RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1434
(357 letters)
>d1tyea_ b.69.8.1 (A:) Integrin alpha N-terminal domain {Human (Homo
sapiens), isoform IIb [TaxId: 9606]}
Length = 452
Score = 171 bits (434), Expect = 5e-50
Identities = 86/253 (33%), Positives = 128/253 (50%), Gaps = 10/253 (3%)
Query: 2 SHSGQVISQNLYDRPEFKATKEGPPTDDGSYMGYSVASGFFSGESG---VAVGIPRGARL 58
S + + + + P Y GYSVA G F G+ VG P +
Sbjct: 204 FSSYRPGILLWHVSSQSLSFDSSNPEYFDGYWGYSVAVGEFDGDLNTTEYVVGAPTWSWT 263
Query: 59 LGKVALYTTNMTNLQNITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHY 118
LG V + + L + EQ+ +YF ++V +DV+GDG DL++GAPLY +
Sbjct: 264 LGAVEILDSYYQRLHRLRAEQMASYFGHSVAVTDVNGDGRHDLLVGAPLYMESRADRKLA 323
Query: 119 ETGRIYVVYQGKETYKF-RRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGP 177
E GR+Y+ Q + + G RFG ++ LGD+++DG+ D AV APY GP
Sbjct: 324 EVGRVYLFLQPRGPHALGAPSLLLTGTQLYGRFGSAIAPLGDLDRDGYNDIAVAAPYGGP 383
Query: 178 NERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVI 237
+ RG V ++ G G R PSQ++ + + + FGFSL G VD+D+N YPDL++
Sbjct: 384 SGRGQVLVFLGQSEGLRSRPSQVLDSPF------PTGSAFGFSLRGAVDIDDNGYPDLIV 437
Query: 238 GAYESNTAFVLRS 250
GAY +N V R+
Sbjct: 438 GAYGANQVAVYRA 450
Score = 78.1 bits (191), Expect = 2e-16
Identities = 59/262 (22%), Positives = 100/262 (38%), Gaps = 33/262 (12%)
Query: 27 TDDGSYMGYSVASGFFSGESGVAVGIPRGARLLGKVALYTTNMTNLQN--ITGEQLGAYF 84
T G + + +F G A + + L+ + +L E Y+
Sbjct: 176 TQAGELVLGAPGGYYFLGLLAQAPVADIFSSYRPGILLWHVSSQSLSFDSSNPEYFDGYW 235
Query: 85 AYAVTTSDVDGDG-ADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKFRRLHTRDG 143
Y+V + DGD + ++GAP + + G + ++ ++RLH
Sbjct: 236 GYSVAVGEFDGDLNTTEYVVGAPTW--------SWTLGAVEILD-----SYYQRLHRLRA 282
Query: 144 KNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIGARENPSQIITA 203
+ + FG S+ + D+N DG D VGAP + G + P
Sbjct: 283 EQMASYFGHSVA-VTDVNGDGRHDLLVGAPLYMESRADRKLAEVGR-VYLFLQPRGPHAL 340
Query: 204 EEVNFGLQGSLTT--FGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDGPNERG 261
+ L G+ FG ++A DLD + Y D+ + A PY GP+ RG
Sbjct: 341 GAPSLLLTGTQLYGRFGSAIAPLGDLDRDGYNDIAVAA-------------PYGGPSGRG 387
Query: 262 VVYIYHGSPIGARENPSQIITA 283
V ++ G G R PSQ++ +
Sbjct: 388 QVLVFLGQSEGLRSRPSQVLDS 409
Score = 40.3 bits (93), Expect = 2e-04
Identities = 37/289 (12%), Positives = 72/289 (24%), Gaps = 55/289 (19%)
Query: 16 PEFKATKEGPPTDDGSYMGYSVASGFFS-GESGVAVGIPRGARLLGKV--ALY----TTN 68
P GP GS G+S+ S G + VG PR + ++
Sbjct: 5 PVQLTFYAGPN---GSQFGFSLDFHKDSHGRVAIVVGAPRTLGPSQEETGGVFLCPWRAE 61
Query: 69 MTNLQNITGEQLGAYFAYAVTTSDVDGDG----------ADDLIIGAPLY----TNPTNN 114
++ + T +D ++ AP T
Sbjct: 62 GGQCPSLLFDLRDETRNVGSQTLQTFKARQGLGASVVSWSDVIVACAPWQHWNVLEKTEE 121
Query: 115 VGHYETGRIYVVYQGKETYK-----FRRLHTRDGKNSKARFGLSLCNLG---DINKDGFG 166
G ++ +R + + C G + + G
Sbjct: 122 AEKTPVGSCFLAQPESGRRAEYSPCRGNTLSRIYVENDFSWDKRYCEAGFSSVVTQAGEL 181
Query: 167 DFAVGAPYDGPNERGVVYIYHGSPIGARENPSQII------TAEEVNFGLQGSLTTFGFS 220
Y G++ + I + P ++ + + + +G+S
Sbjct: 182 VLGAPGGYYFL---GLLAQAPVADIFSSYRPGILLWHVSSQSLSFDSSNPEYFDGYWGYS 238
Query: 221 LAGGVDLDENQYPDLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGS 269
+A G + + V+GA + G V I
Sbjct: 239 VAVGEFDGDLNTTEYVVGAPTWS--------------WTLGAVEILDSY 273
Score = 36.5 bits (83), Expect = 0.004
Identities = 26/208 (12%), Positives = 62/208 (29%), Gaps = 23/208 (11%)
Query: 81 GAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIY-------------VVY 127
G+ F +++ D G +++GAP P+ ETG ++ +++
Sbjct: 16 GSQFGFSLDF-HKDSHGRVAIVVGAPRTLGPSQE----ETGGVFLCPWRAEGGQCPSLLF 70
Query: 128 QGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYI-- 185
++ + T ++ G S+ + D+
Sbjct: 71 DLRDETRNVGSQTLQTFKARQGLGASVVSWSDVIVACAPWQHWNVLEKTEEAEKTPVGSC 130
Query: 186 YHGSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAG-GVDLDENQYPDLVIGAYESNT 244
+ P R ++ + ++ G Q +LV+GA
Sbjct: 131 FLAQPESGRRAEYSPCRGNTLSRIYVENDFSWDKRYCEAGFSSVVTQAGELVLGAPGGYY 190
Query: 245 AF--VLRSTAPYDGPNERGVVYIYHGSP 270
+ ++ + R + ++H S
Sbjct: 191 FLGLLAQAPVADIFSSYRPGILLWHVSS 218
>d1jv2a4 b.69.8.1 (A:1-438) Integrin alpha N-terminal domain {Human
(Homo sapiens), isoform V [TaxId: 9606]}
Length = 438
Score = 147 bits (370), Expect = 5e-41
Identities = 89/238 (37%), Positives = 137/238 (57%), Gaps = 8/238 (3%)
Query: 16 PEFKATKEGPPTDDGSYMGYSVASGFFS--GESGVAVGIPRGARLLGKVALYT-TNMTNL 72
AT+ D SY+GYSVA G F+ G G+PR AR LG V +Y NM++L
Sbjct: 205 NNQLATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYDGKNMSSL 264
Query: 73 QNITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKET 132
N TGEQ+ AYF ++V +D++GD D+ IGAPL+ + ++ E G++ V Q
Sbjct: 265 YNFTGEQMAAYFGFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQ--RA 322
Query: 133 YKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYHGSPIG 192
+ +G ARFG ++ LGD+++DGF D A+ APY G +++G+VYI++G G
Sbjct: 323 SGDFQTTKLNGFEVFARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTG 382
Query: 193 ARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFVLRS 250
PSQI+ + + +FG+S+ G D+D+N YPDL++GA+ + A + R+
Sbjct: 383 LNAVPSQILEG---QWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVDRAILYRA 437
Score = 71.6 bits (174), Expect = 2e-14
Identities = 61/283 (21%), Positives = 97/283 (34%), Gaps = 45/283 (15%)
Query: 25 PPTDDGSYMGYSVASGFFSGESGVAVGIPRGARLLGKVALYTT----------------- 67
DG S F+ V +G P G++
Sbjct: 146 DIDADGQGFCQGGFSIDFTKADRVLLGGPGSFYWQGQLISDQVAEIVSKYDPNVYSIKYN 205
Query: 68 NMTNLQNITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVY 127
N + +Y Y+V D +GDG DD + G P G +Y+
Sbjct: 206 NQLATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVPRAARTL--------GMVYIYD 257
Query: 128 QGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDGPNERGVVYIYH 187
+ L+ G+ A FG S+ DIN D + D +GAP
Sbjct: 258 GKNMS----SLYNFTGEQMAAYFGFSVA-ATDINGDDYADVFIGAPLFMDRGSDGKLQEV 312
Query: 188 GSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAYESNTAFV 247
G + + S ++N FG ++A DLD++ + D+ I A
Sbjct: 313 GQVSVSLQRASGDFQTTKLNGF--EVFARFGSAIAPLGDLDQDGFNDIAIAA-------- 362
Query: 248 LRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGL 290
PY G +++G+VYI++G G PSQI+ + +
Sbjct: 363 -----PYGGEDKKGIVYIFNGRSTGLNAVPSQILEGQWAARSM 400
Score = 43.5 bits (101), Expect = 2e-05
Identities = 48/299 (16%), Positives = 93/299 (31%), Gaps = 57/299 (19%)
Query: 21 TKEGPPTDDGSYMGYSVASGFFSGESG--VAVGIPRGARLLGKV----ALYTTNMTN--- 71
GP GSY G++V S S + VG P+ + + + ++
Sbjct: 10 EYSGPE---GSYFGFAVDFFVPSASSRMFLLVGAPKANTTQPGIVEGGQVLKCDWSSTRR 66
Query: 72 ---------------LQNITGEQLGAYFAYAVTTSDVDGDGADDLIIGAPLYTNPTNNVG 116
+ + +F +V + D ++ APLY T
Sbjct: 67 CQPIEFDATGNRDYAKDDPLEFKSHQWFGASVRSKQ------DKILACAPLYHWRTEMKQ 120
Query: 117 HYETGRIYVVYQGKETYKFRRLHTRDGKNSKARFGLSLCNLGDINKDGFGDFAVGAPYDG 176
E + G +T ++ ++D F ++ D G+ Y
Sbjct: 121 EREPVGTCFLQDGTKTVEYAPCRSQDIDADGQGFCQGGFSIDFTKADRVLLGGPGSFYW- 179
Query: 177 PNERGVVYIYHGSPIGARENPSQIITAEEVNFGLQGSL-----TTFGFSLAGGVDLDENQ 231
+G + + I ++ +P+ + + + G+S+A G D + +
Sbjct: 180 ---QGQLISDQVAEIVSKYDPNVYSIKYNNQLATRTAQAIFDDSYLGYSVAVG-DFNGDG 235
Query: 232 YPDLVIGAYESNTAFVLRSTAPYDGPNERGVVYIYHGSPIGARENPSQIITAEEVNFGL 290
D V G + G+VYIY G + + N + A F +
Sbjct: 236 IDDFVSGVPRAA--------------RTLGMVYIYDGKNMSSLYNFTGEQMAAYFGFSV 280
>d1jv2a1 b.1.15.1 (A:439-598) Thigh, calf-1 and calf-2 domains of
integrin alpha {Human (Homo sapiens) [TaxId: 9606]}
Length = 160
Score = 42.7 bits (100), Expect = 1e-05
Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 4/76 (5%)
Query: 281 ITAEEVNFGLQELNVQILLDSKKPKS--PRMFFLSDEGKNVINQTLLLIKGTQFCKS-TV 337
+ V V++LLD K K R FL + + G C+
Sbjct: 43 ADGKGVLPRKLNFQVELLLDKLKQKGAIRRALFLYSRSPSHSKNMTISRGGLMQCEELIA 102
Query: 338 DMVCEAE-RPLCTPIT 352
+ E+E R TPIT
Sbjct: 103 YLRDESEFRDKLTPIT 118
>d1mzja2 c.95.1.2 (A:184-336) Priming beta-ketosynthase from the
r1128 polyketide biosynthetic pathway {Streptomyces sp.
r1128 [TaxId: 140437]}
Length = 153
Score = 32.8 bits (74), Expect = 0.025
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 94 DGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKF-RRLHTRDGKNSKARFGL 152
DG G L + + + GR +V GK +++ + + GL
Sbjct: 8 DGTGLGSLHMSSSWDQYVEDP----SVGRPALVMDGKRVFRWAVADVVPAAREALEVAGL 63
Query: 153 SLCN 156
++ +
Sbjct: 64 TVGD 67
>d1u6ea2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH)
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 148
Score = 27.0 bits (59), Expect = 2.7
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 94 DGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKF 135
DG+ AD + T N G R +V +G +++
Sbjct: 8 DGEQADAIRQDIDWITFAQNPSG----PRPFVRLEGPAVFRW 45
>d2gr8a1 d.24.1.4 (A:1022-1098) Adhesin Hia {Haemophilus
influenzae [TaxId: 727]}
Length = 77
Score = 25.5 bits (56), Expect = 2.8
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 25 PPTDDGSYMGYSVASGFFSGESGVAVGIPR 54
P ++A + G++G+A+G+ R
Sbjct: 17 PQATMPGKSMVAIAGSSYQGQNGLAIGVSR 46
>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase
inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 123
Score = 26.4 bits (58), Expect = 3.1
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 188 GSPIGARENPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQY 232
GS + SQ+ ++ L+ S FGF++ GG + DE
Sbjct: 4 GSSGLFTRDASQL-KGTFLSTTLKKSNMGFGFTIIGGDEPDEFLQ 47
>d1rhsa2 c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [TaxId:
9913]}
Length = 144
Score = 26.0 bits (56), Expect = 4.4
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 273 ARENPSQIITAEEVNFGLQELNVQIL 298
A N S + T E+V L+ Q++
Sbjct: 5 ATLNRSLLKTYEQVLENLESKRFQLV 30
>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId:
9606]}
Length = 103
Score = 25.2 bits (55), Expect = 5.2
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 196 NPSQIITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVIGAY 240
+ + +E+ ++ GFS++GGV N + G +
Sbjct: 3 HMGHELAKQEIRVRVEKD-PELGFSISGGVGGRGNPFRPDDDGIF 46
>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 122
Score = 25.7 bits (56), Expect = 5.4
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 217 FGFSLAGGVDLDENQYPDLVI 237
FG L G V E +I
Sbjct: 29 FGIQLQGSVFATETLSSPPLI 49
>d1ub7a2 c.95.1.2 (A:174-322) Ketoacyl-ACP synthase III (FabH)
{Thermus thermophilus [TaxId: 274]}
Length = 149
Score = 25.5 bits (55), Expect = 7.7
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 94 DGDGADDLIIGAPLYTNPTNNVGHYETGRIYVVYQGKETYKF 135
DG GA +L P G R+Y+ G+E +KF
Sbjct: 8 DGTGAKELYHACVAPRLPD---GTSMKNRLYM--NGREVFKF 44
>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 97
Score = 24.9 bits (54), Expect = 8.0
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 201 ITAEEVNFGLQGSLTTFGFSLAGGVDLDENQYPDLVI 237
I EE+ + G S+AGG + D I
Sbjct: 5 IEEEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGI 41
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.137 0.402
Gapped
Lambda K H
0.267 0.0619 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,308,955
Number of extensions: 61935
Number of successful extensions: 230
Number of sequences better than 10.0: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 21
Length of query: 357
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 271
Effective length of database: 1,226,816
Effective search space: 332467136
Effective search space used: 332467136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 53 (24.4 bits)