RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1434
(357 letters)
>3vi3_A Integrin alpha-5; beta propeller fold, rossman fold, beta sandwich,
fibronecti receptor, cell adhesion-immune system
complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB:
3vi4_A*
Length = 632
Score = 226 bits (577), Expect = 7e-69
Identities = 102/339 (30%), Positives = 155/339 (45%), Gaps = 26/339 (7%)
Query: 16 PEFKATKEGPPTDDGSYMGYSVASGFFS--GESGVAVGIPRGARLLGKVALYT-TNMTNL 72
T++ D SY+GYSVA G FS G+P+G G V + +++ +L
Sbjct: 214 QGQLQTRQASSIYDDSYLGYSVAVGEFSGDDTEDFVAGVPKGNLTYGYVTILNGSDIRSL 273
Query: 73 QNITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKET 132
N +GEQ+ +YF YAV +DV+GDG DDL++GAPL + T + E GR+YV Q
Sbjct: 274 YNFSGEQMASYFGYAVAATDVNGDGLDDLLVGAPLLMDRTPDGRPQEVGRVYVYLQHPAG 333
Query: 133 YKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIG 192
+ T G + RFG SL LGD+++DG+ D A+GAP+ G ++GVV+++ G P G
Sbjct: 334 IEPTPTLTLTGHDEFGRFGSSLTPLGDLDQDGYNDVAIGAPFGGETQQGVVFVFPGGPGG 393
Query: 193 ARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTA 252
PSQ++ + + FG +L GG DLD N YPDL++G++ + A V R
Sbjct: 394 LGSKPSQVLQP---LWAASHTPDFFGSALRGGRDLDGNGYPDLIVGSFGVDKAVVYRGRP 450
Query: 253 PYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQ--------------ELNVQIL 298
+ E + L V++
Sbjct: 451 IVSA----SASLTIFPAMFNPEERSCSLEGNPVACINLSFCLNASGKHVADSIGFTVELQ 506
Query: 299 LDSKKPKS--PRMFFLSDEGKNVINQTLLLIKGTQFCKS 335
LD +K K R FL+ + L+ + C+
Sbjct: 507 LDWQKQKGGVRRALFLASRQATLTQTLLIQNGAREDCRE 545
Score = 135 bits (341), Expect = 1e-35
Identities = 67/307 (21%), Positives = 107/307 (34%), Gaps = 57/307 (18%)
Query: 1 MSHSGQVISQNLYDRPEFKATKEGPPTDDGSYMGYSVASGFFSGESGVAVGIPRGARLLG 60
+ + + N E+ + G S F+ V +G P G
Sbjct: 131 PVGTCYLSTDNFTRILEYAPCRSDFSWAAGQGYCQGGFSAEFTKTGRVVLGGPGSYFWQG 190
Query: 61 KVALYTTNMTNLQ-----------------NITGEQLGAYFAYAVTTSDVDGDGADDLII 103
++ T + +Y Y+V + GD +D +
Sbjct: 191 QILSATQEQIAESYYPEYLINLVQGQLQTRQASSIYDDSYLGYSVAVGEFSGDDTEDFVA 250
Query: 104 GAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKD 163
G P G+ G + ++ R L+ G+ + FG ++ D+N D
Sbjct: 251 GVPK--------GNLTYGYVTILNGS----DIRSLYNFSGEQMASYFGYAVA-ATDVNGD 297
Query: 164 GFGDFAVGAPY-------DGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTT 216
G D VGAP P E G VY+Y P G P+ +T +
Sbjct: 298 GLDDLLVGAPLLMDRTPDGRPQEVGRVYVYLQHPAGIEPTPTLTLTGHDEF-------GR 350
Query: 217 FGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGAREN 276
FG SL DLD++ Y D+ IG AP+ G ++GVV+++ G P G
Sbjct: 351 FGSSLTPLGDLDQDGYNDVAIG-------------APFGGETQQGVVFVFPGGPGGLGSK 397
Query: 277 PSQIITA 283
PSQ++
Sbjct: 398 PSQVLQP 404
Score = 56.4 bits (135), Expect = 6e-09
Identities = 52/300 (17%), Positives = 83/300 (27%), Gaps = 52/300 (17%)
Query: 16 PEFKATKEGPPTDDGSYMGYSVASGFF-SGESGVAVGIPRGARLLGKV----ALYTTNMT 70
E A GPP GS+ G+SV + V VG P+ V A+Y
Sbjct: 5 AEAPAVLSGPP---GSFFGFSVEFYRPGTDGVSVLVGAPKANTSQPGVLQGGAVYLCPWG 61
Query: 71 ------NLQNITGEQLGAYFAYAVTTSD---------------VDGDGADDLIIGAPLYT 109
+ + ++ V G ++ APLY+
Sbjct: 62 ASPTQCTPIEFDSKGSRLLESSLSSSEGEEPVEYKSLQWFGATVRAHG-SSILACAPLYS 120
Query: 110 NPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFA 169
T + + T R + A G G
Sbjct: 121 WRTEKEPLSDPVGTCYLSTDNFTRILEYAPCRSDFSWAAGQGYCQGG-FSAEFTKTGRVV 179
Query: 170 VGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTT-----FGFSLAGG 224
+G P +G + I P +I + + + + G+S+A G
Sbjct: 180 LGGPGSY-FWQGQILSATQEQIAESYYPEYLINLVQGQLQTRQASSIYDDSYLGYSVAVG 238
Query: 225 VDLDENQYPDLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAE 284
+ + D V G + N + G V I +GS I + N S A
Sbjct: 239 -EFSGDDTEDFVAGVPKGNLTY--------------GYVTILNGSDIRSLYNFSGEQMAS 283
>3fcs_A Integrin, alpha 2B; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens}
Length = 959
Score = 223 bits (568), Expect = 7e-66
Identities = 102/344 (29%), Positives = 155/344 (45%), Gaps = 22/344 (6%)
Query: 15 RPEFKATKEGPPTDDGSYMGYSVASGFFSGESG---VAVGIPRGARLLGKVALYTTNMTN 71
+ + P Y GYSVA G F G+ VG P + LG V + +
Sbjct: 217 SSQSLSFDSSNPEYFDGYWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILDSYYQR 276
Query: 72 LQNITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKE 131
L + GEQ+ +YF ++V +DV+GDG DL++GAPLY + E GR+Y+ Q +
Sbjct: 277 LHRLRGEQMASYFGHSVAVTDVNGDGRHDLLVGAPLYMESRADRKLAEVGRVYLFLQPRG 336
Query: 132 TYKFRR-LHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSP 190
+ G RFG ++ LGD+++DG+ D AV APY GP+ RG V ++ G
Sbjct: 337 PHALGAPSLLLTGTQLYGRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGRGQVLVFLGQS 396
Query: 191 IGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRS 250
G R PSQ++ + + FGFSL G VD+D+N YPDL++GAY +N V R+
Sbjct: 397 EGLRSRPSQVLD------SPFPTGSAFGFSLRGAVDIDDNGYPDLIVGAYGANQVAVYRA 450
Query: 251 -----------TAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQELNVQILL 299
P + V +P+ + LN ++ L
Sbjct: 451 QPVVKASVQLLVQDSLNPAVKSCVLPQTKTPVSCFNIQMCVGATGHNIPQKLSLNAELQL 510
Query: 300 DSKKPKSPRMFFLSDEGKNVINQTL-LLIKGTQFCKSTVDMVCE 342
D +KP+ R L + L L K + C +T+ + +
Sbjct: 511 DRQKPRQGRRVLLLGSQQAGTTLNLDLGGKHSPICHTTMAFLRD 554
Score = 112 bits (280), Expect = 2e-27
Identities = 69/301 (22%), Positives = 111/301 (36%), Gaps = 60/301 (19%)
Query: 1 MSHSGQVISQNLYDRPEFKATKEGPPTDDGSYMGYSVASGFFSGESGVAVGIPRGARLLG 60
+G S + E G G VA F S G+ +
Sbjct: 166 YCEAG--FSSVVTQAGELVLGAPGGYYFLGLLAQAPVADIFSSYRPGILLW--------- 214
Query: 61 KVALYTTNMTNLQNITGEQLGAYFAYAVTTSDVDGD-GADDLIIGAPLYTNPTNNVGHYE 119
++ + + E Y+ Y+V + DGD + ++GAP ++ V +
Sbjct: 215 ---HVSSQSLSFDSSNPEYFDGYWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILD 271
Query: 120 TGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYD---- 175
+ ++RLH G+ + FG S+ + D+N DG D VGAP
Sbjct: 272 S-------------YYQRLHRLRGEQMASYFGHSVA-VTDVNGDGRHDLLVGAPLYMESR 317
Query: 176 ---GPNERGVVYIYHGSPIG-ARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQ 231
E G VY++ A PS ++T ++ FG ++A DLD +
Sbjct: 318 ADRKLAEVGRVYLFLQPRGPHALGAPSLLLTGTQLYGR-------FGSAIAPLGDLDRDG 370
Query: 232 YPDLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEV---NF 288
Y D+ + APY GP+ RG V ++ G G R PSQ++ + F
Sbjct: 371 YNDIAVA-------------APYGGPSGRGQVLVFLGQSEGLRSRPSQVLDSPFPTGSAF 417
Query: 289 G 289
G
Sbjct: 418 G 418
Score = 41.1 bits (95), Expect = 5e-04
Identities = 37/261 (14%), Positives = 68/261 (26%), Gaps = 37/261 (14%)
Query: 16 PEFKATKEGPPTDDGSYMGYSVASGF-FSGESGVAVGIPRGARLLGKV--ALY----TTN 68
P GP GS G+S+ G + VG PR + ++
Sbjct: 5 PVQLTFYAGPN---GSQFGFSLDFHKDSHGRVAIVVGAPRTLGPSQEETGGVFLCPWRAE 61
Query: 69 MTNLQNITGEQLGAYFAYAVTTSDVDGDGA----------DDLIIGAPLYT----NPTNN 114
++ + T D ++ AP T
Sbjct: 62 GGQCPSLLFDLRDETRNVGSQTLQTFKARQGLGASVVSWSDVIVACAPWQHWNVLEKTEE 121
Query: 115 VGHYETGRIYVVYQGKETYK-----FRRLHTRDGKNSKARFGLSLCNLG-DINKDGFGDF 168
G ++ +R + + C G G+
Sbjct: 122 AEKTPVGSCFLAQPESGRRAEYSPCRGNTLSRIYVENDFSWDKRYCEAGFSSVVTQAGEL 181
Query: 169 AVGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLT------TFGFSLA 222
+GAP G G++ + I + P ++ S +G+S+A
Sbjct: 182 VLGAPG-GYYFLGLLAQAPVADIFSSYRPGILLWHVSSQSLSFDSSNPEYFDGYWGYSVA 240
Query: 223 GGVDLDENQYPDLVIGAYESN 243
G + + V+GA +
Sbjct: 241 VGEFDGDLNTTEYVVGAPTWS 261
Score = 39.6 bits (91), Expect = 0.001
Identities = 23/208 (11%), Positives = 57/208 (27%), Gaps = 23/208 (11%)
Query: 81 GAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIY-------------VVY 127
G+ F +++ D G +++GAP P+ ETG ++ +++
Sbjct: 16 GSQFGFSLDF-HKDSHGRVAIVVGAPRTLGPSQE----ETGGVFLCPWRAEGGQCPSLLF 70
Query: 128 QGKETYKFRRLHTRDGKNSKARFGLSLCNLGD----INKDGFGDFAVGAPYDGPNERGVV 183
++ + T ++ G S+ + D + G
Sbjct: 71 DLRDETRNVGSQTLQTFKARQGLGASVVSWSDVIVACAPWQHWNVLEKTEEAEKTPVGSC 130
Query: 184 YIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAG-GVDLDENQYPDLVIGAYES 242
++ E + + AG + + L
Sbjct: 131 FLAQPESGRRAEYSPCRGNTLSRIYVENDFSWDKRYCEAGFSSVVTQAGELVLGAPGGYY 190
Query: 243 NTAFVLRSTAPYDGPNERGVVYIYHGSP 270
+ ++ + R + ++H S
Sbjct: 191 FLGLLAQAPVADIFSSYRPGILLWHVSS 218
>3ije_A Integrin alpha-V; integrin structure, activation, EGF domains,
FLIM, cell SIGN cell adhesion, cleavage on PAIR of basic
residues; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB:
1jv2_A* 1l5g_A* 1m1x_A* 1u8c_A*
Length = 967
Score = 222 bits (567), Expect = 1e-65
Identities = 107/361 (29%), Positives = 167/361 (46%), Gaps = 25/361 (6%)
Query: 16 PEFKATKEGPPTDDGSYMGYSVASGFFS--GESGVAVGIPRGARLLGKVALYT-TNMTNL 72
AT+ D SY+GYSVA G F+ G G+PR AR LG V +Y NM++L
Sbjct: 205 NNQLATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYDGKNMSSL 264
Query: 73 QNITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKET 132
N TGEQ+ AYF ++V +D++GD D+ IGAPL+ + ++ E G++ V Q
Sbjct: 265 YNFTGEQMAAYFGFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQRASG 324
Query: 133 YKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIG 192
+ +G ARFG ++ LGD+++DGF D A+ APY G +++G+VYI++G G
Sbjct: 325 --DFQTTKLNGFEVFARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTG 382
Query: 193 ARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTA 252
PSQI+ + + +FG+S+ G D+D+N YPDL++GA+ + A + R+
Sbjct: 383 LNAVPSQILEG---QWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVDRAILYRARP 439
Query: 253 PY-------------DGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQELNVQILL 299
+ N+ + + V V++LL
Sbjct: 440 VITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPRKLNFQVELLL 499
Query: 300 DSKKPKSP--RMFFLSDEGKNVINQTLLLIKGTQFCKSTVDMV--CEAERPLCTPITPAV 355
D K K R FL + + G C+ + + R TPIT +
Sbjct: 500 DKLKQKGAIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFM 559
Query: 356 S 356
Sbjct: 560 E 560
Score = 56.5 bits (135), Expect = 7e-09
Identities = 50/302 (16%), Positives = 85/302 (28%), Gaps = 57/302 (18%)
Query: 16 PEFKATKEGPPTDDGSYMGYSVASGFFSGESG--VAVGIPRGARLLGKV----ALY---- 65
+ A GP GSY G++V S S + VG P+ + +
Sbjct: 5 VDSPAEYSGPE---GSYFGFAVDFFVPSASSRMFLLVGAPKANTTQPGIVEGGQVLKCDW 61
Query: 66 ----------TTNMTNLQNITGEQL----GAYFAYAVTTSDVDGDGADDLIIGAPLYTNP 111
N + L +F +V + D ++ APLY
Sbjct: 62 SSTRRCQPIEFDATGNRDYAKDDPLEFKSHQWFGASVRSKQ------DKILACAPLYHWR 115
Query: 112 TNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVG 171
T E + G +T ++ ++D G I+ +G
Sbjct: 116 TEMKQEREPVGTCFLQDGTKTVEYAPCRSQD--IDADGQGFCQGG-FSIDFTKADRVLLG 172
Query: 172 APYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTT----FGFSLAGGVDL 227
P + ++ + + I G+S+A G D
Sbjct: 173 GPGSFYWQGQLISDQVAEIVSKYDPNVYSIKYNNQLATRTAQAIFDDSYLGYSVAVG-DF 231
Query: 228 DENQYPDLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVN 287
+ + D V G + G+VYIY G + + N + A
Sbjct: 232 NGDGIDDFVSGVPRAARTL--------------GMVYIYDGKNMSSLYNFTGEQMAA--Y 275
Query: 288 FG 289
FG
Sbjct: 276 FG 277
>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A*
Length = 597
Score = 209 bits (533), Expect = 8e-63
Identities = 96/370 (25%), Positives = 162/370 (43%), Gaps = 30/370 (8%)
Query: 1 MSHSGQVISQNLYDRPEFKATKEGPPTDDGSYMGYSVASGFFSGESG--VAVGIPRGARL 58
+G + N+ + GSY+GYSV +G F + V G P+ ++
Sbjct: 186 SYWTGSLFVYNITTNKYKAFLDKQNQVKFGSYLGYSVGAGHFRSQHTTEVVGGAPQHEQI 245
Query: 59 LGKVALYT---TNMTNLQNITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNV 115
GK +++ + L + G++LG+YF +V D++ DG DL++GAP+ +
Sbjct: 246 -GKAYIFSIDEKELNILHEMKGKKLGSYFGASVCAVDLNADGFSDLLVGAPMQSTIR--- 301
Query: 116 GHYETGRIYVVYQGKE--TYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAP 173
E GR++V + ARFG S+ NLGDI+ DGF D A+GAP
Sbjct: 302 ---EEGRVFVYINSGSGAVMNAMETNLVGSDKYAARFGESIVNLGDIDNDGFEDVAIGAP 358
Query: 174 YDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYP 233
+ +G +YIY+G G SQ I +++ L FG S++G +D D N Y
Sbjct: 359 QEDDL-QGAIYIYNGRADGISSTFSQRIEGLQISKSLSM----FGQSISGQIDADNNGYV 413
Query: 234 DLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAE-EVNFGLQ- 291
D+ +GA+ S++A +LR+ + + EN + + + F +
Sbjct: 414 DVAVGAFRSDSAVLLRTRPVVIVDASLSHPESVNRTKFDCVENGWPSVCIDLTLCFSYKG 473
Query: 292 -------ELNVQILLDS--KKPKSPRMFFLSDEGKNVINQTLLLIKGTQFCKSTVDMVCE 342
L + LD K PR +F S+ +VI ++ + C++ + +
Sbjct: 474 KEVPGYIVLFYNMSLDVNRKAESPPRFYFSSNGTSDVITGSIQVSSREANCRTHQAFMRK 533
Query: 343 AERPLCTPIT 352
R + TPI
Sbjct: 534 DVRDILTPIQ 543
Score = 58.7 bits (141), Expect = 1e-09
Identities = 44/298 (14%), Positives = 73/298 (24%), Gaps = 52/298 (17%)
Query: 16 PEFKATKEGPPTDDGSYMGYSVASGFFSGESGVAVGIPRGARLLGK-----VALYTTNMT 70
E +GP + GYSV + VG P L A+Y +
Sbjct: 5 TESALLYQGPH---NTLFGYSVVLHSHGANRWLLVGAPTANWLANASVINPGAIYRCRIG 61
Query: 71 NLQNITGEQLGAYFAYAVTTS----------------DVDGDGADDLIIGAPLYTNP--T 112
T EQL ++ + N
Sbjct: 62 KNPGQTCEQLQLGSPNGEPCGKTCLEERDNQWLGVTLSRQPGENGSIVTCGHRWKNIFYI 121
Query: 113 NNVGHYETGRIYVVYQGKETYKFRRLHT-RDGKNSKARFGLSLCNLGDINKDGFGDFAVG 171
N TG Y V T +R+ K + C G + +G
Sbjct: 122 KNENKLPTGGCYGVPPDLRTELSKRIAPCYQDYVKKFGENFASCQAGISSFYTKDLIVMG 181
Query: 172 APYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQ 231
AP G +++Y+ + + + + ++ G+S+ G
Sbjct: 182 APGS-SYWTGSLFVYNITTNKYKAFLDKQNQVKFGSY--------LGYSVGAG-HFRSQH 231
Query: 232 YPDLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFG 289
++V GA + G YI+ FG
Sbjct: 232 TTEVVGGAPQHEQI---------------GKAYIFSIDEKELNILHEMKGKKLGSYFG 274
>3t3p_A Integrin alpha-IIB; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3fcu_A* 3nif_A* 3nid_A* 3t3m_A* 3nig_A*
2vdr_A* 2vc2_A* 2vdk_A* 2vdm_A* 2vdn_A* 2vdl_A* 2vdp_A*
2vdq_A* 2vdo_A* 1txv_A* 1ty3_A* 1ty5_A* 1ty6_A* 1ty7_A*
1tye_A*
Length = 457
Score = 198 bits (505), Expect = 5e-60
Identities = 86/240 (35%), Positives = 125/240 (52%), Gaps = 10/240 (4%)
Query: 15 RPEFKATKEGPPTDDGSYMGYSVASGFFSGESG---VAVGIPRGARLLGKVALYTTNMTN 71
+ + P Y GYSVA G F G+ VG P + LG V + +
Sbjct: 217 SSQSLSFDSSNPEYFDGYWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILDSYYQR 276
Query: 72 LQNITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKE 131
L + GEQ+ +YF ++V +DV+GDG DL++GAPLY + E GR+Y+ Q +
Sbjct: 277 LHRLRGEQMASYFGHSVAVTDVNGDGRHDLLVGAPLYMESRADRKLAEVGRVYLFLQPRG 336
Query: 132 TYKFRR-LHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSP 190
+ G RFG ++ LGD+++DG+ D AV APY GP+ RG V ++ G
Sbjct: 337 PHALGAPSLLLTGTQLYGRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGRGQVLVFLGQS 396
Query: 191 IGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRS 250
G R PSQ++ + + FGFSL G VD+D+N YPDL++GAY +N V R+
Sbjct: 397 EGLRSRPSQVLD------SPFPTGSAFGFSLRGAVDIDDNGYPDLIVGAYGANQVAVYRA 450
Score = 98.8 bits (245), Expect = 4e-23
Identities = 60/267 (22%), Positives = 102/267 (38%), Gaps = 43/267 (16%)
Query: 27 TDDGSYMGYSVASGFFSGESGVAVGIPRGARLLGKVALYTTN--MTNLQNITGEQLGAYF 84
T G + + +F G A + + L+ + + + E Y+
Sbjct: 176 TQAGELVLGAPGGYYFLGLLAQAPVADIFSSYRPGILLWHVSSQSLSFDSSNPEYFDGYW 235
Query: 85 AYAVTTSDVDGDG-ADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDG 143
Y+V + DGD + ++GAP ++ V ++ ++RLH G
Sbjct: 236 GYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILDSY-------------YQRLHRLRG 282
Query: 144 KNSKARFGLSLCNLGDINKDGFGDFAVGAPYD-------GPNERGVVYIYHGSPIGAREN 196
+ + FG S+ + D+N DG D VGAP E G VY++
Sbjct: 283 EQMASYFGHSVA-VTDVNGDGRHDLLVGAPLYMESRADRKLAEVGRVYLFLQPRGPHALG 341
Query: 197 PSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDG 256
++ +G FG ++A DLD + Y D+ + A PY G
Sbjct: 342 APSLLLTGTQLYGR------FGSAIAPLGDLDRDGYNDIAVAA-------------PYGG 382
Query: 257 PNERGVVYIYHGSPIGARENPSQIITA 283
P+ RG V ++ G G R PSQ++ +
Sbjct: 383 PSGRGQVLVFLGQSEGLRSRPSQVLDS 409
Score = 33.7 bits (76), Expect = 0.091
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 81 GAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIY 124
G+ F +++ D G +++GAP P ETG ++
Sbjct: 16 GSQFGFSLD-FHKDSHGRVAIVVGAPRTLGP----SQEETGGVF 54
Score = 30.6 bits (68), Expect = 0.80
Identities = 38/261 (14%), Positives = 69/261 (26%), Gaps = 37/261 (14%)
Query: 16 PEFKATKEGPPTDDGSYMGYSVASGFFS-GESGVAVGIPRGARLLGKV--ALY----TTN 68
P GP GS G+S+ S G + VG PR + ++
Sbjct: 5 PVQLTFYAGPN---GSQFGFSLDFHKDSHGRVAIVVGAPRTLGPSQEETGGVFLCPWRAE 61
Query: 69 MTNLQNITGEQLGAYFAYAVTTSDVDGDGA----------DDLIIGAPLY----TNPTNN 114
++ + T D ++ AP T
Sbjct: 62 GGQCPSLLFDLRDETRNVGSQTLQTFKARQGLGASVVSWSDVIVACAPWQHWNVLEKTEE 121
Query: 115 VGHYETGRIYVVYQGKETYK-----FRRLHTRDGKNSKARFGLSLCNLG-DINKDGFGDF 168
G ++ +R + + C G G+
Sbjct: 122 AEKTPVGSCFLAQPESGRRAEYSPCRGNTLSRIYVENDFSWDKRYCEAGFSSVVTQAGEL 181
Query: 169 AVGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLT------TFGFSLA 222
+GAP G G++ + I + P ++ S +G+S+A
Sbjct: 182 VLGAPG-GYYFLGLLAQAPVADIFSSYRPGILLWHVSSQSLSFDSSNPEYFDGYWGYSVA 240
Query: 223 GGVDLDENQYPDLVIGAYESN 243
G + + V+GA +
Sbjct: 241 VGEFDGDLNTTEYVVGAPTWS 261
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_A* 3k72_A*
Length = 1095
Score = 195 bits (495), Expect = 1e-55
Identities = 94/380 (24%), Positives = 144/380 (37%), Gaps = 49/380 (12%)
Query: 1 MSHSGQVISQNLYDRPEFKATKEGPPTDDGSYMGYSVASGFFSGESGVAVGIPRGARLLG 60
+ SG P F + SY+GYS + G + +G PR G
Sbjct: 354 FTWSGGAFLYPPNMSPTFINMSQENVDMRDSYLGYSTELALWKGVQSLVLGAPRYQHT-G 412
Query: 61 KVALYT---TNMTNLQNITGEQLGAYFAYAVTTSDVDGDGADDLI-IGAPLYTNPTNNVG 116
K ++T +TG Q+G+YF ++ + DVD DG+ DL+ IGAP Y
Sbjct: 413 KAVIFTQVSRQWRMKAEVTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAPHYYE------ 466
Query: 117 HYETGRIYVVYQGKETYKFRRLHTRDGKNSK--ARFGLSLCNLGDINKDGFGDFAVGAPY 174
G++ V + ++ G+ RFG +L LGD+N D D +GAP
Sbjct: 467 QTRGGQVSVCPLPRGWRRWWCDAVLYGEQGHPWGRFGAALTVLGDVNGDKLTDVVIGAPG 526
Query: 175 DGPNERGVVYIYHGSP-IGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYP 233
RG VY++HG + SQ I +++ LQ FG +L+GG DL ++
Sbjct: 527 -EEENRGAVYLFHGVLGPSISPSHSQRIAGSQLSSRLQ----YFGQALSGGQDLTQDGLV 581
Query: 234 DLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPS--------------- 278
DL +GA +LR+ P V + R
Sbjct: 582 DLAVGA--RGQVLLLRTR-----PVLWVGVSMQFIPAEIPRSAFECREQVVSEQTLVQSN 634
Query: 279 ---QIITAEEVNFGLQELNVQILLDS---KKPKSPRMFFLSDEGKNVINQTLLLIKGTQF 332
I + G ++L + LD SPR F E KN + ++
Sbjct: 635 ICLYIDKRSKNLLGSRDLQSSVTLDLALDPGRLSPRATF--QETKNRSLSRVRVLGLKAH 692
Query: 333 CKSTVDMVCEAERPLCTPIT 352
C++ ++ TPIT
Sbjct: 693 CENFNLLLPSCVEDSVTPIT 712
>4a7k_A Aldos-2-ulose dehydratase; lyase, dehydratase/isomerase, lignin
degradation, cortalcerone/microthecin forming,
metalloenzyme; 2.00A {Phanerochaete chrysosporium} PDB:
4a7y_A* 4a7z_A*
Length = 900
Score = 45.4 bits (106), Expect = 2e-05
Identities = 18/173 (10%), Positives = 44/173 (25%), Gaps = 21/173 (12%)
Query: 82 AYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTR 141
F A+ +D+ +G +D+II + + GR+ + E + T
Sbjct: 91 LDFPVAMHYADITKNGFNDVIITDQY--GSSMDDIWAYGGRVSWLENPGELRDNWTMRTI 148
Query: 142 DGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERG-----VVYIYHGSPIGAREN 196
R G + ++ +++ P +
Sbjct: 149 GHSPGMHRL-----KAGHFTRTDRVQVVAVPIVVASSDLTTPADVIIFTAPDDPRSEQLW 203
Query: 197 PSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLR 249
++ + ++ + D D +I A +
Sbjct: 204 QRDVVGTRHL---------VHEVAIVPAAETDGEMRFDQIILAGRDGVDCLWY 247
Score = 43.1 bits (100), Expect = 1e-04
Identities = 35/248 (14%), Positives = 70/248 (28%), Gaps = 38/248 (15%)
Query: 28 DDGSYMGYSVASGFFSGESGVAVGIPRGARLLGKVALYTTNMTNLQNITGEQLGAYFAYA 87
D A F V + + + + G+ G +
Sbjct: 281 GDDYAGYICSAEAFHGNTVSVYTKPAGSPTGIVRAEWTRHVLDVFGPLNGKHTG--SIHQ 338
Query: 88 VTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSK 147
V +D+DGDG D+ ++ P TG + KF + +
Sbjct: 339 VVCADIDGDGEDEFLVAMMGADPPDFQ----RTGVWCYKLVDRTNMKFSKTKVSSVSAGR 394
Query: 148 ARFGLSLCNLGDINKDGF------GDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQII 201
+ + G ++V ++ PN V++ G + R +
Sbjct: 395 IA-------TANFHSQGSEVDIATISYSVPGYFESPNPSINVFLSTG-ILAERLD----- 441
Query: 202 TAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDGPNERG 261
EEV + + +T + +D+ + +V+ A D
Sbjct: 442 --EEVMLRVVRAGSTRFKTEMEFLDVAGKKLTLVVLP-----------PFARLDVERNVS 488
Query: 262 VVYIYHGS 269
V + G+
Sbjct: 489 GVKVMAGT 496
>2bwr_A Psathyrella velutina lectin; N-acetyl-glucosamine; HET: MES; 1.5A
{Psathyrella velutina} PDB: 2bwm_A* 2c25_A* 2c4d_A*
Length = 401
Score = 44.9 bits (106), Expect = 2e-05
Identities = 27/170 (15%), Positives = 47/170 (27%), Gaps = 29/170 (17%)
Query: 84 FAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVY-QGKETYKFRRL-HTR 141
+ +D+ G D++ G IY+ G + +L
Sbjct: 114 EKHIRFMADLRKTGRADIVGFG--------------DGGIYISRNNGGGQFAPAQLALNN 159
Query: 142 DGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQII 201
G R L L D+ DG D VYI S G + ++
Sbjct: 160 FGYAQGWRLDRHLRFLADVTGDGLLDVVG-------FGENQVYIARNSGNGTFQPAQAVV 212
Query: 202 TAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRST 251
NF + T DL ++ D++ + + +
Sbjct: 213 N----NFCIGAGGWTISAHPRVVADLTGDRKADIL--GFGVAGVYTSLNN 256
Score = 43.0 bits (101), Expect = 9e-05
Identities = 29/171 (16%), Positives = 50/171 (29%), Gaps = 28/171 (16%)
Query: 82 AYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRL-HT 140
A+ +D+ GD D++ G + G T+ L
Sbjct: 223 TISAHPRVVADLTGDRKADILGFGV-------------AGVYTSLNNGNGTFGAVNLVLK 269
Query: 141 RDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQI 200
G NS R + + + GD +G G VY+ + G ++
Sbjct: 270 DFGVNSGWRVEKHVRCVSSLTNKKVGDI-IGFGDAG------VYVALNNGNGTFGPVKRV 322
Query: 201 ITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRST 251
I NFG DL + D+V + N+ + +
Sbjct: 323 ID----NFGYNQGWRVDKHPRFVV-DLTGDGCADIV--GFGENSVWACMNK 366
Score = 39.1 bits (91), Expect = 0.002
Identities = 21/160 (13%), Positives = 43/160 (26%), Gaps = 26/160 (16%)
Query: 92 DVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFG 151
G DL+ + G +Y++ + ++ R
Sbjct: 12 PTRIPGVADLVG--------------FGNGGVYIIRNSLLIQVVKVINNFGYDAGGWRVE 57
Query: 152 LSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQ 211
+ L D D D V+I + +P +++ A NF
Sbjct: 58 KHVRLLADTTGDNQSDVVGFGE-------NGVWISTNNGNNTFVDPPKMVLA---NFAYA 107
Query: 212 GSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRST 251
+ DL + D+V + ++ R+
Sbjct: 108 AGGWRVEKHIRFMADLRKTGRADIV--GFGDGGIYISRNN 145
Score = 35.3 bits (81), Expect = 0.024
Identities = 25/171 (14%), Positives = 47/171 (27%), Gaps = 28/171 (16%)
Query: 84 FAYAVTTSDVDGDGADDLII--GAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTR 141
+ +D GD D++ ++ + N + V+ F
Sbjct: 57 EKHVRLLADTTGDNQSDVVGFGENGVWISTNNGNNTFVDPPKMVLAN------FAYAAGG 110
Query: 142 DGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQII 201
RF + D+ K G D G +YI + G +
Sbjct: 111 WRVEKHIRF------MADLRKTGRADIVGFGD-------GGIYISRNNGGGQFAPAQLAL 157
Query: 202 TAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTA 252
NFG D+ + D+V + N ++ R++
Sbjct: 158 N----NFGYAQGWRLDRHLRFLA-DVTGDGLLDVV--GFGENQVYIARNSG 201
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM;
1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Length = 591
Score = 41.2 bits (96), Expect = 4e-04
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Query: 83 YFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRD 142
Y A + DVDGDG +LI L +P+N+ + + G V +L +
Sbjct: 112 YSANDASVGDVDGDGQYELI----LKWDPSNSKDNSQDGYTGDVLIDAYKLDGTKLWRIN 167
Query: 143 -GKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVV 183
GKN +A + + D++ DG + A+ + G V
Sbjct: 168 LGKNIRAGAHYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKV 209
Score = 32.4 bits (73), Expect = 0.24
Identities = 21/126 (16%), Positives = 43/126 (34%), Gaps = 12/126 (9%)
Query: 4 SGQVISQNLYDRPEFKATKEGPPTDDGSYMGYSVASGFFSGESGVAVGIPRGARLLGKVA 63
+G+ + ++ + G + + + G+ + + RG +
Sbjct: 238 TGKELVTANFEPARGNVSDWGDSYGNRVD-RFLAGIAYLDGQRPSLI-MTRGYYAKTMLV 295
Query: 64 LYTTNMTNLQ--------NITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNV 115
Y L E + ++ +DVDGDG D++I G+ + +
Sbjct: 296 AYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGSMAVDH--DGK 353
Query: 116 GHYETG 121
G Y TG
Sbjct: 354 GMYSTG 359
Score = 27.7 bits (61), Expect = 7.8
Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 6/93 (6%)
Query: 92 DVDGDGADDLIIGAPLY--TNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDGKNSKAR 149
D G+ D + G P+ + + +V K +L T D S
Sbjct: 259 DSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNE 318
Query: 150 FGLSLCN----LGDINKDGFGDFAVGAPYDGPN 178
N + D++ DG + G+ +
Sbjct: 319 AFAGQGNHNLSIADVDGDGKDEIIFGSMAVDHD 351
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Length = 620
Score = 37.8 bits (87), Expect = 0.005
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
Query: 83 YFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRD 142
Y A + D+DGDG ++I+ + N Y + Y+ T+ +R
Sbjct: 116 YSANDASVGDIDGDGEYEMILKWDPSNSKDNAHDGYTGEVLIDAYKLDGTFLWR---INL 172
Query: 143 GKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVY 184
G+N +A + + D++ DG + A+ + +G +
Sbjct: 173 GRNIRAGAHYTQFMVYDLDGDGKAEIAMKTADGTTDGKGHII 214
Score = 33.9 bits (77), Expect = 0.082
Identities = 39/226 (17%), Positives = 74/226 (32%), Gaps = 34/226 (15%)
Query: 4 SGQVISQNLYDRPEFKATKEGPPTDDGSYMGYSVASGFFSGESGVAVGIPRGARLLGKVA 63
+G+ ++ Y+ P K G + + + + GE V + RG +
Sbjct: 242 TGEALTTVEYEPPRGKLEDWGDGYGNRMDR-FLAGTAYLDGERPSLV-MARGYYTRTVLV 299
Query: 64 LYTTNMTNLQ--------NITGEQLGAYFAYAVTTSDVDGDGADDLIIGA--------PL 107
Y L+ E ++++ +DVDGDG D++I GA L
Sbjct: 300 AYDFRNGRLKKRWVFDSNQPGHEAYAGQGNHSLSVADVDGDGKDEIIYGAMAVDHDGTGL 359
Query: 108 YTNPTNNVGHYETGRIYVVYQGKETYKFRRLHT-------RDGKNSKARFGLSL------ 154
Y+ + G + +G E ++ T RD + +G+
Sbjct: 360 YSTGLGHGDAMHVGDLDPSRKGLEVFQVHEDATKPYGLSLRDAGTGEILWGVHAGTDVGR 419
Query: 155 CNLGDINKD--GFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPS 198
I+ G + + P + G ++ G I + S
Sbjct: 420 GMAAHIDPSYKGSLVWGIDPPGNDGMSYG-LFTSKGEKISDKAPSS 464
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.053
Identities = 14/79 (17%), Positives = 24/79 (30%), Gaps = 20/79 (25%)
Query: 194 RENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAP 253
NP + T F G + EN Y ++ +E+ L++
Sbjct: 1666 INNPVNL---------------TIHFGGEKGKRIREN-YSAMI---FETIVDGKLKTEKI 1706
Query: 254 YDGPNERGVVYIYHGSPIG 272
+ NE Y + G
Sbjct: 1707 FKEINEHSTSYTFRS-EKG 1724
>2gr8_A Adhesin; trimeric autotransporter, adhesion, protein secretion,
microbial pathogenesis, membrane protein; 2.00A
{Haemophilus influenzae} SCOP: d.24.1.4
Length = 99
Score = 27.1 bits (60), Expect = 3.7
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 26 PTDDGSYMGYSVASGFFSGESGVAVGIPR 54
T G M ++A + G++G+A+G+ R
Sbjct: 41 ATMPGKSM-VAIAGSSYQGQNGLAIGVSR 68
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta
barrel protein, PSI, protei structure initiative; 2.70A
{Pseudomonas aeruginosa} SCOP: b.82.1.11
Length = 278
Score = 27.7 bits (61), Expect = 5.3
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 170 VGAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLT 215
+ P G E YI +P G + P Q AE V F ++G L+
Sbjct: 57 IARPLSGFAETFSQYIVELAPNGGSDKPEQDPNAEAVLFVVEGELS 102
>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle
structural genomics center for infectious DI
transferase; 2.35A {Burkholderia xenovorans}
Length = 333
Score = 27.9 bits (63), Expect = 6.1
Identities = 6/42 (14%), Positives = 14/42 (33%), Gaps = 7/42 (16%)
Query: 94 DGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKF 135
DG ++ L + +G ++ G+ +K
Sbjct: 197 DGSHSNILCTPGNVNGGVV-------SGSAFLHMDGQAVFKL 231
>3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis}
PDB: 3il5_A* 3il4_A*
Length = 321
Score = 27.5 bits (62), Expect = 6.4
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 94 DGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKF 135
DG L G + +P + + +G+ + F
Sbjct: 183 DGQRWTALTSGYTINESPFYQGHKQASK--TLQMEGRSIFDF 222
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 26.5 bits (58), Expect = 8.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 205 EVNFGLQGSLTTFGFSLAGGVDLDENQYP 233
E++ QG GFS+ GG+D D +Q P
Sbjct: 28 EIHKLRQGENLILGFSIGGGIDQDPSQNP 56
>2b2a_A Telomerase reverse transcriptase; TERT, RT, transferase; 2.22A
{Tetrahymena thermophila}
Length = 199
Score = 26.6 bits (58), Expect = 9.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 59 LGKVALYTTNMTNLQNITGEQLGAYF 84
L + LY++N NL NI GE+ YF
Sbjct: 134 LSRQTLYSSNFRNLLNIFGEEDFKYF 159
>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide,
biosynthetic engineering, catalytic triad, transferase;
HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2
c.95.1.2
Length = 339
Score = 27.1 bits (61), Expect = 10.0
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 94 DGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKF 135
DG G L + + + GR +V GK +++
Sbjct: 191 DGTGLGSLHMSSSWDQYVEDP----SVGRPALVMDGKRVFRW 228
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.137 0.402
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,524,751
Number of extensions: 348039
Number of successful extensions: 980
Number of sequences better than 10.0: 1
Number of HSP's gapped: 869
Number of HSP's successfully gapped: 54
Length of query: 357
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 262
Effective length of database: 4,049,298
Effective search space: 1060916076
Effective search space used: 1060916076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 58 (26.0 bits)