKHVADSIGFTVELQLDWQKQKGGVRRALFLA-S 524 (632)
T ss_dssp --EEEEEEEEESSC----EECTTCCCEESSSSEECEEEEEEEEEEECSSSCSEEEEEEEEEETTTTTTTSCCCEEETT-T
T ss_pred --EEEEeEEEECch----hcCcccccccCCCCceEEEEEEEEEEEecCCCCCceeEEEEEEEeccccccCcCceEEcC-C
Confidence 888888888774 599998888541 4667788898763 258999964 4
Q ss_pred CceEEEEEEEEeCCCC-CeEEEEEEeec--CCcceecceeeeee
Q psy1434 316 GKNVINQTLLLIKGTQ-FCKSTVDMVCE--AERPLCTPITPAVS 356 (357)
Q Consensus 316 ~~~~~~~~~~l~~~~~-~C~~~~~~~~~--~~~D~l~pi~~~~~ 356 (357)
+.+.+++++.|..+.. .|+++++||++ |+||||+||.|+|+
T Consensus 525 ~~~~~~~~~~l~~~~~~~C~~~~~~l~~~~~~~D~l~PI~~~l~ 568 (632)
T 3vi3_A 525 RQATLTQTLLIQNGAREDCREMKIYLRNESEFRDKLSPIHIALN 568 (632)
T ss_dssp SSSEEEEEEEEETTCCCEEEEEEEEECCCSCCSCCSSCEEEEEE
T ss_pred CCceEEEEEEEcCCCCCeEEEEEEEEeccCCccccccCEEEEEE
Confidence 4556788888886654 69999999999 99999999999986
No 3
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=100.00 E-value=1.1e-53 Score=465.42 Aligned_cols=323 Identities=27% Similarity=0.413 Sum_probs=269.9
Q ss_pred CcceEEEEecCCCCceEEeecCCCCCCCCcceeeEEEEeecCCCeEEEeecCCCCeeeEEEEEEcCCc---eeeeccCCc
Q psy1434 3 HSGQVISQNLYDRPEFKATKEGPPTDDGSYMGYSVASGFFSGESGVAVGIPRGARLLGKVALYTTNMT---NLQNITGEQ 79 (357)
Q Consensus 3 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~sy~G~sva~gd~~g~~~~vvGaP~~~~~~G~V~i~~~~~~---~~~~~~g~~ 79 (357)
-+|++++|..++...+.+.......+.++||||||++|++++..++|+||||+ ++.|+|++|+.+.. ..+.+.|++
T Consensus 356 w~G~v~~~~~~~~~~~~~~~~~~~~~~~sylGySVa~~~~~g~~~~v~GAP~~-~~~G~V~i~~~~~~~~~~~~~~~g~~ 434 (1095)
T 3k6s_A 356 WSGGAFLYPPNMSPTFINMSQENVDMRDSYLGYSTELALWKGVQSLVLGAPRY-QHTGKAVIFTQVSRQWRMKAEVTGTQ 434 (1095)
T ss_dssp TTBEEEECCSSSCCEEECCCSSCCCCCSCCBTSSEECCCCSSSCEEEEEETTG-GGTCEEEEEECCTTTCCEEEEECCSS
T ss_pred ccceeEEecCCCcceeeccccccccccccccceeeEEeccCCceEEEEEcccc-cccceEEEEEecCCcceEEeecccCc
Confidence 46999999987777777766655667899999999999999888999999995 79999999987533 345688999
Q ss_pred cccccceEEEEEEeCCCCCceE-EEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCC--cCCCcceeEEe
Q psy1434 80 LGAYFAYAVTTSDVDGDGADDL-IIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKN--SKARFGLSLCN 156 (357)
Q Consensus 80 ~~s~fG~sva~~D~ngDG~~Dl-vvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~--~~~~fG~sva~ 156 (357)
.++|||++|+++|+|+||++|| +||||+++.. ...|+||||.+..+...|.....+.|.. ..++||.+++.
T Consensus 435 ~gs~fG~sva~~DvngDG~~DllvvGAP~~~~~------~~~G~Vyvy~~~~~~~~~~~~~~l~g~~~~~~~~FG~sva~ 508 (1095)
T 3k6s_A 435 IGSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQ------TRGGQVSVCPLPRGWRRWWCDAVLYGEQGHPWGRFGAALTV 508 (1095)
T ss_dssp TTSCTTSCEEEECSSSSSSCCEEEEECSSCCSS------CCCBCEEEEECCSSTTCCCSCSSCCCCCSCSSCCBTSCEEE
T ss_pred ccCcCCceEEEEEeCCCCCccEEEECCccccCc------CCCCEEEEEEeCCCCcceeeeEEeecccCCccccCccceEe
Confidence 9999999999999999999999 8999998642 2479999999876534576555666654 47999999999
Q ss_pred eccCCCCCCceeEEcCCCCCCCCccEEEEEeCCCC-CCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCCcE
Q psy1434 157 LGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPI-GARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDL 235 (357)
Q Consensus 157 ~gDiN~DG~~Dl~VgaP~~~~~~~G~Vyiy~g~~~-g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl 235 (357)
+||+|+||++||+||||+++ ...|+||||++++. |+...+.|++.+.... ...++||.++++.+|+|+||++||
T Consensus 509 ~gD~NgDG~~Dl~VGAP~~~-~~~G~vyi~~g~~~~g~~~~~~q~l~~~~~~----~~~~~FG~sv~~~~D~dgDG~~DL 583 (1095)
T 3k6s_A 509 LGDVNGDKLTDVVIGAPGEE-ENRGAVYLFHGVLGPSISPSHSQRIAGSQLS----SRLQYFGQALSGGQDLTQDGLVDL 583 (1095)
T ss_dssp EECSSSSSCCEEEEECTTTT-TSCCBEEEEEBCSSSCBCSSCSBCCBTTSSC----TTCSSEEEEEEECCCCSCSSSCEE
T ss_pred ecccCCCCCcCEEEeCCcCC-CCCCEEEEecCCCCCCccccceEEeecCCCC----ccccccCceeecccccCCCCCccE
Confidence 99999999999999999875 57899999999987 7777788888766442 246889999998899999999999
Q ss_pred EEeecCCCcEEEEccCCCCCCCCCCCeEEEEEcccccccCCCceeeecccccccce------------------------
Q psy1434 236 VIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQ------------------------ 291 (357)
Q Consensus 236 ~VGa~~~~~v~~~rsrpv~~~~~~~G~v~~~~~~~~~~~~~~~q~i~~~~~~c~~~------------------------ 291 (357)
+||| .|+|++||+||+ ..+..+..|.|. .|+++.++|..+
T Consensus 584 ~VGa--~G~v~v~r~~pv----------~~~~~~~~~~p~----~i~~~~~~C~~~~~~~~~~~~~~~Cf~~~~~~~~~~ 647 (1095)
T 3k6s_A 584 AVGA--RGQVLLLRTRPV----------LWVGVSMQFIPA----EIPRSAFECREQVVSEQTLVQSNICLYIDKRSKNLL 647 (1095)
T ss_dssp EEEE--SSCEEEEEBCCB----------CCEEEEEEESSC----SCCSTTSSCCSSSCCCCEEEEEEEEEEECCCTTTCS
T ss_pred EEEc--CCCeeEeccCCc----------eEEeEEEEECcc----ccCccccCcccCCCCceEEEEEEEEEEEeCcCcccc
Confidence 9999 489999999999 667777777764 377777777421
Q ss_pred -------eEEEEEEEccCCCCCCceEEecCCCceEEEEEEEEeCCCCCeEEEEEEeecCCcceecceeeeee
Q psy1434 292 -------ELNVQILLDSKKPKSPRMFFLSDEGKNVINQTLLLIKGTQFCKSTVDMVCEAERPLCTPITPAVS 356 (357)
Q Consensus 292 -------~~~~~~~ld~~~~~~~r~~f~~~~~~~~~~~~~~l~~~~~~C~~~~~~~~~~~~D~l~pi~~~~~ 356 (357)
.|+|+++||..| ..+|++|.+ ++.+.+++++.|..+ +.|+++++||++|++|||+||.|+|+
T Consensus 648 ~~~~~~~~l~~~l~lD~~r-~~~R~~f~~-~~~~~~~~~~~l~~~-~~C~~~~~~l~~~~~D~~~pI~~~l~ 716 (1095)
T 3k6s_A 648 GSRDLQSSVTLDLALDPGR-LSPRATFQE-TKNRSLSRVRVLGLK-AHCENFNLLLPSCVEDSVTPITLRLN 716 (1095)
T ss_dssp STTTSCEEEEEEEEESTTS-SSCCCEETT-TCSSEEEEEEEECSS-CEEEEEEEEECSCCSCCSSCEEEEEE
T ss_pred cccccceeEEEEEEEcCCC-ccCCeEEcC-CCCceEEEEEEecCC-CeEEEEEEEEecccccccCcEEEEEE
Confidence 277888899877 578999964 445578888888766 66999999999999999999999986
No 4
>3fcs_A Integrin, alpha 2B; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens}
Probab=100.00 E-value=7.8e-53 Score=451.84 Aligned_cols=310 Identities=33% Similarity=0.576 Sum_probs=251.6
Q ss_pred CCCCCCCcceeeEEEEeecC--CC-eEEEeecCCCCeeeEEEEEEcCCceeeeccCCccccccceEEEEEEeCCCCCceE
Q psy1434 25 PPTDDGSYMGYSVASGFFSG--ES-GVAVGIPRGARLLGKVALYTTNMTNLQNITGEQLGAYFAYAVTTSDVDGDGADDL 101 (357)
Q Consensus 25 ~~~~~~sy~G~sva~gd~~g--~~-~~vvGaP~~~~~~G~V~i~~~~~~~~~~~~g~~~~s~fG~sva~~D~ngDG~~Dl 101 (357)
++.++++||||||++|||++ .. ++++|||++..+.|+|++|.......+.+.|++.++|||++|+++|+|+||++||
T Consensus 227 ~~~~~~sy~G~sva~gD~~gDG~~d~~vvGaPr~~~~~G~V~i~~~~~~~~~~l~G~q~gs~fG~sva~gD~NgDG~~DL 306 (959)
T 3fcs_A 227 NPEYFDGYWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILDSYYQRLHRLRGEQMASYFGHSVAVTDVNGDGRHDL 306 (959)
T ss_dssp CGGGTTCCTTSEEEEECCSSCSSSCEEEEEETTHHHHTCEEEEECTTCCEEEEEECSSTTSCTTSEEEEECCSSSSSCEE
T ss_pred CcccCCCccccEEEEEEECCCCCeeEEEEECCcccCCcceEEEECCCceEEEEeccccCCCCceeEEEEEEecCCCccce
Confidence 34568899999999999993 34 7999999964467999998766666778999999999999999999999999999
Q ss_pred EEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEe-eeecCCCcCCCcceeEEeeccCCCCCCceeEEcCCCCCCCCc
Q psy1434 102 IIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRL-HTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNER 180 (357)
Q Consensus 102 vvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~-~~~~g~~~~~~fG~sva~~gDiN~DG~~Dl~VgaP~~~~~~~ 180 (357)
+||||++..........+.|+||||.+..+...|... ..+.|.+..++||.+++.+||+|+||++||+||||+++..+.
T Consensus 307 vVGAP~~~~~~~~~~~~~~G~VyV~~~~~g~~~~~~~~~~l~G~~~~~~FG~sva~~gD~ngDG~~Dl~Vgap~~~~~~~ 386 (959)
T 3fcs_A 307 LVGAPLYMESRADRKLAEVGRVYLFLQPRGPHALGAPSLLLTGTQLYGRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGR 386 (959)
T ss_dssp EEEETTCEEEETTEEEEECBEEEEECCCSTTCCCCSCSEEEECCSTTCCBTSEEEEEECSSCSSSCEEEEEETTCSTTSS
T ss_pred eEeccccccccccccccCCceEEEEecCCCCCcccccceEEecccCCCCCceeEEeeecCCCCCCcceEEecccCCCCCC
Confidence 9999998642111111357999999986432344433 456787778999999998999999999999999998755678
Q ss_pred cEEEEEeCCCCCCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCCcEEEeecCCCcEEEEccCCCCCCCCCC
Q psy1434 181 GVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDGPNER 260 (357)
Q Consensus 181 G~Vyiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl~VGa~~~~~v~~~rsrpv~~~~~~~ 260 (357)
|+||||++++.|+...+.|++.+... ..+.||.++++.+|+|+||++||+|||+++++|++||+|||
T Consensus 387 G~Vyvy~g~~~g~~~~~~q~~~~~~~------~~~~fG~sv~~~gDlngDG~~Dl~VGa~g~g~v~~~rsrpv------- 453 (959)
T 3fcs_A 387 GQVLVFLGQSEGLRSRPSQVLDSPFP------TGSAFGFSLRGAVDIDDNGYPDLIVGAYGANQVAVYRAQPV------- 453 (959)
T ss_dssp CEEEEECEETTEECSSCSEEEECCSC------TTCCTTSSEEEEECSSSSSSCEEEEEEGGGTEEEEECBCCE-------
T ss_pred ceEEEEecCCCCcccccceeeccCcC------CcccccceeeeeeccCCCCCCCEEEecCCCCeEEEEecCCc-------
Confidence 99999999988888778888875421 35899999998889999999999999999999999999999
Q ss_pred CeEEEEEcccccccCCCceeeecccccccce--------------------------eEEEEEEEccCCCC-CCceEEec
Q psy1434 261 GVVYIYHGSPIGARENPSQIITAEEVNFGLQ--------------------------ELNVQILLDSKKPK-SPRMFFLS 313 (357)
Q Consensus 261 G~v~~~~~~~~~~~~~~~q~i~~~~~~c~~~--------------------------~~~~~~~ld~~~~~-~~r~~f~~ 313 (357)
+.+..++.+.| . |++++++|... .++|+++||..|++ .+|++|.+
T Consensus 454 ---v~v~~~~~~~p----~-i~~~~~~C~~~~~~~~~~C~~~~~C~~~~~~~~~~~i~~~~~l~lD~~~~r~~~R~~f~~ 525 (959)
T 3fcs_A 454 ---VKASVQLLVQD----S-LNPAVKSCVLPQTKTPVSCFNIQMCVGATGHNIPQKLSLNAELQLDRQKPRQGRRVLLLG 525 (959)
T ss_dssp ---EEEEEEEEECS----C-BCTTCCCEECSSSCCEEEEEEEEEEEEEECTTCCSSCEEEEEEEETTTSCGGGCSEEETT
T ss_pred ---eEEEeEEEecC----C-cCccccCcccCCCCceEEEEEEEEEEeEecCCCCceEEEEEEEEEcccccCcCCceEEcC
Confidence 88888877755 3 88887777431 35567788887643 58999964
Q ss_pred CCCceEEEEEEEEeC-CCCCeEEEEEEeec--CCcceecceeeeee
Q psy1434 314 DEGKNVINQTLLLIK-GTQFCKSTVDMVCE--AERPLCTPITPAVS 356 (357)
Q Consensus 314 ~~~~~~~~~~~~l~~-~~~~C~~~~~~~~~--~~~D~l~pi~~~~~ 356 (357)
++.+.+++++.|.. +.+.|+++++||++ ++||||+||.|+|+
T Consensus 526 -~~~~~~~~~~~l~~~~~~~C~~~~~~l~~~~~~~D~l~PI~~~l~ 570 (959)
T 3fcs_A 526 -SQQAGTTLNLDLGGKHSPICHTTMAFLRDEADFRDKLSPIVLSLN 570 (959)
T ss_dssp -TCSSEEEEEEECTTCSSCEEEEEEEEECCGGGCCCCSSCEEEEEE
T ss_pred -CCCceEEEEEEEcCCCCceEEEEEEEEeccccccceeeeEEEEEE
Confidence 44556777788764 45679999999997 59999999999986
No 5
>3ije_A Integrin alpha-V; integrin structure, activation, EGF domains, FLIM, cell SIGN cell adhesion, cleavage on PAIR of basic residues; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 4g1e_A* 4g1m_A* 1jv2_A* 1l5g_A* 1m1x_A* 1u8c_A*
Probab=100.00 E-value=2e-51 Score=442.47 Aligned_cols=314 Identities=33% Similarity=0.602 Sum_probs=258.9
Q ss_pred cCCCCCCCCcceeeEEEEeec--CCCeEEEeecCCCCeeeEEEEEEcC-CceeeeccCCccccccceEEEEEEeCCCCCc
Q psy1434 23 EGPPTDDGSYMGYSVASGFFS--GESGVAVGIPRGARLLGKVALYTTN-MTNLQNITGEQLGAYFAYAVTTSDVDGDGAD 99 (357)
Q Consensus 23 ~~~~~~~~sy~G~sva~gd~~--g~~~~vvGaP~~~~~~G~V~i~~~~-~~~~~~~~g~~~~s~fG~sva~~D~ngDG~~ 99 (357)
+..+.++++||||||++|||+ |..|+++|||++..+.|+|++|... ....+.+.|++.++|||++++++|+|+||++
T Consensus 212 ~~~~~~~~sy~G~sVa~gD~ngDG~~DlvvGaP~~~~~~G~V~i~~~~~~~~~~~~~g~~~gs~fG~sva~~D~ngDG~~ 291 (967)
T 3ije_A 212 TAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYDGKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYA 291 (967)
T ss_dssp CCCGGGCSCCBTSEEEEECCSSSSSCEEEEEETTHHHHTCEEEEECSSSSCEEEEEECSSTTSCTTSEEEEECTTSSSCC
T ss_pred cCCCccCCCccceEEEEEEECCCCCeEEEEEecccCCCCcEEEEEeCCCceeeeEecccccCCceeEEEEEEecCCCCCc
Confidence 334456789999999999999 6789999999965578999999753 3345678899999999999999999999999
Q ss_pred eEEEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCCcCCCcceeEEeeccCCCCCCceeEEcCCCCCCCC
Q psy1434 100 DLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNE 179 (357)
Q Consensus 100 DlvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~~~~~fG~sva~~gDiN~DG~~Dl~VgaP~~~~~~ 179 (357)
||+||||++..........+.|+||||.+.+. +.|. ...+.|....++||.+++.+||+|+||++||+||||+++...
T Consensus 292 DLvVgaP~~~~~~~~g~~~~~G~v~vy~~~g~-g~f~-~~~l~g~~~~~~fG~sva~~gDlngDG~~Dl~VGap~~~~~~ 369 (967)
T 3ije_A 292 DVFIGAPLFMDRGSDGKLQEVGQVSVSLQRAS-GDFQ-TTKLNGFEVFARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDK 369 (967)
T ss_dssp EEEEEETTCEEECTTSCEEECCEEEEEECCSS-SCCE-EEEEECSSTTSCTTSEEEEEESTTCSSSCEEEEEETTCSSSS
T ss_pred eEEEEcccccccccccccccCCcEEEEEECCC-Ccee-eeeccCccccCCCcceEEeeeccCCCCCcceEEeccccCCCC
Confidence 99999999864321111145799999998775 5677 555677777899999999899999999999999999854467
Q ss_pred ccEEEEEeCCCCCCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCCcEEEeecCCCcEEEEccCCCCCCCCC
Q psy1434 180 RGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDGPNE 259 (357)
Q Consensus 180 ~G~Vyiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl~VGa~~~~~v~~~rsrpv~~~~~~ 259 (357)
.|+||||++++.|++..+.|++.+.... .+..+.||+++++.+|+|+||++||+||+++++.|++||+|||
T Consensus 370 ~G~vyiy~g~~~G~~~~~sq~i~~~~~~---~~~~~~FG~sv~~~~DldgDG~~DL~VGa~g~~~v~l~rsrpv------ 440 (967)
T 3ije_A 370 KGIVYIFNGRSTGLNAVPSQILEGQWAA---RSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVDRAILYRARPV------ 440 (967)
T ss_dssp CCEEEEEEEETTEECSSCSEEEECCCCC---SSSCCCEEEEEEEEECCSSSSSCEEEEEEGGGTEEEEECBCCE------
T ss_pred CceEEEEecCCCCCcccceeeecccccc---ccccccccceeeeeEccCCCCcccEEEeccCCCeEEEEecCCe------
Confidence 8999999999988888889998876432 1246899999998899999999999999999999999999999
Q ss_pred CCeEEEEEcccccccCCCceeeecccccccce---------------------------eEEEEEEEccCCCC--CCceE
Q psy1434 260 RGVVYIYHGSPIGARENPSQIITAEEVNFGLQ---------------------------ELNVQILLDSKKPK--SPRMF 310 (357)
Q Consensus 260 ~G~v~~~~~~~~~~~~~~~q~i~~~~~~c~~~---------------------------~~~~~~~ld~~~~~--~~r~~ 310 (357)
+.+..++.|.|. .|++++++|.+. .|+|+++||..|++ .+|++
T Consensus 441 ----v~v~~~~~~~p~----~i~~~~~~C~~~~~~~~~~c~~~~~C~~~~~~~~~~~~~~l~~~l~lD~~r~~~~~~R~~ 512 (967)
T 3ije_A 441 ----ITVNAGLEVYPS----ILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPRKLNFQVELLLDKLKQKGAIRRAL 512 (967)
T ss_dssp ----EEEEEEEEESSC----EECSSCCCSBCSSSSSBCEEEEEEEEEEEECSSSCCSEEEEEEEEEESHHHHTTSCCCEE
T ss_pred ----EEEEEEEEEChh----hcCccccCcccCCCccceEEEEEEEEEEEecccCCCCcceEEEEEEEcCccccCCCCCeE
Confidence 888888888764 588888888541 46677788876532 48999
Q ss_pred EecCCCceEEEEEEEEeCC-CCCeEEEEEEeec--CCcceecceeeeee
Q psy1434 311 FLSDEGKNVINQTLLLIKG-TQFCKSTVDMVCE--AERPLCTPITPAVS 356 (357)
Q Consensus 311 f~~~~~~~~~~~~~~l~~~-~~~C~~~~~~~~~--~~~D~l~pi~~~~~ 356 (357)
|.+ ++.+.+++++.|..+ .+.|+++++||++ |++|||+||.|+|+
T Consensus 513 f~~-~~~~~~~~~~~l~~~~~~~C~~~~~~l~~~~~~~D~l~pI~~~l~ 560 (967)
T 3ije_A 513 FLY-SRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFME 560 (967)
T ss_dssp ETT-TCSSEEEEEEEEESSSCCEEEEEEEEECCTTTCCCCSSCEEEEEE
T ss_pred EcC-CCCceEEEEEEEeCCCCCeEEEEEEEEeccCCcceeeccEEEEEE
Confidence 964 455677888888754 4579999999997 99999999999986
No 6
>3t3p_A Integrin alpha-IIB; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3fcu_A* 3nif_A* 3nid_A* 3t3m_A* 3nig_A* 2vdr_A* 2vc2_A* 2vdk_A* 2vdm_A* 2vdn_A* 2vdl_A* 2vdp_A* 2vdq_A* 2vdo_A* 1txv_A* 1ty3_A* 1ty5_A* 1ty6_A* 1ty7_A* 1tye_A*
Probab=100.00 E-value=5.7e-44 Score=355.49 Aligned_cols=223 Identities=39% Similarity=0.706 Sum_probs=187.4
Q ss_pred CCCCCCCcceeeEEEEeecCC---CeEEEeecCCCCeeeEEEEEEcCCceeeeccCCccccccceEEEEEEeCCCCCceE
Q psy1434 25 PPTDDGSYMGYSVASGFFSGE---SGVAVGIPRGARLLGKVALYTTNMTNLQNITGEQLGAYFAYAVTTSDVDGDGADDL 101 (357)
Q Consensus 25 ~~~~~~sy~G~sva~gd~~g~---~~~vvGaP~~~~~~G~V~i~~~~~~~~~~~~g~~~~s~fG~sva~~D~ngDG~~Dl 101 (357)
++.++++||||||++|+++++ +++|+|||++..+.|+|++|..+....+.+.|+|+++|||++|+++|+|+||.+||
T Consensus 227 ~~~~~~sylGySv~~gd~~gdg~~~~~vvGAP~~~~~~G~V~i~~~~~~~~~~l~G~q~gs~fG~sva~gDvNgDG~~DL 306 (457)
T 3t3p_A 227 NPEYFDGYWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILDSYYQRLHRLRGEQMASYFGHSVAVTDVNGDGRHDL 306 (457)
T ss_dssp CGGGTTCCTTSEEEEECCSSCTTSCEEEEEETTHHHHTCEEEEECTTCCEEEEEECSSTTSCTTSEEEEECCSSSSCCEE
T ss_pred CcccCCCcceeEEEEEEeCCCCceeEEEEcCCCCCCccceEEEEcCCCeEEEEecccccCCCCcceEEEEEeCCCCccce
Confidence 345678999999999999843 58999999965688999999766667788999999999999999999999999999
Q ss_pred EEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEe-eeecCCCcCCCcceeEEeeccCCCCCCceeEEcCCCCCCCCc
Q psy1434 102 IIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRL-HTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNER 180 (357)
Q Consensus 102 vvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~-~~~~g~~~~~~fG~sva~~gDiN~DG~~Dl~VgaP~~~~~~~ 180 (357)
+||||+++.........+.|+||||.+..+...|... ..+.|.+..++||.+|+.+||+|+||++||+||||+++....
T Consensus 307 vVGAP~~~~~~~~~~~~~~G~VyV~~g~~g~~~~~~~~~~l~G~~~~~~fG~sva~~gD~ngDG~~Dl~vgap~~~~~~~ 386 (457)
T 3t3p_A 307 LVGAPLYMESRADRKLAEVGRVYLFLQPRGPHALGAPSLLLTGTQLYGRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGR 386 (457)
T ss_dssp EEEETTCEEEETTTEEEECCEEEEECCCSSSCCCCSCSEEEECCSTTCCTTSEEEEEECSSCSSSCEEEEEETTCSTTSS
T ss_pred eeccccccccccccccCCCCEEEEEecCCCCCccccCceEEeCCcCCCCCCceEEeccCCCCCCCcceeEeccccCCCCC
Confidence 9999998542111112357999999985432345433 357788778999999998999999999999999998654678
Q ss_pred cEEEEEeCCCCCCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCCcEEEeecCCCcEEEEccCCC
Q psy1434 181 GVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAP 253 (357)
Q Consensus 181 G~Vyiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl~VGa~~~~~v~~~rsrpv 253 (357)
|+||||+++..|+...++|+|.+... ..++||.+|++.+|+|+||++||+|||+++++|++||+|||
T Consensus 387 G~vyv~~G~~~G~~~~~~q~l~~~~~------~~~~fG~sv~~~gDlngDG~~Dl~VGa~g~~~v~l~rsrpv 453 (457)
T 3t3p_A 387 GQVLVFLGQSEGLRSRPSQVLDSPFP------TGSAFGFSLRGAVDIDDNGYPDLIVGAYGANQVAVYRAQPV 453 (457)
T ss_dssp CEEEEECEETTEECSSCSEEEECSSC------TTCCTTSEEEEEECSSSSSSCEEEEEEGGGTEEEEECBCCC
T ss_pred ceEEEEeCCCCCcccCcceEEeCCcc------ccccCcceeeeeeccCCCCCccEEEecCCCCeEEEeCCCcE
Confidence 99999999998888778888876421 35899999998889999999999999999999999999999
No 7
>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A*
Probab=100.00 E-value=6.6e-33 Score=284.68 Aligned_cols=221 Identities=26% Similarity=0.480 Sum_probs=171.2
Q ss_pred CcceeeEEEEeecCCCeEEEeecCCCCeeeEEEEEEcCCceeee----ccCCccccccceEEEEEEeCCCCCceEEEecc
Q psy1434 31 SYMGYSVASGFFSGESGVAVGIPRGARLLGKVALYTTNMTNLQN----ITGEQLGAYFAYAVTTSDVDGDGADDLIIGAP 106 (357)
Q Consensus 31 sy~G~sva~gd~~g~~~~vvGaP~~~~~~G~V~i~~~~~~~~~~----~~g~~~~s~fG~sva~~D~ngDG~~DlvvGaP 106 (357)
...|+|++ +.. +.+++|||+.+.|.|.|++|..+...+.. ..+++.++|||++|+++|+|+||..|||+|||
T Consensus 165 ~q~G~Sa~---~~~-d~~v~GApG~~~w~G~v~~~~~~~~~~~~~~~~~~~~~~~sy~GySva~gD~ngDG~~DlvvGAP 240 (597)
T 3v4v_A 165 CQAGISSF---YTK-DLIVMGAPGSSYWTGSLFVYNITTNKYKAFLDKQNQVKFGSYLGYSVGAGHFRSQHTTEVVGGAP 240 (597)
T ss_dssp CCBTSSEE---ECS-SEEEEEETTHHHHTBEEEEEETTTTBCCBBCCTTCCSCTTCCBTSSEEEECSSCTTSCEEEEEET
T ss_pred ccCceeeE---ecC-CceEEccccccccccceEEEEccCceeeecccccccccccCcCccEEEEEEECCCCCeEEEEecc
Confidence 34455543 333 47899999988899999999876544432 23457889999999999999999999999999
Q ss_pred CcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCCcCCCcceeEEeeccCCCCCCceeEEcCCCCC-CCCccEEEE
Q psy1434 107 LYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDG-PNERGVVYI 185 (357)
Q Consensus 107 ~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~~~~~fG~sva~~gDiN~DG~~Dl~VgaP~~~-~~~~G~Vyi 185 (357)
++.. .|+||||.+..+ .|.....+.|.+.+++||+++++ +|+|+||+.||+||||++. ..+.|+|||
T Consensus 241 ~~~~---------~G~V~v~~~~~~--~~~~~~~l~G~~~g~~fG~sva~-~D~ngDG~~DlvVGap~~~~~~~~G~v~v 308 (597)
T 3v4v_A 241 QHEQ---------IGKAYIFSIDEK--ELNILHEMKGKKLGSYFGASVCA-VDLNADGFSDLLVGAPMQSTIREEGRVFV 308 (597)
T ss_dssp TGGG---------TCEEEEEEECSS--SEEEEEEEECSSTTCCTTSEEEE-ECTTCSSSCEEEEEETTCCSSSCCCEEEE
T ss_pred cccC---------CceEEEEecCCC--ceeEEEEecccccCCCCcceEEE-EeeCCCCCceEEEEcccccCCCcCCeEEE
Confidence 9753 699999998754 68777778898999999999994 6999999999999999863 246799999
Q ss_pred EeCCCCCCC-CCCceEEecceeccccCCCccccceeeeccccCCCCCCCcEEEeecCCCcEEEEccCCCCCCCCCCCeEE
Q psy1434 186 YHGSPIGAR-ENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDGPNERGVVY 264 (357)
Q Consensus 186 y~g~~~g~~-~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl~VGa~~~~~v~~~rsrpv~~~~~~~G~v~ 264 (357)
|.+.+.+.. ....+.|.+. .....+||.+++..+|+|+||++||+||||.++ ...|+||
T Consensus 309 y~~~g~g~~~~~~~~~l~g~------~~~~~~FG~sva~~gDlngDG~~Dl~VGap~~~--------------~~~G~vy 368 (597)
T 3v4v_A 309 YINSGSGAVMNAMETNLVGS------DKYAARFGESIVNLGDIDNDGFEDVAIGAPQED--------------DLQGAIY 368 (597)
T ss_dssp EEECSSSSCEECCSSCBCTT------CCTTCCTTSCEECCCCSSCSSSCCEEEEETTHH--------------HHTBEEE
T ss_pred EEECCCCcceeccceEEeCC------cccccccccccccccccCCCCCcceEEeccccc--------------CCCCcEE
Confidence 998876641 1222333322 224689999999888999999999999997421 2467788
Q ss_pred EEEcccccccCCCceeeeccccc
Q psy1434 265 IYHGSPIGARENPSQIITAEEVN 287 (357)
Q Consensus 265 ~~~~~~~~~~~~~~q~i~~~~~~ 287 (357)
++.++.......++|+|......
T Consensus 369 v~~g~~~g~~~~~sq~i~g~~~~ 391 (597)
T 3v4v_A 369 IYNGRADGISSTFSQRIEGLQIS 391 (597)
T ss_dssp EECEETTEECSSCSEEEEGGGTC
T ss_pred EecCCCCCccccccEEEeccccc
Confidence 88887766666677888876643
No 8
>3vi3_A Integrin alpha-5; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_A*
Probab=99.97 E-value=3e-30 Score=266.15 Aligned_cols=220 Identities=30% Similarity=0.488 Sum_probs=166.2
Q ss_pred ceeeEE--EEeecCCCeEEEeecCCCCeeeEEEEEEcCC--------c-------eeeec--cCCccccccceEEEEEEe
Q psy1434 33 MGYSVA--SGFFSGESGVAVGIPRGARLLGKVALYTTNM--------T-------NLQNI--TGEQLGAYFAYAVTTSDV 93 (357)
Q Consensus 33 ~G~sva--~gd~~g~~~~vvGaP~~~~~~G~V~i~~~~~--------~-------~~~~~--~g~~~~s~fG~sva~~D~ 93 (357)
+|||-+ +++|..+..+++|||+.+.|.|.|+.+.... . ...+. ......+|||++|+++|+
T Consensus 161 ~g~~Q~GfSa~~~~d~~~~lGapG~~~W~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sy~G~sva~gd~ 240 (632)
T 3vi3_A 161 QGYCQGGFSAEFTKTGRVVLGGPGSYFWQGQILSATQEQIAESYYPEYLINLVQGQLQTRQASSIYDDSYLGYSVAVGEF 240 (632)
T ss_dssp TTTCCTTSEEEECTTCCEEEEETTHHHHTBEEEEECHHHHHHHCCTTSSCCCCTTCEECCCCCGGGCSCCBTSSEEEECC
T ss_pred cccCcCccceEEcCCCCEEEeCcccccccCcEEEeeccccccccCccccccccCccccccccccccCCCCcccEEEEEEe
Confidence 444433 3555544468999999889999998764210 0 00010 112357999999999999
Q ss_pred CCCCCceEEEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCCcCCCcceeEEeeccCCCCCCceeEEcCC
Q psy1434 94 DGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAP 173 (357)
Q Consensus 94 ngDG~~DlvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~~~~~fG~sva~~gDiN~DG~~Dl~VgaP 173 (357)
|+||..|||+|||++.. ..|+||||.+... .....+.|.+.+++||++|++ +|+|+||+.||+||||
T Consensus 241 ngDg~~DlvvGaP~~~~--------~~G~V~v~~~~~~----~~~~~l~G~q~gs~FG~sva~-~D~NgDG~~DLvVGAP 307 (632)
T 3vi3_A 241 SGDDTEDFVAGVPKGNL--------TYGYVTILNGSDI----RSLYNFSGEQMASYFGYAVAA-TDVNGDGLDDLLVGAP 307 (632)
T ss_dssp SSSSSCEEEEEEEEEET--------TEEEEEEECSSSC----CEEEEEECSSTTSCTTSEEEE-ECCSSSSSCEEEEEET
T ss_pred cCCCCeEEEEeccccCC--------ccCEEEEEECCCC----cEEEEEecccccCcCcceEEE-EecCCCCccceeeecc
Confidence 99999999999999853 3699999975432 223456788899999999995 7999999999999999
Q ss_pred CCCC-------CCccEEEEEeCCCCCCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCCcEEEeecCCCcEE
Q psy1434 174 YDGP-------NERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAF 246 (357)
Q Consensus 174 ~~~~-------~~~G~Vyiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl~VGa~~~~~v~ 246 (357)
++.. .+.|+||||+++..+......+.+.+.. ...+||.+++..+|+|+||++||+||||.
T Consensus 308 ~~~~~~~~g~~~~~G~VyVy~g~~~g~~~~~~~~l~G~~-------~~~~FG~sva~~gDlngDG~~DlaVGap~----- 375 (632)
T 3vi3_A 308 LLMDRTPDGRPQEVGRVYVYLQHPAGIEPTPTLTLTGHD-------EFGRFGSSLTPLGDLDQDGYNDVAIGAPF----- 375 (632)
T ss_dssp TCEEECTTCCEEECCEEEEECBCSSCBCSSCSEEEECCS-------TTCCGGGEEEEEESSSSSSSCEEEEEETT-----
T ss_pred cccccccccccccCCEEEEEEcCCCCccccCceEecCcc-------ccCCCceEEEeeeccCCCCCcCEEEeCCc-----
Confidence 7521 2469999999998766555566666432 35899999998889999999999999973
Q ss_pred EEccCCCCCCCCCCCeEEEEEcccccccCCCceeeeccc
Q psy1434 247 VLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAEE 285 (357)
Q Consensus 247 ~~rsrpv~~~~~~~G~v~~~~~~~~~~~~~~~q~i~~~~ 285 (357)
++.+..|+||+++++.......++|+|....
T Consensus 376 --------~~~~~~G~Vyv~~G~~~Gl~~~~sq~i~g~~ 406 (632)
T 3vi3_A 376 --------GGETQQGVVFVFPGGPGGLGSKPSQVLQPLW 406 (632)
T ss_dssp --------CSTTSSCEEEEECEETTEECSSCSEEECCSS
T ss_pred --------CCcCCCceEEEEecCCCCCCcccceEEecCc
Confidence 2345688999999887776667778887654
No 9
>3t3p_A Integrin alpha-IIB; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3fcu_A* 3nif_A* 3nid_A* 3t3m_A* 3nig_A* 2vdr_A* 2vc2_A* 2vdk_A* 2vdm_A* 2vdn_A* 2vdl_A* 2vdp_A* 2vdq_A* 2vdo_A* 1txv_A* 1ty3_A* 1ty5_A* 1ty6_A* 1ty7_A* 1tye_A*
Probab=99.96 E-value=1.1e-29 Score=252.60 Aligned_cols=221 Identities=29% Similarity=0.479 Sum_probs=165.0
Q ss_pred CCcceeeEE--EEeecCCCeEEEeecCCCCeeeEEEEEEcCC---------------ceeee---ccCCccccccceEEE
Q psy1434 30 GSYMGYSVA--SGFFSGESGVAVGIPRGARLLGKVALYTTNM---------------TNLQN---ITGEQLGAYFAYAVT 89 (357)
Q Consensus 30 ~sy~G~sva--~gd~~g~~~~vvGaP~~~~~~G~V~i~~~~~---------------~~~~~---~~g~~~~s~fG~sva 89 (357)
+..+|||-+ +++|..+..+++|||+.+.|.|.|+...... ..... ...+..++||||+|+
T Consensus 161 ~~~~g~~q~GfSa~~~~~~~~~lGapG~~~W~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sylGySv~ 240 (457)
T 3t3p_A 161 SWDKRYCEAGFSSVVTQAGELVLGAPGGYYFLGLLAQAPVADIFSSYRPGILLWHVSSQSLSFDSSNPEYFDGYWGYSVA 240 (457)
T ss_dssp TTCCTTCCTTSEEEECTTCEEEEEETTHHHHTCEEEEEEHHHHHHHCCTTCCSBCCTTCEECCCCCCGGGTTCCTTSEEE
T ss_pred cccccccccccccccccCCCEEEeCCccccCcceEEEeeccccccccCccccceecCCcccccccCCcccCCCcceeEEE
Confidence 344676654 5666644578999999889999998653210 00011 112345799999999
Q ss_pred EEEeCCCC-CceEEEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCCcCCCcceeEEeeccCCCCCCcee
Q psy1434 90 TSDVDGDG-ADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDF 168 (357)
Q Consensus 90 ~~D~ngDG-~~DlvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~~~~~fG~sva~~gDiN~DG~~Dl 168 (357)
++|+|+|| .+++|+|||++.. ..|+||||. . .|.....+.|++.+++||++|+ ++|+|+||+.||
T Consensus 241 ~gd~~gdg~~~~~vvGAP~~~~--------~~G~V~i~~--~---~~~~~~~l~G~q~gs~fG~sva-~gDvNgDG~~DL 306 (457)
T 3t3p_A 241 VGEFDGDLNTTEYVVGAPTWSW--------TLGAVEILD--S---YYQRLHRLRGEQMASYFGHSVA-VTDVNGDGRHDL 306 (457)
T ss_dssp EECCSSCTTSCEEEEEETTHHH--------HTCEEEEEC--T---TCCEEEEEECSSTTSCTTSEEE-EECCSSSSCCEE
T ss_pred EEEeCCCCceeEEEEcCCCCCC--------ccceEEEEc--C---CCeEEEEecccccCCCCcceEE-EEEeCCCCccce
Confidence 99999996 6689999999842 379999993 2 4666677889999999999999 579999999999
Q ss_pred EEcCCCCCC-------CCccEEEEEeCCC-CCCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCCcEEEeec
Q psy1434 169 AVGAPYDGP-------NERGVVYIYHGSP-IGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAY 240 (357)
Q Consensus 169 ~VgaP~~~~-------~~~G~Vyiy~g~~-~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl~VGa~ 240 (357)
+||||++.. .+.|+||||.+.. .+.+....+.|.+.. ...+||.+++..+|+|+||++||+||||
T Consensus 307 vVGAP~~~~~~~~~~~~~~G~VyV~~g~~g~~~~~~~~~~l~G~~-------~~~~fG~sva~~gD~ngDG~~Dl~vgap 379 (457)
T 3t3p_A 307 LVGAPLYMESRADRKLAEVGRVYLFLQPRGPHALGAPSLLLTGTQ-------LYGRFGSAIAPLGDLDRDGYNDIAVAAP 379 (457)
T ss_dssp EEEETTCEEEETTTEEEECCEEEEECCCSSSCCCCSCSEEEECCS-------TTCCTTSEEEEEECSSCSSSCEEEEEET
T ss_pred eeccccccccccccccCCCCEEEEEecCCCCCccccCceEEeCCc-------CCCCCCceEEeccCCCCCCCcceeEecc
Confidence 999997521 3579999999964 333434445666542 3589999999778999999999999997
Q ss_pred CCCcEEEEccCCCCCCCCCCCeEEEEEcccccccCCCceeeecc
Q psy1434 241 ESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAE 284 (357)
Q Consensus 241 ~~~~v~~~rsrpv~~~~~~~G~v~~~~~~~~~~~~~~~q~i~~~ 284 (357)
. .+....|+||++.++.......++|+|...
T Consensus 380 ~-------------~~~~~~G~vyv~~G~~~G~~~~~~q~l~~~ 410 (457)
T 3t3p_A 380 Y-------------GGPSGRGQVLVFLGQSEGLRSRPSQVLDSP 410 (457)
T ss_dssp T-------------CSTTSSCEEEEECEETTEECSSCSEEEECS
T ss_pred c-------------cCCCCCceEEEEeCCCCCcccCcceEEeCC
Confidence 3 234568899999988776666666777654
No 10
>3ije_A Integrin alpha-V; integrin structure, activation, EGF domains, FLIM, cell SIGN cell adhesion, cleavage on PAIR of basic residues; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 4g1e_A* 4g1m_A* 1jv2_A* 1l5g_A* 1m1x_A* 1u8c_A*
Probab=99.96 E-value=1.3e-27 Score=257.43 Aligned_cols=212 Identities=27% Similarity=0.413 Sum_probs=159.1
Q ss_pred EeecCCCeEEEeecCCCCeeeEEEEEEcCCc--------e-------eee--ccCCccccccceEEEEEEeCCCCCceEE
Q psy1434 40 GFFSGESGVAVGIPRGARLLGKVALYTTNMT--------N-------LQN--ITGEQLGAYFAYAVTTSDVDGDGADDLI 102 (357)
Q Consensus 40 gd~~g~~~~vvGaP~~~~~~G~V~i~~~~~~--------~-------~~~--~~g~~~~s~fG~sva~~D~ngDG~~Dlv 102 (357)
+.+..+..+++|||+.+.|.|.|+.+..... . ... ......++|||++|+++|+|+||..||+
T Consensus 161 a~~~~d~~~~~GapG~~~W~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sy~G~sVa~gD~ngDG~~Dlv 240 (967)
T 3ije_A 161 IDFTKADRVLLGGPGSFYWQGQLISDQVAEIVSKYDPNVYSIKYNNQLATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFV 240 (967)
T ss_dssp EEECSSSEEEEEETTHHHHTBEEEEEEHHHHHHHCCTTCSSCCCTTCEECCCCCGGGCSCCBTSEEEEECCSSSSSCEEE
T ss_pred eEeccCCcEEEeCCccccCCCcEEEEeccccccccCccccccccccccccccCCCccCCCccceEEEEEEECCCCCeEEE
Confidence 4454343589999998899999987642110 0 000 1122457999999999999999999999
Q ss_pred EeccCcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCCcCCCcceeEEeeccCCCCCCceeEEcCCCCCC-----
Q psy1434 103 IGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGP----- 177 (357)
Q Consensus 103 vGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~~~~~fG~sva~~gDiN~DG~~Dl~VgaP~~~~----- 177 (357)
+|||++.. ..|+||+|.+.+ |.....+.|.+.+++||++++ ++|+|+||+.||+||||++..
T Consensus 241 vGaP~~~~--------~~G~V~i~~~~~----~~~~~~~~g~~~gs~fG~sva-~~D~ngDG~~DLvVgaP~~~~~~~~g 307 (967)
T 3ije_A 241 SGVPRAAR--------TLGMVYIYDGKN----MSSLYNFTGEQMAAYFGFSVA-ATDINGDDYADVFIGAPLFMDRGSDG 307 (967)
T ss_dssp EEETTHHH--------HTCEEEEECSSS----SCEEEEEECSSTTSCTTSEEE-EECTTSSSCCEEEEEETTCEEECTTS
T ss_pred EEecccCC--------CCcEEEEEeCCC----ceeeeEecccccCCceeEEEE-EEecCCCCCceEEEEccccccccccc
Confidence 99998742 369999986432 445556678888999999999 589999999999999997421
Q ss_pred --CCccEEEEEeCCCCCCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCCcEEEeecCCCcEEEEccCCCCC
Q psy1434 178 --NERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYD 255 (357)
Q Consensus 178 --~~~G~Vyiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl~VGa~~~~~v~~~rsrpv~~ 255 (357)
.+.|+||||.+++.+.+. .+.+.+. ....+||.+++..+|+|+||++||+|||+. +
T Consensus 308 ~~~~~G~v~vy~~~g~g~f~--~~~l~g~-------~~~~~fG~sva~~gDlngDG~~Dl~VGap~-------------~ 365 (967)
T 3ije_A 308 KLQEVGQVSVSLQRASGDFQ--TTKLNGF-------EVFARFGSAIAPLGDLDQDGFNDIAIAAPY-------------G 365 (967)
T ss_dssp CEEECCEEEEEECCSSSCCE--EEEEECS-------STTSCTTSEEEEEESTTCSSSCEEEEEETT-------------C
T ss_pred ccccCCcEEEEEECCCCcee--eeeccCc-------cccCCCcceEEeeeccCCCCCcceEEeccc-------------c
Confidence 347999999998765443 3344332 136799999998789999999999999973 3
Q ss_pred CCCCCCeEEEEEcccccccCCCceeeecccc
Q psy1434 256 GPNERGVVYIYHGSPIGARENPSQIITAEEV 286 (357)
Q Consensus 256 ~~~~~G~v~~~~~~~~~~~~~~~q~i~~~~~ 286 (357)
+.+..|++|+|++...+....++|+|.....
T Consensus 366 ~~~~~G~vyiy~g~~~G~~~~~sq~i~~~~~ 396 (967)
T 3ije_A 366 GEDKKGIVYIFNGRSTGLNAVPSQILEGQWA 396 (967)
T ss_dssp SSSSCCEEEEEEEETTEECSSCSEEEECCCC
T ss_pred CCCCCceEEEEecCCCCCcccceeeeccccc
Confidence 4456889999998877666667788876543
No 11
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=99.95 E-value=5.4e-27 Score=255.72 Aligned_cols=220 Identities=26% Similarity=0.375 Sum_probs=165.3
Q ss_pred CcceeeEEEEeecCCCeEEEeecCCCCeeeEEEEEEcCCceee-e---ccCCccccccceEEEEEEeCCCCCceEEEecc
Q psy1434 31 SYMGYSVASGFFSGESGVAVGIPRGARLLGKVALYTTNMTNLQ-N---ITGEQLGAYFAYAVTTSDVDGDGADDLIIGAP 106 (357)
Q Consensus 31 sy~G~sva~gd~~g~~~~vvGaP~~~~~~G~V~i~~~~~~~~~-~---~~g~~~~s~fG~sva~~D~ngDG~~DlvvGaP 106 (357)
+-.|+|.+ +.. +..++|||+.+.|.|.|++|+.+...++ . ..+...++||||+|+++|++ |.++||+|||
T Consensus 333 ~q~GfSa~---~t~-d~~~~GapG~~~w~G~v~~~~~~~~~~~~~~~~~~~~~~~sylGySVa~~~~~--g~~~~v~GAP 406 (1095)
T 3k6s_A 333 AQEGFSAV---FTP-DGPVLGAVGSFTWSGGAFLYPPNMSPTFINMSQENVDMRDSYLGYSTELALWK--GVQSLVLGAP 406 (1095)
T ss_dssp CCTTSSEE---CCT-TCCEEEESCSTTTTBEEEECCSSSCCEEECCCSSCCCCCSCCBTSSEECCCCS--SSCEEEEEET
T ss_pred ccccccce---ecC-CcceEcccccCCccceeEEecCCCcceeeccccccccccccccceeeEEeccC--CceEEEEEcc
Confidence 34466643 332 2338899999999999999986544332 1 23456789999999999875 4678999999
Q ss_pred CcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCCcCCCcceeEEeeccCCCCCCcee-EEcCCCCC-CCCccEEE
Q psy1434 107 LYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDF-AVGAPYDG-PNERGVVY 184 (357)
Q Consensus 107 ~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~~~~~fG~sva~~gDiN~DG~~Dl-~VgaP~~~-~~~~G~Vy 184 (357)
++.. .|+||||.+.. ..|.....+.|.+.+++||++|+ ++|+|+||+.|| +||||.+. ....|+||
T Consensus 407 ~~~~---------~G~V~i~~~~~--~~~~~~~~~~g~~~gs~fG~sva-~~DvngDG~~DllvvGAP~~~~~~~~G~Vy 474 (1095)
T 3k6s_A 407 RYQH---------TGKAVIFTQVS--RQWRMKAEVTGTQIGSYFGASLC-SVDVDSDGSTDLVLIGAPHYYEQTRGGQVS 474 (1095)
T ss_dssp TGGG---------TCEEEEEECCT--TTCCEEEEECCSSTTSCTTSCEE-EECSSSSSSCCEEEEECSSCCSSCCCBCEE
T ss_pred cccc---------cceEEEEEecC--CcceEEeecccCcccCcCCceEE-EEEeCCCCCccEEEECCccccCcCCCCEEE
Confidence 9753 79999999874 36877778889999999999999 579999999999 89999752 25689999
Q ss_pred EEeCCCCCCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCCcEEEeecCCCcEEEEccCCCCCCCCCCCeEE
Q psy1434 185 IYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDGPNERGVVY 264 (357)
Q Consensus 185 iy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl~VGa~~~~~v~~~rsrpv~~~~~~~G~v~ 264 (357)
||.++..+......+.+.+... ....+||.+++..+|+|+||++||+||||.+ ....|+||
T Consensus 475 vy~~~~~~~~~~~~~~l~g~~~-----~~~~~FG~sva~~gD~NgDG~~Dl~VGAP~~--------------~~~~G~vy 535 (1095)
T 3k6s_A 475 VCPLPRGWRRWWCDAVLYGEQG-----HPWGRFGAALTVLGDVNGDKLTDVVIGAPGE--------------EENRGAVY 535 (1095)
T ss_dssp EEECCSSTTCCCSCSSCCCCCS-----CSSCCBTSCEEEEECSSSSSCCEEEEECTTT--------------TTSCCBEE
T ss_pred EEEeCCCCcceeeeEEeecccC-----CccccCccceEeecccCCCCCcCEEEeCCcC--------------CCCCCEEE
Confidence 9998765322122233333221 1368999999988899999999999999742 34689999
Q ss_pred EEEcccc-cccCCCceeeeccccc
Q psy1434 265 IYHGSPI-GARENPSQIITAEEVN 287 (357)
Q Consensus 265 ~~~~~~~-~~~~~~~q~i~~~~~~ 287 (357)
+|.+... .....++|+|......
T Consensus 536 i~~g~~~~g~~~~~~q~l~~~~~~ 559 (1095)
T 3k6s_A 536 LFHGVLGPSISPSHSQRIAGSQLS 559 (1095)
T ss_dssp EEEBCSSSCBCSSCSBCCBTTSSC
T ss_pred EecCCCCCCccccceEEeecCCCC
Confidence 9999865 5555566777766544
No 12
>3fcs_A Integrin, alpha 2B; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens}
Probab=99.95 E-value=5.3e-28 Score=259.63 Aligned_cols=221 Identities=29% Similarity=0.471 Sum_probs=163.8
Q ss_pred CCcceeeEE--EEeecCCCeEEEeecCCCCeeeEEEEEEcCC---------------ceee---eccCCccccccceEEE
Q psy1434 30 GSYMGYSVA--SGFFSGESGVAVGIPRGARLLGKVALYTTNM---------------TNLQ---NITGEQLGAYFAYAVT 89 (357)
Q Consensus 30 ~sy~G~sva--~gd~~g~~~~vvGaP~~~~~~G~V~i~~~~~---------------~~~~---~~~g~~~~s~fG~sva 89 (357)
+..+|||-+ ++.|..+..+++|||+++.|.|.|+.+.... ...+ ....+..++|||++|+
T Consensus 161 ~~~~g~~Q~GfSa~~t~d~~~~lGApGa~~W~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sy~G~sva 240 (959)
T 3fcs_A 161 SWDKRYCEAGFSSVVTQAGELVLGAPGGYYFLGLLAQAPVADIFSSYRPGILLWHVSSQSLSFDSSNPEYFDGYWGYSVA 240 (959)
T ss_dssp TTCCTTCCBTSEEEECTTCEEEEEETTHHHHTCEEEEEEHHHHHHHCCTTCCSCCCTTCEECCCCCCGGGTTCCTTSEEE
T ss_pred ccccccccCCcceEEcCCCCEEEeCCcccCCCcEEEEeecccccccccccccccccCccccccccCCcccCCCccccEEE
Confidence 344667654 5566644458999999989999998764210 0001 1122456899999999
Q ss_pred EEEeCCCCCc-eEEEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCCcCCCcceeEEeeccCCCCCCcee
Q psy1434 90 TSDVDGDGAD-DLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDF 168 (357)
Q Consensus 90 ~~D~ngDG~~-DlvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~~~~~fG~sva~~gDiN~DG~~Dl 168 (357)
++|+|+||.. |+++|||++.. ..|+||||. ..|.....+.|.+.+++||++++ +||+|+||+.||
T Consensus 241 ~gD~~gDG~~d~~vvGaPr~~~--------~~G~V~i~~-----~~~~~~~~l~G~q~gs~fG~sva-~gD~NgDG~~DL 306 (959)
T 3fcs_A 241 VGEFDGDLNTTEYVVGAPTWSW--------TLGAVEILD-----SYYQRLHRLRGEQMASYFGHSVA-VTDVNGDGRHDL 306 (959)
T ss_dssp EECCSSCSSSCEEEEEETTHHH--------HTCEEEEEC-----TTCCEEEEEECSSTTSCTTSEEE-EECCSSSSSCEE
T ss_pred EEEECCCCCeeEEEEECCcccC--------CcceEEEEC-----CCceEEEEeccccCCCCceeEEE-EEEecCCCccce
Confidence 9999999987 78999998742 369999963 24666677889999999999999 589999999999
Q ss_pred EEcCCCCCC-------CCccEEEEEeCCCC-CCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCCcEEEeec
Q psy1434 169 AVGAPYDGP-------NERGVVYIYHGSPI-GARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAY 240 (357)
Q Consensus 169 ~VgaP~~~~-------~~~G~Vyiy~g~~~-g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl~VGa~ 240 (357)
+||||++.. .+.|+||||.+... +.+....+.+.+.. ...+||.+++..+|+|+||++||+||||
T Consensus 307 vVGAP~~~~~~~~~~~~~~G~VyV~~~~~g~~~~~~~~~~l~G~~-------~~~~FG~sva~~gD~ngDG~~Dl~Vgap 379 (959)
T 3fcs_A 307 LVGAPLYMESRADRKLAEVGRVYLFLQPRGPHALGAPSLLLTGTQ-------LYGRFGSAIAPLGDLDRDGYNDIAVAAP 379 (959)
T ss_dssp EEEETTCEEEETTEEEEECBEEEEECCCSTTCCCCSCSEEEECCS-------TTCCBTSEEEEEECSSCSSSCEEEEEET
T ss_pred eEeccccccccccccccCCceEEEEecCCCCCcccccceEEeccc-------CCCCCceeEEeeecCCCCCCcceEEecc
Confidence 999997531 25799999998643 23333445565442 3579999999778999999999999997
Q ss_pred CCCcEEEEccCCCCCCCCCCCeEEEEEcccccccCCCceeeecc
Q psy1434 241 ESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAE 284 (357)
Q Consensus 241 ~~~~v~~~rsrpv~~~~~~~G~v~~~~~~~~~~~~~~~q~i~~~ 284 (357)
. ++.+..|+||+|.++..+....++|.|...
T Consensus 380 ~-------------~~~~~~G~Vyvy~g~~~g~~~~~~q~~~~~ 410 (959)
T 3fcs_A 380 Y-------------GGPSGRGQVLVFLGQSEGLRSRPSQVLDSP 410 (959)
T ss_dssp T-------------CSTTSSCEEEEECEETTEECSSCSEEEECC
T ss_pred c-------------CCCCCCceEEEEecCCCCcccccceeeccC
Confidence 3 234567888888887766665666777643
No 13
>2bwr_A Psathyrella velutina lectin; N-acetyl-glucosamine; HET: MES; 1.5A {Psathyrella velutina} PDB: 2bwm_A* 2c25_A* 2c4d_A*
Probab=99.42 E-value=2.2e-12 Score=126.46 Aligned_cols=213 Identities=13% Similarity=0.044 Sum_probs=121.3
Q ss_pred cceEEEEecCCCCceEEeecCCCC--CCC--CcceeeEEEEeec--CCCeEEEeecCCCCeeeEEEEEEcCCcee----e
Q psy1434 4 SGQVISQNLYDRPEFKATKEGPPT--DDG--SYMGYSVASGFFS--GESGVAVGIPRGARLLGKVALYTTNMTNL----Q 73 (357)
Q Consensus 4 ~g~~~~~~~~~~~~~~~~~~~~~~--~~~--sy~G~sva~gd~~--g~~~~vvGaP~~~~~~G~V~i~~~~~~~~----~ 73 (357)
.+.+++|..++...|......... ... .....+++.+|++ |..||++.. .+.+.+|.++.... .
T Consensus 136 ~~~~~~~~n~g~g~f~~~~~~~~~~~~~~gw~~~~~~~~~~D~dgDG~~Dl~~~~------~~~~~~~~n~g~g~f~~~~ 209 (401)
T 2bwr_A 136 DGGIYISRNNGGGQFAPAQLALNNFGYAQGWRLDRHLRFLADVTGDGLLDVVGFG------ENQVYIARNSGNGTFQPAQ 209 (401)
T ss_dssp SSSEEEECBCSTTCBCCCEEEESCSSGGGTCCTTTCEEEEECSSSSSCCEEEEEC------SSCEEEECBCSSSCBCCCE
T ss_pred CCCEEEEEeCCCCccccccccccCccccCccccCCcceEEEEcCCCCCccEEEEC------CCcEEEEEeCCCCceecce
Confidence 456777766554444332211000 000 1235678899999 788988632 25678887543211 1
Q ss_pred ecc-CCccc----cccceEEEEEEeCCCCCceEEEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecC-CCc-
Q psy1434 74 NIT-GEQLG----AYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDG-KNS- 146 (357)
Q Consensus 74 ~~~-g~~~~----s~fG~sva~~D~ngDG~~DlvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g-~~~- 146 (357)
.+. ....+ ...+..++++|+|+||+.||++.. .+.+++|.+.+. +.|.....+.. ...
T Consensus 210 ~~~~~~~~~~~g~~~~~~~~~~~D~dgDG~~Dlv~~~--------------~~~~~~~~n~g~-g~f~~~~~~~~~~~~~ 274 (401)
T 2bwr_A 210 AVVNNFCIGAGGWTISAHPRVVADLTGDRKADILGFG--------------VAGVYTSLNNGN-GTFGAVNLVLKDFGVN 274 (401)
T ss_dssp EEESCSBTTBSCCCTTTCCEEEECSSSSSCCEEEEEC--------------SSSEEEECBCSS-SCBCCCEEEESCSSGG
T ss_pred eeccccccCcCCcccCCcceeeeEcCCCCCccEEEEC--------------CCcEEEEEeCCC-ccccCceecccCcccC
Confidence 111 11011 112566889999999999999743 134788888766 45654332211 100
Q ss_pred CC--CcceeEEeeccCCCCCCceeEEcCCCCCCCCccEEEEEeCCCCCCCCCCceEEecceeccccCCCccccceeeecc
Q psy1434 147 KA--RFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGG 224 (357)
Q Consensus 147 ~~--~fG~sva~~gDiN~DG~~Dl~VgaP~~~~~~~G~Vyiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~ 224 (357)
.+ .....++ ++|+|+||..||++.. .+.+++|.+.+.+.+.............. ....+..+++.
T Consensus 275 ~gw~~~~~~~~-~~D~dgDG~~Dlv~~~-------~~~~~~~~n~g~g~f~~~~~~~~~~~~~~----g~~~~~~~~~~- 341 (401)
T 2bwr_A 275 SGWRVEKHVRC-VSSLTNKKVGDIIGFG-------DAGVYVALNNGNGTFGPVKRVIDNFGYNQ----GWRVDKHPRFV- 341 (401)
T ss_dssp GTCCTTTCEEE-EECCSTTCSCEEEEEC-------SSSEEEECBCSSSCBCCCEEEESCSSGGG----TCCTTTCCEEE-
T ss_pred CcccccCccce-eEeCCCCCCccEEEEc-------CCeEEEEecCCCccccCcceeccccccCC----Ccccccceeee-
Confidence 01 1223444 6799999999999842 35799999988776544332221101110 11222344443
Q ss_pred ccCCCCCCCcEEEeecCCCcEEEEccCC
Q psy1434 225 VDLDENQYPDLVIGAYESNTAFVLRSTA 252 (357)
Q Consensus 225 ~D~d~DG~~Dl~VGa~~~~~v~~~rsrp 252 (357)
.|+|+||.+||++.. .+.+.+|+.+.
T Consensus 342 ~D~dgDG~~Dlv~~~--~~~~~~~~n~g 367 (401)
T 2bwr_A 342 VDLTGDGCADIVGFG--ENSVWACMNKG 367 (401)
T ss_dssp ECSSSSSSCEEEEEC--SSCEEEEEECS
T ss_pred EccCCCCCccEEEEC--CCcEEEEEeCC
Confidence 599999999999854 67888887653
No 14
>2bwr_A Psathyrella velutina lectin; N-acetyl-glucosamine; HET: MES; 1.5A {Psathyrella velutina} PDB: 2bwm_A* 2c25_A* 2c4d_A*
Probab=99.39 E-value=7.7e-12 Score=122.56 Aligned_cols=182 Identities=12% Similarity=0.026 Sum_probs=108.8
Q ss_pred eeEEEEeec--CCCeEEEeecCCCCeeeEEEEEEcCCcee----eeccCC-ccc---cccceEEEEEEeCCCCCceEEEe
Q psy1434 35 YSVASGFFS--GESGVAVGIPRGARLLGKVALYTTNMTNL----QNITGE-QLG---AYFAYAVTTSDVDGDGADDLIIG 104 (357)
Q Consensus 35 ~sva~gd~~--g~~~~vvGaP~~~~~~G~V~i~~~~~~~~----~~~~g~-~~~---s~fG~sva~~D~ngDG~~DlvvG 104 (357)
.+++.+|++ |..||+.- ..+.+.+|.++.... ...... ... .....+++++|+|+||+.||++.
T Consensus 116 ~~~~~~D~dgDG~~Dl~~~------~~~~~~~~~n~g~g~f~~~~~~~~~~~~~~gw~~~~~~~~~~D~dgDG~~Dl~~~ 189 (401)
T 2bwr_A 116 HIRFMADLRKTGRADIVGF------GDGGIYISRNNGGGQFAPAQLALNNFGYAQGWRLDRHLRFLADVTGDGLLDVVGF 189 (401)
T ss_dssp CEEEEECCSSSSSCEEEEE------CSSSEEEECBCSTTCBCCCEEEESCSSGGGTCCTTTCEEEEECSSSSSCCEEEEE
T ss_pred ceeEeecCCCCCCcCEEEE------CCCCEEEEEeCCCCccccccccccCccccCccccCCcceEEEEcCCCCCccEEEE
Confidence 478899999 78898842 134577887643211 111110 001 12457789999999999999974
Q ss_pred ccCcCCCCCCCCCccccEEEEEEeCCCccceEEeeeec-CC----CcCCCcceeEEeeccCCCCCCceeEEcCCCCCCCC
Q psy1434 105 APLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRD-GK----NSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNE 179 (357)
Q Consensus 105 aP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~-g~----~~~~~fG~sva~~gDiN~DG~~Dl~VgaP~~~~~~ 179 (357)
. .+.+++|.+.+. +.|.....+. .. ......+..++ ++|+|+||..||++..
T Consensus 190 ~--------------~~~~~~~~n~g~-g~f~~~~~~~~~~~~~~~g~~~~~~~~~-~~D~dgDG~~Dlv~~~------- 246 (401)
T 2bwr_A 190 G--------------ENQVYIARNSGN-GTFQPAQAVVNNFCIGAGGWTISAHPRV-VADLTGDRKADILGFG------- 246 (401)
T ss_dssp C--------------SSCEEEECBCSS-SCBCCCEEEESCSBTTBSCCCTTTCCEE-EECSSSSSCCEEEEEC-------
T ss_pred C--------------CCcEEEEEeCCC-CceecceeeccccccCcCCcccCCccee-eeEcCCCCCccEEEEC-------
Confidence 2 246889988765 4565433221 11 11111233444 6799999999999743
Q ss_pred ccEEEEEeCCCCCCCCCCceEEecceeccccCCCccccceeeeccccCCCCCCCcEEEeecCCCcEEEEccCC
Q psy1434 180 RGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTA 252 (357)
Q Consensus 180 ~G~Vyiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~DG~~Dl~VGa~~~~~v~~~rsrp 252 (357)
.+.+++|.+.+.+.+..+. .+... .. ..........++. ..|+|+||.+||++.. .+.+.+|+...
T Consensus 247 ~~~~~~~~n~g~g~f~~~~-~~~~~-~~--~~~gw~~~~~~~~-~~D~dgDG~~Dlv~~~--~~~~~~~~n~g 312 (401)
T 2bwr_A 247 VAGVYTSLNNGNGTFGAVN-LVLKD-FG--VNSGWRVEKHVRC-VSSLTNKKVGDIIGFG--DAGVYVALNNG 312 (401)
T ss_dssp SSSEEEECBCSSSCBCCCE-EEESC-SS--GGGTCCTTTCEEE-EECCSTTCSCEEEEEC--SSSEEEECBCS
T ss_pred CCcEEEEEeCCCccccCce-ecccC-cc--cCCcccccCccce-eEeCCCCCCccEEEEc--CCeEEEEecCC
Confidence 2458999988776554332 22211 10 0001111233343 4699999999999953 57788887653
No 15
>4a7k_A Aldos-2-ulose dehydratase; lyase, dehydratase/isomerase, lignin degradation, cortalcerone/microthecin forming, metalloenzyme; 2.00A {Phanerochaete chrysosporium} PDB: 4a7y_A* 4a7z_A*
Probab=99.30 E-value=9.6e-11 Score=121.02 Aligned_cols=214 Identities=14% Similarity=0.200 Sum_probs=130.8
Q ss_pred cceEEEEecCCCCc--eEEeecCCCCCCCCcceeeEEEEeec--CCCeEEEeecC----CCCeeeEEEEEEcCCc-----
Q psy1434 4 SGQVISQNLYDRPE--FKATKEGPPTDDGSYMGYSVASGFFS--GESGVAVGIPR----GARLLGKVALYTTNMT----- 70 (357)
Q Consensus 4 ~g~~~~~~~~~~~~--~~~~~~~~~~~~~sy~G~sva~gd~~--g~~~~vvGaP~----~~~~~G~V~i~~~~~~----- 70 (357)
.|.++.|.+.+... |....-.. .-.-.++.++|++ |..+||++... .....+++++|.....
T Consensus 127 gG~V~W~ENpGd~t~~Wk~h~Is~-----~pgvHrv~agDLDGDGrlDLIvAsl~g~KeGws~p~kL~~fe~P~Dp~~~~ 201 (900)
T 4a7k_A 127 GGRVSWLENPGELRDNWTMRTIGH-----SPGMHRLKAGHFTRTDRVQVVAVPIVVASSDLTTPADVIIFTAPDDPRSEQ 201 (900)
T ss_dssp CCEEEEECCCSSSCSSCCEEEEEE-----CTTEEEEEEECSSCSSSCEEEEEESCSSTTCCSSCEEEEEEECCSCTTSSC
T ss_pred CcEEEEEecCCCCCCCceEEEecC-----CCceEEEEEEEECCCCCEEEEEEeccccCcCcCCCceEEEEECCCCccccc
Confidence 56677787655432 21111111 1112468889998 78888876531 1234567888874321
Q ss_pred eee--eccCCccccccceEEE-EEEeCCC-CCceEEEeccCcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCC-
Q psy1434 71 NLQ--NITGEQLGAYFAYAVT-TSDVDGD-GADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKN- 145 (357)
Q Consensus 71 ~~~--~~~g~~~~s~fG~sva-~~D~ngD-G~~DlvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~- 145 (357)
.|. .+. .+ .-..|+.++ ++|+|+| |.+||++++ ..|..++++ .++ .|.......|..
T Consensus 202 eWk~~VIs-d~-~~~HGl~v~~aGDINGD~G~dDILVAS-------------kEGV~wf~~-~dG--~Wk~~~Ig~G~as 263 (900)
T 4a7k_A 202 LWQRDVVG-TR-HLVHEVAIVPAAETDGEMRFDQIILAG-------------RDGVDCLWY-DGA--RWQRHLVGTGLPE 263 (900)
T ss_dssp SCEEEEEE-EE-SSCCEEEEECGGGGTTSCSSCEEEEEE-------------TTEEEEEEE-CSS--CEEEEEEECCBCC
T ss_pred CceEEEec-CC-CcceeeEEeccccccCCCCCceEEEEc-------------CCCcEEEEe-CCC--CcEEEEccCCCcc
Confidence 221 222 12 233455544 6799999 999999986 245454444 333 576655434421
Q ss_pred --cCCCcceeEEeeccCCCCCCceeEEcCCCCCCCCccEEEEEeCCCCCCC----CCCce-EEecceecccc-CCCcccc
Q psy1434 146 --SKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGAR----ENPSQ-IITAEEVNFGL-QGSLTTF 217 (357)
Q Consensus 146 --~~~~fG~sva~~gDiN~DG~~Dl~VgaP~~~~~~~G~Vyiy~g~~~g~~----~~~~q-~i~~~~~~~g~-~~~~~~F 217 (357)
....-|.+-+.+||||+||+.+|++..|+. .+.|.||.+...+.. ..+.+ +|... |. .+....|
T Consensus 264 ~~~~d~~GagDIavGDLdGDG~deIaTIEPfH----Gd~VaVYt~~~ggp~g~~~~~WkrhVId~~----g~~~e~~~~f 335 (900)
T 4a7k_A 264 ERGDPYWGAGSAAVGRVGDDYAGYICSAEAFH----GNTVSVYTKPAGSPTGIVRAEWTRHVLDVF----GPLNGKHTGS 335 (900)
T ss_dssp CTTCCCCBCSEEEEEEETTEEEEEEEEEESTT----CSEEEEEECCTTCCSSSTTSCCEEEEEEEC----CCCCTTSCCS
T ss_pred ccccCCCCccceEEEEcCCCCceeEEEecCCc----CCEEEEEECCCCCccccccccceeeeeccc----CcccccccCC
Confidence 112235554557899999999999998875 368999999876521 12333 23221 11 1235679
Q ss_pred ceeeeccccCCCCCCCcEEEeecCCCc-------EEEEc
Q psy1434 218 GFSLAGGVDLDENQYPDLVIGAYESNT-------AFVLR 249 (357)
Q Consensus 218 G~si~~~~D~d~DG~~Dl~VGa~~~~~-------v~~~r 249 (357)
|.+|+.+ |||+||++||++|....+. +++|+
T Consensus 336 gHaL~~g-DldGDG~~DIVvG~R~~~~~D~~~~gL~~Y~ 373 (900)
T 4a7k_A 336 IHQVVCA-DIDGDGEDEFLVAMMGADPPDFQRTGVWCYK 373 (900)
T ss_dssp EEEEEEE-CTTSSSBCEEEEEEECCSSCCGGGEEEEEEE
T ss_pred ceeEEEE-ecCCCCcccEEEEecCCCCccCCcceEEEEE
Confidence 9999875 9999999999999987763 77766
No 16
>4a7k_A Aldos-2-ulose dehydratase; lyase, dehydratase/isomerase, lignin degradation, cortalcerone/microthecin forming, metalloenzyme; 2.00A {Phanerochaete chrysosporium} PDB: 4a7y_A* 4a7z_A*
Probab=99.18 E-value=3.2e-10 Score=117.19 Aligned_cols=189 Identities=12% Similarity=0.061 Sum_probs=111.6
Q ss_pred CcceeeEEEEee--c--CCCeEEEeecCCC-C-----eeeEEEEEEcCCce-e--eeccCCccccccceEEEEEEeCCCC
Q psy1434 31 SYMGYSVASGFF--S--GESGVAVGIPRGA-R-----LLGKVALYTTNMTN-L--QNITGEQLGAYFAYAVTTSDVDGDG 97 (357)
Q Consensus 31 sy~G~sva~gd~--~--g~~~~vvGaP~~~-~-----~~G~V~i~~~~~~~-~--~~~~g~~~~s~fG~sva~~D~ngDG 97 (357)
...+|+|.++|+ + |..||++.+-+.. . ..+.|++|+++... + +.+. ......++.++|||+||
T Consensus 31 ~~~~~sV~aaDL~~DGDG~lDVLv~g~~s~d~~~d~~~~~~V~WYeN~G~gtFs~~vI~----~~~~pvsV~aaDLDGDG 106 (900)
T 4a7k_A 31 RPDGYWVEAFPFRSDSSKCPNIIGYGLGTYDMKSDIQMLVNPYATTNNQSSSWTPVPLA----KLDFPVAMHYADITKNG 106 (900)
T ss_dssp CSCBCEEEEECSBTTCCSSCEEEEECCCCSSCCEEEEEEECTTSSTTCCCCCCEEEEEE----EESSCCCEEEECTTCSS
T ss_pred CCCcceEEEeccCcCCCCCccEEeeccccccccccccccceEEEEECCCCCCCcceEec----cCCCceeeEEEeeCCCC
Confidence 345789999999 7 8889885433221 1 23467778764332 1 1221 11123678899999999
Q ss_pred CceEEEeccCcCCCCCCCCCccccEEEEEEeCCCc-cceEEeeeecCCCcCCCcceeEEeeccCCCCCCceeEEcCCCCC
Q psy1434 98 ADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKET-YKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDG 176 (357)
Q Consensus 98 ~~DlvvGaP~~~~~~~~~~~~~~G~Vyv~~~~~~~-~~~~~~~~~~g~~~~~~fG~sva~~gDiN~DG~~Dl~VgaP~~~ 176 (357)
..||++++...... .+.....|+|++|.+.+.. ..|....+.. ..+..-..++|+|+||..|||++..+..
T Consensus 107 dlDVVvas~fg~t~--dd~n~~gG~V~W~ENpGd~t~~Wk~h~Is~------~pgvHrv~agDLDGDGrlDLIvAsl~g~ 178 (900)
T 4a7k_A 107 FNDVIITDQYGSSM--DDIWAYGGRVSWLENPGELRDNWTMRTIGH------SPGMHRLKAGHFTRTDRVQVVAVPIVVA 178 (900)
T ss_dssp BCEEEEEECCEEET--TEECTTCCEEEEECCCSSSCSSCCEEEEEE------CTTEEEEEEECSSCSSSCEEEEEESCSS
T ss_pred CccEEEecccCccc--cccccCCcEEEEEecCCCCCCCceEEEecC------CCceEEEEEEEECCCCCEEEEEEecccc
Confidence 99999987532110 0001136899999987652 2454433211 1122223367999999999999764321
Q ss_pred ---CCCccEEEEEeCCCCCC-CCCCc-eEEecceeccccCCCccccceeeeccccCCCC-CCCcEEEeec
Q psy1434 177 ---PNERGVVYIYHGSPIGA-RENPS-QIITAEEVNFGLQGSLTTFGFSLAGGVDLDEN-QYPDLVIGAY 240 (357)
Q Consensus 177 ---~~~~G~Vyiy~g~~~g~-~~~~~-q~i~~~~~~~g~~~~~~~FG~si~~~~D~d~D-G~~Dl~VGa~ 240 (357)
....+.+|+|....... ...+. ..|.. .....|......+|+|+| |+.||++++-
T Consensus 179 KeGws~p~kL~~fe~P~Dp~~~~eWk~~VIsd---------~~~~HGl~v~~aGDINGD~G~dDILVASk 239 (900)
T 4a7k_A 179 SSDLTTPADVIIFTAPDDPRSEQLWQRDVVGT---------RHLVHEVAIVPAAETDGEMRFDQIILAGR 239 (900)
T ss_dssp TTCCSSCEEEEEEECCSCTTSSCSCEEEEEEE---------ESSCCEEEEECGGGGTTSCSSCEEEEEET
T ss_pred CcCcCCCceEEEEECCCCcccccCceEEEecC---------CCcceeeEEeccccccCCCCCceEEEEcC
Confidence 12456788887644321 11122 22221 123445555545799999 9999999984
No 17
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=97.96 E-value=0.00015 Score=72.98 Aligned_cols=190 Identities=17% Similarity=0.237 Sum_probs=95.8
Q ss_pred eEEEEeec--CCCeEEEee-cC---CCC---ee--eEEEEEEcCCceeeecc-CCc--cccccceEEEEEEeCCCCCceE
Q psy1434 36 SVASGFFS--GESGVAVGI-PR---GAR---LL--GKVALYTTNMTNLQNIT-GEQ--LGAYFAYAVTTSDVDGDGADDL 101 (357)
Q Consensus 36 sva~gd~~--g~~~~vvGa-P~---~~~---~~--G~V~i~~~~~~~~~~~~-g~~--~~s~fG~sva~~D~ngDG~~Dl 101 (357)
.+++||++ |..++|+-. |. ... .+ ..+..|+.+++.++.+. +.. .+..+ .++.+.|||+||+.+|
T Consensus 116 d~sVgDLDGDG~~EiVv~~dp~n~~d~s~~g~tg~~~l~aY~ldG~~LW~idlg~ni~aGa~y-t~~~V~DlDGDGkaEI 194 (591)
T 2zux_A 116 DASVGDVDGDGQYELILKWDPSNSKDNSQDGYTGDVLIDAYKLDGTKLWRINLGKNIRAGAHY-TQFMVYDLDGDGKAEV 194 (591)
T ss_dssp EEEEECSSSSSSCEEEEEEEETTCCCTTCCSCCCCCEEEEECTTSCEEEEEECCTTSCCSTTS-CCCEEECSSSSSSCEE
T ss_pred CCeEEecCCCCCEEEEEEECCcccccccccCcCCCcEEEEEECCCCEEEEEcCCCCccccccc-CceeEEEcCCCCcceE
Confidence 36789998 777877754 32 111 12 25667777666554332 222 22222 3678899999999999
Q ss_pred EEeccCcC-CCCC------------CCCCcccc--EEEEEEeCCCccceEEeeee--cCC------CcCCCcceeEEeec
Q psy1434 102 IIGAPLYT-NPTN------------NVGHYETG--RIYVVYQGKETYKFRRLHTR--DGK------NSKARFGLSLCNLG 158 (357)
Q Consensus 102 vvGaP~~~-~~~~------------~~~~~~~G--~Vyv~~~~~~~~~~~~~~~~--~g~------~~~~~fG~sva~~g 158 (357)
++.+-... +... ..+.-..| -++||.+..+ ..+...... .|. ..+.|...-++.++
T Consensus 195 vv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG-~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~va 273 (591)
T 2zux_A 195 AMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTG-KELVTANFEPARGNVSDWGDSYGNRVDRFLAGIA 273 (591)
T ss_dssp EEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTC-CEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEE
T ss_pred EEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCC-CEEecccCCCCCCcccccccccccccccceeeEE
Confidence 88752211 0000 00000011 3556654333 223222211 111 11122222245567
Q ss_pred cCCCCCCceeEEcCCCCCCCCccEEEEEeCCCCCCCCCCceEEecceeccccCCCccccc---eeeeccccCCCCCCCcE
Q psy1434 159 DINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFG---FSLAGGVDLDENQYPDL 235 (357)
Q Consensus 159 DiN~DG~~Dl~VgaP~~~~~~~G~Vyiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~FG---~si~~~~D~d~DG~~Dl 235 (357)
+||++ .+.++++--++ ....|..|...... ..++........+ .....| .+++. .|+|+||..+|
T Consensus 274 yLDG~-~Ps~v~~rGyY---tr~~v~A~d~~~~~----L~~~W~~d~~~~~---~~~~~gqg~h~~~v-aDVDgDG~dEI 341 (591)
T 2zux_A 274 YLDGQ-RPSLIMTRGYY---AKTMLVAYNFRDGK----LSKLWTLDSSKSG---NEAFAGQGNHNLSI-ADVDGDGKDEI 341 (591)
T ss_dssp CTTSS-SCEEEEEECCS---SSCEEEEEEEETTE----EEEEEEEETTSTT---CGGGSSCCCSCCEE-ECCSSSSSCEE
T ss_pred ECCCC-CceEEEecccc---ceeEEEEEECCCCc----eEEEEEecCCCCC---cccccccCCCCCee-EeCCCCCCceE
Confidence 99999 89898875444 23566666643221 1222221111101 011222 34444 59999999999
Q ss_pred EEee
Q psy1434 236 VIGA 239 (357)
Q Consensus 236 ~VGa 239 (357)
++|+
T Consensus 342 v~Gs 345 (591)
T 2zux_A 342 IFGS 345 (591)
T ss_dssp EETT
T ss_pred EEee
Confidence 9997
No 18
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=97.94 E-value=0.00019 Score=72.45 Aligned_cols=192 Identities=19% Similarity=0.235 Sum_probs=93.6
Q ss_pred eEEEEeec--CCCeEEEee-cC---CCCe---ee--EEEEEEcCCceeeecc-CC--ccccccceEEEEEEeCCCCCceE
Q psy1434 36 SVASGFFS--GESGVAVGI-PR---GARL---LG--KVALYTTNMTNLQNIT-GE--QLGAYFAYAVTTSDVDGDGADDL 101 (357)
Q Consensus 36 sva~gd~~--g~~~~vvGa-P~---~~~~---~G--~V~i~~~~~~~~~~~~-g~--~~~s~fG~sva~~D~ngDG~~Dl 101 (357)
.+++||++ |..++|+-. |. ...+ +| .+..|+..++.++.+. +. ..+..+ .++.+.|||+||+.+|
T Consensus 120 d~sVgDLDGDG~~EIVv~~d~~n~~d~s~~g~tg~~~l~aY~ldG~~LW~idlg~Ni~aGahy-t~~~V~DlDGDGkaEI 198 (620)
T 2zuy_A 120 DASVGDIDGDGEYEMILKWDPSNSKDNAHDGYTGEVLIDAYKLDGTFLWRINLGRNIRAGAHY-TQFMVYDLDGDGKAEI 198 (620)
T ss_dssp EEEEECSSSSSSCEEEEEEEETTCCCTTSCCCCCCCEEEEECTTSCEEEEEECCTTSCCSTTS-CCCEEECSSSSSSCEE
T ss_pred CCeEEecCCCCCeEEEEEECCCccccccccccCCCcEEEEEECCCCEEEEEcCCCCccccccc-CceeEEEcCCCCcceE
Confidence 36789999 677777654 21 1112 23 5567777666544332 22 222222 3678999999999999
Q ss_pred EEec-cCcCCCC------------CCCCCccccE--EEEEEeCCCccceEEeeeec--CC------CcCCCcceeEEeec
Q psy1434 102 IIGA-PLYTNPT------------NNVGHYETGR--IYVVYQGKETYKFRRLHTRD--GK------NSKARFGLSLCNLG 158 (357)
Q Consensus 102 vvGa-P~~~~~~------------~~~~~~~~G~--Vyv~~~~~~~~~~~~~~~~~--g~------~~~~~fG~sva~~g 158 (357)
++.+ +...+.. ...+.-..|. ++||.+..+ ..+....... +. ..+.|...-++.++
T Consensus 199 vv~TadGt~dg~g~vigd~~~dyr~~~g~il~G~eyL~vfdG~TG-~~l~t~~~~p~rg~~~~WGD~yGnR~drf~~~va 277 (620)
T 2zuy_A 199 AMKTADGTTDGKGHIIGDEQADFRNEQGRILSGPEYLTVFKGETG-EALTTVEYEPPRGKLEDWGDGYGNRMDRFLAGTA 277 (620)
T ss_dssp EEEECTTCBCTTSCBCSCTTCCCBCTTSCBCSSCCEEEEEETTTC-CEEEEEECSSCCCSGGGGTSSSSTTTTCEEEEEE
T ss_pred EEEccCCcccCcceeecccccccccccceEecCCeEEEEEcCCCc-ceeeecccCCCcCccccccccccccccccceeEE
Confidence 8864 3221000 0001111233 444544322 2222222111 11 11222222245567
Q ss_pred cCCCCCCceeEEcCCCCCCCCccEEEEEeCCCCCCCCCCceEEecceeccccCCCccc-cceeeeccccCCCCCCCcEEE
Q psy1434 159 DINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTT-FGFSLAGGVDLDENQYPDLVI 237 (357)
Q Consensus 159 DiN~DG~~Dl~VgaP~~~~~~~G~Vyiy~g~~~g~~~~~~q~i~~~~~~~g~~~~~~~-FG~si~~~~D~d~DG~~Dl~V 237 (357)
+||++ .+.++++--++ ....|..|.-.... ..++..-.....+.. .+.. -..+++. .|+|+||..+|++
T Consensus 278 yLDG~-~Ps~v~~rG~Y---tr~~v~A~d~~~g~----L~~~W~~ds~~~~~~-~~~gqg~H~~sv-aDVDGDG~dEIv~ 347 (620)
T 2zuy_A 278 YLDGE-RPSLVMARGYY---TRTVLVAYDFRNGR----LKKRWVFDSNQPGHE-AYAGQGNHSLSV-ADVDGDGKDEIIY 347 (620)
T ss_dssp CTTCC--CEEEEEECSS---SSCEEEEEEEETTE----EEEEEEEETTSTTCG-GGTTCCCSSCEE-ECCSSSSSCEEEE
T ss_pred ecCCC-CceEEEecCcc---cceeEEEEEccCCc----eeeeeEecCCCCccc-ccccccCcCceE-EecCCCCceeEEE
Confidence 99999 88888876554 23456555433211 122222111000000 1111 1133443 5999999999999
Q ss_pred ee
Q psy1434 238 GA 239 (357)
Q Consensus 238 Ga 239 (357)
|+
T Consensus 348 Gs 349 (620)
T 2zuy_A 348 GA 349 (620)
T ss_dssp TT
T ss_pred ee
Confidence 97
No 19
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=97.07 E-value=0.0031 Score=63.50 Aligned_cols=87 Identities=22% Similarity=0.260 Sum_probs=48.6
Q ss_pred ccceEEEEEEeCCCCCceEEEec-cCcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCCcCCCcceeEEeeccCC
Q psy1434 83 YFAYAVTTSDVDGDGADDLIIGA-PLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDIN 161 (357)
Q Consensus 83 ~fG~sva~~D~ngDG~~DlvvGa-P~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~~~~~fG~sva~~gDiN 161 (357)
|---.++++||||||..+||+.. |.....+...+......+.+|...++ .-|...... ....+..+. .+. +.|||
T Consensus 112 y~~nd~sVgDLDGDG~~EiVv~~dp~n~~d~s~~g~tg~~~l~aY~ldG~-~LW~idlg~-ni~aGa~yt-~~~-V~DlD 187 (591)
T 2zux_A 112 YSANDASVGDVDGDGQYELILKWDPSNSKDNSQDGYTGDVLIDAYKLDGT-KLWRINLGK-NIRAGAHYT-QFM-VYDLD 187 (591)
T ss_dssp EEEEEEEEECSSSSSSCEEEEEEEETTCCCTTCCSCCCCCEEEEECTTSC-EEEEEECCT-TSCCSTTSC-CCE-EECSS
T ss_pred eecCCCeEEecCCCCCEEEEEEECCcccccccccCcCCCcEEEEEECCCC-EEEEEcCCC-CcccccccC-cee-EEEcC
Confidence 33455789999999999998875 32111111111111246777776654 345322111 112222232 233 45999
Q ss_pred CCCCceeEEcCC
Q psy1434 162 KDGFGDFAVGAP 173 (357)
Q Consensus 162 ~DG~~Dl~VgaP 173 (357)
+||..+|++.+-
T Consensus 188 GDGkaEIvv~Ta 199 (591)
T 2zux_A 188 GDGKAEVAMKTA 199 (591)
T ss_dssp SSSSCEEEEEEC
T ss_pred CCCcceEEEEcc
Confidence 999999988753
No 20
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=96.63 E-value=0.05 Score=55.05 Aligned_cols=86 Identities=20% Similarity=0.261 Sum_probs=47.6
Q ss_pred ccceEEEEEEeCCCCCceEEEecc-CcCCCCCCCCCccccEEEEEEeCCCccceEEeeeecCCCcCCCcceeEEeeccCC
Q psy1434 83 YFAYAVTTSDVDGDGADDLIIGAP-LYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDIN 161 (357)
Q Consensus 83 ~fG~sva~~D~ngDG~~DlvvGaP-~~~~~~~~~~~~~~G~Vyv~~~~~~~~~~~~~~~~~g~~~~~~fG~sva~~gDiN 161 (357)
|---.++++||||||..+||+... .....+...+....-.+.+|...+. .-|...... ....+..+. .+. +.|||
T Consensus 116 y~and~sVgDLDGDG~~EIVv~~d~~n~~d~s~~g~tg~~~l~aY~ldG~-~LW~idlg~-Ni~aGahyt-~~~-V~DlD 191 (620)
T 2zuy_A 116 YSANDASVGDIDGDGEYEMILKWDPSNSKDNAHDGYTGEVLIDAYKLDGT-FLWRINLGR-NIRAGAHYT-QFM-VYDLD 191 (620)
T ss_dssp EEEEEEEEECSSSSSSCEEEEEEEETTCCCTTSCCCCCCCEEEEECTTSC-EEEEEECCT-TSCCSTTSC-CCE-EECSS
T ss_pred eecCCCeEEecCCCCCeEEEEEECCCccccccccccCCCcEEEEEECCCC-EEEEEcCCC-CcccccccC-cee-EEEcC
Confidence 334557799999999999988763 1111111111111235667776654 344422111 112222332 333 45999
Q ss_pred CCCCceeEEcC
Q psy1434 162 KDGFGDFAVGA 172 (357)
Q Consensus 162 ~DG~~Dl~Vga 172 (357)
+||..+|++.+
T Consensus 192 GDGkaEIvv~T 202 (620)
T 2zuy_A 192 GDGKAEIAMKT 202 (620)
T ss_dssp SSSSCEEEEEE
T ss_pred CCCcceEEEEc
Confidence 99999998864
Done!