BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14342
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 39/92 (42%)
Query: 2 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVL 61
+A+L ++ +T G+ +SH + + + I L P+ G +L
Sbjct: 169 IAFLQYTSGSTXHPKGVXVSHHNLLDNLNKIFTSFHXNDETIIFSWLPPHHDXGLIGCIL 228
Query: 62 SSVYSGHHSILIPPSEVEVNPALWLSAVSQYR 93
+ +Y G +I P NP WL +++Y+
Sbjct: 229 TPIYGGIQAIXXSPFSFLQNPLSWLKHITKYK 260
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 137 LDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYR 182
L P+ G +L+ +Y G +I P NP WL +++Y+
Sbjct: 215 LPPHHDXGLIGCILTPIYGGIQAIXXSPFSFLQNPLSWLKHITKYK 260
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLC 29
+AY++FS TTG I +HA +T LC
Sbjct: 165 QIAYINFSSGTTGRPKAIACTHAGITRLC 193
>pdb|3GOY|A Chain A, Crystal Structure Of Human Poly(Adp-Ribose) Polymerase 14,
Catalytic Fragment In Complex With An Inhibitor
3-Aminobenzamide
pdb|3GOY|B Chain B, Crystal Structure Of Human Poly(Adp-Ribose) Polymerase 14,
Catalytic Fragment In Complex With An Inhibitor
3-Aminobenzamide
pdb|3GOY|C Chain C, Crystal Structure Of Human Poly(Adp-Ribose) Polymerase 14,
Catalytic Fragment In Complex With An Inhibitor
3-Aminobenzamide
pdb|3GOY|D Chain D, Crystal Structure Of Human Poly(Adp-Ribose) Polymerase 14,
Catalytic Fragment In Complex With An Inhibitor
3-Aminobenzamide
pdb|3SE2|A Chain A, Human Poly(Adp-Ribose) Polymerase 14 (Parp14ARTD8) -
Catalytic Domain In Complex With 6(5h)-Phenanthridinone
pdb|3SE2|B Chain B, Human Poly(Adp-Ribose) Polymerase 14 (Parp14ARTD8) -
Catalytic Domain In Complex With 6(5h)-Phenanthridinone
pdb|3SE2|C Chain C, Human Poly(Adp-Ribose) Polymerase 14 (Parp14ARTD8) -
Catalytic Domain In Complex With 6(5h)-Phenanthridinone
pdb|3SE2|D Chain D, Human Poly(Adp-Ribose) Polymerase 14 (Parp14ARTD8) -
Catalytic Domain In Complex With 6(5h)-Phenanthridinone
pdb|3SMI|A Chain A, Human Poly(Adp-Ribose) Polymerase 14 (Parp14ARTD8) -
Catalytic Domain In Complex With A Quinazoline Inhibitor
pdb|3SMI|B Chain B, Human Poly(Adp-Ribose) Polymerase 14 (Parp14ARTD8) -
Catalytic Domain In Complex With A Quinazoline Inhibitor
pdb|3SMJ|A Chain A, Human Poly(Adp-Ribose) Polymerase 14 (Parp14ARTD8) -
Catalytic Domain In Complex With A Pyrimidine-Like
Inhibitor
pdb|3SMJ|B Chain B, Human Poly(Adp-Ribose) Polymerase 14 (Parp14ARTD8) -
Catalytic Domain In Complex With A Pyrimidine-Like
Inhibitor
pdb|4F1L|A Chain A, Human Artd8 (Parp14, Bal2) - Catalytic Domain In Complex
With Inhibitor A16(Z)
pdb|4F1L|B Chain B, Human Artd8 (Parp14, Bal2) - Catalytic Domain In Complex
With Inhibitor A16(Z)
pdb|4F1L|C Chain C, Human Artd8 (Parp14, Bal2) - Catalytic Domain In Complex
With Inhibitor A16(Z)
pdb|4F1L|D Chain D, Human Artd8 (Parp14, Bal2) - Catalytic Domain In Complex
With Inhibitor A16(Z)
pdb|4F1Q|A Chain A, Human Artd8 (Parp14, Bal2) - Catalytic Domain In Complex
With A16(E)
pdb|4F1Q|B Chain B, Human Artd8 (Parp14, Bal2) - Catalytic Domain In Complex
With A16(E)
Length = 193
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 56 FALWVLSSVYS-GHHSILIPPSEVEVNPALWLSAVS 90
+ + VL+ +Y+ G+HS+++PPS+ NP V+
Sbjct: 131 YYVRVLTGIYTHGNHSLIVPPSKNPQNPTDLYDTVT 166
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 145 FALWVLSSVYS-GHHSILIPPSEVEVNPALWLSAVS 179
+ + VL+ +Y+ G+HS+++PPS+ NP V+
Sbjct: 131 YYVRVLTGIYTHGNHSLIVPPSKNPQNPTDLYDTVT 166
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
Query: 3 AYLDFSVSTTGMLAGIKMSHAAV----TSLCRSMKLACELYPSRHIALC--LDPYCGLGF 56
AYL ++ +T AG+ MSH V L + P + AL L Y +G
Sbjct: 186 AYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGL 245
Query: 57 ALWVLSSVYSGHHSILIPPSEVEVNPALWL 86
+ + + + G+ ++L P PA W+
Sbjct: 246 VIGICAPILGGYPAVLTSPVSFLQRPARWM 275
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,955,035
Number of Sequences: 62578
Number of extensions: 319601
Number of successful extensions: 726
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 718
Number of HSP's gapped (non-prelim): 9
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)