Query psy14342
Match_columns 316
No_of_seqs 112 out of 1702
Neff 9.8
Searched_HMMs 29240
Date Fri Aug 16 17:28:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14342.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14342hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pg4_A Acetyl-COA synthetase; 100.0 3.5E-45 1.2E-49 353.4 22.5 299 1-305 257-622 (652)
2 3kxw_A Saframycin MX1 syntheta 100.0 1.5E-45 5E-50 352.7 16.6 312 1-314 168-577 (590)
3 4gs5_A Acyl-COA synthetase (AM 100.0 2.5E-45 8.4E-50 330.1 16.2 282 1-304 38-354 (358)
4 1mdb_A 2,3-dihydroxybenzoate-A 100.0 2.7E-45 9.3E-50 347.2 17.0 298 1-312 183-538 (539)
5 3e7w_A D-alanine--poly(phospho 100.0 8.5E-45 2.9E-49 341.7 18.5 298 1-304 144-503 (511)
6 3r44_A Fatty acyl COA syntheta 100.0 2.2E-44 7.6E-49 339.3 19.7 291 1-304 171-513 (517)
7 4fuq_A Malonyl COA synthetase; 100.0 1.4E-44 4.8E-49 339.6 18.1 288 1-304 156-500 (503)
8 3fce_A D-alanine--poly(phospho 100.0 1.7E-44 5.7E-49 339.8 17.0 301 1-306 145-506 (512)
9 3ipl_A 2-succinylbenzoate--COA 100.0 4.4E-44 1.5E-48 336.1 19.6 290 1-304 164-497 (501)
10 3ni2_A 4-coumarate:COA ligase; 100.0 9.9E-45 3.4E-49 343.1 13.6 294 1-303 179-534 (536)
11 2d1s_A Luciferase, luciferin 4 100.0 4.4E-44 1.5E-48 339.5 17.1 290 1-304 193-543 (548)
12 3g7s_A Long-chain-fatty-acid-- 100.0 4.4E-44 1.5E-48 339.6 15.5 292 1-306 181-544 (549)
13 1ry2_A Acetyl-coenzyme A synth 100.0 1E-43 3.6E-48 343.5 17.3 299 1-305 263-638 (663)
14 3etc_A AMP-binding protein; ad 100.0 9.5E-44 3.3E-48 339.1 16.4 293 1-304 226-579 (580)
15 3o83_A Peptide arylation enzym 100.0 2.3E-44 7.8E-49 341.2 10.9 292 1-305 192-541 (544)
16 1t5h_X 4-chlorobenzoyl COA lig 100.0 1.4E-43 4.9E-48 332.8 16.0 286 1-303 154-503 (504)
17 3nyq_A Malonyl-COA ligase; A/B 100.0 2.7E-43 9.1E-48 331.0 17.5 286 1-301 156-505 (505)
18 3rix_A Luciferase, luciferin 4 100.0 2.8E-44 9.4E-49 341.1 10.0 291 1-305 191-542 (550)
19 3gqw_A Fatty acid AMP ligase; 100.0 3.6E-43 1.2E-47 335.1 17.3 302 1-304 177-563 (576)
20 1v25_A Long-chain-fatty-acid-C 100.0 7.9E-44 2.7E-48 337.3 9.2 295 1-304 177-536 (541)
21 4dg8_A PA1221; ANL superfamily 100.0 1.5E-42 5.1E-47 332.9 16.6 289 1-304 165-513 (620)
22 3l8c_A D-alanine--poly(phospho 100.0 8.4E-43 2.9E-47 328.9 14.4 301 1-306 146-514 (521)
23 3c5e_A Acyl-coenzyme A synthet 100.0 2.9E-42 9.9E-47 328.3 17.4 291 1-304 207-562 (570)
24 1amu_A GRSA, gramicidin synthe 100.0 7.5E-43 2.6E-47 331.9 13.0 290 1-303 183-528 (563)
25 2v7b_A Benzoate-coenzyme A lig 100.0 9.3E-43 3.2E-47 329.1 13.6 288 1-300 184-528 (529)
26 4gr5_A Non-ribosomal peptide s 100.0 2.7E-43 9.3E-48 335.6 8.7 291 1-301 215-568 (570)
27 3ivr_A Putative long-chain-fat 100.0 6.4E-43 2.2E-47 328.8 11.0 289 1-305 161-502 (509)
28 3rg2_A Enterobactin synthase c 100.0 1E-41 3.5E-46 327.5 17.4 290 1-304 185-534 (617)
29 3tsy_A Fusion protein 4-coumar 100.0 5E-42 1.7E-46 345.4 8.4 296 1-305 226-583 (979)
30 2vsq_A Surfactin synthetase su 100.0 6.1E-40 2.1E-44 338.2 15.3 292 1-302 608-958 (1304)
31 3ite_A SIDN siderophore synthe 100.0 5.4E-40 1.8E-44 312.4 10.6 296 1-310 176-549 (562)
32 3qov_A Phenylacetate-coenzyme 100.0 3.7E-36 1.2E-40 277.5 21.0 281 1-297 87-430 (436)
33 2y4o_A Phenylacetate-coenzyme 100.0 4.5E-36 1.5E-40 277.5 17.0 283 1-299 93-439 (443)
34 2y27_A Phenylacetate-coenzyme 100.0 7.1E-35 2.4E-39 268.9 19.0 281 1-297 91-432 (437)
35 3t5a_A Long-chain-fatty-acid-- 99.9 1.3E-26 4.5E-31 215.9 9.2 203 1-205 184-472 (480)
36 3hgu_A EHPF; phenazine, antibi 99.8 5.1E-20 1.8E-24 165.8 10.1 196 1-212 92-368 (369)
37 3lax_A Phenylacetate-coenzyme 99.7 2.4E-17 8.1E-22 122.0 8.5 92 201-295 1-101 (109)
38 3gxs_A Phenylacetate-coenzyme 99.7 2.5E-17 8.6E-22 121.7 8.6 92 201-296 1-102 (109)
39 4epl_A Jasmonic acid-amido syn 88.1 1 3.4E-05 42.2 6.8 27 200-226 428-454 (581)
40 3rix_A Luciferase, luciferin 4 84.7 7.4 0.00025 35.9 11.1 84 18-106 49-135 (550)
41 4b2g_A GH3-1 auxin conjugating 83.2 0.38 1.3E-05 45.3 1.4 27 200-226 433-459 (609)
42 3g7s_A Long-chain-fatty-acid-- 81.3 9.8 0.00034 35.1 10.4 83 18-105 51-136 (549)
43 4eql_A 4-substituted benzoates 80.9 0.41 1.4E-05 44.8 0.8 27 200-226 421-447 (581)
44 3ni2_A 4-coumarate:COA ligase; 80.4 12 0.00041 34.3 10.7 82 19-105 49-133 (536)
45 2d1s_A Luciferase, luciferin 4 79.5 13 0.00043 34.3 10.5 81 19-104 52-135 (548)
46 1v25_A Long-chain-fatty-acid-C 79.0 14 0.00047 34.0 10.5 83 17-104 45-130 (541)
47 4fuq_A Malonyl COA synthetase; 78.8 12 0.00041 34.0 10.0 81 19-104 28-111 (503)
48 3ivr_A Putative long-chain-fat 78.7 11 0.00037 34.3 9.7 82 18-104 30-114 (509)
49 2v7b_A Benzoate-coenzyme A lig 78.2 14 0.00047 33.8 10.3 81 19-104 48-131 (529)
50 3c5e_A Acyl-coenzyme A synthet 78.0 14 0.00048 34.3 10.3 84 17-105 71-158 (570)
51 3r44_A Fatty acyl COA syntheta 78.0 16 0.00053 33.4 10.5 82 18-104 42-126 (517)
52 3etc_A AMP-binding protein; ad 78.0 13 0.00045 34.6 10.1 82 17-103 84-168 (580)
53 3t5a_A Long-chain-fatty-acid-- 75.6 34 0.0011 30.5 12.0 86 17-105 56-144 (480)
54 4gr5_A Non-ribosomal peptide s 74.3 14 0.00049 34.1 9.3 79 19-102 100-181 (570)
55 1pg4_A Acetyl-COA synthetase; 74.0 23 0.0008 33.4 10.8 81 17-102 105-188 (652)
56 3l8c_A D-alanine--poly(phospho 73.8 15 0.0005 33.5 9.2 79 19-102 29-110 (521)
57 3ipl_A 2-succinylbenzoate--COA 73.2 17 0.00057 32.9 9.4 80 19-103 26-105 (501)
58 1amu_A GRSA, gramicidin synthe 72.8 19 0.00066 33.2 9.8 80 19-103 64-146 (563)
59 1t5h_X 4-chlorobenzoyl COA lig 72.6 17 0.00059 32.9 9.3 77 18-99 28-107 (504)
60 4b2g_A GH3-1 auxin conjugating 71.5 1.7 5.8E-05 40.9 2.1 26 2-27 101-127 (609)
61 1ry2_A Acetyl-coenzyme A synth 70.7 30 0.001 32.7 10.8 81 18-103 112-196 (663)
62 3kxw_A Saframycin MX1 syntheta 69.9 17 0.00059 33.6 8.8 84 17-102 38-124 (590)
63 1mdb_A 2,3-dihydroxybenzoate-A 69.6 20 0.00067 32.9 9.0 80 18-102 49-131 (539)
64 3o83_A Peptide arylation enzym 69.0 20 0.00067 33.0 8.9 80 18-102 54-136 (544)
65 3fce_A D-alanine--poly(phospho 68.4 24 0.00081 32.0 9.3 77 19-100 26-105 (512)
66 3tsy_A Fusion protein 4-coumar 66.7 29 0.00098 34.6 10.1 82 18-104 87-171 (979)
67 4eql_A 4-substituted benzoates 66.4 3.1 0.0001 39.0 2.7 25 3-27 96-121 (581)
68 4epl_A Jasmonic acid-amido syn 65.9 3 0.0001 39.0 2.6 25 3-27 101-126 (581)
69 3rg2_A Enterobactin synthase c 64.0 31 0.001 32.3 9.3 80 19-103 50-132 (617)
70 3gqw_A Fatty acid AMP ligase; 64.0 48 0.0016 30.3 10.5 86 17-104 47-139 (576)
71 4dg8_A PA1221; ANL superfamily 63.7 36 0.0012 31.9 9.7 77 19-100 52-131 (620)
72 2cvi_A 75AA long hypothetical 63.1 25 0.00085 22.9 6.2 47 216-267 15-61 (83)
73 3ite_A SIDN siderophore synthe 62.9 54 0.0018 30.0 10.6 78 18-101 54-134 (562)
74 3e7w_A D-alanine--poly(phospho 55.0 46 0.0016 30.1 8.6 78 18-100 25-106 (511)
75 2zbc_A 83AA long hypothetical 53.1 32 0.0011 22.2 5.4 47 216-267 15-61 (83)
76 3nyq_A Malonyl-COA ligase; A/B 50.5 48 0.0016 30.0 7.9 78 18-102 47-124 (505)
77 2vsq_A Surfactin synthetase su 43.8 82 0.0028 32.5 9.2 79 19-102 489-570 (1304)
78 2djw_A Probable transcriptiona 36.5 42 0.0015 22.2 4.0 33 216-249 15-47 (92)
79 2dbb_A Putative HTH-type trans 28.3 1.7E+02 0.0058 21.2 7.1 51 217-272 83-134 (151)
80 2cg4_A Regulatory protein ASNC 27.8 1.2E+02 0.004 22.2 5.5 47 216-267 82-128 (152)
81 4a4j_A Pacszia, cation-transpo 26.9 1.1E+02 0.0036 18.3 4.6 30 215-245 16-45 (69)
82 4ap8_A Molybdopterin synthase 25.8 1.9E+02 0.0066 21.0 6.8 70 202-273 5-80 (135)
83 2e1c_A Putative HTH-type trans 22.1 2.5E+02 0.0084 21.1 6.5 52 215-272 99-150 (171)
84 2cyy_A Putative HTH-type trans 21.3 2.4E+02 0.0081 20.4 6.3 52 215-272 79-130 (151)
85 2l69_A Rossmann 2X3 fold prote 20.0 83 0.0028 21.2 2.8 24 202-225 17-44 (134)
No 1
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=3.5e-45 Score=353.45 Aligned_cols=299 Identities=16% Similarity=0.103 Sum_probs=224.3
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHH-HHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLC-RSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~-~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 79 (316)
|++||+|||||||.||||+++|++++..+ ..+...+++.++|+++...|++|++|+.+.++.++..|+++++.+.....
T Consensus 257 d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~ 336 (652)
T 1pg4_A 257 DPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNW 336 (652)
T ss_dssp SEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTS
T ss_pred CCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCC
Confidence 68999999999999999999999987665 45566789999999999999999999866689999999999998764444
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHHhh-h----hhcccccccc--------------------cccccccch
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAV-T----SLCRSMKLAC--------------------ELYPSRHIA 134 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~-~----~~~~~~~ls~--------------------e~~~~yG~t 134 (316)
.+|..+++.++++++|+++.+|+++..+....... . ...+.+-..+ .+.+.||+|
T Consensus 337 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~T 416 (652)
T 1pg4_A 337 PTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQT 416 (652)
T ss_dssp SSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCG
T ss_pred CCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCc
Confidence 57889999999999999999999987765543211 0 0011111111 267799999
Q ss_pred hccCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEec--C---CCcccCCCcCC--------
Q psy14342 135 LCLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSA--V---SQYRVRDTFCS-------- 189 (316)
Q Consensus 135 e~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~--~---~gY~~~~~~~~-------- 189 (316)
|++.......+.. .....++.+.|++|++ +++|++ |+++| | .|||++++.+.
T Consensus 417 E~~~~~~~~~~~~---~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~ 493 (652)
T 1pg4_A 417 ETGGFMITPLPGA---IELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFK 493 (652)
T ss_dssp GGSSCSBCCCTTT---CCBCTTCCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSST
T ss_pred ccccceecCCCCC---cCccCCccccCcCCCeEEEECCCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCC
Confidence 9976443332210 1123355667899999 888863 99999 5 89999876431
Q ss_pred -----CCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhh
Q psy14342 190 -----CNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEA 255 (316)
Q Consensus 190 -----~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~ 255 (316)
+|.|++++ |. +||.||+||++|+||+|.|||++|.+ ||.|.+|+|++.. +.+++++++.+.....
T Consensus 494 g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~-~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~ 572 (652)
T 1pg4_A 494 NMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVA-HPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPS 572 (652)
T ss_dssp TSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHH-STTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC
T ss_pred CEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHh-CCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCC
Confidence 25566653 43 99999999999999999999999999 9999999999973 3578888776543322
Q ss_pred cchHHHHHHHHHHhcCe--eecEEEEEcCCCcccCCCchhhHHHHHHHHHcC
Q psy14342 256 LDLVPLVTNAVLEEHHL--IVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 305 (316)
Q Consensus 256 ~~l~~~~~~~l~~~~~~--~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~ 305 (316)
+++.+++++.+.+.... .+..+.+++ .||+|++||++|++|++.+...
T Consensus 573 ~~~~~~l~~~l~~~l~~~~~P~~i~~v~--~lP~T~sGKi~R~~L~~~~~~~ 622 (652)
T 1pg4_A 573 PELYAEVRNWVRKEIGPLATPDVLHWTD--SLPKTRSGKIMRRILRKIAAGD 622 (652)
T ss_dssp HHHHHHHHHHHHHHTCGGGCCSEEEECS--CCCBCTTSCBCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCCcCCeEEEEcC--CCCCCCCccchHHHHHHHHhCC
Confidence 33444555555544332 224555555 9999999999999999998864
No 2
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=1.5e-45 Score=352.66 Aligned_cols=312 Identities=19% Similarity=0.217 Sum_probs=235.3
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||||++||+++...+......+++.++|+++.++|++|++|++..++.+++.|+++++.++..+..
T Consensus 168 d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 247 (590)
T 3kxw_A 168 DIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQ 247 (590)
T ss_dssp SEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHH
T ss_pred CeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999877889999999999988766666
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhh------hhcccccccc-----------------------cccccc
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT------SLCRSMKLAC-----------------------ELYPSR 131 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~------~~~~~~~ls~-----------------------e~~~~y 131 (316)
+|..|++.++++++|++..+|..+..+........ ...+.+-.++ .+++.|
T Consensus 248 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~Y 327 (590)
T 3kxw_A 248 NPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCY 327 (590)
T ss_dssp CTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEE
T ss_pred CHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCcccccccc
Confidence 89999999999999988887776654433211100 0001111111 157789
Q ss_pred cchhccCCCCCCCc-----eEEEE-----------------eeeccCcccccCCCceEEecCc------------eEEec
Q psy14342 132 HIALCLDPYCGLGF-----ALWVL-----------------SSVYSGHHSILIPPSEVEVNPA------------LWLSA 177 (316)
Q Consensus 132 G~te~~~~~~~~~~-----~~~~~-----------------~~~~~g~~~~~~~g~~~i~d~~------------l~v~~ 177 (316)
|+||++.......+ ..... .....++.|.|++++ +++|++ |+++|
T Consensus 328 G~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~v-~i~d~~~~~~~~~g~~GEl~v~g 406 (590)
T 3kxw_A 328 GLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEV-KIIDPDTLIPCDFDQVGEIWVQS 406 (590)
T ss_dssp ECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSEE-EEECTTTCCBCCTTBCEEEEEES
T ss_pred ccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCCe-EEEcCCCCcCCCCCCEEEEEEeC
Confidence 99999754322111 00000 000011233356663 344432 99999
Q ss_pred C---CCcccCCCcC-------------------CCCceeeecCc---CCcccceeEECCcccChHhHHHHH-HHhccccc
Q psy14342 178 V---SQYRVRDTFC-------------------SCNGALYQGAE---RLALDETIMLRGMRYHPIDIENSV-MRAHKKIA 231 (316)
Q Consensus 178 ~---~gY~~~~~~~-------------------~~d~g~~~~g~---~GR~dd~i~~~G~~v~p~eIE~~l-~~~~p~v~ 231 (316)
+ .|||++++.+ ++|.|++++|. +||.||+||++|+||+|.|||++| .. ||.|.
T Consensus 407 ~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~ddG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~-~~~v~ 485 (590)
T 3kxw_A 407 NSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHS-PLHHV 485 (590)
T ss_dssp TTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEETTEEEEEEESSCHHHHHHHTTHHHHHHHHHHHS-GGGGG
T ss_pred CcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEECCEEEEEcCccceEEECCEecCHHHHHHHHHhc-Ccccc
Confidence 9 9999987643 22556566554 999999999999999999999999 55 99998
Q ss_pred --eeEEEeeC----CcEEEEEEecCCc---hhhcchHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHH
Q psy14342 232 --ECAVFTWT----NLLVVVVELDGNE---SEALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGF 302 (316)
Q Consensus 232 --~~~v~~~~----~~~~~~v~~~~~~---~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~ 302 (316)
+|+|+++. +.+++++++.... .+.+++.+++++.+...++.+...+.++..++||+|++||++|++|++.+
T Consensus 486 ~~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~ 565 (590)
T 3kxw_A 486 LGKCAAFVIQEEHEYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHL 565 (590)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSCCCCEEEEEETTCSCCCSCHHHHHHHHHHHH
T ss_pred CccEEEEEecCCCCceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCCceeEEEEECCCccCcCCCcHHHHHHHHHHH
Confidence 78888873 3567777766542 34568899999999877777766888998889999999999999999999
Q ss_pred HcCCCCcchhhc
Q psy14342 303 LADQLDPIYVAY 314 (316)
Q Consensus 303 ~~~~~~~~~~~~ 314 (316)
.++++..+..|.
T Consensus 566 ~~~~~~~~~~~~ 577 (590)
T 3kxw_A 566 LDKTLPIVATWQ 577 (590)
T ss_dssp HHTCSCCSEEEE
T ss_pred HcCCCceeeeec
Confidence 999988776544
No 3
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=2.5e-45 Score=330.12 Aligned_cols=282 Identities=14% Similarity=0.092 Sum_probs=212.6
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+|||+|||||||.||||++||+++..++......++++++|++++++|++|++|++. ++.++..|+++++.++..
T Consensus 38 ~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~-~~~~l~~g~~~~~~~~~~--- 113 (358)
T 4gs5_A 38 AREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMM-LVRGMELDWELTVTEPTA--- 113 (358)
T ss_dssp CSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEEECCCS---
T ss_pred CCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHH-HHHHHHhCcEEEecCccc---
Confidence 6899999999999999999999999999999999999999999999999999999987 788999999999886542
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhh--hhcccccccc----------------cccccccchhccCCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT--SLCRSMKLAC----------------ELYPSRHIALCLDPYCG 142 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~--~~~~~~~ls~----------------e~~~~yG~te~~~~~~~ 142 (316)
++ ++.++++++|+++.+|+++..+........ ...+.+-.++ .+++.||+||++.....
T Consensus 114 ~~---~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~~~YG~TEt~~~~~~ 190 (358)
T 4gs5_A 114 NP---LAGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLGGAPVNHALAMQISDLAMPVYQSYGMTETVSHVAL 190 (358)
T ss_dssp CT---TTTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEECSSCCCHHHHHHHHTCSSCEEEEEECGGGSSEEEE
T ss_pred cH---HHHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEcccCCCchheecccccCceEEeccccccccceeec
Confidence 23 578899999999999998876654332211 1112222222 28899999998753321
Q ss_pred CCceEEEEeeeccCcccccCCCce-EEec-CceEEecC---CCcccCCCcCCCCceeeecCc---CCcccceeEECCccc
Q psy14342 143 LGFALWVLSSVYSGHHSILIPPSE-VEVN-PALWLSAV---SQYRVRDTFCSCNGALYQGAE---RLALDETIMLRGMRY 214 (316)
Q Consensus 143 ~~~~~~~~~~~~~g~~~~~~~g~~-~i~d-~~l~v~~~---~gY~~~~~~~~~d~g~~~~g~---~GR~dd~i~~~G~~v 214 (316)
.. ......|..+++.||++ .+.+ ++|+++|+ .||+. ++|.|++++++ +||.||+||++|+||
T Consensus 191 ~~-----~~~~~~g~~~~~~pgv~~~~~~~Gel~~~g~~~~~g~~~-----TGDlg~~d~~g~~~~GR~dd~Ik~~G~~v 260 (358)
T 4gs5_A 191 KA-----LNGPEASELYVFLPGIQYGVDERGCLHISGAVTNGQTVQ-----TNDLVEIHGNAFQWIGRADNVINSGGVKI 260 (358)
T ss_dssp EE-----CSSTTCCSCEEECTTCEEEECTTSEEEEESGGGTTCCEE-----EEEEEEECSSEEEEEEEGGGEEEETTEEE
T ss_pred cc-----ccccccceeeccCCCeEEEecCcCceEEecccccCccee-----cCCccccccCceEEcccccCeEEECCEEE
Confidence 11 01112234445889999 5544 34999998 34432 45888887665 999999999999999
Q ss_pred ChHhHHHHHH---HhccccceeEEEe-e-----CCcEEEEEEecCCchhhcchHHHHHHHHHHhcCeeecEEEEEcCCCc
Q psy14342 215 HPIDIENSVM---RAHKKIAECAVFT-W-----TNLLVVVVELDGNESEALDLVPLVTNAVLEEHHLIVGVAVVVDPGVV 285 (316)
Q Consensus 215 ~p~eIE~~l~---~~~p~v~~~~v~~-~-----~~~~~~~v~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l 285 (316)
+|.|||++|. + ||.|.+|+|+. . ++.++++++......+.+++.++++++|. .+..| ..+.+++ +|
T Consensus 261 ~p~eIE~~l~~~~~-~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~~~~~~l~~~l~~~L~-~~~~P-~~i~~v~--~l 335 (358)
T 4gs5_A 261 VLDQIDQRIAAVFH-HLNIGNAFFCWWEPDAKLGQKLVLVIENAMPEALTERLTAEIRSRVS-TYENP-KHIYFAK--AF 335 (358)
T ss_dssp EHHHHHHHHHHHHH-HHTCCCCEEEEEEEETTTEEEEEEEEESCCCHHHHHHHHHHHHHHSC-GGGSC-SCEEEES--SC
T ss_pred CHHHHHHHHHHhcc-CCCccEEEEEEecCCccCCEEEEEEEECCCCCcCHHHHHHHHHhhCC-CCCCc-eEEEEEC--Cc
Confidence 9999998774 5 89999988774 3 23566766665555555678888887776 45554 4677776 89
Q ss_pred ccCCCchhhHHHHHHHHHc
Q psy14342 286 PINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 286 P~t~~gKi~r~~l~~~~~~ 304 (316)
|+|++||++|++|++++++
T Consensus 336 P~t~~GKi~R~~L~~~l~e 354 (358)
T 4gs5_A 336 AKTQTDKIDKRATFQKLSD 354 (358)
T ss_dssp CBCTTSCBCHHHHHHHTC-
T ss_pred CCCCCCChhHHHHHHHhhh
Confidence 9999999999999999876
No 4
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=2.7e-45 Score=347.18 Aligned_cols=298 Identities=15% Similarity=0.129 Sum_probs=224.4
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhH-HHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFAL-WVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~-~~~~~l~~G~~~v~~~~~~~~ 79 (316)
|+++|+|||||||.||||++||+++...+......+++.++|+++.++|++|.+++.. .++.++..|+++++.+..
T Consensus 183 d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~--- 259 (539)
T 1mdb_A 183 DVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSP--- 259 (539)
T ss_dssp SEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSS---
T ss_pred ceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCC---
Confidence 6899999999999999999999999999888888899999999999999999999875 588999999999997642
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHHhhhh---hcccccccc-----------------cccccccchhccCC
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTS---LCRSMKLAC-----------------ELYPSRHIALCLDP 139 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~---~~~~~~ls~-----------------e~~~~yG~te~~~~ 139 (316)
+|..+++.++++++|+++.+|+++..+......... ..+.+-.++ .+++.||+||++..
T Consensus 260 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~ 338 (539)
T 1mdb_A 260 -SPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVN 338 (539)
T ss_dssp -SHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEE
T ss_pred -CHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCccc
Confidence 688999999999999999999988766554332110 111111222 27889999996422
Q ss_pred CCCCCceEEEEeeeccCcccccCCCc-e-EEecCc-----------eEEecC---CCcccCCCcCC-----------CCc
Q psy14342 140 YCGLGFALWVLSSVYSGHHSILIPPS-E-VEVNPA-----------LWLSAV---SQYRVRDTFCS-----------CNG 192 (316)
Q Consensus 140 ~~~~~~~~~~~~~~~~g~~~~~~~g~-~-~i~d~~-----------l~v~~~---~gY~~~~~~~~-----------~d~ 192 (316)
....... .....++.|.|+++. + +++|++ |+++|+ .|||++++.+. +|.
T Consensus 339 ~~~~~~~----~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl 414 (539)
T 1mdb_A 339 YTRLDDP----EEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDI 414 (539)
T ss_dssp ECCTTSC----HHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEE
T ss_pred ccCCCCc----HHhcCCCCCcccCCCceEEEECCCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCce
Confidence 2111100 001112444577654 6 777753 999999 89999976542 256
Q ss_pred eeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhcchHHHHH
Q psy14342 193 ALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEALDLVPLVT 263 (316)
Q Consensus 193 g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~ 263 (316)
|++++ |. +||.||+||++|+||+|.|||++|.+ ||.|.+|+|++.. +.++++++......+.+++.+.++
T Consensus 415 g~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~-~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~l~~~l~ 493 (539)
T 1mdb_A 415 VRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLA-HPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLR 493 (539)
T ss_dssp EEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTT-STTEEEEEEEEEEETTTEEEEEEEEEESSSCCCHHHHHHHHH
T ss_pred EEECCCCcEEEeccccceEEECCEEECHHHHHHHHHh-CCCcceEEEEeccccccCceEEEEEEECCCCCCHHHHHHHHH
Confidence 66654 43 99999999999999999999999999 9999999999883 356777766644444566777777
Q ss_pred HH-HHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcCCCCcchh
Q psy14342 264 NA-VLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLDPIYV 312 (316)
Q Consensus 264 ~~-l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~~~~~~~~ 312 (316)
++ +. .+..| ..+.+++ +||+|++||++|++|++.+.+ +++.+|.
T Consensus 494 ~~~L~-~~~~P-~~i~~v~--~lP~t~~GKi~r~~L~~~~~~-~i~~~y~ 538 (539)
T 1mdb_A 494 ERGLA-AYKIP-DRVEFVE--SFPQTGVGKVSKKALREAISE-KLLAGFK 538 (539)
T ss_dssp HTTCC-GGGSC-SEEEECS--SCCBCTTSCBCHHHHHHHHHH-HHHTC--
T ss_pred hCCCC-cccCC-CEEEEec--cCCCCCCcCEeHHHHHHHHHH-HHhcccc
Confidence 65 55 44444 4566665 899999999999999999886 6777764
No 5
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=8.5e-45 Score=341.70 Aligned_cols=298 Identities=12% Similarity=0.120 Sum_probs=222.0
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||||++||+++...+......+++.++|+++.++|++|+++++. ++.++..|+++++.+.. ...
T Consensus 144 ~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~-~~~ 221 (511)
T 3e7w_A 144 ETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMD-LYPCLQSGGTLHCVTKD-AVN 221 (511)
T ss_dssp SEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHH-HHHHHHTTCEEEECCHH-HHH
T ss_pred CeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHH-HHHHHhcCCEEEEcChh-hhc
Confidence 6899999999999999999999999999988888999999999999999999999876 89999999999987543 234
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhh---hcccccccc------------------cccccccchhccCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTS---LCRSMKLAC------------------ELYPSRHIALCLDP 139 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~---~~~~~~ls~------------------e~~~~yG~te~~~~ 139 (316)
+|..+++.++++++|+++.+|+++..+......... ..+.+..++ .+++.||+||++..
T Consensus 222 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~ 301 (511)
T 3e7w_A 222 KPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVA 301 (511)
T ss_dssp SHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSC
T ss_pred CHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheee
Confidence 788999999999999999999988765543321111 111111222 27889999999754
Q ss_pred CCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCC--------------C
Q psy14342 140 YCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCS--------------C 190 (316)
Q Consensus 140 ~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~--------------~ 190 (316)
................++.|.++||++ +++|++ |+++|+ .|||++++.+. +
T Consensus 302 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TG 381 (511)
T 3e7w_A 302 VTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTG 381 (511)
T ss_dssp SEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEE
T ss_pred eeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCC
Confidence 321110000000011124556899999 888864 999999 89999876542 2
Q ss_pred CceeeecCc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchh-hcchHHH
Q psy14342 191 NGALYQGAE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESE-ALDLVPL 261 (316)
Q Consensus 191 d~g~~~~g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~-~~~l~~~ 261 (316)
|.|++++|. +||.||+||++|+||+|.|||++|.+ ||.|.+|+|++.. +.+++++++...... ..++.+.
T Consensus 382 Dlg~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~-~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~ 460 (511)
T 3e7w_A 382 DAGFIQDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQ-SQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSA 460 (511)
T ss_dssp EEEEEETTEEEEEEESSSEEEETTEEEEHHHHHHHHHH-STTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHH
T ss_pred CeEEccCCeEEEEccccCEEEECCEEeCHHHHHHHHHh-CCCcceEEEEEEcCCCCceEEEEEEEeccccccchhhHHHH
Confidence 566666664 99999999999999999999999999 9999999999873 356777766654322 2234455
Q ss_pred HHHHHHHh---cCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 262 VTNAVLEE---HHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 262 ~~~~l~~~---~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
+++.+.+. +..| ..+.++ ++||+|++||++|++|++.+..
T Consensus 461 l~~~l~~~L~~~~~P-~~~~~v--~~lP~t~~GKi~R~~L~~~~~~ 503 (511)
T 3e7w_A 461 IKKELAASLPAYMIP-RKFIYQ--DHIQMTANGKIDRKRIGEEVLV 503 (511)
T ss_dssp HHHHHHHHSCGGGSC-SEEEEC--SCCCBCTTSCBCHHHHHHHHHH
T ss_pred HHHHHHhhCchhhCC-eeEEEe--ccCCCCCCcCccHHHHHhHHhh
Confidence 55555543 3333 445554 4899999999999999999875
No 6
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=2.2e-44 Score=339.26 Aligned_cols=291 Identities=15% Similarity=0.123 Sum_probs=218.7
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||||++||+++...+......+++.++|+++.++|++|++++...++.. +.|+++++.+..
T Consensus 171 d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~-~~G~~~v~~~~~---- 245 (517)
T 3r44_A 171 DNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSA-MRGVTLISMPQF---- 245 (517)
T ss_dssp SEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHH-HHTCEEEECSSC----
T ss_pred CeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHH-hcCeEEEEeCCC----
Confidence 689999999999999999999999999999888999999999999999999999998744444 489999987642
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhh---hcccccccc----------------cccccccchhccCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTS---LCRSMKLAC----------------ELYPSRHIALCLDPYC 141 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~---~~~~~~ls~----------------e~~~~yG~te~~~~~~ 141 (316)
++..+++.++++++++++.+|+++..+......... ..+.+-.++ .+++.||+||++....
T Consensus 246 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~YG~TE~~~~~~ 325 (517)
T 3r44_A 246 DATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGT 325 (517)
T ss_dssp CHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGTTCEE
T ss_pred CHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhcCCcEEEeeccccccccee
Confidence 688999999999999999999988766554332111 111122222 2888999999975432
Q ss_pred CCCceEEEEeeeccCcccccCCCce-EEecCc----------eEEecC---CCcccCCCcCCC----------Cceeeec
Q psy14342 142 GLGFALWVLSSVYSGHHSILIPPSE-VEVNPA----------LWLSAV---SQYRVRDTFCSC----------NGALYQG 197 (316)
Q Consensus 142 ~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~----------l~v~~~---~gY~~~~~~~~~----------d~g~~~~ 197 (316)
...+. ......++.+.++++.+ .+.|++ |+++|+ .|||++++.+.. |.|++++
T Consensus 326 ~~~~~---~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~ 402 (517)
T 3r44_A 326 LLLSE---DALRKAGSAGRATMFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDD 402 (517)
T ss_dssp EECGG---GTTTTTTCCBEECTTEEEEEECTTSCEESSEEEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECT
T ss_pred ecCCc---cccccCCCCCcCCCCeEEEEECCCCCCCCCCCeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcC
Confidence 11110 00112234556889999 777753 999999 999999876543 6666654
Q ss_pred -Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhcchHHHHHHHHHH
Q psy14342 198 -AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEALDLVPLVTNAVLE 268 (316)
Q Consensus 198 -g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~~~l~~ 268 (316)
|. +||.||+||++|+||+|.|||++|.+ ||+|.+|+|++.. +.+++++.......+.+++.+++++.+.
T Consensus 403 dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~-~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~~~~~~l~~~l~~~L~- 480 (517)
T 3r44_A 403 EGYLYIKDRLKDMIISGGENVYPAEIESVIIG-VPGVSEVAVIGLPDEKWGEIAAAIVVADQNEVSEQQIVEYCGTRLA- 480 (517)
T ss_dssp TSCEEEEECGGGCEEETTEEECHHHHHHHHTT-STTEEEEEEEEEEETTTEEEEEEEEEECTTTCCHHHHHHHHHHHSC-
T ss_pred CeeEEEecCCcCEEEECCEEECHHHHHHHHHh-CCCEeEEEEEeccccccCceEEEEEECCCCCCCHHHHHHHHHHhCC-
Confidence 43 99999999999999999999999999 9999999999883 2355555333333445678888887776
Q ss_pred hcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 269 EHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 269 ~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
.+..| ..+.+++ +||+|++||++|++|++.|.+
T Consensus 481 ~~~~P-~~i~~v~--~lP~t~~GKi~R~~L~~~~~~ 513 (517)
T 3r44_A 481 RYKLP-KKVIFAE--AIPRNPTGKILKTVLREQYSA 513 (517)
T ss_dssp GGGSC-SEEEECS--CCCBCTTCCBCHHHHHHHHGG
T ss_pred CCCCC-CEEEEEC--CCCCCCCcCccHHHHHHHHHh
Confidence 45554 4566655 899999999999999999986
No 7
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.4e-44 Score=339.56 Aligned_cols=288 Identities=15% Similarity=0.124 Sum_probs=218.7
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||||+++|+++...+......+++.++|+++.++|++|.+|+...++.+++.|+++++.+..
T Consensus 156 d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~---- 231 (503)
T 4fuq_A 156 DLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKF---- 231 (503)
T ss_dssp SEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSC----
T ss_pred CeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCC----
Confidence 6899999999999999999999999999999999999999999999999999999877678899999999987642
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhh---cccccccc-----------------cccccccchhccCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSL---CRSMKLAC-----------------ELYPSRHIALCLDPY 140 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~---~~~~~ls~-----------------e~~~~yG~te~~~~~ 140 (316)
+|..+++.++ ++++++.+|+++..+.......... .+.+-.++ .+++.||+||++...
T Consensus 232 ~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~ 309 (503)
T 4fuq_A 232 DPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNT 309 (503)
T ss_dssp CHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECB
T ss_pred CHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCccc
Confidence 6889999998 7898999999887665433221110 11111112 278899999987543
Q ss_pred CCCCceEEEEeeeccCcccccCCCce-EEecCc------------eEEecC---CCcccCCCcCCC-----------Cce
Q psy14342 141 CGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV---SQYRVRDTFCSC-----------NGA 193 (316)
Q Consensus 141 ~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~---~gY~~~~~~~~~-----------d~g 193 (316)
..... .....++.|.++||++ +++|++ |+++|+ .|||++++.+.. |.|
T Consensus 310 ~~~~~-----~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~ 384 (503)
T 4fuq_A 310 SNPYD-----GDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLG 384 (503)
T ss_dssp CCCSS-----SCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEE
T ss_pred ccCCC-----CCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeE
Confidence 21111 1112234555899999 988842 999999 999998776532 555
Q ss_pred eeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-hhhcchHHHHH
Q psy14342 194 LYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-SEALDLVPLVT 263 (316)
Q Consensus 194 ~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-~~~~~l~~~~~ 263 (316)
++++ |. +||.||+||++|+||+|.|||++|.+ ||+|.+|+|++.. +.++++++..+.. .+.+++.+.++
T Consensus 385 ~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~-~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~ 463 (503)
T 4fuq_A 385 KIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDA-MPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLD 463 (503)
T ss_dssp EECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHT-STTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHB
T ss_pred EEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHh-CCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHHH
Confidence 5544 43 99999999999999999999999999 9999999999883 3566777665532 33456666666
Q ss_pred HHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 264 NAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
+.+. .+..| ..+.+++ +||+|++||++|++|++.|.+
T Consensus 464 ~~L~-~~~~P-~~i~~v~--~lP~t~~GKi~R~~L~~~~~~ 500 (503)
T 4fuq_A 464 GQLA-KFKMP-KKVIFVD--DLPRNTMGKVQKNVLRETYKD 500 (503)
T ss_dssp TTBC-GGGCC-SEEEEES--CCCBCTTSCBCHHHHHHHTTT
T ss_pred hhcc-cCCCC-CEEEEEC--CCCCCcccceeHHHHHHHHHH
Confidence 6665 44444 4677776 899999999999999998865
No 8
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.7e-44 Score=339.80 Aligned_cols=301 Identities=13% Similarity=0.089 Sum_probs=217.5
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||||++||+++...+......+++.++|+++.++|++|+++++. ++.++..|+++++.++. ...
T Consensus 145 d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~-~~~ 222 (512)
T 3fce_A 145 ENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMD-IYPSLVTGGTLWAIDKD-MIA 222 (512)
T ss_dssp SEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHH-HHHHHHTTCEEEECCHH-HHH
T ss_pred CeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHH-HHHHHhCCCEEEECCHH-Hhh
Confidence 6899999999999999999999999999988888999999999999999999999876 89999999999998653 235
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhh---hcccccccc------------------cccccccchhccCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTS---LCRSMKLAC------------------ELYPSRHIALCLDP 139 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~---~~~~~~ls~------------------e~~~~yG~te~~~~ 139 (316)
+|..+++.++++++++++.+|+++..+......... ..+.+-.++ .+++.||+||++..
T Consensus 223 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~ 302 (512)
T 3fce_A 223 RPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVA 302 (512)
T ss_dssp SHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSC
T ss_pred CHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhh
Confidence 788999999999999999999988655433221110 011111222 27889999999754
Q ss_pred CCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCCC--------------
Q psy14342 140 YCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCSC-------------- 190 (316)
Q Consensus 140 ~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~~-------------- 190 (316)
................++.|.++++.+ +++|++ |+++|+ .|||++++.+..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TG 382 (512)
T 3fce_A 303 VTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTG 382 (512)
T ss_dssp SEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEE
T ss_pred eeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCC
Confidence 321110000000011224556899999 887754 999999 999998765432
Q ss_pred CceeeecCc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchh-hcchHHH
Q psy14342 191 NGALYQGAE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESE-ALDLVPL 261 (316)
Q Consensus 191 d~g~~~~g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~-~~~l~~~ 261 (316)
|.|++++|. +||.||+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.+++++++...... ..++.+.
T Consensus 383 Dlg~~~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~-~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~ 461 (512)
T 3fce_A 383 DAGYVENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRA-CSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSA 461 (512)
T ss_dssp EEEEEETTEEEEEEEGGGCEEETTEEECHHHHHHHHHH-STTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHHHHH
T ss_pred ceEEecCCEEEEecccCCEEEECCEEECHHHHHHHHHh-CCCcceEEEEEEecCCCceEEEEEEecCCccccchhhhHHH
Confidence 556565554 99999999999999999999999999 9999999999873 346666666554322 2244555
Q ss_pred HHHHHHHhcCe--eecEEEEEcCCCcccCCCchhhHHHHHHHHHcCC
Q psy14342 262 VTNAVLEEHHL--IVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQ 306 (316)
Q Consensus 262 ~~~~l~~~~~~--~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~~ 306 (316)
+++.+.+.... .+..+.++ ++||+|++||++|++|++.+.+..
T Consensus 462 l~~~l~~~L~~~~~P~~~~~~--~~lP~t~~GKi~R~~L~~~~~~~~ 506 (512)
T 3fce_A 462 IKKELNERLPNYMIPRKFMYQ--SSIPMTPNGKVDRKKLLSEVTALE 506 (512)
T ss_dssp HHHHHHTTSCGGGSCSEEEEC--SCCCBCTTSSBCHHHHHHHHHC--
T ss_pred HHHHHHhhCchhcCCeEEEEe--cccCCCCCcChHHHHHHhhhhhcc
Confidence 66665544322 22344444 599999999999999999998743
No 9
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=4.4e-44 Score=336.06 Aligned_cols=290 Identities=13% Similarity=0.094 Sum_probs=208.2
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||||++||+++...+......+++.++|+++.++|++|.+|+.. ++.++..|+++++.++.
T Consensus 164 d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~~---- 238 (501)
T 3ipl_A 164 DIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSV-LLRAVIEGFTVRIVDKF---- 238 (501)
T ss_dssp SEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEECSSC----
T ss_pred CeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHH-HHHHHHcCceEEeCCCC----
Confidence 6899999999999999999999999999998899999999999999999999999987 88999999999998643
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhhcccccccc----------------cccccccchhccCCCCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMKLAC----------------ELYPSRHIALCLDPYCGLG 144 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~----------------e~~~~yG~te~~~~~~~~~ 144 (316)
+|..+++.++++++|+++.+|+++..+...........+.+..++ .+++.||+||++.......
T Consensus 239 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~ 318 (501)
T 3ipl_A 239 NAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGAKLSATMIETALQYNLPIYNSFGMTETCSQFLTAT 318 (501)
T ss_dssp CHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSSCCCHHHHHHHHHTTCCEEEEEEEGGGTEEEEEEC
T ss_pred CHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCCCCCHHHHHHHHHhCCCEeccccccccccceeecC
Confidence 688999999999999999999988766543322111112222222 2888999999864322111
Q ss_pred ceEEEEeeeccCcccccCCCce-EEecCc------eEEecC---CCcccCCCcCCC---------Cceeeec-Cc---CC
Q psy14342 145 FALWVLSSVYSGHHSILIPPSE-VEVNPA------LWLSAV---SQYRVRDTFCSC---------NGALYQG-AE---RL 201 (316)
Q Consensus 145 ~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------l~v~~~---~gY~~~~~~~~~---------d~g~~~~-g~---~G 201 (316)
+. ......++.|.|++|++ +++|++ |+++|+ .|||++++.+.. |.|++++ |. .|
T Consensus 319 ~~---~~~~~~~~~G~p~~~~~~~i~d~~~~~~GEl~v~g~~~~~gY~~~~~~t~~~~~g~~~TGDl~~~~~~G~l~~~G 395 (501)
T 3ipl_A 319 PE---MLHARPDTVGMPSANVDVKIKNPNKEGHGELMIKGANVMNGYLYPTDLTGTFENGYFNTGDIAEIDHEGYVMIYD 395 (501)
T ss_dssp HH---HHHHCTTCCBEECTTCEEEEESCCSSCCEEEEEESTTSCSCCSBSTTCCCSEETTEEEEEEEEEECTTSCEEEEE
T ss_pred cc---ccccCCCCCCCCCCCcEEEEecCCCCCccEEEEeccchhhhhCcChhhcchhcCCceecCCEEEEcCCCeEEEEc
Confidence 10 00012234556899999 888863 999999 899999887653 5666643 43 99
Q ss_pred cccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhcchHHHHHHHHHHhcCeeecE
Q psy14342 202 ALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEALDLVPLVTNAVLEEHHLIVGV 276 (316)
Q Consensus 202 R~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~ 276 (316)
|.||+||++|++|+|.|||++|.+ ||+|.+|+|++.. +.++++++.. ...+.+++.+.+++.+. .+..| ..
T Consensus 396 R~dd~ik~~G~~v~p~eiE~~l~~-~p~V~~~~vv~~~~~~~g~~~~a~v~~~-~~~~~~~l~~~l~~~L~-~~~~P-~~ 471 (501)
T 3ipl_A 396 RRKDLIISGGENIYPYQIETVAKQ-FPGISDAVCVGHPDDTWGQVPKLYFVSE-SDISKAQLIAYLSKHLA-KYKVP-KH 471 (501)
T ss_dssp ECCCCEECSSCEECHHHHHHHHTT-STTEEEEEEEEEEETTTEEEEEEEEEES-SCCCHHHHHHHHHHHSC-GGGSC-SE
T ss_pred cccceEEECCEEECHHHHHHHHHh-CCCccEEEEEEEecccCCceEEEEEEeC-CCCCHHHHHHHHHhhCc-cccCC-CE
Confidence 999999999999999999999999 9999999999883 2455555543 33455678888887776 45454 45
Q ss_pred EEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 277 AVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 277 ~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
+.+++ +||+|++||++|++|++....
T Consensus 472 i~~v~--~lP~t~~GKi~R~~l~~~~~~ 497 (501)
T 3ipl_A 472 FEKVD--TLPYTSTGKLQRNKLYREGHH 497 (501)
T ss_dssp EEECS--SCC------------------
T ss_pred EEEec--ccCCCCCCCEeHHHHhhcccc
Confidence 55655 999999999999999988765
No 10
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=9.9e-45 Score=343.13 Aligned_cols=294 Identities=15% Similarity=0.157 Sum_probs=216.2
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHH----HhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKL----ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPS 76 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~ 76 (316)
|+++|+|||||||.||||++||+++...+..... .+++.++|+++.++|++|.+|+...++.++..|+++++.+..
T Consensus 179 d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~ 258 (536)
T 3ni2_A 179 DVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKF 258 (536)
T ss_dssp SEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSC
T ss_pred CEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCC
Confidence 6899999999999999999999999887665543 345778999999999999999987789999999999998643
Q ss_pred ccccChHHHHHHHhccceeeEEecccchhhHHhhHHhhhh---hcccccccc------------------cccccccchh
Q psy14342 77 EVEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTS---LCRSMKLAC------------------ELYPSRHIAL 135 (316)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~---~~~~~~ls~------------------e~~~~yG~te 135 (316)
++..+++.++++++++++.+|+++..+......... ..+.+-.++ .+++.||+||
T Consensus 259 ----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE 334 (536)
T 3ni2_A 259 ----EIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTE 334 (536)
T ss_dssp ----CHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGG
T ss_pred ----CHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccc
Confidence 688999999999999999999988766543321110 011111122 2778999999
Q ss_pred ccCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc------------eEEecC---CCcccCCCcCCC---------
Q psy14342 136 CLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV---SQYRVRDTFCSC--------- 190 (316)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~---~gY~~~~~~~~~--------- 190 (316)
++..................++.|.+++|++ +++|++ |+++|+ .|||++++.+..
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~ 414 (536)
T 3ni2_A 335 AGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLH 414 (536)
T ss_dssp GSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEE
T ss_pred cchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceE
Confidence 9753221100000001122344566899999 888843 999999 899999766532
Q ss_pred --Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-hhhcch
Q psy14342 191 --NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-SEALDL 258 (316)
Q Consensus 191 --d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-~~~~~l 258 (316)
|.|++++ |. +||.||+||++|+||+|.|||++|.+ ||.|.+|+|++.. +.++++++..+.. .+.+++
T Consensus 415 TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~-~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l 493 (536)
T 3ni2_A 415 TGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIA-HPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEI 493 (536)
T ss_dssp EEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHT-STTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHH
T ss_pred cccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHh-CCCcceEEEEeeecCCCCceeEEEEEecCCCCCCHHHH
Confidence 5555544 43 99999999999999999999999999 9999999999873 3466666655432 234566
Q ss_pred HHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHH
Q psy14342 259 VPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFL 303 (316)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~ 303 (316)
.+.+++.+. .+..| ..+.+++ +||+|++||++|++|++.++
T Consensus 494 ~~~l~~~l~-~~~~p-~~i~~v~--~lP~t~~GKi~R~~L~~~~~ 534 (536)
T 3ni2_A 494 KQYISKQVI-FYKRI-KRVFFIE--AIPKAPSGKILRKNLKEKLA 534 (536)
T ss_dssp HHHHHTTSC-GGGCC-SEEEECS--CCCBCTTSCBCHHHHHTC--
T ss_pred HHHHHHhcc-CCccc-cEEEEEe--cCCCCCCCCeeHHHHHHHhc
Confidence 666666655 34444 3556655 89999999999999998775
No 11
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=4.4e-44 Score=339.50 Aligned_cols=290 Identities=14% Similarity=0.166 Sum_probs=218.8
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHH---hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSE 77 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~ 77 (316)
|+++|+|||||||.||||++||+++...+...... +++.++|+++.++|++|++|+...++.++ .|+++++.+..
T Consensus 193 d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~- 270 (548)
T 2d1s_A 193 QVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKF- 270 (548)
T ss_dssp CEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCC-
T ss_pred CEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCC-
Confidence 57999999999999999999999999887776665 67888999999999999999887667777 99999987632
Q ss_pred cccChHHHHHHHhccceeeEEecccchhhHHhhHHhhh---hhcccccccc------------------cccccccchhc
Q psy14342 78 VEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT---SLCRSMKLAC------------------ELYPSRHIALC 136 (316)
Q Consensus 78 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~---~~~~~~~ls~------------------e~~~~yG~te~ 136 (316)
+|..+++.++++++|+++.+|+++..+........ ...+.+-.++ .+++.||+||+
T Consensus 271 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~ 347 (548)
T 2d1s_A 271 ---DEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTET 347 (548)
T ss_dssp ---CHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGG
T ss_pred ---CHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccc
Confidence 68999999999999999999998876654322110 0011111222 27789999999
Q ss_pred cCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc------------eEEecC---CCcccCCCcCC-----------
Q psy14342 137 LDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV---SQYRVRDTFCS----------- 189 (316)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~---~gY~~~~~~~~----------- 189 (316)
+........ .....++.|.++||++ +++|++ |+++|+ .|||++++.+.
T Consensus 348 ~~~~~~~~~-----~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~T 422 (548)
T 2d1s_A 348 TSAIIITPE-----GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHT 422 (548)
T ss_dssp SSEEEECCT-----TCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEE
T ss_pred cceeeecCc-----ccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEc
Confidence 753322111 1112335566899999 888831 999999 89999876542
Q ss_pred CCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-hhhcchH
Q psy14342 190 CNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-SEALDLV 259 (316)
Q Consensus 190 ~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-~~~~~l~ 259 (316)
+|.|++++ |. +||.||+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.+++++++.+.. .+.+++.
T Consensus 423 GDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~-~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~ 501 (548)
T 2d1s_A 423 GDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQ-HPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVM 501 (548)
T ss_dssp EEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHT-STTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHH
T ss_pred cCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHh-CCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCCHHHHH
Confidence 25566654 43 99999999999999999999999999 9999999999983 3566777665432 3345677
Q ss_pred HHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 260 PLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 260 ~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
+++++.+. .+..+...+.+++ +||+|++||++|++|++.+.+
T Consensus 502 ~~~~~~l~-~~~~p~~~i~~v~--~lP~t~~GKi~r~~L~~~~~~ 543 (548)
T 2d1s_A 502 DYVASQVS-NAKRLRGGVRFVD--EVPKGLTGKIDGRAIREILKK 543 (548)
T ss_dssp HHHHTTSC-GGGSCTTCEEECS--SCCBCTTSCBCHHHHHHHHHS
T ss_pred HHHHHhcc-ccccccccEEEcc--CCCCCCcchhHHHHHHHHHhh
Confidence 77766665 3444422566665 899999999999999999875
No 12
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=4.4e-44 Score=339.61 Aligned_cols=292 Identities=14% Similarity=0.163 Sum_probs=189.6
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+|+|+|||||||.||||+++|+++...+......+++.++|+++.++|++|.+++.. ++.++..|+++++.+..
T Consensus 181 d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~---- 255 (549)
T 3g7s_A 181 DVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGL-VNLMVTVGNEYVVMGMF---- 255 (549)
T ss_dssp SEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHH-HTTHHHHCCEEEEESSC----
T ss_pred CEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHH-HHHHHhcCceEEEcCCC----
Confidence 5799999999999999999999999999999889999999999999999999999887 88899999999998632
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhh--h---hcccccccc------------------------cccccc
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT--S---LCRSMKLAC------------------------ELYPSR 131 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~--~---~~~~~~ls~------------------------e~~~~y 131 (316)
++..+++.++++++|+++.+|+++..+........ . ..+.+..++ .+++.|
T Consensus 256 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y 335 (549)
T 3g7s_A 256 NQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIW 335 (549)
T ss_dssp CHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred CHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceE
Confidence 68899999999999999999998876655443211 0 011111111 144579
Q ss_pred cchhccCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc------------eEEecC---CCcccCCCcCCC-----
Q psy14342 132 HIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV---SQYRVRDTFCSC----- 190 (316)
Q Consensus 132 G~te~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~---~gY~~~~~~~~~----- 190 (316)
|+||++.......+. .....++.|.|++|++ +++|++ |+++|+ .|||++++.+..
T Consensus 336 G~TE~~~~~~~~~~~----~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~ 411 (549)
T 3g7s_A 336 GMTEACPMVTTNPPL----RLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYD 411 (549)
T ss_dssp ECGGGSSEEEECCGG----GGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEEC
T ss_pred eccccchhhhcCCcc----ccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhcc
Confidence 999997543322210 1112335566899999 888832 999999 899999877643
Q ss_pred ----------Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCC
Q psy14342 191 ----------NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGN 251 (316)
Q Consensus 191 ----------d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~ 251 (316)
|.|++++ |. +||.||+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.+++++++.+.
T Consensus 412 ~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~-~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~ 490 (549)
T 3g7s_A 412 EKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMK-HEAVMDVAVIGKPDEEAGEVPKAFIVLKPE 490 (549)
T ss_dssp TTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTT-STTEEEEEEECCCC------CEEEEEECST
T ss_pred CCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHh-CCCeeeEEEEeeEccccCceEEEEEEECCC
Confidence 4444433 33 99999999999999999999999999 9999999999873 356777766654
Q ss_pred ---chhhcchHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcCC
Q psy14342 252 ---ESEALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQ 306 (316)
Q Consensus 252 ---~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~~ 306 (316)
..+.+++.+++++.+. .+..| ..+.+++ +||+|++||++|++|++.+.+..
T Consensus 491 ~~~~~~~~~l~~~l~~~L~-~~~~P-~~i~~v~--~lP~t~~GKi~R~~L~~~~~~~~ 544 (549)
T 3g7s_A 491 YRGKVDEEDIIEWVRERIS-GYKRV-REVEFVE--ELPRTASGKLLRRLLREKEAEGH 544 (549)
T ss_dssp TTTSCCHHHHHHHHHTTCC-------CCCCEEE--ECC--------------------
T ss_pred ccCcCCHHHHHHHHHHhcc-Ccccc-eEEEEec--cCCCCCCcCEeHHHHHHHhhccc
Confidence 2234566666666665 34444 3566665 89999999999999999887643
No 13
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=1e-43 Score=343.53 Aligned_cols=299 Identities=15% Similarity=0.145 Sum_probs=218.1
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHH-HHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLC-RSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~-~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 79 (316)
|++||+|||||||.||||+++|+++...+ ......+++.++|+++...|+.|+.|+.+.++.++..|+++++.+.....
T Consensus 263 d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~ 342 (663)
T 1ry2_A 263 DPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAY 342 (663)
T ss_dssp SCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTS
T ss_pred CceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCC
Confidence 68999999999999999999999987665 34566789999999999999999999866689999999999998765444
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHHhh-h----hhcccccccc--------------------cccccccch
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAV-T----SLCRSMKLAC--------------------ELYPSRHIA 134 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~-~----~~~~~~~ls~--------------------e~~~~yG~t 134 (316)
.+|..+++.++++++|+++++|+++..+....... . ...+.+-..+ .+.+.||+|
T Consensus 343 ~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~T 422 (663)
T 1ry2_A 343 PNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQT 422 (663)
T ss_dssp SCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCT
T ss_pred CCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCc
Confidence 57889999999999999999999887665432210 0 0011111111 267789999
Q ss_pred hccCCCCCCCc-eEEEEeeeccCcccccCCCce-EEecC---------c----eEEecC-----CCcccCCCcCC-----
Q psy14342 135 LCLDPYCGLGF-ALWVLSSVYSGHHSILIPPSE-VEVNP---------A----LWLSAV-----SQYRVRDTFCS----- 189 (316)
Q Consensus 135 e~~~~~~~~~~-~~~~~~~~~~g~~~~~~~g~~-~i~d~---------~----l~v~~~-----~gY~~~~~~~~----- 189 (316)
|++.......+ .. .....|+.+.|++|++ +++|+ . |+++|+ .|||++++.+.
T Consensus 423 E~~~~~~~~~~~~~---~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~ 499 (663)
T 1ry2_A 423 ESGSHLVTPLAGGV---TPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLN 499 (663)
T ss_dssp TTCSCSEECCTTTC---CCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTS
T ss_pred cccCeeeccCCCCC---cccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhc
Confidence 99754332221 00 1123345566899999 88886 1 899993 89999876431
Q ss_pred --------CCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc
Q psy14342 190 --------CNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE 252 (316)
Q Consensus 190 --------~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~ 252 (316)
+|.|++++ |. +||.||+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.+++++++.+..
T Consensus 500 ~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~-~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~ 578 (663)
T 1ry2_A 500 PYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIE-DPIVAECAVVGFNDDLTGQAVAAFVVLKNKS 578 (663)
T ss_dssp SSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHS-STTEEEEEEECCCCCTTSCCCEEEEEEC---
T ss_pred CCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHh-CCCcceEEEEEEecCCCCeEEEEEEEEcCCC
Confidence 15555553 43 99999999999999999999999999 9999999999973 4678877776543
Q ss_pred h---h-hc---chHHHHHHHHHHhcCe--eecEEEEEcCCCcccCCCchhhHHHHHHHHHcC
Q psy14342 253 S---E-AL---DLVPLVTNAVLEEHHL--IVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 305 (316)
Q Consensus 253 ~---~-~~---~l~~~~~~~l~~~~~~--~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~ 305 (316)
. . .+ ++.+++++.+.+.... .+..+.+++ .||+|++||++|++|++.+...
T Consensus 579 ~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~--~lP~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 579 SWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVD--DLPKTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp ---------CCSHHHHHHHHHHHHTCTTTSCSEEEECS--CCCBCTTSCBCHHHHHHSCC--
T ss_pred ccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcC--CCCCCCccCchHHHHHHHHcCC
Confidence 2 1 11 4455566555544332 224555555 8999999999999999987653
No 14
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=9.5e-44 Score=339.10 Aligned_cols=293 Identities=13% Similarity=0.091 Sum_probs=202.1
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||+|.++|.++.........++++.++|+++...|+.|..+.+..++.++..|+++++.++..+
T Consensus 226 d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~-- 303 (580)
T 3etc_A 226 DICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRF-- 303 (580)
T ss_dssp SEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSC--
T ss_pred CcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCC--
Confidence 689999999999999999999999888777766777888999999999999999888778899999999998754433
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhh-h-hhcccccccc-----------------cccccccchhccCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAV-T-SLCRSMKLAC-----------------ELYPSRHIALCLDPYC 141 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~-~-~~~~~~~ls~-----------------e~~~~yG~te~~~~~~ 141 (316)
+|..+++.++++++|+++++|+++..+....... . ...+.+-.++ .+++.||+||++....
T Consensus 304 ~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~ 383 (580)
T 3etc_A 304 EAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIA 383 (580)
T ss_dssp CHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC---CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEE
T ss_pred CHHHHHHHHHHHCCeEEEccHHHHHHHHhcccccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceee
Confidence 7889999999999999999999887654432110 0 0011111222 2888999999965433
Q ss_pred CCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEec-----C---CCcccCCCcCCC----------C
Q psy14342 142 GLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSA-----V---SQYRVRDTFCSC----------N 191 (316)
Q Consensus 142 ~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~-----~---~gY~~~~~~~~~----------d 191 (316)
..+. .....++.|.|+||++ +++|++ |+++| + .|||++++.+.. |
T Consensus 384 ~~~~-----~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGD 458 (580)
T 3etc_A 384 TFPW-----MEPKPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGD 458 (580)
T ss_dssp CCTT-----SCCCTTCCBEECTTCEEEEECTTSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEE
T ss_pred cCCC-----CCCCCCccccCCCCCEEEEECCCCCCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCc
Confidence 2221 1123345667899999 898864 99986 4 799999876642 6
Q ss_pred ceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhcchHHHH
Q psy14342 192 GALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEALDLVPLV 262 (316)
Q Consensus 192 ~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~~l~~~~ 262 (316)
.|++++ |. +||.||+||++|+||+|.|||++|.+ ||.|.+|+|++.. +.+.+++++.+.....+++.+++
T Consensus 459 lg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~-~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l 537 (580)
T 3etc_A 459 MAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQ-HPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNEL 537 (580)
T ss_dssp EEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTT-STTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHH
T ss_pred EEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHh-CCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHH
Confidence 666654 43 99999999999999999999999999 9999999999883 35667777665433333344444
Q ss_pred HHHHHH---hcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 263 TNAVLE---EHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 263 ~~~l~~---~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
++.+.+ .+..| ..+.+++ +||+|++||++|++|++.+.+
T Consensus 538 ~~~l~~~l~~~~~P-~~i~~v~--~lP~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 538 QDHVKNVTAPYKYP-RIIEFVP--ELPKTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp HHHHHHHSCGGGCC-SEEEEEC--C--------------------
T ss_pred HHHHHhhCCCccCC-eEEEEeC--CCCCCCCcCCcHHHHHhHhhc
Confidence 444443 33343 4667766 899999999999999998764
No 15
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=2.3e-44 Score=341.18 Aligned_cols=292 Identities=14% Similarity=0.119 Sum_probs=144.1
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhH-HHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFAL-WVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~-~~~~~l~~G~~~v~~~~~~~~ 79 (316)
|+++|+|||||||.||||+++|+++...+......+++.++|+++.++|++|.+++.. .++.++..|+++++.+..
T Consensus 192 d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~--- 268 (544)
T 3o83_A 192 EVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNP--- 268 (544)
T ss_dssp SEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSC---
T ss_pred ceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCCC---
Confidence 5899999999999999999999999999999999999999999999999999988875 478899999999997643
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHHhhhh---hcccccccc-----------------cccccccchhccCC
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTS---LCRSMKLAC-----------------ELYPSRHIALCLDP 139 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~---~~~~~~ls~-----------------e~~~~yG~te~~~~ 139 (316)
+|..+++.++++++|+++.+|+++..+......... ..+.+..++ .+++.||+||++..
T Consensus 269 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~ 347 (544)
T 3o83_A 269 -EPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVN 347 (544)
T ss_dssp -CHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEE
T ss_pred -CHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccce
Confidence 688999999999999999999988766544322111 111122222 27889999998643
Q ss_pred CCCCCceEEEEeeeccCcccccC-CCce-EEecCc-----------eEEecC---CCcccCCCcCCC-----------Cc
Q psy14342 140 YCGLGFALWVLSSVYSGHHSILI-PPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCSC-----------NG 192 (316)
Q Consensus 140 ~~~~~~~~~~~~~~~~g~~~~~~-~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~~-----------d~ 192 (316)
....... .....++.|.|+ ++.+ +++|++ |+++|+ .|||++++.+.. |.
T Consensus 348 ~~~~~~~----~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl 423 (544)
T 3o83_A 348 YTRLDDS----DEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDL 423 (544)
T ss_dssp ECCTTSC----HHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEE
T ss_pred eecCCCc----hhhccCCCceecCCCcEEEEECCCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCE
Confidence 2221110 001112334465 7888 888753 999999 899999765432 56
Q ss_pred eeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhcchHHHHH
Q psy14342 193 ALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEALDLVPLVT 263 (316)
Q Consensus 193 g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~ 263 (316)
|++++ |. +||.||+||++|+||+|.|||++|.+ ||.|.+|+|++.. +.++++++......+.+++.+.++
T Consensus 424 g~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~-~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~l~~~~~ 502 (544)
T 3o83_A 424 VQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILL-HPEVMHAALVAIVDEQFGEKSCAFIVSRNPELKAVVLRRHLM 502 (544)
T ss_dssp EEECTTSCEEEEEEEC----------------------------------------------------------------
T ss_pred EEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHh-CCCccEEEEEeccCCCCCceEEEEEEeCCCCCCHHHHHHHHH
Confidence 66653 43 99999999999999999999999999 9999999999873 456666666554444566777777
Q ss_pred H-HHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcC
Q psy14342 264 N-AVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 305 (316)
Q Consensus 264 ~-~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~ 305 (316)
+ .+. .+..| ..+.+++ +||+|++||++|++|++.+.++
T Consensus 503 ~~~l~-~~~~P-~~i~~v~--~lP~t~~GKi~r~~L~~~~~~~ 541 (544)
T 3o83_A 503 ELGIA-QYKLP-DQIKLIE--SLPLTAVGKVDKKQLRSILNTS 541 (544)
T ss_dssp -------------------------------------------
T ss_pred hCCCC-cccCC-cEEEEec--cCCCCCCCCCcHHHHHHHHhhc
Confidence 6 455 55554 4555555 8999999999999999998764
No 16
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=1.4e-43 Score=332.81 Aligned_cols=286 Identities=16% Similarity=0.126 Sum_probs=215.5
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcC--CCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACEL--YPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEV 78 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~--~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~ 78 (316)
|+++|+|||||||.||||++||+++...+......+++ .++|+++.++|++|.+|+...++.++..|+++++.+..
T Consensus 154 ~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~-- 231 (504)
T 1t5h_X 154 QPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEF-- 231 (504)
T ss_dssp SEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSC--
T ss_pred CeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCC--
Confidence 58999999999999999999999999888888888888 78899999999999999866688999999999998642
Q ss_pred ccChHHHHHHHhccceeeEEecccchhhHHhhHHh-hh----hhcccccccc-----------------cccccccchhc
Q psy14342 79 EVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAA-VT----SLCRSMKLAC-----------------ELYPSRHIALC 136 (316)
Q Consensus 79 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~-~~----~~~~~~~ls~-----------------e~~~~yG~te~ 136 (316)
+|..+++.++++++|+++.+|+++..+...... .. ...+.+-.++ .+++.||+||+
T Consensus 232 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~ 309 (504)
T 1t5h_X 232 --RPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEA 309 (504)
T ss_dssp --CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTT
T ss_pred --CHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccc
Confidence 688999999999999999999988766554311 10 0111122222 27789999998
Q ss_pred cCCCCCCCceEEEEeeeccCcccccCCCce-EEecC--------------ceEEe-cC---CCcccCCCcCC--------
Q psy14342 137 LDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNP--------------ALWLS-AV---SQYRVRDTFCS-------- 189 (316)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~--------------~l~v~-~~---~gY~~~~~~~~-------- 189 (316)
+.... ......++.+.+.++.+ +++|+ +|+++ |+ .|||++++.+.
T Consensus 310 ~~~~~--------~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~ 381 (504)
T 1t5h_X 310 MNSLY--------MRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWY 381 (504)
T ss_dssp EEEEE--------EESCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEE
T ss_pred ccccc--------ccCCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCcc
Confidence 31110 01122334455788888 77753 19999 77 89999987653
Q ss_pred --CCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-hhhcc
Q psy14342 190 --CNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-SEALD 257 (316)
Q Consensus 190 --~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-~~~~~ 257 (316)
+|.|++++ |. +||.||+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.+++++++.+.. .+.++
T Consensus 382 ~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~-~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~ 460 (504)
T 1t5h_X 382 RTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGT-APGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADA 460 (504)
T ss_dssp EEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTT-STTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCHHH
T ss_pred ccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHh-CCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCHHH
Confidence 26666654 43 99999999999999999999999999 9999999999983 3577777776542 23456
Q ss_pred hHHHHHH-HHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHH
Q psy14342 258 LVPLVTN-AVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFL 303 (316)
Q Consensus 258 l~~~~~~-~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~ 303 (316)
+.+++++ .+. .+..| ..+.+++ +||+|++||++|++|++.|.
T Consensus 461 l~~~~~~~~L~-~~~~P-~~i~~v~--~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 461 LDTFCRSSELA-DFKRP-KRYFILD--QLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp HHHHHHTSSCC-GGGSC-SEEEECS--CCCBCTTSCBCHHHHHHHHC
T ss_pred HHHHHhhccCc-ccccc-eEEEEhh--hCCCCCCCCEeHHHHHHHhc
Confidence 6666665 555 44444 4666665 89999999999999998874
No 17
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=2.7e-43 Score=330.96 Aligned_cols=286 Identities=16% Similarity=0.096 Sum_probs=204.0
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||||+++|+++...+......+++.++|+++.++|++|..|++..++.++..|+++++.+..
T Consensus 156 d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~---- 231 (505)
T 3nyq_A 156 DPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRF---- 231 (505)
T ss_dssp SEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSC----
T ss_pred CeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCC----
Confidence 6899999999999999999999999999999899999999999999999999999987789999999999987543
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHh----hh--hhcccccccc-----------------cccccccchhcc
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAA----VT--SLCRSMKLAC-----------------ELYPSRHIALCL 137 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~----~~--~~~~~~~ls~-----------------e~~~~yG~te~~ 137 (316)
++..+++.+ ++++++++.+|+++..+...... .. ...+.+-.++ .+++.||+||++
T Consensus 232 ~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~ 310 (505)
T 3nyq_A 232 STEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETL 310 (505)
T ss_dssp CHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTE
T ss_pred ChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcc
Confidence 577888888 88999999999988765542111 00 0011111122 288899999986
Q ss_pred CCCCCCCceEEEEeeeccCcccccCCCce-EEecC--------------ceEEecC---CCcccCCCcCCC---------
Q psy14342 138 DPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNP--------------ALWLSAV---SQYRVRDTFCSC--------- 190 (316)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~--------------~l~v~~~---~gY~~~~~~~~~--------- 190 (316)
........ .....++.|.|++|++ +++|+ +|+++|+ .|||++++.+..
T Consensus 311 ~~~~~~~~-----~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~ 385 (505)
T 3nyq_A 311 MNTSVRAD-----GEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFR 385 (505)
T ss_dssp EEEECCTT-----SCCCTTCCCEECTTCEEEEC-----CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEE
T ss_pred cccccCCC-----CCCCCCCcccCCCCCEEEEECCCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCc
Confidence 43222211 1112234556899999 88763 1999999 899998765432
Q ss_pred --Cceeeec-Cc---CCcc-cceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCC--chhhc
Q psy14342 191 --NGALYQG-AE---RLAL-DETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGN--ESEAL 256 (316)
Q Consensus 191 --d~g~~~~-g~---~GR~-dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~--~~~~~ 256 (316)
|.|++++ |. +||. ||+||++|+||+|.|||++|.+ ||.|.+|+|++.. +.+++++++... ..+.+
T Consensus 386 TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~-~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~ 464 (505)
T 3nyq_A 386 TGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLE-HPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALG 464 (505)
T ss_dssp EEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTT-STTEEEEEEEEEEETTTEEEEEEEEEESSTTSCCCHH
T ss_pred cCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHH-CcCccEEEEEeeECCCCCcEEEEEEEECCCCCCCCHH
Confidence 5565653 43 9997 5999999999999999999999 9999999999883 367777776642 22335
Q ss_pred chHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHH
Q psy14342 257 DLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDG 301 (316)
Q Consensus 257 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~ 301 (316)
++.+++++.+. .+..| ..+.+++ +||+|++||++|++|++.
T Consensus 465 ~l~~~l~~~L~-~~~~P-~~i~~v~--~lP~t~~GKi~r~~L~~~ 505 (505)
T 3nyq_A 465 TLADHVAARLA-PHKRP-RVVRYLD--AVPRNDMGKIMKRALNRD 505 (505)
T ss_dssp HHHHHHHHHTC-GGGSC-SEEEECS--CCCC--------------
T ss_pred HHHHHHHhhCC-CCcCc-cEEEEEC--CCCCCCCcCeeHHhhccC
Confidence 67777777776 44444 4566655 999999999999999863
No 18
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=2.8e-44 Score=341.10 Aligned_cols=291 Identities=17% Similarity=0.205 Sum_probs=134.8
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHH---hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSE 77 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~ 77 (316)
|+++|+|||||||.||||++||+++...+...... +++.++|+++.++|++|++|++. ++.++..|+++++.+..
T Consensus 191 d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~~- 268 (550)
T 3rix_A 191 TIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFT-TLGYLICGFRVVLMYRF- 268 (550)
T ss_dssp SEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEECSSC-
T ss_pred CEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHH-HHHHHHcCCEEEEeCCC-
Confidence 57999999999999999999999998877665544 46778999999999999999876 78899999999997643
Q ss_pred cccChHHHHHHHhccceeeEEecccchhhHHhhHHhhh---hhcccccccc------------------cccccccchhc
Q psy14342 78 VEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT---SLCRSMKLAC------------------ELYPSRHIALC 136 (316)
Q Consensus 78 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~---~~~~~~~ls~------------------e~~~~yG~te~ 136 (316)
+|..+++.++++++|+++.+|+++..+........ ...+.+-.++ .+++.||+||+
T Consensus 269 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~ 345 (550)
T 3rix_A 269 ---EEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTET 345 (550)
T ss_dssp ---CHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGG
T ss_pred ---CHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCcc
Confidence 68899999999999999999998876654332211 0111111222 16789999999
Q ss_pred cCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc------------eEEecC---CCcccCCCcCCC----------
Q psy14342 137 LDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV---SQYRVRDTFCSC---------- 190 (316)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~---~gY~~~~~~~~~---------- 190 (316)
+........ .....++.|.++|+++ +++|++ |+++|+ .|||++++.+..
T Consensus 346 ~~~~~~~~~-----~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~T 420 (550)
T 3rix_A 346 TSAILITPE-----GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHS 420 (550)
T ss_dssp SSEEEECCT-----TCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEE
T ss_pred ccceecCCC-----CCCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeec
Confidence 754332221 1112234556899999 888842 999999 899999765532
Q ss_pred -Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-hhhcchH
Q psy14342 191 -NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-SEALDLV 259 (316)
Q Consensus 191 -d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-~~~~~l~ 259 (316)
|.|++++ |. +||.||+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.++++++..+.. .+.+++.
T Consensus 421 GDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~-~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~ 499 (550)
T 3rix_A 421 GDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQ-HPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIV 499 (550)
T ss_dssp EEEEEECTTCCEEEC-----------------------------------------------------------------
T ss_pred CcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHh-CCCcceEEEEEeecCCCCceEEEEEEecCCCCCCHHHHH
Confidence 5555544 43 99999999999999999999999999 9999999999883 3556666555432 3446788
Q ss_pred HHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcC
Q psy14342 260 PLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 305 (316)
Q Consensus 260 ~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~ 305 (316)
+++++++.. ++.++..+.+++ +||+|++||++|++|++.+.+.
T Consensus 500 ~~~~~~l~~-~~~~~~~i~~v~--~lP~t~~GKi~r~~L~~~~~~~ 542 (550)
T 3rix_A 500 DYVASQVTT-AKKLRGGVVFVD--EVPKGLTGKLDARKIREILIKA 542 (550)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHhccc-ccccCCceEEEe--ecCCCCCcceeHHHHHHHHHhh
Confidence 888888773 434333455655 8999999999999999998763
No 19
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=3.6e-43 Score=335.11 Aligned_cols=302 Identities=15% Similarity=0.176 Sum_probs=225.3
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHH-hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLA-CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~-~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 79 (316)
|+++|+|||||||.||||+++|+++..++...... +++.++|+++.++|++|++|++..++.++..|+++++..+..+.
T Consensus 177 d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~ 256 (576)
T 3gqw_A 177 DIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFA 256 (576)
T ss_dssp SEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHH
T ss_pred CeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhh
Confidence 68999999999999999999999999888776654 78999999999999999999988788899999999988765555
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHHh--hhh----hcccccccc-----------------------ccccc
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAA--VTS----LCRSMKLAC-----------------------ELYPS 130 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~--~~~----~~~~~~ls~-----------------------e~~~~ 130 (316)
.+|..|++.++++++|+++.+|..+..+...... ... ..+.+-.++ .+++.
T Consensus 257 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (576)
T 3gqw_A 257 MRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPC 336 (576)
T ss_dssp HCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEE
T ss_pred hCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCccccccc
Confidence 6788999999999999998888877544322111 000 001111111 25668
Q ss_pred ccchhccCCCCCCCc----eEEEEe-------------------eeccCcccccCCCce-EEecCc-----------eEE
Q psy14342 131 RHIALCLDPYCGLGF----ALWVLS-------------------SVYSGHHSILIPPSE-VEVNPA-----------LWL 175 (316)
Q Consensus 131 yG~te~~~~~~~~~~----~~~~~~-------------------~~~~g~~~~~~~g~~-~i~d~~-----------l~v 175 (316)
||+||++........ ...... ....++.|.++||.+ +++|++ |++
T Consensus 337 YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~v 416 (576)
T 3gqw_A 337 YGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRNEAGMPVAERVVGHICI 416 (576)
T ss_dssp EECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEECTTSCBCCTTBCEEEEE
T ss_pred CCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEECCCCCCCCCCCeEEEEE
Confidence 999999754322111 000000 000013445899999 888753 999
Q ss_pred ecC---CCcccCCCcC----------CCCceeeecCc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEee-
Q psy14342 176 SAV---SQYRVRDTFC----------SCNGALYQGAE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW- 238 (316)
Q Consensus 176 ~~~---~gY~~~~~~~----------~~d~g~~~~g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~- 238 (316)
+|+ .|||++++.+ ++|.|++++|. +||.||+||++|+||+|.|||++|.+ ||.|.+++|++.
T Consensus 417 ~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~-~p~V~~~~vv~~~ 495 (576)
T 3gqw_A 417 SGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYLLDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQ-EPEIHSGDAIAFV 495 (576)
T ss_dssp ESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEEETTEEEEEEETTTCEEETTEEECHHHHHHHHTT-SSSCCTTSEEEEE
T ss_pred eCccccccccCCccccccccCCCeeeccceEEEECCEEEEEecCcceEEECCEEECHHHHHHHHHh-CcccccccEEEEE
Confidence 999 9999987543 23777776664 99999999999999999999999999 999999777766
Q ss_pred --CCcEEEEEEecCCc-hhhcchHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 239 --TNLLVVVVELDGNE-SEALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 239 --~~~~~~~v~~~~~~-~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
++...+++...... ...+++.+.+++.+...+..+ ..+.+++.+.||+|++||++|++|++.|.+
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p-~~i~~v~~~~lP~t~~GKi~r~~l~~~~~~ 563 (576)
T 3gqw_A 496 TAQEKIILQIQCRISDEERRGQLIHALAARIQSEFGVT-AAIDLLPPHSIPRTSSGKPARAEAKKRYQK 563 (576)
T ss_dssp CTTSCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHSCC-EEEEEECSSCSCBCTTSSBCHHHHHHHHHH
T ss_pred cCCccEEEEEEEecCchhHHHHHHHHHHHHHHHHhCCc-eeEEEECCCCcCcCCCccchHHHHHHHHHH
Confidence 23455555444332 234678888888886667666 467788878999999999999999999986
No 20
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=7.9e-44 Score=337.27 Aligned_cols=295 Identities=16% Similarity=0.158 Sum_probs=185.5
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHH--HHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRS--MKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEV 78 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~--~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~ 78 (316)
|+++|+|||||||.||||++||+++...... ....+++.++|+++.++|++|.+++.. ++.++..|+++++.++.
T Consensus 177 ~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~l~~G~~~v~~~~~-- 253 (541)
T 1v25_A 177 AACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCL-PYAATLVGAKQVLPGPR-- 253 (541)
T ss_dssp SEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTH-HHHHHHHTCEEEECTTC--
T ss_pred CcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHH-HHHHHhcCceEEeeCCC--
Confidence 5799999999999999999999999876554 224567888999999999999999865 78899999999987542
Q ss_pred ccChHHHHHHHhccceeeEEecccchhhHHhhHHhhhh---hcccccccc----------------cccccccchhccCC
Q psy14342 79 EVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTS---LCRSMKLAC----------------ELYPSRHIALCLDP 139 (316)
Q Consensus 79 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~---~~~~~~ls~----------------e~~~~yG~te~~~~ 139 (316)
.+|..+++.++++++|+++.+|+++..+......... ..+.+..++ .+++.||+||++..
T Consensus 254 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~~~~~YG~TE~~~~ 332 (541)
T 1v25_A 254 -LDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPV 332 (541)
T ss_dssp -CSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGSSE
T ss_pred -CCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHHHHhCCceeecccccccccc
Confidence 2789999999999999999999988766554332110 111111222 28889999999753
Q ss_pred CCCCCce--E-EE---EeeeccCcccccCCCce-EEecCc-------------eEEecC---CCcccCCCcCCC------
Q psy14342 140 YCGLGFA--L-WV---LSSVYSGHHSILIPPSE-VEVNPA-------------LWLSAV---SQYRVRDTFCSC------ 190 (316)
Q Consensus 140 ~~~~~~~--~-~~---~~~~~~g~~~~~~~g~~-~i~d~~-------------l~v~~~---~gY~~~~~~~~~------ 190 (316)
.....+. . .. ......++.|.|+||++ +++|++ |+++|+ .|||++++.+..
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g 412 (541)
T 1v25_A 333 VVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDG 412 (541)
T ss_dssp EEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTS
T ss_pred eecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCC
Confidence 3221110 0 00 00011235566899999 888741 999999 899999766532
Q ss_pred -----Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhc
Q psy14342 191 -----NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEAL 256 (316)
Q Consensus 191 -----d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~ 256 (316)
|.|++++ |. +||.||+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.+++++++.....+.+
T Consensus 413 ~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~-~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~ 491 (541)
T 1v25_A 413 FFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMG-HPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPE 491 (541)
T ss_dssp CEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC-----------CEEEEECSSSSEEEEECC----------
T ss_pred CeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHh-CCCceEEEEEEecCCCcCceEEEEEEECCCCCCHH
Confidence 5555543 43 99999999999999999999999999 9999999999883 35666665543233445
Q ss_pred chHHHHHH-HHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 257 DLVPLVTN-AVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 257 ~l~~~~~~-~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
++.+++++ .+. .+..| ..+.+++ +||+|++||++|++|++.|.+
T Consensus 492 ~l~~~~~~~~L~-~~~~P-~~i~~v~--~lP~t~~GKi~r~~L~~~~~~ 536 (541)
T 1v25_A 492 ELNEHLLKAGFA-KWQLP-DAYVFAE--EIPRTSAGKFLKRALREQYKN 536 (541)
T ss_dssp ---------CCC-TTTSC-SBC----------------CCTTHHHHSTT
T ss_pred HHHHHHHhccCc-cccCC-cEEEEeC--CCCCCCccCeeHHHHHHHHHH
Confidence 67777766 455 45554 4566665 899999999999999998765
No 21
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1.5e-42 Score=332.94 Aligned_cols=289 Identities=15% Similarity=0.125 Sum_probs=209.0
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+|||+|||||||.||||+++|+++...+.. ...+++.++|+++.+.|++|+.+++. ++.++..|+++++.+... .
T Consensus 165 d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~v~~~~~~--~ 240 (620)
T 4dg8_A 165 QIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLE-IWGALLNGGCCVLNDLGP--L 240 (620)
T ss_dssp SEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHH-HHHHHTTTCEEEECCSSS--C
T ss_pred CeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHH-HHHHHhcCCEEEeCcccc--C
Confidence 6899999999999999999999999776554 45678889999999999999999887 899999999999874332 3
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhhcccccccc------------------cccccccchhccCCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMKLAC------------------ELYPSRHIALCLDPYCG 142 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~------------------e~~~~yG~te~~~~~~~ 142 (316)
+|..+++.++++++++++.+|+++..+...........+.+-.++ .+++.||+||++.....
T Consensus 241 ~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~ 320 (620)
T 4dg8_A 241 DPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCC 320 (620)
T ss_dssp CHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEE
T ss_pred CHHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEE
Confidence 789999999999999999999988766442221111112222222 28889999998753321
Q ss_pred CCceEEEEeeeccCcccccCCCce-EEecCc------------eEEecC---CCcccCCCcCCC----------------
Q psy14342 143 LGFALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV---SQYRVRDTFCSC---------------- 190 (316)
Q Consensus 143 ~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~---~gY~~~~~~~~~---------------- 190 (316)
..... .......++.|.|++|++ +++|++ |+++|+ .|||++++.+..
T Consensus 321 ~~~~~-~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yr 399 (620)
T 4dg8_A 321 HVVTD-DDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYR 399 (620)
T ss_dssp EECCT-GGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEE
T ss_pred Eeccc-cccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEe
Confidence 10000 000011225566899999 888754 999999 999998765432
Q ss_pred --Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeCC----cEEEEEEecCCchhhcchHH
Q psy14342 191 --NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTN----LLVVVVELDGNESEALDLVP 260 (316)
Q Consensus 191 --d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~~----~~~~~v~~~~~~~~~~~l~~ 260 (316)
|.|++++ |. +||.||+||++|+||+|.|||++|.+ ||+|.+|+|++..+ .+++++... .+++.+
T Consensus 400 TGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~-~p~V~~a~Vv~~~~~~~~~lv~~~~~~-----~~~~~~ 473 (620)
T 4dg8_A 400 TGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRR-QPGILDCALLVRERNGVKQLLCAWTGK-----ADASPQ 473 (620)
T ss_dssp EEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHT-STTEEEEEEEEEEETTEEEEEEEEEEC-----TTCCCH
T ss_pred CCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHh-CCCccEEEEEEEeCCCceEEEEEEecC-----hHHHHH
Confidence 4555543 43 99999999999999999999999999 99999999998842 333333322 234556
Q ss_pred HHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 261 LVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 261 ~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
++++.++ .+..| ..+.++ ++||+|++||++|++|++.+.+
T Consensus 474 ~l~~~Lp-~y~~P-~~~~~v--~~lP~t~~GKidR~~L~~~~~~ 513 (620)
T 4dg8_A 474 ALLRQLP-TWQRP-HACVRV--EALPLTAHGKLDRAALLRRLEE 513 (620)
T ss_dssp HHHHHSC-GGGSC-SEEEEC--SSCCCC----CCHHHHHHHTCS
T ss_pred HHHHhCh-hhcCC-cEEEEE--CcCCCCcccCHhHHHHhhcccc
Confidence 6777776 44444 455555 4999999999999999988765
No 22
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=8.4e-43 Score=328.86 Aligned_cols=301 Identities=11% Similarity=0.069 Sum_probs=207.1
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHH--hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLA--CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEV 78 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~--~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~ 78 (316)
|+++|+|||||||.||||++||+++...+...... +++.++++++.+.|++|..++.. ++.++..|+++++.+.. .
T Consensus 146 d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~l~~G~~~~~~~~~-~ 223 (521)
T 3l8c_A 146 DNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMY-WAPTLALGGTLFALPKE-L 223 (521)
T ss_dssp SEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHH-HHHHHHTTCEEEECCGG-G
T ss_pred CcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHH-HHHHHhcCCEEEEcCHH-H
Confidence 68999999999999999999999999877766555 67778899999999999988776 78899999999887543 3
Q ss_pred ccChHHHHHHHhccceeeEEecccchhhHHhhHHhhhh---hcccccccc------------------cccccccchhcc
Q psy14342 79 EVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTS---LCRSMKLAC------------------ELYPSRHIALCL 137 (316)
Q Consensus 79 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~---~~~~~~ls~------------------e~~~~yG~te~~ 137 (316)
..++..+++.+++++++++..+|+++..+......... ..+.+..++ .+++.||+||++
T Consensus 224 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~ 303 (521)
T 3l8c_A 224 VADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEAT 303 (521)
T ss_dssp TTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGS
T ss_pred hhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHh
Confidence 45788999999999999999999987654433221110 011111122 278899999997
Q ss_pred CCCCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCC-------------
Q psy14342 138 DPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCS------------- 189 (316)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~------------- 189 (316)
..................++.|.|+||++ +++|++ |+++|+ .|||++++.+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~ 383 (521)
T 3l8c_A 304 VALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYH 383 (521)
T ss_dssp SCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEE
T ss_pred hhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeee
Confidence 54321110000000011224556899999 888864 999999 99999876542
Q ss_pred -CCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC------CcEEEEEEecCCchhh---
Q psy14342 190 -CNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT------NLLVVVVELDGNESEA--- 255 (316)
Q Consensus 190 -~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~------~~~~~~v~~~~~~~~~--- 255 (316)
+|.|++++ |. .||.||+||++|+||+|.|||++|.+ ||.|.+|+|++.. +.+++++++.+.....
T Consensus 384 TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~-~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~ 462 (521)
T 3l8c_A 384 TGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQ-SPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDR 462 (521)
T ss_dssp EEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHT-STTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSS
T ss_pred CCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHc-CCCcceEEEEEeecCCCCceEEEEEEEecCcccccccc
Confidence 25555544 33 89999999999999999999999999 9999999999762 3567777776543221
Q ss_pred -cchHHHHHHHHHHhcCe--eecEEEEEcCCCcccCCCchhhHHHHHHHHHcCC
Q psy14342 256 -LDLVPLVTNAVLEEHHL--IVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQ 306 (316)
Q Consensus 256 -~~l~~~~~~~l~~~~~~--~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~~ 306 (316)
.++.+.+++.+.+.... .+..+.++ ++||+|++||++|++|++.+.+..
T Consensus 463 ~~~~~~~l~~~l~~~l~~~~~P~~i~~v--~~lP~t~~GKidr~~L~~~~~~~~ 514 (521)
T 3l8c_A 463 ELELTKAIKASVKDHMMSYMMPSKFLYR--DSLPLTPNGKIDIKTLINEVNNRE 514 (521)
T ss_dssp HHHHHHHHHHHSGGGSCGGGSCSEEEEC--SSCCBCTTSSBCHHHHHHHTC---
T ss_pred chhhHHHHHHHHHhhCccccCCeEEEEe--cccCCCCCcCccHHHHhhhhhcCC
Confidence 13455566666554332 22345554 599999999999999999987644
No 23
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=2.9e-42 Score=328.32 Aligned_cols=291 Identities=14% Similarity=0.069 Sum_probs=213.8
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHH--HHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTS--LCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEV 78 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~--~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~ 78 (316)
|+++|+|||||||.||||+++|+ ++. ..... ..+++.++|+++.++|++|+++++..++.++..|+++++.....
T Consensus 207 d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~- 283 (570)
T 3c5e_A 207 EASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPK- 283 (570)
T ss_dssp SEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSS-
T ss_pred CcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCC-
Confidence 68999999999999999999999 444 33333 66788899999999999999998866889999999999986432
Q ss_pred ccChHHHHHHHhccceeeEEecccchhhHHhhHHhh-h-hhcccccccc-----------------cccccccchhccCC
Q psy14342 79 EVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAV-T-SLCRSMKLAC-----------------ELYPSRHIALCLDP 139 (316)
Q Consensus 79 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~-~-~~~~~~~ls~-----------------e~~~~yG~te~~~~ 139 (316)
.+|..+++.++++++|+++.+|+++..+....... . ...+.+-.++ .+++.||+||++..
T Consensus 284 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~ 362 (570)
T 3c5e_A 284 -FDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLT 362 (570)
T ss_dssp -CCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEE
T ss_pred -CCHHHHHHHHHHhCCeEEeccHHHHHHHHhccccccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccc
Confidence 27899999999999999999999887665432110 0 0011111222 27889999998643
Q ss_pred CCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEe-----cC---CCcccCCCcCC----------
Q psy14342 140 YCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLS-----AV---SQYRVRDTFCS---------- 189 (316)
Q Consensus 140 ~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~-----~~---~gY~~~~~~~~---------- 189 (316)
...... .....++.|.+++|++ +++|++ |+++ |+ .|||++++.+.
T Consensus 363 ~~~~~~-----~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~T 437 (570)
T 3c5e_A 363 CMVSKT-----MKIKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLL 437 (570)
T ss_dssp EECCTT-----SCCCTTCCCEECTTCCEEEECTTSCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEE
T ss_pred eecCcc-----cccCCCcccccCCCceEEEECCCCCCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCcccc
Confidence 221111 0122345566899999 888854 9998 77 89999976653
Q ss_pred CCceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc--hhhcch
Q psy14342 190 CNGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE--SEALDL 258 (316)
Q Consensus 190 ~d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~--~~~~~l 258 (316)
+|.|++++ |. +||.||+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.+++++++.+.. .+.+.+
T Consensus 438 GDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~-~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~ 516 (570)
T 3c5e_A 438 GDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALME-HPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQL 516 (570)
T ss_dssp EEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHT-STTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHH
T ss_pred ceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHh-CCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHH
Confidence 26666654 43 99999999999999999999999999 9999999999883 3566777665432 112223
Q ss_pred HHHHHHHHHH---hcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 259 VPLVTNAVLE---EHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 259 ~~~~~~~l~~---~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
.+++++.+.+ .+..| ..+.+++ +||+|++||++|++|++.+.+
T Consensus 517 ~~~l~~~l~~~L~~~~~P-~~i~~v~--~lP~t~~GKi~R~~L~~~~~~ 562 (570)
T 3c5e_A 517 TKELQQHVKSVTAPYKYP-RKIEFVL--NLPKTVTGKIQRAKLRDKEWK 562 (570)
T ss_dssp HHHHHHHHHHHSCGGGSC-SEEEEES--CCCBCTTCCBCHHHHHHHHTC
T ss_pred HHHHHHHHHhhCccccCC-cEEEEec--cCCCCCCcCCcHHHHHHHHHh
Confidence 4444444443 33344 5677776 899999999999999998854
No 24
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=7.5e-43 Score=331.91 Aligned_cols=290 Identities=14% Similarity=0.099 Sum_probs=212.1
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||||++||+++...+......+++.++|+++.++|++|+.+++. ++.++..|+++++.+... ..
T Consensus 183 d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~v~~~~~~-~~ 260 (563)
T 1amu_A 183 DLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWE-MFMALLTGASLYIILKDT-IN 260 (563)
T ss_dssp SEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHH-HHHHHTTTCEEEECCHHH-HT
T ss_pred CeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHH-HHHHHHCCCEEEEcChHh-hc
Confidence 6899999999999999999999999988888888889999999999999999998875 789999999999876432 34
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhhcccccccc---------------cccccccchhccCCCCCCCc
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMKLAC---------------ELYPSRHIALCLDPYCGLGF 145 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~---------------e~~~~yG~te~~~~~~~~~~ 145 (316)
++..+++.++++++++++.+|+++..+... ... ..+.+-.++ .+++.||+||++.......+
T Consensus 261 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--~~~-~lr~~~~gG~~l~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~ 337 (563)
T 1amu_A 261 DFVKFEQYINQKEITVITLPPTYVVHLDPE--RIL-SIQTLITAGSATSPSLVNKWKEKVTYINAYGPTETTICATTWVA 337 (563)
T ss_dssp CHHHHHHHHHHTTCCEEEECHHHHTTSCTT--TCC-SCSEEEEESSCCCHHHHHHHTTTSEEEEEECCGGGSSCSEEEEC
T ss_pred CHHHHHHHHHHcCCcEEEeCHHHHHHHHhc--ccc-cccEEEEEEecCCHHHHHHHHhCCeEEEEECcCHHhHhheeeec
Confidence 788999999999999999999877644321 111 011111122 28889999998643221110
Q ss_pred eEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCC-----------------CCce
Q psy14342 146 ALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCS-----------------CNGA 193 (316)
Q Consensus 146 ~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~-----------------~d~g 193 (316)
.. ......++.|.|+||++ +++|++ |+++|+ .|||++++.+. +|.|
T Consensus 338 ~~--~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg 415 (563)
T 1amu_A 338 TK--ETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQA 415 (563)
T ss_dssp CS--SCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEE
T ss_pred cc--ccCCCCCcccceeCCCEEEEECCCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEE
Confidence 00 00011224566899999 888864 999999 89999875432 2455
Q ss_pred eeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhcchHHHHHH
Q psy14342 194 LYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEALDLVPLVTN 264 (316)
Q Consensus 194 ~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~~ 264 (316)
++++ |. +||.||+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.++++++... ..+.+++.+++++
T Consensus 416 ~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~-~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~-~~~~~~l~~~l~~ 493 (563)
T 1amu_A 416 RWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLK-HMYISETAVSVHKDHQEQPYLCAYFVSEK-HIPLEQLRQFSSE 493 (563)
T ss_dssp EECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTT-STTEEEEEEEEEECTTSCEEEEEEEEESS-CCCHHHHHHHHHH
T ss_pred EEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHh-CCCcceEEEEEeecCCCCeEEEEEEEeCC-CCCHHHHHHHHHh
Confidence 5543 43 99999999999999999999999999 9999999999884 24666665543 2344567777777
Q ss_pred HHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHH
Q psy14342 265 AVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFL 303 (316)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~ 303 (316)
.+. .+..| ..+.+++ +||+|++||++|++|++...
T Consensus 494 ~L~-~y~~P-~~i~~v~--~lP~t~~GKi~r~~L~~~~~ 528 (563)
T 1amu_A 494 ELP-TYMIP-SYFIQLD--KMPLTSNGKIDRKQLPEPDL 528 (563)
T ss_dssp HSC-GGGSC-SEEEECS--SCCBCTTSSBCGGGSCCCCC
T ss_pred hCc-hhhCC-cEEEEec--ccCCCCCcChhHHhcCCccc
Confidence 766 44444 4566655 89999999999999987543
No 25
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=9.3e-43 Score=329.14 Aligned_cols=288 Identities=17% Similarity=0.130 Sum_probs=203.0
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHH-HHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAV-TSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l-~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 79 (316)
|+++|+|||||||.||||++||+++ ..........+++.++|+++.++|++|.+|+...++.++..|+++++..+.
T Consensus 184 d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~--- 260 (529)
T 2v7b_A 184 DIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAER--- 260 (529)
T ss_dssp SEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSC---
T ss_pred CeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCC---
Confidence 6899999999999999999999998 555554445577889999999999999999987678899999999987432
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHHhhh---hhcccccccc-----------------cccccccchhccCC
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT---SLCRSMKLAC-----------------ELYPSRHIALCLDP 139 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~---~~~~~~~ls~-----------------e~~~~yG~te~~~~ 139 (316)
.++..+++.++++++|+++.+|+++..+........ ...+.+..++ .+++.||+||++..
T Consensus 261 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~ 340 (529)
T 2v7b_A 261 PTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHI 340 (529)
T ss_dssp CCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSE
T ss_pred CCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCce
Confidence 268899999999999999999998876554322110 0011111122 28889999998643
Q ss_pred CCCCCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCC----------CCcee
Q psy14342 140 YCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCS----------CNGAL 194 (316)
Q Consensus 140 ~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~----------~d~g~ 194 (316)
.....+ .....++.|.+++|++ +++|++ |+++|+ .|||++++.+. +|.|+
T Consensus 341 ~~~~~~-----~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~ 415 (529)
T 2v7b_A 341 FLSNRA-----GAVEYGTTGRPVPGYEIELRDEAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYC 415 (529)
T ss_dssp EEECCT-----TCCCTTSCCEECTTCEEEEECTTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEE
T ss_pred eecccc-----CCCccCCcccCCCCCEEEEECCCCCCCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEE
Confidence 222211 0122345566899999 888853 999999 89999876543 26666
Q ss_pred eec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC----CcEEEEEEecCCchhhcchHHHHHHHH
Q psy14342 195 YQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT----NLLVVVVELDGNESEALDLVPLVTNAV 266 (316)
Q Consensus 195 ~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~----~~~~~~v~~~~~~~~~~~l~~~~~~~l 266 (316)
+++ |. .||.||+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.+++++++.......+.+.+++++.+
T Consensus 416 ~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~-~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~~l 494 (529)
T 2v7b_A 416 RLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQ-HDAVLEAAVVGVDHGGLVKTRAFVVLKREFAPSEILAEELKAFV 494 (529)
T ss_dssp ECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTT-STTEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred ECCCccEEEeCccCCeEEECCEEECHHHHHHHHHh-CCCcceEEEEEecCCCceEEEEEEEecCCCCcchhHHHHHHHHH
Confidence 654 43 99999999999999999999999999 9999999999982 356666666554321112333444444
Q ss_pred HH---hcCeeecEEEEEcCCCcccCCCchhhHHHHHH
Q psy14342 267 LE---EHHLIVGVAVVVDPGVVPINSRGEKQRMHLRD 300 (316)
Q Consensus 267 ~~---~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~ 300 (316)
.+ .+..| ..+.+++ +||+|++||++|++|++
T Consensus 495 ~~~L~~~~~P-~~i~~v~--~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 495 KDRLAPHKYP-RDIVFVD--DLPKTATGKIQRFKLRE 528 (529)
T ss_dssp HTTSCTTTSC-SEEEEES--CCCBCTTSCBCHHHHHC
T ss_pred HhhcchhhCC-eEEEEec--cCCCCCccchhHHhHhh
Confidence 43 33444 5666766 89999999999999985
No 26
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=2.7e-43 Score=335.60 Aligned_cols=291 Identities=16% Similarity=0.101 Sum_probs=139.2
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||||++||+++...... ...+++.++|+++.++|++|..+... ++.++..|+++++.++.. .
T Consensus 215 d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~v~~~~~~--~ 290 (570)
T 4gr5_A 215 DVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLE-LFGALLFGARCVLQSGQN--P 290 (570)
T ss_dssp SEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHH-HHHHHTTTCEEEECSSSS--C
T ss_pred CeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHH-HHHHHhcCCEEEEcCCcc--C
Confidence 6899999999999999999999998766543 34457788999999999999877665 889999999999976543 3
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhhcccccccc------------------cccccccchhccCCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMKLAC------------------ELYPSRHIALCLDPYCG 142 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~------------------e~~~~yG~te~~~~~~~ 142 (316)
+|..+++.++++++|+++.+|+++..+...........+.+-.++ .+++.||+||++.....
T Consensus 291 ~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~ 370 (570)
T 4gr5_A 291 DPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTH 370 (570)
T ss_dssp CHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEE
T ss_pred CHHHHHHHHHHcCCcEEEecHHHHHHHHhhchhhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeee
Confidence 788999999999999999999988766543222111111111122 27789999998653321
Q ss_pred CCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCCC-----------------
Q psy14342 143 LGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCSC----------------- 190 (316)
Q Consensus 143 ~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~~----------------- 190 (316)
..... ........+.|.|++|++ +++|++ |+++|+ .|||++++.+..
T Consensus 371 ~~~~~-~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~ 449 (570)
T 4gr5_A 371 HAVVA-GDLSGTALPIGVPLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYR 449 (570)
T ss_dssp EECCG-GGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEE
T ss_pred eeecc-cccCCCccccceeeCCCEEEEECCCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEe
Confidence 11000 000011124566899999 888864 999999 999998765421
Q ss_pred --Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCC--chhhcc
Q psy14342 191 --NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGN--ESEALD 257 (316)
Q Consensus 191 --d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~--~~~~~~ 257 (316)
|.|++++ |. +||.||+||++|+||+|.|||++|.+ ||.|.+|+|++.. +.++++++.... ..+.++
T Consensus 450 TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~-~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~ 528 (570)
T 4gr5_A 450 TGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVG-HPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDAAE 528 (570)
T ss_dssp EEEEEEECTTSCEEEEEC--------------------------------------------------------------
T ss_pred CCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhc-CCCcceEEEEEeeCCCCCeEEEEEEEecCCCCCcCHHH
Confidence 4455543 43 99999999999999999999999999 9999999999873 356666655432 234467
Q ss_pred hHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHH
Q psy14342 258 LVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDG 301 (316)
Q Consensus 258 l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~ 301 (316)
+.+.+++.+. .+..| ..+.++ ++||+|++||++|++|++.
T Consensus 529 l~~~l~~~l~-~~~~P-~~i~~v--~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 529 LRRHVAEALP-AYMVP-VECVPV--DELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHhhCc-cccCC-cEEEEc--ccCCCCCCcCcchHhhhcc
Confidence 7888887776 45444 344444 4899999999999999864
No 27
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=6.4e-43 Score=328.77 Aligned_cols=289 Identities=14% Similarity=0.074 Sum_probs=137.4
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+++|+|||||||.||||+++|+++...+......+++.++|+++.++|++|++|+...++..+..|+ +++... .
T Consensus 161 d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~-~~~~~~----~ 235 (509)
T 3ivr_A 161 DGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGA-SVIAAK----F 235 (509)
T ss_dssp SEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCE-EEECSS----C
T ss_pred ccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCc-EEEecc----c
Confidence 68999999999999999999999999999998999999999999999999999999874444444454 444432 2
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhh-hhcccccccc---------------cccccccchhccCCCCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT-SLCRSMKLAC---------------ELYPSRHIALCLDPYCGLG 144 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~-~~~~~~~ls~---------------e~~~~yG~te~~~~~~~~~ 144 (316)
+|..+++.++++++|+++.+|+++..+........ ...+.+-..+ .+++.||+||++.......
T Consensus 236 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~ 315 (509)
T 3ivr_A 236 DPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQLASLRAVTGLDTPETIERFEATCPNATFWATFGQSETSGLSTFAP 315 (509)
T ss_dssp CHHHHHHHHHHHTCCEEEEETTHHHHHHHHCCGGGGTTCCEEEEECCHHHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEE
T ss_pred CHHHHHHHHHHHCCcEEEecHHHHHHHHhcccccchhhhheecccCChHHHHHHHHhcCCCeEEcccCccccccccccCc
Confidence 78999999999999999999999876654331111 0011111111 3888999999964321111
Q ss_pred ceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCC----------CCceeeec-C
Q psy14342 145 FALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCS----------CNGALYQG-A 198 (316)
Q Consensus 145 ~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~----------~d~g~~~~-g 198 (316)
. .....+.|.|++|++ +++|++ |+++|+ .|||++++.+. +|.|++++ |
T Consensus 316 ~------~~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG 389 (509)
T 3ivr_A 316 Y------RDRPKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADG 389 (509)
T ss_dssp G------GGSTTSCCEECTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTTS
T ss_pred c------ccCCCcccccCCCcEEEEECCCCCCCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCCc
Confidence 0 011123455899999 888864 999999 89999987653 26666654 4
Q ss_pred c---CCcc--cceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-hhhcchHHHHHHHHH
Q psy14342 199 E---RLAL--DETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-SEALDLVPLVTNAVL 267 (316)
Q Consensus 199 ~---~GR~--dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-~~~~~l~~~~~~~l~ 267 (316)
. .||. ||+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.++++++..+.. .+.+++.+.+++.+.
T Consensus 390 ~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~-~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~ 468 (509)
T 3ivr_A 390 YLFYAGRAPEKELIKTGGENVYPAEVEGALKQ-HPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASLIA 468 (509)
T ss_dssp CEEEEEEC------------------------------------------------------------------------
T ss_pred eEEEeCCCCcceeEEECCEEECHHHHHHHHHh-CCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHHHHHHHHhhCc
Confidence 3 9999 9999999999999999999999 9999999999884 3466666655432 344678888888877
Q ss_pred HhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcC
Q psy14342 268 EEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 305 (316)
Q Consensus 268 ~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~ 305 (316)
.+..| ..+.+++ +||+|++||++|++|++.+.+.
T Consensus 469 -~~~~P-~~i~~v~--~lP~t~~GKidr~~Lr~~~~~~ 502 (509)
T 3ivr_A 469 -RYKKP-KHVVFVE--ALPKDAKGAIDRAAVKTAHGQE 502 (509)
T ss_dssp --------------------------------------
T ss_pred -ccCCC-cEEEEec--CCCCCCCCCccHHHHHHHHhhc
Confidence 45554 3555554 8999999999999999988763
No 28
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=1e-41 Score=327.54 Aligned_cols=290 Identities=14% Similarity=0.124 Sum_probs=216.4
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhH-HHHhhhhcCceeeeeCCcccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFAL-WVLSSVYSGHHSILIPPSEVE 79 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~-~~~~~l~~G~~~v~~~~~~~~ 79 (316)
|+|||+|||||||.||||+++|+++...+......+++.++|+++.++|++|.+++.. .++.++..|+++++.+..
T Consensus 185 ~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~~--- 261 (617)
T 3rg2_A 185 EVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADP--- 261 (617)
T ss_dssp SEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSSC---
T ss_pred CeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCCC---
Confidence 5899999999999999999999999999999899999999999999999999988864 478999999999997643
Q ss_pred cChHHHHHHHhccceeeEEecccchhhHHhhHHhhh-----hhcccccccc-----------------cccccccchhcc
Q psy14342 80 VNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT-----SLCRSMKLAC-----------------ELYPSRHIALCL 137 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~-----~~~~~~~ls~-----------------e~~~~yG~te~~ 137 (316)
++..+++.+++++++++..+|+.+..+........ ...+.+-.++ .+++.||+||++
T Consensus 262 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~ 340 (617)
T 3rg2_A 262 -SATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGL 340 (617)
T ss_dssp -CHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEE
T ss_pred -CHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcce
Confidence 67889999999999999999998876554332211 0011122222 278899999986
Q ss_pred CCCCCCCceEEEEeeeccCcccccC-CCce-EEecCc-----------eEEecC---CCcccCCCcCCC-----------
Q psy14342 138 DPYCGLGFALWVLSSVYSGHHSILI-PPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCSC----------- 190 (316)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~~~~~~-~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~~----------- 190 (316)
......... .....++.+.|+ ++.+ .++|++ |+++|+ .|||++++.+..
T Consensus 341 ~~~~~~~~~----~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTG 416 (617)
T 3rg2_A 341 VNYTRLDDS----AEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSG 416 (617)
T ss_dssp EEECCTTSC----HHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEE
T ss_pred eecccCCCc----ccccccCCCccCCCCceEEEECCCCCCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecC
Confidence 433221110 000111333455 6667 787764 999999 999999776532
Q ss_pred Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhcchHHH
Q psy14342 191 NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEALDLVPL 261 (316)
Q Consensus 191 d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~~l~~~ 261 (316)
|.|++++ |. +||.||+||++|+||+|.|||++|.+ ||.|.+|+|++.. +.++++++... ..+.+++.+.
T Consensus 417 Dl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~-~p~V~~a~vv~~~~~~~~~~~~a~vv~~~-~~~~~~l~~~ 494 (617)
T 3rg2_A 417 DLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLR-HPAVIYAALVSMEDELMGEKSCAYLVVKE-PLRAVQVRRF 494 (617)
T ss_dssp EEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTT-STTEEEEEEEEEEETTTEEEEEEEEEESS-CCCHHHHHHH
T ss_pred ceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHh-CCCeeEEEEEeccCcccCeeEEEEEEeCC-CCCHHHHHHH
Confidence 5666643 43 99999999999999999999999999 9999999999873 35666666654 3334556666
Q ss_pred HHH-HHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHc
Q psy14342 262 VTN-AVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304 (316)
Q Consensus 262 ~~~-~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~ 304 (316)
+++ .+. .+..| ..+.++ ++||+|++||++|++|++.+.+
T Consensus 495 l~~~~lp-~~~vP-~~~~~v--~~lP~t~~GKidR~~L~~~~~~ 534 (617)
T 3rg2_A 495 LREQGIA-EFKLP-DRVECV--DSLPLTAVGKVDKKQLRQWLAS 534 (617)
T ss_dssp HHTTTCC-GGGSC-SEEEEC--SCCCBCTTSSBCHHHHHHHHHH
T ss_pred HHhCCCc-cccCC-cEEEEe--cccCCCCCCCCcHHHHHHHHhc
Confidence 655 233 34443 455555 4999999999999999988764
No 29
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=5e-42 Score=345.45 Aligned_cols=296 Identities=17% Similarity=0.161 Sum_probs=145.9
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHH----HhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKL----ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPS 76 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~ 76 (316)
|+++|+|||||||.||||+++|+++...+..... .+++.++|+++.++|++|.+++...++.++..|+++++.++.
T Consensus 226 d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~ 305 (979)
T 3tsy_A 226 DVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKF 305 (979)
T ss_dssp SEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSC
T ss_pred ceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCC
Confidence 6899999999999999999999999887765543 345778999999999999999987788999999999997643
Q ss_pred ccccChHHHHHHHhccceeeEEecccchhhHHhhHHhhhh---hcccccccc------------------cccccccchh
Q psy14342 77 EVEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTS---LCRSMKLAC------------------ELYPSRHIAL 135 (316)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~---~~~~~~ls~------------------e~~~~yG~te 135 (316)
++..+++.++++++|+++.+|+++..+......... ..+.+..++ .+++.||+||
T Consensus 306 ----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE 381 (979)
T 3tsy_A 306 ----EINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTE 381 (979)
T ss_dssp ----CHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGG
T ss_pred ----CHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhh
Confidence 678999999999999999999988766544332110 011111111 2788999999
Q ss_pred ccCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc------------eEEecC---CCcccCCCcCCC---------
Q psy14342 136 CLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV---SQYRVRDTFCSC--------- 190 (316)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~---~gY~~~~~~~~~--------- 190 (316)
++..................++.|.+++|++ +++|++ |+++|+ .|||++++.+..
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~ 461 (979)
T 3tsy_A 382 AGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLH 461 (979)
T ss_dssp GCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEE
T ss_pred hhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEE
Confidence 9743221100000001122334566899999 998843 999999 899998766532
Q ss_pred --Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCC-chhhcch
Q psy14342 191 --NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGN-ESEALDL 258 (316)
Q Consensus 191 --d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~-~~~~~~l 258 (316)
|.|++++ |. +||.||+||++|++|+|.|||++|.+ ||.|.+|+|++.. +.++++++..+. ..+.+++
T Consensus 462 TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~-~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l 540 (979)
T 3tsy_A 462 TGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIG-HPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDV 540 (979)
T ss_dssp EEEEEEECTTSCEEEEEESCC-----------------------------------------------------------
T ss_pred cCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHh-CCCcceEEEEEecccCCCcEEEEEEEECCCCCCCHHHH
Confidence 5555554 43 99999999999999999999999999 9999999999873 356666655443 2344677
Q ss_pred HHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHHHcC
Q psy14342 259 VPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 305 (316)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~~~~ 305 (316)
.+++++.+. .+..| ..+.+++ +||+|++||++|++|++.+.++
T Consensus 541 ~~~l~~~l~-~~~~p-~~i~~v~--~lP~t~~GKi~r~~L~~~~~~~ 583 (979)
T 3tsy_A 541 KQFVSKQVV-FYKRI-NKVFFTE--SIPKAPSGKILRKDLRAKLANG 583 (979)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHhcc-cccCC-eEEEEeC--CcCcCCCCCeeHHHHHHHHHhh
Confidence 888887777 45444 3455544 8999999999999999998874
No 30
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=6.1e-40 Score=338.24 Aligned_cols=292 Identities=13% Similarity=0.053 Sum_probs=216.2
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCccccc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEV 80 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 80 (316)
|+|||+|||||||.||||+++|+++.+. ......+++.++|+++.+.|++|+.+.+. ++.++..|+++++.++.. ..
T Consensus 608 ~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~-~~~~l~~G~~l~~~~~~~-~~ 684 (1304)
T 2vsq_A 608 DPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFD-FYASMLNAARLIIADEHT-LL 684 (1304)
T ss_dssp SEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHH-HHHHHTTTCEEEECCGGG-TT
T ss_pred CeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHH-HHHHHHcCCEEEECChhh-cC
Confidence 5899999999999999999999998865 33344577888999999999999988766 899999999999987653 45
Q ss_pred ChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhhcccccccc------------------cccccccchhccCCCCC
Q psy14342 81 NPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMKLAC------------------ELYPSRHIALCLDPYCG 142 (316)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~------------------e~~~~yG~te~~~~~~~ 142 (316)
+|..+++.++++++|+++.+|+++..+...........+.+-+++ .+++.||+||++.....
T Consensus 685 ~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~ 764 (1304)
T 2vsq_A 685 DTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATA 764 (1304)
T ss_dssp CHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEE
T ss_pred CHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHhee
Confidence 789999999999999999999988766432211111112222222 27889999998753321
Q ss_pred CCceEEEEeeeccCcccccCCCce-EEecCc-----------eEEecC---CCcccCCCcCCC-----------------
Q psy14342 143 LGFALWVLSSVYSGHHSILIPPSE-VEVNPA-----------LWLSAV---SQYRVRDTFCSC----------------- 190 (316)
Q Consensus 143 ~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~-----------l~v~~~---~gY~~~~~~~~~----------------- 190 (316)
..... ........+.|.|++|.+ .++|++ |+++|+ .|||++++.|+.
T Consensus 765 ~~~~~-~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTG 843 (1304)
T 2vsq_A 765 HVVHD-LPDSISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTG 843 (1304)
T ss_dssp EECCC-CCSSCSSCCCBEECTTEEEEEECTTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEE
T ss_pred eeccC-ccccCCCCCCceeeCCCEEEEECCCcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecC
Confidence 11000 000011225566899999 888864 999999 999998765421
Q ss_pred Cceeee-cCc---CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchhhcchHHH
Q psy14342 191 NGALYQ-GAE---RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESEALDLVPL 261 (316)
Q Consensus 191 d~g~~~-~g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~~~~l~~~ 261 (316)
|.|+++ +|. +||.||+||++|+||.|.|||++|.+ ||+|.+|+|++.. +.++++++... ..+.+++.+.
T Consensus 844 Dl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~-~p~V~~a~V~~~~~~~~~~~l~a~vv~~~-~~~~~~l~~~ 921 (1304)
T 2vsq_A 844 DLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQE-YPGVKDAVVVADRHESGDASINAYLVNRT-QLSAEDVKAH 921 (1304)
T ss_dssp EEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHH-SSSCCEEEEEEECCSSSCCEEEEEEECSS-SSCHHHHHHH
T ss_pred CeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHh-CCCCceEEEEEEecCCCCEEEEEEEeCCC-CCCHHHHHHH
Confidence 445444 343 99999999999999999999999999 9999999999873 35677766543 3344567777
Q ss_pred HHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHHHHH
Q psy14342 262 VTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGF 302 (316)
Q Consensus 262 ~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~~~~ 302 (316)
+++.++ .+..| ..+.+++ +||+|++||++|++|.+..
T Consensus 922 l~~~Lp-~ymvP-~~~~~l~--~lP~t~~GKidR~~L~~~~ 958 (1304)
T 2vsq_A 922 LKKQLP-AYMVP-QTFTFLD--ELPLTTNGKVNKRLLPKPD 958 (1304)
T ss_dssp HHHHSC-GGGSC-SEEEEES--CCCCCSSCSSCCSCCCCCC
T ss_pred HHHhCh-Hhhhc-cEEEEec--ccCCCCCcccCHhhcCCcc
Confidence 777776 44444 4566665 8999999999999987543
No 31
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=5.4e-40 Score=312.42 Aligned_cols=296 Identities=10% Similarity=0.043 Sum_probs=133.3
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHH--------hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeee
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLA--------CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSIL 72 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~--------~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~ 72 (316)
++++|+|||||||.||||++||+++...+...... +.+...++++.+.|+.|..++.. ++.++..|+++++
T Consensus 176 ~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~~~~ 254 (562)
T 3ite_A 176 LDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGE-MFLAWRFGLCAVT 254 (562)
T ss_dssp SEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHH-HHHHHHTTCEEEE
T ss_pred CcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHH-HHHHHhcccEEEe
Confidence 46999999999999999999999998877665544 34667888999999999988776 7889999999988
Q ss_pred eCCcccccChHHHHHHHhccceeeEEecccchhhHHhhHHhhhhhcccccccc-----------------cccccccchh
Q psy14342 73 IPPSEVEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMKLAC-----------------ELYPSRHIAL 135 (316)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~-----------------e~~~~yG~te 135 (316)
.+... .+..+++.++++++|+++.+|+++..+......... .+.+-.++ .+++.||+||
T Consensus 255 ~~~~~---~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~~~~~~~-lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE 330 (562)
T 3ite_A 255 GERLS---MLDDLPRTFRELGVTHAGIVPSLLDQTGLVPEDAPH-LVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTE 330 (562)
T ss_dssp CCHHH---HHHSHHHHHHHTTCCEEEECHHHHHHHTCCGGGSTT-CCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGG
T ss_pred cchhh---CHHHHHHHHHHcCCCEEEcCHHHHhhcccCccccCc-eEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccch
Confidence 65332 245678999999999999999877544332222211 11111111 2788999999
Q ss_pred ccCCCCCCCceEEEEeeeccCcccccCCCce-EEecCc------------eEEecC---CCcccCCCcCCC---------
Q psy14342 136 CLDPYCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV---SQYRVRDTFCSC--------- 190 (316)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~---~gY~~~~~~~~~--------- 190 (316)
++........ ......++.|.|+++.+ +++|++ |+++|+ .|||++++.+..
T Consensus 331 ~~~~~~~~~~----~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~ 406 (562)
T 3ite_A 331 VTIGCSAGRI----LPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMY 406 (562)
T ss_dssp GCSCSEEEEC----CTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEE
T ss_pred heeeeeeeee----cCCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEE
Confidence 8643221110 00011223455899999 888753 999999 899999877642
Q ss_pred ---Cceeeec-Cc---CCcccceeEECCcccChHhHHHHHHHhc-cccceeEEEeeC-----CcEEEEEEecC-Cchh--
Q psy14342 191 ---NGALYQG-AE---RLALDETIMLRGMRYHPIDIENSVMRAH-KKIAECAVFTWT-----NLLVVVVELDG-NESE-- 254 (316)
Q Consensus 191 ---d~g~~~~-g~---~GR~dd~i~~~G~~v~p~eIE~~l~~~~-p~v~~~~v~~~~-----~~~~~~v~~~~-~~~~-- 254 (316)
|.|++++ |. +||.||+||++|+||+|.|||++|.+ | |.+.+++|++.. +..++.+.... ....
T Consensus 407 ~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~-~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~ 485 (562)
T 3ite_A 407 RTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRS-LSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGE 485 (562)
T ss_dssp EEEEEEEECTTSCEEEEEEC------------------------------------------------------------
T ss_pred ecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHh-cCCCceeEEEEEecCCCCcceEEEEEEeccccccccc
Confidence 4555543 43 99999999999999999999999999 7 888888888763 23333322221 1111
Q ss_pred -----------hcchHHHHHHHHHHhcCeeecEEEEEcCCCcccC-CCchhhHHHHHHHHHcCCCCcc
Q psy14342 255 -----------ALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPIN-SRGEKQRMHLRDGFLADQLDPI 310 (316)
Q Consensus 255 -----------~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t-~~gKi~r~~l~~~~~~~~~~~~ 310 (316)
.+++.+++++++. .+..| ..+.+++ +||+| ++||++|++|++.+.+-..+.+
T Consensus 486 ~~~~~~~~~~~~~~l~~~~~~~L~-~y~~P-~~i~~v~--~lP~t~~~GKi~r~~L~~~~~~~~~~~~ 549 (562)
T 3ite_A 486 LRWINENYKEINNSLRQACEQTLP-AYMVP-DFIIPIS--FIPLRDTSAKTDAKALEHMFHTLSLGEL 549 (562)
T ss_dssp --------------------------------------------------------------------
T ss_pred ccccccchhhHHHHHHHHHHhhCC-cccCC-cEEEEec--cCCCCCCCCcchHHHHHHHHhccCHHHH
Confidence 1356666666666 44444 3455555 89998 9999999999999887544433
No 32
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=3.7e-36 Score=277.49 Aligned_cols=281 Identities=12% Similarity=0.089 Sum_probs=199.4
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHH---HhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKL---ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSE 77 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~ 77 (316)
|+++|+|||||||.||+|++||+++...+..+.. .+++.++|+++.++|+.|..+.+..++.++..|+++++.++.
T Consensus 87 ~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~- 165 (436)
T 3qov_A 87 DGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG- 165 (436)
T ss_dssp HEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-
T ss_pred CeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-
Confidence 4789999999999999999999999776655533 458899999999999988888777688999999999987643
Q ss_pred cccChHHHHHHHhccceeeEEecccchhhHHhhHHhhhh-----hcccccccc-----------------cccccccchh
Q psy14342 78 VEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTS-----LCRSMKLAC-----------------ELYPSRHIAL 135 (316)
Q Consensus 78 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~-----~~~~~~ls~-----------------e~~~~yG~te 135 (316)
++..+++.++++++++++.+|+++..+......... ..+.+-.++ .+++.||+||
T Consensus 166 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE 242 (436)
T 3qov_A 166 ---NSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTE 242 (436)
T ss_dssp ---CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGG
T ss_pred ---CHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchh
Confidence 688999999999999999999988776654432110 011112222 2888999999
Q ss_pred ccCC-CCCCCceEEEEeeeccCcccccCCCce-EEecCc------------eEEecC--CCcccCCCcCCCCceeeec-C
Q psy14342 136 CLDP-YCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV--SQYRVRDTFCSCNGALYQG-A 198 (316)
Q Consensus 136 ~~~~-~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~--~gY~~~~~~~~~d~g~~~~-g 198 (316)
++.. .... +....| .+.+.+++. .++|++ |+++|. ..+ ..-.--++|.|++++ |
T Consensus 243 ~~~~~~~~~-------~~~~~g-~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~~~~~-~~~~y~TGDl~~~~~~g 313 (436)
T 3qov_A 243 MNGPGVAFE-------CQEQNG-MHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLDREMM-PLIRYRTRDLTRILPGK 313 (436)
T ss_dssp GTEEEEEEE-------CTTCSS-EEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESSCCSS-CCCSEEEEEEECEECSC
T ss_pred hcCCeeEEe-------cCCCCe-eEEccCceEEEEEECCCCCCCCCCCceEEEEeccCcCCc-eEEEEEcCCEEEEcCCC
Confidence 9432 1111 101111 123566888 888842 888887 221 110112347776643 4
Q ss_pred ----------c--CCcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCchh----hcc
Q psy14342 199 ----------E--RLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNESE----ALD 257 (316)
Q Consensus 199 ----------~--~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~~----~~~ 257 (316)
. .||.||+||++|++|+|.|||++|.+ ||.|.+++|++.. +.+++++++.....+ .++
T Consensus 314 c~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~-~p~v~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~ 392 (436)
T 3qov_A 314 CPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQ-FPELGSNYLITLETVNNQDEMIVEVELSDLSTDNYIELEK 392 (436)
T ss_dssp CTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTT-CTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHH
T ss_pred CCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHh-CcCcCCcEEEEEEcCCCCcEEEEEEEEcCccccchhhHHH
Confidence 2 89999999999999999999999999 9999999998873 367777777622222 367
Q ss_pred hHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHH
Q psy14342 258 LVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMH 297 (316)
Q Consensus 258 l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~ 297 (316)
+.+++++.+.+....+ ..+.+++.++||+|+ ||++|..
T Consensus 393 l~~~l~~~l~~~~~~p-~~i~~v~~~~lP~t~-GKi~R~~ 430 (436)
T 3qov_A 393 IRRDIIRQLKDEILVT-PKVKLVKKGSLPQSE-GKAVRVK 430 (436)
T ss_dssp HHHHHHHHHHHHHSSC-CEEEEECTTCCC--------CEE
T ss_pred HHHHHHHHHHHhcCCc-eEEEEeCCCcccCcC-CcceEEE
Confidence 8899999999665666 478888888999999 9998853
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=4.5e-36 Score=277.47 Aligned_cols=283 Identities=12% Similarity=0.101 Sum_probs=201.3
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHH---HhcCCCCCceEEecCCc-CChhhhHHHHhhhhcCceeeeeCCc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKL---ACELYPSRHIALCLDPY-CGLGFALWVLSSVYSGHHSILIPPS 76 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~-h~~g~~~~~~~~l~~G~~~v~~~~~ 76 (316)
|+++|+|||||||.||+|++||+++...+..... .+++.++|+++.++|+. |..++.. .+.++..|+++++.++.
T Consensus 93 ~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~ 171 (443)
T 2y4o_A 93 QVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGI-HYGAERLGCMVVPMSGG 171 (443)
T ss_dssp GCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHH-HHHHHHHTCEEECCCSC
T ss_pred heEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHH-HHHHHHcCCEEEECCCC
Confidence 4689999999999999999999998776544433 57888999999999984 5555544 78899999999887643
Q ss_pred ccccChHHHHHHHhccceeeEEecccchhhHHhhHHhhh-----hhcccccccc-----------------cccccccch
Q psy14342 77 EVEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT-----SLCRSMKLAC-----------------ELYPSRHIA 134 (316)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~-----~~~~~~~ls~-----------------e~~~~yG~t 134 (316)
++..+++.++++++++++.+|+++..+........ ...+.+-.++ .+++.||+|
T Consensus 172 ----~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~T 247 (443)
T 2y4o_A 172 ----QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLS 247 (443)
T ss_dssp ----CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEET
T ss_pred ----CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCch
Confidence 68899999999999999999998876655432210 0111122222 278899999
Q ss_pred hccCC-CCCCCceEEEEeeecc-CcccccCCCce-EEecCc------------eEEecC--CCcccCCCcCCCCceeeec
Q psy14342 135 LCLDP-YCGLGFALWVLSSVYS-GHHSILIPPSE-VEVNPA------------LWLSAV--SQYRVRDTFCSCNGALYQG 197 (316)
Q Consensus 135 e~~~~-~~~~~~~~~~~~~~~~-g~~~~~~~g~~-~i~d~~------------l~v~~~--~gY~~~~~~~~~d~g~~~~ 197 (316)
|+++. .+...+ ... | ...+.++.. .++|++ |+++|. ..+ ..-.--++|.|++++
T Consensus 248 E~~g~~~~~~~~-------~~~~g-~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~t~~~~-p~~~y~TGDl~~~~~ 318 (443)
T 2y4o_A 248 EVMGPGVACECV-------ETKDG-PVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSLTKEAM-PVIRYRTRDLTALLP 318 (443)
T ss_dssp TTTEEEEEEECT-------TTCCS-EEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESSCSSS-CCSSEEEEEEECEEC
T ss_pred hhcCCeEEeccC-------CCCCc-eEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCCCcccC-hhheeecCCEEEEcC
Confidence 97421 111110 001 2 112456777 777742 788876 222 000112336666654
Q ss_pred --C--------cCCcccceeEECCcccChHhHHHHHHHhccccceeEEEee-----CCcEEEEEEecC------Cchhhc
Q psy14342 198 --A--------ERLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELDG------NESEAL 256 (316)
Q Consensus 198 --g--------~~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~-----~~~~~~~v~~~~------~~~~~~ 256 (316)
| ..||.||+||++|++|+|.|||++|.+ ||.|.+++++++ ++.+++++++.+ ...+.+
T Consensus 319 ~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~-~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~ 397 (443)
T 2y4o_A 319 PTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVA-LPLLSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERA 397 (443)
T ss_dssp CSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHT-STTEEEEEEEEEEEETTEEEEEEEEEECHHHHTTCCHHHHH
T ss_pred CCCCCccccCccccccCCeEEECCEEECHHHHHHHHHh-CcCcCccEEEEEecCCCCceEEEEEEECCcccccchhhHHH
Confidence 3 279999999999999999999999999 999999888875 235777777654 122346
Q ss_pred chHHHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHHHH
Q psy14342 257 DLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLR 299 (316)
Q Consensus 257 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~l~ 299 (316)
++.+++++.+....+.+ ..+.++.+++||+|++||++|+..+
T Consensus 398 ~l~~~l~~~l~~~~~~p-~~v~~v~~~~lP~t~~GKi~r~~~~ 439 (443)
T 2y4o_A 398 ALARELQHRIKTMVGVS-SGVTVLAAGGIPATATGKARRVIDR 439 (443)
T ss_dssp HHHHHHHHHHHHHTCCC-CEEEEECTTCSCCCTTSCCCSEEEC
T ss_pred HHHHHHHHHHHHHhCCc-eEEEEeCCCcccCccCCcceEEEec
Confidence 78889999888665665 4688888789999999999987544
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=7.1e-35 Score=268.94 Aligned_cols=281 Identities=12% Similarity=0.091 Sum_probs=200.1
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHH---HHhcCCCCCceEEecCC-cCChhhhHHHHhhhhcCceeeeeCCc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMK---LACELYPSRHIALCLDP-YCGLGFALWVLSSVYSGHHSILIPPS 76 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~---~~~~~~~~d~~l~~~p~-~h~~g~~~~~~~~l~~G~~~v~~~~~ 76 (316)
|+++|+|||||||.||+|++||+++...+..+. ..++++++|+++.++|+ +|..++.. ++.++..|+++++.++.
T Consensus 91 ~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~ 169 (437)
T 2y27_A 91 RISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGA-HYGAERAGLTVIPFGGG 169 (437)
T ss_dssp GCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHH-HHHHHHTTCEEECCCSC
T ss_pred HeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHH-HHHHHHcCCEEEeCCCC
Confidence 468999999999999999999999877654433 35788899999999998 56666554 78999999999876543
Q ss_pred ccccChHHHHHHHhccceeeEEecccchhhHHhhHHhhh-----hhcccccccc-----------------cccccccch
Q psy14342 77 EVEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT-----SLCRSMKLAC-----------------ELYPSRHIA 134 (316)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~-----~~~~~~~ls~-----------------e~~~~yG~t 134 (316)
++..+++.++++++++++.+|+++..+........ ...+.+-.++ .+++.||+|
T Consensus 170 ----~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~T 245 (437)
T 2y27_A 170 ----QTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLS 245 (437)
T ss_dssp ----CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEET
T ss_pred ----CHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCch
Confidence 68899999999999999999999876655432210 0111112222 288899999
Q ss_pred hccCC-CCCCCceEEEEeeeccCcccccCCCce-EEecCc------------eEEecC--CCcccCCCcCCCCceeeec-
Q psy14342 135 LCLDP-YCGLGFALWVLSSVYSGHHSILIPPSE-VEVNPA------------LWLSAV--SQYRVRDTFCSCNGALYQG- 197 (316)
Q Consensus 135 e~~~~-~~~~~~~~~~~~~~~~g~~~~~~~g~~-~i~d~~------------l~v~~~--~gY~~~~~~~~~d~g~~~~- 197 (316)
|+++. .+..++. ...| .+.+.+++. .++|++ |+++|. ..+ ..-.--++|.|++++
T Consensus 246 E~~g~~~~~~~~~------~~~g-~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~t~~~~-~~~~y~TGDl~~~~~~ 317 (437)
T 2y27_A 246 EVMGPGVASECVE------TKDG-PTIWEDHFYPEIIDPETGEVLPDGELGELVFTSLTKEAL-PIIRYRTRDLTRLLPG 317 (437)
T ss_dssp TTTEEEEEECCTT------TCSS-CEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESSCSSS-CCCSEEEEEEECEECC
T ss_pred hhcCCeeEEecCC------CCCc-eeEccCceEEEEEcCCCCCCCCCCCccEEEEecCCcCCc-hhheeecCCEEEEeCC
Confidence 97421 2111110 0012 112456777 777742 788876 222 000112347777754
Q ss_pred -C--------cCCcccceeEECCcccChHhHHHHHHHhccccceeEEEee-----CCcEEEEEEecCCc----hhhcchH
Q psy14342 198 -A--------ERLALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTW-----TNLLVVVVELDGNE----SEALDLV 259 (316)
Q Consensus 198 -g--------~~GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~-----~~~~~~~v~~~~~~----~~~~~l~ 259 (316)
| ..||.||+||++|++|+|.|||++|.+ ||.|.+++|+++ ++.+++++++.+.. .+.+++.
T Consensus 318 ~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~-~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~ 396 (437)
T 2y27_A 318 TARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLK-QRALAPHYQIVLTKEGPLDVLTLNVEPCPETAPDTAAIQVAK 396 (437)
T ss_dssp SSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTT-CTTBCSCCEEEEEEETTEEEEEEEECBCTTTTTCHHHHHHHH
T ss_pred CCCCccccCccccccCCeEEECCeEECHHHHHHHHHh-CcCcCccEEEEEeecCCCceEEEEEEECCCccchhhhHHHHH
Confidence 3 289999999999999999999999999 999998888875 24677777776543 2336788
Q ss_pred HHHHHHHHHhcCeeecEEEEEcCCCcccCCCchhhHHH
Q psy14342 260 PLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMH 297 (316)
Q Consensus 260 ~~~~~~l~~~~~~~~~~~~~~~~~~lP~t~~gKi~r~~ 297 (316)
+++++.+....+.+ ..+.++.+++||+|+ ||++|+.
T Consensus 397 ~~l~~~l~~~~~~p-~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 397 QALAYDIKSLIGVT-AVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp HHHHHHHHHHHCCC-EEEEECCTTCSCCCS-SSCCCEE
T ss_pred HHHHHHHHHhcCCc-eEEEEeCCCCccCCC-CcceEEE
Confidence 88998888655665 357888778999999 9999864
No 35
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=99.93 E-value=1.3e-26 Score=215.93 Aligned_cols=203 Identities=13% Similarity=0.117 Sum_probs=140.7
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHHHHhcCCC------CCceEEecCCcCChhhhHHHHhhhhcCceeeeeC
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYP------SRHIALCLDPYCGLGFALWVLSSVYSGHHSILIP 74 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~~~~~~~~------~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~ 74 (316)
|+++|+|||||||.||||++||+++..++......+++.+ +|+++.++|++|++|++..++.++..|+++++.+
T Consensus 184 d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~ 263 (480)
T 3t5a_A 184 STAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTS 263 (480)
T ss_dssp SEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECC
T ss_pred ceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEEC
Confidence 5899999999999999999999999999888888888877 8999999999999998877899999999999987
Q ss_pred CcccccChHHHHHHHhccceeeEEecccchhhHHhhH---Hhhh----hhcccccccc----------------------
Q psy14342 75 PSEVEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSH---AAVT----SLCRSMKLAC---------------------- 125 (316)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~l~~~~---~~~~----~~~~~~~ls~---------------------- 125 (316)
+..+..+|..|++.+++++++ +..+|+++..+.... .... ...+.+-.++
T Consensus 264 ~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~ 342 (480)
T 3t5a_A 264 PVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQE 342 (480)
T ss_dssp HHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCG
T ss_pred HHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCCh
Confidence 665556899999999999999 778888776554321 1100 0011111111
Q ss_pred -cccccccchhccCCCCCCCc----eE-EEE-e--------------eeccCcccccCCCce-EEecCc-----------
Q psy14342 126 -ELYPSRHIALCLDPYCGLGF----AL-WVL-S--------------SVYSGHHSILIPPSE-VEVNPA----------- 172 (316)
Q Consensus 126 -e~~~~yG~te~~~~~~~~~~----~~-~~~-~--------------~~~~g~~~~~~~g~~-~i~d~~----------- 172 (316)
.+++.||+||++.......+ .. ... . ....++.|.|++ .+ +++|++
T Consensus 343 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~G 421 (480)
T 3t5a_A 343 RVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGTVG 421 (480)
T ss_dssp GGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTBCE
T ss_pred hhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCCEE
Confidence 15678999999753322111 00 000 0 011124455788 88 888753
Q ss_pred -eEEecC---CCcccCCCcCCC--------------CceeeecCcCCcccc
Q psy14342 173 -LWLSAV---SQYRVRDTFCSC--------------NGALYQGAERLALDE 205 (316)
Q Consensus 173 -l~v~~~---~gY~~~~~~~~~--------------d~g~~~~g~~GR~dd 205 (316)
|+++|+ .|||++++.+.. +.||+++|++||.||
T Consensus 422 El~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~dd 472 (480)
T 3t5a_A 422 EIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVTD 472 (480)
T ss_dssp EEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEET
T ss_pred EEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEEC
Confidence 999999 999999876532 345788887777653
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.81 E-value=5.1e-20 Score=165.83 Aligned_cols=196 Identities=13% Similarity=-0.015 Sum_probs=121.1
Q ss_pred CeEEEEeccCCCCCceEEEEeHHHHHHHHHHHH---HHhcCCCCCceEEecCC-cCChhhhHHHHhhhhcCceeeeeCCc
Q psy14342 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMK---LACELYPSRHIALCLDP-YCGLGFALWVLSSVYSGHHSILIPPS 76 (316)
Q Consensus 1 ~~a~i~~TSGTTG~PK~V~~t~~~l~~~~~~~~---~~~~~~~~d~~l~~~p~-~h~~g~~~~~~~~l~~G~~~v~~~~~ 76 (316)
|+++|+|||||||.||+|.++|+++...+.... ..+++.++|+++.++|+ +|..|+.. .+.++..|+ +++....
T Consensus 92 ~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~-~~~~~~~G~-~v~~~~~ 169 (369)
T 3hgu_A 92 SHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAIN-KERALRLGG-MFFSIDI 169 (369)
T ss_dssp CCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHH-HHHHHHTTS-CEECCCC
T ss_pred ccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHH-HHHHHHcCC-EEECccC
Confidence 468999999999999999999999988877443 44567889999999999 99988887 666788999 4443321
Q ss_pred ccccChH-----------------------HHHHHHhccceeeEEecccchhhHHhhHHhhh---hhcccccccc-----
Q psy14342 77 EVEVNPA-----------------------LWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVT---SLCRSMKLAC----- 125 (316)
Q Consensus 77 ~~~~~~~-----------------------~~~~~~~~~~~t~~~~~~~~~~~l~~~~~~~~---~~~~~~~ls~----- 125 (316)
+|. .+++.+++++++++..+|+++..+........ ...+.+..++
T Consensus 170 ----dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~ 245 (369)
T 3hgu_A 170 ----DPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNL 245 (369)
T ss_dssp ----CHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCH
T ss_pred ----ChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCH
Confidence 344 67779999999999999998876654322110 0011111111
Q ss_pred --------------cccccccchhccCCCCCCCceEEEEeeeccCccccc------CCCce-EEecC-c-----------
Q psy14342 126 --------------ELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSIL------IPPSE-VEVNP-A----------- 172 (316)
Q Consensus 126 --------------e~~~~yG~te~~~~~~~~~~~~~~~~~~~~g~~~~~------~~g~~-~i~d~-~----------- 172 (316)
.+++.||+||++.... .+... +.|.+ +|+++ +++|+ +
T Consensus 246 ~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~--------~~~~~--~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GE 315 (369)
T 3hgu_A 246 DEIKFIASEILPDCEFSASYGSTSALGVSR--------SLLIT--SESQQVIYDSFSPFITYDVVDSITAQTVEYGERGN 315 (369)
T ss_dssp HHHHHHHHHTCTTSEEEEEEEEGGGTEEEE--------ECCBC--TTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEE
T ss_pred HHHHHHHHHhCCCcEEEcccCchhhhccee--------ccccc--cCCCcccccCCCCCeEEEEECCCCCcCCCCCCceE
Confidence 3677899999863221 01111 23335 88988 88887 2
Q ss_pred eEEecC------CCcccCCCcCCC--CceeeecCc-----CCcccceeEECCc
Q psy14342 173 LWLSAV------SQYRVRDTFCSC--NGALYQGAE-----RLALDETIMLRGM 212 (316)
Q Consensus 173 l~v~~~------~gY~~~~~~~~~--d~g~~~~g~-----~GR~dd~i~~~G~ 212 (316)
|++++. .+|+.++.++.. ..||..+|. ++|.|+..++.|.
T Consensus 316 l~vt~l~~~~~l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 316 VIVTHLSPWAFYPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EEEEEcCcccccccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 777765 467665443322 344554443 7888888888773
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.71 E-value=2.4e-17 Score=121.98 Aligned_cols=92 Identities=24% Similarity=0.347 Sum_probs=72.9
Q ss_pred CcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCch----hhcchHHHHHHHHHHhcC
Q psy14342 201 LALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNES----EALDLVPLVTNAVLEEHH 271 (316)
Q Consensus 201 GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~~----~~~~l~~~~~~~l~~~~~ 271 (316)
.|.||||+++|.||+|.|||++|.+ ||+|.+++++++. +.+.++++..+... ..+++.+++++.+...++
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~-~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~g 79 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQ-FKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEIL 79 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHT-CTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCcCEEEEECCEEECHHHHHHHHHh-CCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhC
Confidence 4999999999999999999999999 9999999888873 35667776665432 225677888888887877
Q ss_pred eeecEEEEEcCCCcccCCCchhhH
Q psy14342 272 LIVGVAVVVDPGVVPINSRGEKQR 295 (316)
Q Consensus 272 ~~~~~~~~~~~~~lP~t~~gKi~r 295 (316)
+++ .+.++++++||+| +||++|
T Consensus 80 v~~-~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 80 VTP-RVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp SCC-EEEEECTTCSCCC----CCC
T ss_pred Ccc-ceEEEcCCeecCC-CCCcch
Confidence 765 6889998899998 699987
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.71 E-value=2.5e-17 Score=121.72 Aligned_cols=92 Identities=24% Similarity=0.370 Sum_probs=74.6
Q ss_pred CcccceeEECCcccChHhHHHHHHHhccccceeEEEeeC-----CcEEEEEEecCCc-----hhhcchHHHHHHHHHHhc
Q psy14342 201 LALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWT-----NLLVVVVELDGNE-----SEALDLVPLVTNAVLEEH 270 (316)
Q Consensus 201 GR~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~~~~-----~~~~~~v~~~~~~-----~~~~~l~~~~~~~l~~~~ 270 (316)
||.||+|+++|.||+|.|||++|.+ ||+|.+++++++. +.+++++++ +.. .+.+++.+++++.+.+.+
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~-~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~~ 78 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQ-FKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDEI 78 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHT-CTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHHh-CCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999 9999987777662 467888877 432 234678899999998888
Q ss_pred CeeecEEEEEcCCCcccCCCchhhHH
Q psy14342 271 HLIVGVAVVVDPGVVPINSRGEKQRM 296 (316)
Q Consensus 271 ~~~~~~~~~~~~~~lP~t~~gKi~r~ 296 (316)
+.++ .+.++++..||+| +||++|.
T Consensus 79 ~~~~-~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 79 LVTP-RVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp SSCC-EEEEECTTCSCCC----CCCE
T ss_pred CCce-EEEEECCCCccCC-CCceEEE
Confidence 8876 7899998899999 9999873
No 39
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=88.05 E-value=1 Score=42.20 Aligned_cols=27 Identities=15% Similarity=-0.007 Sum_probs=25.8
Q ss_pred CCcccceeEECCcccChHhHHHHHHHh
Q psy14342 200 RLALDETIMLRGMRYHPIDIENSVMRA 226 (316)
Q Consensus 200 ~GR~dd~i~~~G~~v~p~eIE~~l~~~ 226 (316)
+||.|+++++.|+|+++.+||++|.++
T Consensus 428 ~gR~~~~l~~~Ge~~~~~~v~~al~~a 454 (581)
T 4epl_A 428 ICRRNLILSINIDKNTERDLQLSVESA 454 (581)
T ss_dssp EEETTCCBCSSSCCBCHHHHHHHHHHH
T ss_pred EeecCCeEEeeeeECCHHHHHHHHHHH
Confidence 999999999999999999999999873
No 40
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=84.70 E-value=7.4 Score=35.89 Aligned_cols=84 Identities=18% Similarity=0.178 Sum_probs=64.1
Q ss_pred EEEeHHHHHHHHHHHHHH---hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccChHHHHHHHhccce
Q psy14342 18 IKMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 94 (316)
Q Consensus 18 V~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~ 94 (316)
..+|.+.+...+..+... .++.++|++..+++-+ ..++..++..+..|+..+..++.. .+.++...++..++
T Consensus 49 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~--~e~~~~~lA~~~~Gav~vpl~~~~---~~~~l~~~l~~~~~ 123 (550)
T 3rix_A 49 VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENS--LQFFMPVLGALFIGVAVAPANDIY---NERELLNSMNISQP 123 (550)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSC--TTTHHHHHHHHHHTCEEEECCTTC---CHHHHHHHHHHHCC
T ss_pred cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCc--ccHHHHHHHHHHcCCEEeecCCcC---CHHHHHHHHHhcCC
Confidence 368999887776655554 4788999999998754 356666889999999999887653 56778889999999
Q ss_pred eeEEecccchhh
Q psy14342 95 RDTFCSYGMLAG 106 (316)
Q Consensus 95 t~~~~~~~~~~~ 106 (316)
.++++.......
T Consensus 124 ~~vi~~~~~~~~ 135 (550)
T 3rix_A 124 TVVFVSKKGLQK 135 (550)
T ss_dssp SEEEECGGGHHH
T ss_pred eEEEEcHHHHHH
Confidence 988877665443
No 41
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=83.18 E-value=0.38 Score=45.26 Aligned_cols=27 Identities=7% Similarity=0.070 Sum_probs=25.8
Q ss_pred CCcccceeEECCcccChHhHHHHHHHh
Q psy14342 200 RLALDETIMLRGMRYHPIDIENSVMRA 226 (316)
Q Consensus 200 ~GR~dd~i~~~G~~v~p~eIE~~l~~~ 226 (316)
+||.+|+|++.|+||++.+||++|.++
T Consensus 433 ~gR~~~~l~~~Geki~~~~v~~av~~a 459 (609)
T 4b2g_A 433 VRRKNVLLSIDSDKTDEAELQKAVDNA 459 (609)
T ss_dssp EEETTCCBCSSSCCBCHHHHHHHHHHH
T ss_pred EEecCCeEEccccCCCHHHHHHHHHHH
Confidence 999999999999999999999999973
No 42
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=81.28 E-value=9.8 Score=35.05 Aligned_cols=83 Identities=6% Similarity=0.117 Sum_probs=63.3
Q ss_pred EEEeHHHHHHHHHHHHHH---hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccChHHHHHHHhccce
Q psy14342 18 IKMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 94 (316)
Q Consensus 18 V~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~ 94 (316)
-.+|.+.|...+..+... .++.++|++..+++-+ ..++..++..+..|+..+..++.. .+.+...++++.++
T Consensus 51 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~vpl~~~~---~~~~l~~il~~~~~ 125 (549)
T 3g7s_A 51 ESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNS--IDYVMTIYALWRVAATPVPINPMY---KSFELEHILNDSEA 125 (549)
T ss_dssp SEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSS--HHHHHHHHHHHHTTCEEEECCTTC---CHHHHHHHHHHTTC
T ss_pred ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--HHHHHHHHHHHHhCCEEEccCCCC---CHHHHHHHHHhcCC
Confidence 368999888776665554 4788999999998753 466666889999999999887653 56778889999999
Q ss_pred eeEEecccchh
Q psy14342 95 RDTFCSYGMLA 105 (316)
Q Consensus 95 t~~~~~~~~~~ 105 (316)
.++++......
T Consensus 126 ~~~i~~~~~~~ 136 (549)
T 3g7s_A 126 TTLVVHSMLYE 136 (549)
T ss_dssp SEEEEEGGGHH
T ss_pred CEEEEChHHHH
Confidence 98877665443
No 43
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=80.86 E-value=0.41 Score=44.81 Aligned_cols=27 Identities=11% Similarity=0.054 Sum_probs=25.8
Q ss_pred CCcccceeEECCcccChHhHHHHHHHh
Q psy14342 200 RLALDETIMLRGMRYHPIDIENSVMRA 226 (316)
Q Consensus 200 ~GR~dd~i~~~G~~v~p~eIE~~l~~~ 226 (316)
+||.||+|++.|+|+++++||++|.++
T Consensus 421 ~gR~~~~l~~~Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 421 VRRENVVLSIDSDKTNEEDLFKAVSQA 447 (581)
T ss_dssp EEETTEEECSSSCCEEHHHHHHHHHHC
T ss_pred EEecCCEEEeeeeECCHHHHHHHHHHH
Confidence 999999999999999999999999973
No 44
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=80.39 E-value=12 Score=34.31 Aligned_cols=82 Identities=17% Similarity=0.097 Sum_probs=62.8
Q ss_pred EEeHHHHHHHHHHHHHH---hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccChHHHHHHHhcccee
Q psy14342 19 KMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVR 95 (316)
Q Consensus 19 ~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~t 95 (316)
.+|.+.+...+..+... .++.++|++..+++- ...++..++..+..|+..+..++.. .+.+....+++.++.
T Consensus 49 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~--~~~~~~~~la~~~~Gav~vpl~~~~---~~~~l~~~l~~~~~~ 123 (536)
T 3ni2_A 49 VYTYADVELTARRVASGLNKIGIQQGDVIMLFLPS--SPEFVLAFLGASHRGAIITAANPFS---TPAELAKHAKASRAK 123 (536)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCS--SHHHHHHHHHHHHHTCEEEECCTTC---CHHHHHHHHHHHTEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC--cHHHHHHHHHHHHhCCEEeccCCCC---CHHHHHHHHHhcCCE
Confidence 68999887776655554 478899999998775 3466666889999999999887653 567788899999999
Q ss_pred eEEecccchh
Q psy14342 96 DTFCSYGMLA 105 (316)
Q Consensus 96 ~~~~~~~~~~ 105 (316)
++++......
T Consensus 124 ~~i~~~~~~~ 133 (536)
T 3ni2_A 124 LLITQACYYE 133 (536)
T ss_dssp EEEECGGGTH
T ss_pred EEEEChHHHH
Confidence 8877665443
No 45
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=79.51 E-value=13 Score=34.34 Aligned_cols=81 Identities=17% Similarity=0.094 Sum_probs=62.3
Q ss_pred EEeHHHHHHHHHHHHHH---hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccChHHHHHHHhcccee
Q psy14342 19 KMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVR 95 (316)
Q Consensus 19 ~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~t 95 (316)
.+|.+.+...+..+... .++.++|++..+++-+ ..++..++..+..|+..+..++.. .+.++...+++.++.
T Consensus 52 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~--~e~~~~~la~~~~Gav~vpl~~~~---~~~~l~~~l~~~~~~ 126 (548)
T 2d1s_A 52 DYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENC--EEFFIPVIAGLFIGVGVAPTNEIY---TLRELVHSLGISKPT 126 (548)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSC--TTTHHHHHHHHHHTCEEEEECTTS---CHHHHHHHHHHHCCS
T ss_pred EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHhhCCEEeccCCCC---CHHHHHHHHHhcCCe
Confidence 68999888776655554 4788999999997754 356666889999999999887653 467788899999998
Q ss_pred eEEecccch
Q psy14342 96 DTFCSYGML 104 (316)
Q Consensus 96 ~~~~~~~~~ 104 (316)
++++.....
T Consensus 127 ~vi~~~~~~ 135 (548)
T 2d1s_A 127 IVFSSKKGL 135 (548)
T ss_dssp EEEECTTTH
T ss_pred EEEEcHHHH
Confidence 887766554
No 46
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=78.96 E-value=14 Score=34.03 Aligned_cols=83 Identities=10% Similarity=-0.088 Sum_probs=63.6
Q ss_pred EEEEeHHHHHHHHHHHHHH---hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccChHHHHHHHhccc
Q psy14342 17 GIKMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYR 93 (316)
Q Consensus 17 ~V~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ 93 (316)
.-.+|.+.+...+..+... .++.++|++..+++- ...++..++..+..|+..+..++.. .+.++...+++.+
T Consensus 45 ~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n--~~e~~~~~lA~~~~Gav~vpl~~~~---~~~~l~~~l~~~~ 119 (541)
T 1v25_A 45 VHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFN--HFRHLEAYFAVPGMGAVLHTANPRL---SPKEIAYILNHAE 119 (541)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCS--SHHHHHHHHHHHHTTCEEEECCTTS---CHHHHHHHHHHHT
T ss_pred CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC--cHHHHHHHHHHHhcCcEEEecCccc---CHHHHHHHHHhCC
Confidence 4578999888776655544 478899999998774 3466666889999999999887653 4677888999999
Q ss_pred eeeEEecccch
Q psy14342 94 VRDTFCSYGML 104 (316)
Q Consensus 94 ~t~~~~~~~~~ 104 (316)
+.++++.+...
T Consensus 120 ~~~vi~~~~~~ 130 (541)
T 1v25_A 120 DKVLLFDPNLL 130 (541)
T ss_dssp CSEEEECGGGH
T ss_pred CcEEEEChhHH
Confidence 99888766554
No 47
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=78.81 E-value=12 Score=34.05 Aligned_cols=81 Identities=11% Similarity=0.030 Sum_probs=62.2
Q ss_pred EEeHHHHHHHHHHHHHH---hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccChHHHHHHHhcccee
Q psy14342 19 KMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVR 95 (316)
Q Consensus 19 ~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~t 95 (316)
.+|.+.|...+..+... .++.++|++..+++-+ ..++..++..+..|+..+..++.. .+.++..++++.++.
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~--~~~~~~~lA~~~~Ga~~vpl~~~~---~~~~l~~il~~~~~~ 102 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKS--VEALVLYLATVRAGGVYLPLNTAY---TLHELDYFITDAEPK 102 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSC--HHHHHHHHHHHHTTCEEEECCTTC---CHHHHHHHHHHHCCS
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--HHHHHHHHHHHHcCcEEEecCCCC---CHHHHHHHHHhcCCc
Confidence 58999888776655554 4788999999987753 466666889999999999887653 467788899999999
Q ss_pred eEEecccch
Q psy14342 96 DTFCSYGML 104 (316)
Q Consensus 96 ~~~~~~~~~ 104 (316)
++++.....
T Consensus 103 ~vi~~~~~~ 111 (503)
T 4fuq_A 103 IVVCDPSKR 111 (503)
T ss_dssp EEEECGGGT
T ss_pred EEEECchhh
Confidence 887765543
No 48
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=78.67 E-value=11 Score=34.32 Aligned_cols=82 Identities=5% Similarity=-0.048 Sum_probs=63.5
Q ss_pred EEEeHHHHHHHHHHHHHH---hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccChHHHHHHHhccce
Q psy14342 18 IKMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 94 (316)
Q Consensus 18 V~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~ 94 (316)
-.+|.+.|...+..+... .++.++|++..+++- ...++..++..+..|+..+..++.. .+.+...++++.++
T Consensus 30 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~--~~~~~~~~lA~~~~Ga~~vpl~~~~---~~~~l~~~l~~~~~ 104 (509)
T 3ivr_A 30 VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQN--CSEMIELIGAVALIGAILLPVNYRL---NADEIAFVLGDGAP 104 (509)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCS--CHHHHHHHHHHHHTTCEEEECCTTS---CHHHHHHHHHHHCE
T ss_pred cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC--CHHHHHHHHHHHHhCCEEEecCCCC---CHHHHHHHHHhcCc
Confidence 468999888777665554 478899999998775 3466666889999999999887653 56778889999999
Q ss_pred eeEEecccch
Q psy14342 95 RDTFCSYGML 104 (316)
Q Consensus 95 t~~~~~~~~~ 104 (316)
.++++.....
T Consensus 105 ~~vi~~~~~~ 114 (509)
T 3ivr_A 105 SVVVAGTDYR 114 (509)
T ss_dssp EEEEECSTTH
T ss_pred eEEEECcchh
Confidence 9887766554
No 49
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=78.25 E-value=14 Score=33.79 Aligned_cols=81 Identities=15% Similarity=0.238 Sum_probs=61.5
Q ss_pred EEeHHHHHHHHHHHHHH---hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccChHHHHHHHhcccee
Q psy14342 19 KMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVR 95 (316)
Q Consensus 19 ~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~t 95 (316)
.+|.+.|...+..+... .++.++|++..+++-. ..++..++..+..|+..+..++.. .+.+....+++.++.
T Consensus 48 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~vpl~~~~---~~~~l~~~l~~~~~~ 122 (529)
T 2v7b_A 48 STTYGELEERARRFASALRTLGVHPEERILLVMLDT--VALPVAFLGALYAGVVPVVANTLL---TPADYVYMLTHSHAR 122 (529)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSS--THHHHHHHHHHHHTCEEEECCTTC---CHHHHHHHHHHHTCS
T ss_pred CccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--HHHHHHHHHHHHcCceEEecCccc---CHHHHHHHHhccCCe
Confidence 58998888776655554 4788999999987754 356666889999999999887653 467788888898988
Q ss_pred eEEecccch
Q psy14342 96 DTFCSYGML 104 (316)
Q Consensus 96 ~~~~~~~~~ 104 (316)
++++.....
T Consensus 123 ~vi~~~~~~ 131 (529)
T 2v7b_A 123 AVIASGALV 131 (529)
T ss_dssp EEEEEGGGH
T ss_pred EEEechhhh
Confidence 877766544
No 50
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=78.04 E-value=14 Score=34.29 Aligned_cols=84 Identities=8% Similarity=0.028 Sum_probs=63.6
Q ss_pred EEEEeHHHHHHHHHHHHHHh----cCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccChHHHHHHHhcc
Q psy14342 17 GIKMSHAAVTSLCRSMKLAC----ELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQY 92 (316)
Q Consensus 17 ~V~~t~~~l~~~~~~~~~~~----~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~ 92 (316)
...+|.+.+...+..+...+ ++.++|++..+++- ...++..++..+..|+..+..++.. .+.++...+++.
T Consensus 71 ~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n--~~e~~~~~lA~~~~Ga~~vpl~~~~---~~~~l~~~l~~~ 145 (570)
T 3c5e_A 71 ELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPR--VPEWWLVILGCIRAGLIFMPGTIQM---KSTDILYRLQMS 145 (570)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCS--CHHHHHHHHHHHHHTCEEEECCTTC---CHHHHHHHHHHH
T ss_pred eeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCC--CHHHHHHHHHHHHcCeEEEecCCCC---CHHHHHHHHHhc
Confidence 35789998887766655543 78899999998774 4466666889999999999887653 467788889999
Q ss_pred ceeeEEecccchh
Q psy14342 93 RVRDTFCSYGMLA 105 (316)
Q Consensus 93 ~~t~~~~~~~~~~ 105 (316)
++.++++......
T Consensus 146 ~~~~vi~~~~~~~ 158 (570)
T 3c5e_A 146 KAKAIVAGDEVIQ 158 (570)
T ss_dssp TCSEEEEETTTHH
T ss_pred CCeEEEechHHHH
Confidence 9988877665543
No 51
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=78.00 E-value=16 Score=33.42 Aligned_cols=82 Identities=11% Similarity=0.069 Sum_probs=62.7
Q ss_pred EEEeHHHHHHHHHHHHHH---hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccChHHHHHHHhccce
Q psy14342 18 IKMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 94 (316)
Q Consensus 18 V~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~ 94 (316)
..+|.+.|...+..+... .++.++|++..+++- ...++..++..+..|+..+..++.. .+.+...++++.++
T Consensus 42 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~--~~~~~~~~lA~~~~G~~~vpl~~~~---~~~~l~~~l~~~~~ 116 (517)
T 3r44_A 42 VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPN--SVEFCCLFYGAAKLGAVAVPINTRL---AAPEVSFILSDSGS 116 (517)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCS--SHHHHHHHHHHHHHTCEEEECCTTS---CHHHHHHHHHHHTC
T ss_pred ceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCC--CHHHHHHHHHHHHhCcEEEecCccc---CHHHHHHHHHhcCc
Confidence 478999888776665554 478899999999875 3466666889999999999887653 46778889999999
Q ss_pred eeEEecccch
Q psy14342 95 RDTFCSYGML 104 (316)
Q Consensus 95 t~~~~~~~~~ 104 (316)
.++++.....
T Consensus 117 ~~vi~~~~~~ 126 (517)
T 3r44_A 117 KVVIYGAPSA 126 (517)
T ss_dssp SEEEECGGGH
T ss_pred eEEEECCchH
Confidence 8877665543
No 52
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=78.00 E-value=13 Score=34.59 Aligned_cols=82 Identities=7% Similarity=-0.023 Sum_probs=63.0
Q ss_pred EEEEeHHHHHHHHHHHHHH---hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccChHHHHHHHhccc
Q psy14342 17 GIKMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYR 93 (316)
Q Consensus 17 ~V~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ 93 (316)
...+|.+.|...+..++.. .++.++|++..+++-. ..++..++..+..|+..+...+.. .+..+...+++.+
T Consensus 84 ~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~--~e~~~~~lA~~~~Gav~vpl~~~~---~~~~l~~~l~~~~ 158 (580)
T 3etc_A 84 EKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSR--YDFWYCMLGLHKLGAIAVPATHML---KTRDIVYRIEKAG 158 (580)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTC--THHHHHHHHHHHHTCEEEECCTTC---CHHHHHHHHHHHT
T ss_pred EeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--HHHHHHHHHHHhCCEEEEeCCccC---CHHHHHHHHHhcC
Confidence 4578999887776655544 4788999999998754 466666889999999999877653 5677888999999
Q ss_pred eeeEEecccc
Q psy14342 94 VRDTFCSYGM 103 (316)
Q Consensus 94 ~t~~~~~~~~ 103 (316)
+.++++....
T Consensus 159 ~~~ii~~~~~ 168 (580)
T 3etc_A 159 LKMIVCIAED 168 (580)
T ss_dssp CCEEEEESST
T ss_pred CCEEEEecch
Confidence 9887776553
No 53
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=75.62 E-value=34 Score=30.55 Aligned_cols=86 Identities=9% Similarity=0.108 Sum_probs=63.0
Q ss_pred EEEEeHHHHHHHHHHHHHHh---cCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccChHHHHHHHhccc
Q psy14342 17 GIKMSHAAVTSLCRSMKLAC---ELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYR 93 (316)
Q Consensus 17 ~V~~t~~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ 93 (316)
...+|.+.|...+..+...+ +. ++|++..+++- ...++..++..+..|+..+..++......+.+...++++.+
T Consensus 56 ~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n--~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~ 132 (480)
T 3t5a_A 56 AITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQ--GLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSS 132 (480)
T ss_dssp EEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCS--SHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHC
T ss_pred eEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCC--cHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCC
Confidence 46899999988877776655 43 78999888764 44666668899999999998876221113456778899999
Q ss_pred eeeEEecccchh
Q psy14342 94 VRDTFCSYGMLA 105 (316)
Q Consensus 94 ~t~~~~~~~~~~ 105 (316)
+.++++......
T Consensus 133 ~~~vi~~~~~~~ 144 (480)
T 3t5a_A 133 PVAILTTSSAVD 144 (480)
T ss_dssp CSEEEECTTTHH
T ss_pred CCEEEeChhHHH
Confidence 998877766543
No 54
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=74.29 E-value=14 Score=34.11 Aligned_cols=79 Identities=10% Similarity=0.129 Sum_probs=60.7
Q ss_pred EEeHHHHHHHHHHHHHH---hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccChHHHHHHHhcccee
Q psy14342 19 KMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVR 95 (316)
Q Consensus 19 ~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~t 95 (316)
.+|.+.+...+..+... .++.++|++..+++- ...++..++..+..|+..+..++.. .+.++..++++.++.
T Consensus 100 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n--~~~~~~~~lA~~~~G~~~vpl~~~~---~~~~l~~~l~~~~~~ 174 (570)
T 4gr5_A 100 ELTYGALNERANRLAHRLVGLGVAPGTLVGVHLER--GFDMVVALLAVLKAGGGYTMLDPQF---PVERLALSLEDTGAP 174 (570)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCS--SHHHHHHHHHHHHTTCEEEECCTTS---CHHHHHHHHHHHTCS
T ss_pred cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCC--CHHHHHHHHHHHHHCCEEEEcCCCC---hHHHHHHHHHhcCCC
Confidence 58898887776655544 478899999998774 4466666889999999999887653 467788899999988
Q ss_pred eEEeccc
Q psy14342 96 DTFCSYG 102 (316)
Q Consensus 96 ~~~~~~~ 102 (316)
++++...
T Consensus 175 ~~i~~~~ 181 (570)
T 4gr5_A 175 LLVTSRP 181 (570)
T ss_dssp EEEECTT
T ss_pred EEEecch
Confidence 7776544
No 55
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=73.99 E-value=23 Score=33.40 Aligned_cols=81 Identities=10% Similarity=-0.013 Sum_probs=61.9
Q ss_pred EEEEeHHHHHHHHHHHHHH---hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccChHHHHHHHhccc
Q psy14342 17 GIKMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYR 93 (316)
Q Consensus 17 ~V~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ 93 (316)
.-.+|.+.|...+..+... .++.++|++..++|.. ..++..++..+..|+..+...+.. .+.++...+++.+
T Consensus 105 ~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~--~e~vva~lA~~~~Gav~vpl~~~~---~~~~l~~~l~~~~ 179 (652)
T 1pg4_A 105 SKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMV--PEAAVAMLACARIGAVHSVIFGGF---SPEAVAGCIIDSS 179 (652)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSS--HHHHHHHHHHHHHTCEEEECCTTS---CHHHHHHHHHHHT
T ss_pred eeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCC--HHHHHHHHHHHHcCcEEEecCCCC---CHHHHHHHHHhcC
Confidence 3578999887776655543 5789999999998754 456666889999999998887653 4678888999999
Q ss_pred eeeEEeccc
Q psy14342 94 VRDTFCSYG 102 (316)
Q Consensus 94 ~t~~~~~~~ 102 (316)
+.++++...
T Consensus 180 ~~~li~~~~ 188 (652)
T 1pg4_A 180 SRLVITADE 188 (652)
T ss_dssp CSEEEEESE
T ss_pred CCEEEEcCc
Confidence 888776544
No 56
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=73.82 E-value=15 Score=33.52 Aligned_cols=79 Identities=10% Similarity=0.022 Sum_probs=60.7
Q ss_pred EEeHHHHHHHHHHHHHH---hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccChHHHHHHHhcccee
Q psy14342 19 KMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVR 95 (316)
Q Consensus 19 ~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~t 95 (316)
.+|.+.+...+..+... .++.++|++..+++-. ..++..++..+..|+..+..++.. .+.++..+++..++.
T Consensus 29 ~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~--~~~~~~~lA~~~~G~v~vpl~~~~---~~~~l~~il~~~~~~ 103 (521)
T 3l8c_A 29 RRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQT--YDMLATFVALTKSGHAYIPVDVHS---APERILAIIEIAKPS 103 (521)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSS--HHHHHHHHHHHHTTCCEEEEETTS---CHHHHHHHHHHSCCS
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCC--HHHHHHHHHHHHhCCEEEecCccc---cHHHHHHHHHhCCCC
Confidence 58999888776665554 4788999999887753 466666889999999999887653 567888899999998
Q ss_pred eEEeccc
Q psy14342 96 DTFCSYG 102 (316)
Q Consensus 96 ~~~~~~~ 102 (316)
++++...
T Consensus 104 ~ii~~~~ 110 (521)
T 3l8c_A 104 LIIAIEE 110 (521)
T ss_dssp EEEESSC
T ss_pred EEEecCc
Confidence 8776543
No 57
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=73.22 E-value=17 Score=32.92 Aligned_cols=80 Identities=10% Similarity=0.170 Sum_probs=63.1
Q ss_pred EEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccChHHHHHHHhccceeeEE
Q psy14342 19 KMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTF 98 (316)
Q Consensus 19 ~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~t~~~ 98 (316)
.+|.+.+...+..+...+.-.++|++..+++- ...++..++..+..|+..+..++.. .+......+++.++.+++
T Consensus 26 ~~Ty~eL~~~~~~lA~~L~~~~gd~V~i~~~n--~~e~~~~~lA~~~~Gav~vpl~~~~---~~~~l~~~l~~~~~~~li 100 (501)
T 3ipl_A 26 SYTYQNLYCEASLLAKRLKAYQQSRVGLYIDN--SIQSIILIHACWLANIEIAMINTRL---TPNEMTNQMRSIDVQLIF 100 (501)
T ss_dssp EEEHHHHHHHHHHHHHHHHTTCCSEEEEECCS--SHHHHHHHHHHHHTTCEEEECCTTS---CHHHHHHHHHHTTCCEEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCEEEEEcCC--CHHHHHHHHHHHHcCCEEEecCccC---CHHHHHHHHHhcCCCEEE
Confidence 68999998888877777654489999998874 3466666889999999999887653 567888899999999887
Q ss_pred ecccc
Q psy14342 99 CSYGM 103 (316)
Q Consensus 99 ~~~~~ 103 (316)
+....
T Consensus 101 ~~~~~ 105 (501)
T 3ipl_A 101 CTLPL 105 (501)
T ss_dssp ESSCC
T ss_pred Ecccc
Confidence 76543
No 58
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=72.81 E-value=19 Score=33.24 Aligned_cols=80 Identities=5% Similarity=0.051 Sum_probs=60.8
Q ss_pred EEeHHHHHHHHHHHHHH---hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccChHHHHHHHhcccee
Q psy14342 19 KMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVR 95 (316)
Q Consensus 19 ~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~t 95 (316)
.+|.+.+...+..+... .++.++|++..+++- ...++..++..+..|+..+..++.. .+.++..++++.++.
T Consensus 64 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n--~~e~~~~~lA~~~~Gav~vpl~~~~---~~~~l~~il~~~~~~ 138 (563)
T 1amu_A 64 QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEK--SIDLFIGILAVLKAGGAYVPIDIEY---PKERIQYILDDSQAR 138 (563)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCS--SHHHHHHHHHHHHTTCEEEECCTTS---CHHHHHHHHHHHTCS
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCC--CHHHHHHHHHHHHhCCEEEEeCCCC---cHHHHHHHHHhcCCC
Confidence 68998887776655544 478899999988774 3466666889999999999887653 466788889999988
Q ss_pred eEEecccc
Q psy14342 96 DTFCSYGM 103 (316)
Q Consensus 96 ~~~~~~~~ 103 (316)
++++....
T Consensus 139 ~li~~~~~ 146 (563)
T 1amu_A 139 MLLTQKHL 146 (563)
T ss_dssp EEEECGGG
T ss_pred EEEEcCch
Confidence 77765543
No 59
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=72.61 E-value=17 Score=32.93 Aligned_cols=77 Identities=13% Similarity=0.185 Sum_probs=59.5
Q ss_pred EEEeHHHHHHHHHHHHHH---hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccChHHHHHHHhccce
Q psy14342 18 IKMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 94 (316)
Q Consensus 18 V~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~ 94 (316)
..+|.+.|...+..+... .++.++|++..+++-. ..++..++..+..|+..+..++.. .+.++..++++.++
T Consensus 28 ~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~vpl~~~~---~~~~l~~~l~~~~~ 102 (504)
T 1t5h_X 28 LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNS--ADVVIAILALHRLGAVPALLNPRL---KSAELAELIKRGEM 102 (504)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSC--HHHHHHHHHHHHHTCEEEEECTTS---CHHHHHHHHHHTTC
T ss_pred ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--HHHHHHHHHHHHhCcEEEecCCcc---ChHHHHHHHhhcCC
Confidence 478999888776655554 4788999999987743 466666889999999999887653 46677888888888
Q ss_pred eeEEe
Q psy14342 95 RDTFC 99 (316)
Q Consensus 95 t~~~~ 99 (316)
..+++
T Consensus 103 ~~~i~ 107 (504)
T 1t5h_X 103 TAAVI 107 (504)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 87776
No 60
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=71.51 E-value=1.7 Score=40.90 Aligned_cols=26 Identities=12% Similarity=0.034 Sum_probs=22.2
Q ss_pred eEEEEeccCCC-CCceEEEEeHHHHHH
Q psy14342 2 LAYLDFSVSTT-GMLAGIKMSHAAVTS 27 (316)
Q Consensus 2 ~a~i~~TSGTT-G~PK~V~~t~~~l~~ 27 (316)
+.++.-||||| |+||-+.+|.+.+..
T Consensus 101 i~~f~~SSGTT~gk~K~IP~t~~~l~~ 127 (609)
T 4b2g_A 101 ISEFLTSSGTSAGERKLMPTIQEELDR 127 (609)
T ss_dssp CCEEEEEEEEETTEEEEEEECTTHHHH
T ss_pred CCeEEeCCCCCCCCceeeecCHHHHHH
Confidence 35788999999 789999999997755
No 61
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=70.72 E-value=30 Score=32.71 Aligned_cols=81 Identities=4% Similarity=-0.056 Sum_probs=62.1
Q ss_pred EEEeHHHHHHHHHHHHH----HhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccChHHHHHHHhccc
Q psy14342 18 IKMSHAAVTSLCRSMKL----ACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYR 93 (316)
Q Consensus 18 V~~t~~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ 93 (316)
..+|.+.|...+..+.. ..++.++|++..++|.. ..++..++..+..|+..+.+.+.. .+.++...+++.+
T Consensus 112 ~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~--~e~v~a~lA~~~~Gav~vpl~~~~---~~~~l~~~l~~~~ 186 (663)
T 1ry2_A 112 YSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMV--PEAIITLLAISRIGAIHSVVFAGF---SSNSLRDRINDGD 186 (663)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSS--HHHHHHHHHHHHTTCEEEECCTTS---CHHHHHHHHHHHT
T ss_pred EEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCC--HHHHHHHHHHHHcCCEEEeeCCCC---CHHHHHHHHHhcC
Confidence 47899988776655544 35678999999998854 466666889999999998887653 4677888999999
Q ss_pred eeeEEecccc
Q psy14342 94 VRDTFCSYGM 103 (316)
Q Consensus 94 ~t~~~~~~~~ 103 (316)
+.++++....
T Consensus 187 ~~~li~~~~~ 196 (663)
T 1ry2_A 187 SKVVITTDES 196 (663)
T ss_dssp CSEEEEESBC
T ss_pred CeEEEEcccc
Confidence 9988776554
No 62
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=69.91 E-value=17 Score=33.61 Aligned_cols=84 Identities=14% Similarity=0.109 Sum_probs=59.7
Q ss_pred EEEEeHHHHHHHHHHHHHH---hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccChHHHHHHHhccc
Q psy14342 17 GIKMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYR 93 (316)
Q Consensus 17 ~V~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ 93 (316)
.-.+|.+.|...+..+... .++.++|++..+++-. ..++..++..+..|+..+..++............+++..+
T Consensus 38 ~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~ 115 (590)
T 3kxw_A 38 EETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPG--LPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSK 115 (590)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSS--HHHHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHC
T ss_pred eEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--hhHHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCC
Confidence 4578999888776665554 4788999999987753 4666668899999999998876421112345667788888
Q ss_pred eeeEEeccc
Q psy14342 94 VRDTFCSYG 102 (316)
Q Consensus 94 ~t~~~~~~~ 102 (316)
+.++++...
T Consensus 116 ~~~vi~~~~ 124 (590)
T 3kxw_A 116 PVIVLMIAD 124 (590)
T ss_dssp CSEEEECHH
T ss_pred CCEEEeCHH
Confidence 877665544
No 63
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=69.60 E-value=20 Score=32.92 Aligned_cols=80 Identities=8% Similarity=-0.011 Sum_probs=60.4
Q ss_pred EEEeHHHHHHHHHHHHHH---hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccChHHHHHHHhccce
Q psy14342 18 IKMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 94 (316)
Q Consensus 18 V~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~ 94 (316)
-.+|.+.|...+..+... .++.++|++..+++- ...++..++..+..|+..+...+.. .+.+...++++.++
T Consensus 49 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~--~~~~~~~~lA~~~~Ga~~vpl~~~~---~~~~l~~~l~~~~~ 123 (539)
T 1mdb_A 49 THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPN--IKEFFEVIFALFRLGALPVFALPSH---RSSEITYFCEFAEA 123 (539)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCS--SHHHHHHHHHHHHHTCEEEECCTTC---CHHHHHHHHHHTTC
T ss_pred CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC--cHHHHHHHHHHHHcCeEEecCCCCC---CHHHHHHHHHhCCC
Confidence 368999887776655554 478899999988774 4466666889999999988877653 46677888899998
Q ss_pred eeEEeccc
Q psy14342 95 RDTFCSYG 102 (316)
Q Consensus 95 t~~~~~~~ 102 (316)
.++++...
T Consensus 124 ~~vi~~~~ 131 (539)
T 1mdb_A 124 AAYIIPDA 131 (539)
T ss_dssp SEEEEESE
T ss_pred CEEEeccc
Confidence 87776554
No 64
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=68.98 E-value=20 Score=32.98 Aligned_cols=80 Identities=11% Similarity=-0.024 Sum_probs=60.1
Q ss_pred EEEeHHHHHHHHHHHHHH---hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccChHHHHHHHhccce
Q psy14342 18 IKMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 94 (316)
Q Consensus 18 V~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~ 94 (316)
-.+|.+.|...+..+... .++.++|++...+|- ...++..++..+..|+..+..++.. .+.++...+++.++
T Consensus 54 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n--~~~~~~~~lA~~~~Gav~vpl~~~~---~~~~l~~~l~~~~~ 128 (544)
T 3o83_A 54 RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPN--VAEFYIVFFALLKAGVVVLNALYSH---RQYELNAFIKQIQP 128 (544)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCS--SHHHHHHHHHHHHHTCEEEECCTTC---CHHHHHHHHHHHCC
T ss_pred CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC--CHHHHHHHHHHHHhCcEEecCCCCC---CHHHHHHHHHhcCe
Confidence 368898887776655554 478899999988764 3466666889999999888776552 46678888999998
Q ss_pred eeEEeccc
Q psy14342 95 RDTFCSYG 102 (316)
Q Consensus 95 t~~~~~~~ 102 (316)
.++++...
T Consensus 129 ~~li~~~~ 136 (544)
T 3o83_A 129 KLLIGSRQ 136 (544)
T ss_dssp SEEEEETT
T ss_pred eEEEEccc
Confidence 87776554
No 65
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=68.45 E-value=24 Score=32.04 Aligned_cols=77 Identities=10% Similarity=-0.043 Sum_probs=59.0
Q ss_pred EEeHHHHHHHHHHHHHH---hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccChHHHHHHHhcccee
Q psy14342 19 KMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVR 95 (316)
Q Consensus 19 ~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~t 95 (316)
.+|.+.+...+..+... .++.++|++..+++-. ..++..++..+..|+..+..++.. .+.+...++++.++.
T Consensus 26 ~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~--~e~~~~~la~~~~G~v~vpl~~~~---~~~~l~~il~~~~~~ 100 (512)
T 3fce_A 26 KITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQ--PEMIINFLGCVKAGHAYIPVDLSI---PADRVQRIAENSGAK 100 (512)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSC--HHHHHHHHHHHHTTCCEEEEETTS---CHHHHHHHHHHSCCC
T ss_pred eEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCC--HHHHHHHHHHHHhCCEEEeeCCCC---cHHHHHHHHHhcCCC
Confidence 58999888776665554 4788999998887653 466666889999999999887653 467788899999988
Q ss_pred eEEec
Q psy14342 96 DTFCS 100 (316)
Q Consensus 96 ~~~~~ 100 (316)
++++.
T Consensus 101 ~~i~~ 105 (512)
T 3fce_A 101 LLLSA 105 (512)
T ss_dssp EEEES
T ss_pred EEEec
Confidence 77664
No 66
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=66.66 E-value=29 Score=34.57 Aligned_cols=82 Identities=13% Similarity=0.120 Sum_probs=63.5
Q ss_pred EEEeHHHHHHHHHHHHHH---hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccChHHHHHHHhccce
Q psy14342 18 IKMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 94 (316)
Q Consensus 18 V~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~ 94 (316)
-.+|.+.|...+..+... .++.++|++..+++-+ ..++..++..+..|+..+..+|.. .+.+....+++.++
T Consensus 87 ~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns--~e~~v~~lA~~~~Ga~~vpl~~~~---~~~~l~~~l~~~~~ 161 (979)
T 3tsy_A 87 HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNC--PEFVLSFLAASFRGATATAANPFF---TPAEIAKQAKASNT 161 (979)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSC--HHHHHHHHHHHHHTCEEEEECTTS---CHHHHHHHHHHHTE
T ss_pred cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCC--HHHHHHHHHHHHcCCEEEeeCCCC---CHHHHHHHHHHcCC
Confidence 368999887766655544 4788999999998754 466666889999999999888753 56788889999999
Q ss_pred eeEEecccch
Q psy14342 95 RDTFCSYGML 104 (316)
Q Consensus 95 t~~~~~~~~~ 104 (316)
.++++.....
T Consensus 162 ~~vi~~~~~~ 171 (979)
T 3tsy_A 162 KLIITEARYV 171 (979)
T ss_dssp EEEEECSTTT
T ss_pred eEEEEChHHH
Confidence 9888766544
No 67
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=66.42 E-value=3.1 Score=38.97 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=21.4
Q ss_pred EEEEeccCCC-CCceEEEEeHHHHHH
Q psy14342 3 AYLDFSVSTT-GMLAGIKMSHAAVTS 27 (316)
Q Consensus 3 a~i~~TSGTT-G~PK~V~~t~~~l~~ 27 (316)
.+..-||||| |++|-+..|.+.+..
T Consensus 96 ~~F~~SSGTT~g~~K~IP~T~e~l~~ 121 (581)
T 4eql_A 96 TGFLLSSGTSGGAQKMMPWNNKYLDN 121 (581)
T ss_dssp CEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred CeEEeCCCCCCCCccccccCHHHHHH
Confidence 4678899999 689999999997754
No 68
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=65.88 E-value=3 Score=38.97 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=21.5
Q ss_pred EEEEeccCCC-CCceEEEEeHHHHHH
Q psy14342 3 AYLDFSVSTT-GMLAGIKMSHAAVTS 27 (316)
Q Consensus 3 a~i~~TSGTT-G~PK~V~~t~~~l~~ 27 (316)
.+..-||||| |++|-+..|.+.+..
T Consensus 101 ~~f~~SSGTT~gk~K~IP~T~~~l~~ 126 (581)
T 4epl_A 101 PAISLSSGTSQGRPKFIPFTDELMEN 126 (581)
T ss_dssp SEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred ceEEecCCCCCCCccccccCHHHHHH
Confidence 4678899999 789999999997754
No 69
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=64.04 E-value=31 Score=32.27 Aligned_cols=80 Identities=10% Similarity=0.011 Sum_probs=60.4
Q ss_pred EEeHHHHHHHHHHHHHH---hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccChHHHHHHHhcccee
Q psy14342 19 KMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVR 95 (316)
Q Consensus 19 ~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~t 95 (316)
.+|.+.|...+..+... .++.++|++..+++- ...++..++..+..|+..+..++.. .+.+...++++.++.
T Consensus 50 ~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~--s~~~vva~lA~l~aG~~~vpl~~~~---~~~~l~~~l~~~~~~ 124 (617)
T 3rg2_A 50 QLSYRELNQAADNLACSLRRQGIKPGETALVQLGN--VAELYITFFALLKLGVAPVLALFSH---QRSELNAYASQIEPA 124 (617)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCS--SHHHHHHHHHHHHHTCEEEEECTTC---CHHHHHHHHHHHCCS
T ss_pred eEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC--cHHHHHHHHHHHhcCeEEccCCccc---cHHHHHHHHhhcCce
Confidence 58888887776665554 478899999998774 4466666899999999988877653 456778888888888
Q ss_pred eEEecccc
Q psy14342 96 DTFCSYGM 103 (316)
Q Consensus 96 ~~~~~~~~ 103 (316)
++++....
T Consensus 125 ~vl~~~~~ 132 (617)
T 3rg2_A 125 LLIADRQH 132 (617)
T ss_dssp EEEEETTS
T ss_pred EEEecccc
Confidence 77765543
No 70
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=63.99 E-value=48 Score=30.35 Aligned_cols=86 Identities=9% Similarity=0.028 Sum_probs=61.4
Q ss_pred EEEEeHHHHHHHHHHHHHH---hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccC----hHHHHHHH
Q psy14342 17 GIKMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVN----PALWLSAV 89 (316)
Q Consensus 17 ~V~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~----~~~~~~~~ 89 (316)
.-.+|.+.|...+..+... .++.++|++..+++-. ..++..++..+..|+..+..++.....+ +.+...++
T Consensus 47 ~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l 124 (576)
T 3gqw_A 47 EDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETS--SEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLL 124 (576)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSS--HHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHH
T ss_pred eeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--HHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHH
Confidence 3578999888776665554 4788999999998753 4666668899999999998865421111 35667788
Q ss_pred hccceeeEEecccch
Q psy14342 90 SQYRVRDTFCSYGML 104 (316)
Q Consensus 90 ~~~~~t~~~~~~~~~ 104 (316)
+..++..+++.....
T Consensus 125 ~~~~~~~ii~~~~~~ 139 (576)
T 3gqw_A 125 ASCQPAAIITGDEWL 139 (576)
T ss_dssp HHHCCSEEEECGGGH
T ss_pred HhcCCCEEEecHHHH
Confidence 888888777665543
No 71
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=63.69 E-value=36 Score=31.87 Aligned_cols=77 Identities=13% Similarity=0.049 Sum_probs=58.8
Q ss_pred EEeHHHHHHHHHHHHHH---hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccChHHHHHHHhcccee
Q psy14342 19 KMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVR 95 (316)
Q Consensus 19 ~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~t 95 (316)
.+|.+.|...+..+... .++.++|++..+++- ...++..++..+..|+..+..+|.. .+.+...++++.++.
T Consensus 52 ~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~--s~~~vva~lailkaGa~~vpld~~~---p~~~l~~il~~~~~~ 126 (620)
T 4dg8_A 52 SVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEY--SRESITCLLAILLSGHHYLYIDLKQ---PAAWNAELCRQVDCR 126 (620)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSS--CHHHHHHHHHHHHTTCEEEECCTTS---CHHHHHHHHHHHTEE
T ss_pred cCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCC--CHHHHHHHHHHHHhCCEEEeeCccC---hHHHHHHHHHhCCCc
Confidence 58888887776655554 478899999998774 4466666899999999999887653 456777888898888
Q ss_pred eEEec
Q psy14342 96 DTFCS 100 (316)
Q Consensus 96 ~~~~~ 100 (316)
+++..
T Consensus 127 ~vl~~ 131 (620)
T 4dg8_A 127 LILDC 131 (620)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 77644
No 72
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=63.08 E-value=25 Score=22.94 Aligned_cols=47 Identities=21% Similarity=0.231 Sum_probs=31.8
Q ss_pred hHhHHHHHHHhccccceeEEEeeCCcEEEEEEecCCchhhcchHHHHHHHHH
Q psy14342 216 PIDIENSVMRAHKKIAECAVFTWTNLLVVVVELDGNESEALDLVPLVTNAVL 267 (316)
Q Consensus 216 p~eIE~~l~~~~p~v~~~~v~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~l~ 267 (316)
..++++.|.+ +|.|.+|..+.-...+.+.+..+ +.+++.+.+.+.+.
T Consensus 15 ~~~~~~~l~~-~peV~e~~~vtG~~D~ll~v~~~----d~~~l~~~i~~~l~ 61 (83)
T 2cvi_A 15 EREVMEKLLA-MPEVKEAYVVYGEYDLIVKVETD----TLKDLDQFITEKIR 61 (83)
T ss_dssp HHHHHHHHHT-STTEEEEEECBSSCSEEEEEEES----SHHHHHHHHHTTGG
T ss_pred HHHHHHHHhC-CCCeeEEEEEcccCCEEEEEEEC----CHHHHHHHHHHHhc
Confidence 4789999999 99999988876655555555443 23445555544444
No 73
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=62.85 E-value=54 Score=30.03 Aligned_cols=78 Identities=15% Similarity=0.057 Sum_probs=58.4
Q ss_pred EEEeHHHHHHHHHHHHHHh---cCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccChHHHHHHHhccce
Q psy14342 18 IKMSHAAVTSLCRSMKLAC---ELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 94 (316)
Q Consensus 18 V~~t~~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~ 94 (316)
-.+|.+.|...+..+...+ ++ ++|++..+++-. ..++..++..+..|+..+..++.. .+.++..++++.++
T Consensus 54 ~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~--~~~~~~~lA~~~~Gav~vpl~~~~---~~~~l~~~l~~~~~ 127 (562)
T 3ite_A 54 EDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRS--LIAFAIIVGIMKSGNTYVPIEAGL---PNDRKSFLLRDSRA 127 (562)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSC--HHHHHHHHHHHHTTCEEEECCTTS---CHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCC--HHHHHHHHHHHHhCCEEEecCCcC---HHHHHHHHHHhcCC
Confidence 5789998887766655543 56 689998887753 466666889999999999887653 46677888888888
Q ss_pred eeEEecc
Q psy14342 95 RDTFCSY 101 (316)
Q Consensus 95 t~~~~~~ 101 (316)
.++++..
T Consensus 128 ~~~i~~~ 134 (562)
T 3ite_A 128 AMAFVCD 134 (562)
T ss_dssp SEEEECT
T ss_pred CEEEEcc
Confidence 8766643
No 74
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=55.05 E-value=46 Score=30.06 Aligned_cols=78 Identities=12% Similarity=-0.042 Sum_probs=58.5
Q ss_pred EEEeHHHHHHHHHHHHHHh----cCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccChHHHHHHHhccc
Q psy14342 18 IKMSHAAVTSLCRSMKLAC----ELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYR 93 (316)
Q Consensus 18 V~~t~~~l~~~~~~~~~~~----~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ 93 (316)
-.+|.+.|...+..+...+ +..++|++....+- ...++..++..+..|+..+..++.. .+.++..++++.+
T Consensus 25 ~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n--~~~~~~~~lA~~~~G~~~vpl~~~~---~~~~l~~~l~~~~ 99 (511)
T 3e7w_A 25 QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHM--EPHMIVSFLGSVKAGHPYIPVDLSI---PSERIAKIIESSG 99 (511)
T ss_dssp EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESS--CHHHHHHHHHHHHHTCCEEEEETTS---CHHHHHHHHHHHT
T ss_pred ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecC--CHHHHHHHHHHHHhCCEEEecCCCC---hHHHHHHHHHhCC
Confidence 4689999988777766655 34567888887664 3456666889999999999887653 5677888999999
Q ss_pred eeeEEec
Q psy14342 94 VRDTFCS 100 (316)
Q Consensus 94 ~t~~~~~ 100 (316)
+.+++..
T Consensus 100 ~~~li~~ 106 (511)
T 3e7w_A 100 AELLIHA 106 (511)
T ss_dssp CCEEEES
T ss_pred CCEEEec
Confidence 9877763
No 75
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=53.08 E-value=32 Score=22.19 Aligned_cols=47 Identities=23% Similarity=0.189 Sum_probs=31.5
Q ss_pred hHhHHHHHHHhccccceeEEEeeCCcEEEEEEecCCchhhcchHHHHHHHHH
Q psy14342 216 PIDIENSVMRAHKKIAECAVFTWTNLLVVVVELDGNESEALDLVPLVTNAVL 267 (316)
Q Consensus 216 p~eIE~~l~~~~p~v~~~~v~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~l~ 267 (316)
..++++.|.+ +|.|.+|..+.-+..+.+.+... +.+++.+.+.+.+.
T Consensus 15 ~~~~~~~l~~-~peV~~~~~vtG~~d~l~~v~~~----d~~~l~~~~~~~l~ 61 (83)
T 2zbc_A 15 EDEVFERLKS-MSEVTEVHVVYGVYDIVVKVEAD----SMDKLKDFVTNTIR 61 (83)
T ss_dssp HHHHHHHHTT-CTTEEEEEECSSSCSEEEEEECS----SHHHHHHHHHHTGG
T ss_pred HHHHHHHHhC-CCCeEEEEEEeccCCEEEEEEEC----CHHHHHHHHHHHhc
Confidence 4789999999 99999988876655555555443 22445555544555
No 76
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=50.49 E-value=48 Score=29.99 Aligned_cols=78 Identities=9% Similarity=0.090 Sum_probs=57.2
Q ss_pred EEEeHHHHHHHHHHHHHHhcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccChHHHHHHHhccceeeE
Q psy14342 18 IKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDT 97 (316)
Q Consensus 18 V~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~t~~ 97 (316)
-.+|.+.|...+..+...+ ..+|++..+++- ...++..++..+..|+..+..++.. .+.+...++++.++.++
T Consensus 47 ~~~Ty~eL~~~~~~~A~~L--~~~~~V~i~~~~--~~~~~~~~la~~~~Ga~~vpl~~~~---~~~~l~~il~~~~~~~v 119 (505)
T 3nyq_A 47 RSLTYAELAAAAGATAGRI--GGAGRVAVWATP--AMETGVAVVAALLAGVAAVPLNPKS---GDKELAHILSDSAPSLV 119 (505)
T ss_dssp EEEEHHHHHHHHHHHHTTC--C---CEEEECCS--SHHHHHHHHHHHHHTCCEEEECTTC---CHHHHHHHHHHHCCSEE
T ss_pred eeeeHHHHHHHHHHHHhhc--cCCCEEEEEcCC--CHHHHHHHHHHHHhCCEEEEcCCCC---CHHHHHHHHHHCCCCEE
Confidence 3688999988877766544 457888888764 4466666899999999999887753 46778889999999887
Q ss_pred Eeccc
Q psy14342 98 FCSYG 102 (316)
Q Consensus 98 ~~~~~ 102 (316)
++...
T Consensus 120 i~~~~ 124 (505)
T 3nyq_A 120 LAPPD 124 (505)
T ss_dssp EECTT
T ss_pred EECCc
Confidence 76543
No 77
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=43.82 E-value=82 Score=32.48 Aligned_cols=79 Identities=9% Similarity=0.029 Sum_probs=60.1
Q ss_pred EEeHHHHHHHHHHHHHH---hcCCCCCceEEecCCcCChhhhHHHHhhhhcCceeeeeCCcccccChHHHHHHHhcccee
Q psy14342 19 KMSHAAVTSLCRSMKLA---CELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVR 95 (316)
Q Consensus 19 ~~t~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~t 95 (316)
.+|.+.|...+..+... .++.++|++..+++- ...++..++..+..|+..+..+|.. .+.+...++++.++.
T Consensus 489 ~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~--s~~~vv~~lailkaG~~~vpldp~~---p~~rl~~il~~~~~~ 563 (1304)
T 2vsq_A 489 TLSYRELDEEANRIARRLQKHGAGKGSVVALYTKR--SLELVIGILGVLKAGAAYLPVDPKL---PEDRISYMLADSAAA 563 (1304)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCS--SHHHHHHHHHHHHTTCEEEECCTTS---CHHHHHHHHHHHTCC
T ss_pred eEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCC--CHHHHHHHHHHHHHCCEEEEECCCC---HHHHHHHHHHHcCCC
Confidence 57888887766555544 478899999888764 4567777899999999999887753 456788889999988
Q ss_pred eEEeccc
Q psy14342 96 DTFCSYG 102 (316)
Q Consensus 96 ~~~~~~~ 102 (316)
++++...
T Consensus 564 ~vl~~~~ 570 (1304)
T 2vsq_A 564 CLLTHQE 570 (1304)
T ss_dssp EEEECST
T ss_pred EEEECcc
Confidence 7776544
No 78
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=36.55 E-value=42 Score=22.25 Aligned_cols=33 Identities=21% Similarity=0.190 Sum_probs=25.2
Q ss_pred hHhHHHHHHHhccccceeEEEeeCCcEEEEEEec
Q psy14342 216 PIDIENSVMRAHKKIAECAVFTWTNLLVVVVELD 249 (316)
Q Consensus 216 p~eIE~~l~~~~p~v~~~~v~~~~~~~~~~v~~~ 249 (316)
..++++.|.+ +|.|.+|..+.-...+.+.+...
T Consensus 15 ~~~~~~~l~~-~peV~~~~~vtG~~D~ll~v~~~ 47 (92)
T 2djw_A 15 VQALGEAIAE-LPQVAEVYSVTGPYDLVALVRLK 47 (92)
T ss_dssp HHHHHHHHTT-STTEEEEEEESSSSSEEEEEEES
T ss_pred HHHHHHHHhc-CCCeEEEEEeecCCCEEEEEEEC
Confidence 5789999999 99999988887655555555544
No 79
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=28.29 E-value=1.7e+02 Score=21.17 Aligned_cols=51 Identities=8% Similarity=0.008 Sum_probs=32.2
Q ss_pred HhHHHHHHHhccccceeEEEeeCCcEEEEEEe-cCCchhhcchHHHHHHHHHHhcCe
Q psy14342 217 IDIENSVMRAHKKIAECAVFTWTNLLVVVVEL-DGNESEALDLVPLVTNAVLEEHHL 272 (316)
Q Consensus 217 ~eIE~~l~~~~p~v~~~~v~~~~~~~~~~v~~-~~~~~~~~~l~~~~~~~l~~~~~~ 272 (316)
.++++.|.+ +|.|.+|..+.-...+.+.+.. . +.+++.+.+.+.+....+.
T Consensus 83 ~~~~~~l~~-~peV~~~~~vtG~~d~~~~v~~~~----d~~~l~~~~~~~l~~~~gV 134 (151)
T 2dbb_A 83 DKVISEISD-IEYVKSVEKGVGRYNIIVRLLLPK----DIKDAENLISEFLQRIKNA 134 (151)
T ss_dssp HHHHHHHTT-CTTEEEEEEEESSCSEEEEEEEES----SHHHHHHHHHHHHHTCCSE
T ss_pred HHHHHHHHc-CCCeEEEeEecCCCCEEEEEEEcC----CHHHHHHHHHHHhhcCCCe
Confidence 578888888 9999998887655455555544 3 2245555555556533333
No 80
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=27.77 E-value=1.2e+02 Score=22.19 Aligned_cols=47 Identities=11% Similarity=-0.028 Sum_probs=31.3
Q ss_pred hHhHHHHHHHhccccceeEEEeeCCcEEEEEEecCCchhhcchHHHHHHHHH
Q psy14342 216 PIDIENSVMRAHKKIAECAVFTWTNLLVVVVELDGNESEALDLVPLVTNAVL 267 (316)
Q Consensus 216 p~eIE~~l~~~~p~v~~~~v~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~l~ 267 (316)
..++++.|.+ +|.|.+|..+.-...+.+.+... +.+++.+.+.+.+.
T Consensus 82 ~~~~~~~l~~-~peV~~~~~vtG~~d~~~~v~~~----d~~~l~~~l~~~l~ 128 (152)
T 2cg4_A 82 YPSALAKLES-LDEVTEAYYTTGHYSIFIKVMCR----SIDALQHVLINKIQ 128 (152)
T ss_dssp HHHHHHHHHT-CTTEEEEEEESSSCSEEEEEEES----CHHHHHHHHHHTTT
T ss_pred HHHHHHHHhC-CcCeEEEEEEecccCEEEEEEEC----CHHHHHHHHHHHhh
Confidence 5789999999 99999998876554555555443 23455555555554
No 81
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=26.88 E-value=1.1e+02 Score=18.31 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=21.1
Q ss_pred ChHhHHHHHHHhccccceeEEEeeCCcEEEE
Q psy14342 215 HPIDIENSVMRAHKKIAECAVFTWTNLLVVV 245 (316)
Q Consensus 215 ~p~eIE~~l~~~~p~v~~~~v~~~~~~~~~~ 245 (316)
....||++|.+ .++|..+.+--..+++.+.
T Consensus 16 C~~~i~~~l~~-~~gv~~~~v~~~~~~~~v~ 45 (69)
T 4a4j_A 16 CASSIERAIAK-VPGVQSCQVNFALEQAVVS 45 (69)
T ss_dssp HHHHHHHHHHT-STTEEEEEEETTTTEEEEE
T ss_pred HHHHHHHHHhc-CCCeEEEEEEecCCEEEEE
Confidence 56789999999 9999766554444555443
No 82
>4ap8_A Molybdopterin synthase catalytic subunit; transferase; 2.78A {Homo sapiens}
Probab=25.83 E-value=1.9e+02 Score=21.01 Aligned_cols=70 Identities=10% Similarity=0.072 Sum_probs=42.5
Q ss_pred cccceeEECCcccChHhHHHHHHHhccccceeEEE-ee-----CCcEEEEEEecCCchhhcchHHHHHHHHHHhcCee
Q psy14342 202 ALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVF-TW-----TNLLVVVVELDGNESEALDLVPLVTNAVLEEHHLI 273 (316)
Q Consensus 202 R~dd~i~~~G~~v~p~eIE~~l~~~~p~v~~~~v~-~~-----~~~~~~~v~~~~~~~~~~~l~~~~~~~l~~~~~~~ 273 (316)
+.+|+|++.-+.++++++.+.+ . .|.....+.| |. +++-+..++......-.+..++.+.+...+++.+.
T Consensus 5 ~~~d~i~it~e~l~~~~~~~~v-~-~p~~GAvv~F~G~VR~~~~g~~V~~L~ye~y~~ma~~~l~~I~~ea~~r~~l~ 80 (135)
T 4ap8_A 5 KSKDVINFTAEKLSVDEVSQLV-I-SPLCGAISLFVGTTRNNFEGKKVISLEYEAYLPMAENEVRKICSDIRQKWPVK 80 (135)
T ss_dssp CCCEEEEEESSCCCHHHHHHHT-C-CTTCSEEEEEEEECCSEETTEEEEEEEEEEEETHHHHHHHHHHHHHHHHSCEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHh-c-CCCCCeEEEEEEEECCCCCCCcEEEEEEEecchHHHHHHHHHHHHHHHhcCCc
Confidence 5679999999999999998876 4 5665544444 22 23344444433222333455566666666666653
No 83
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=22.08 E-value=2.5e+02 Score=21.06 Aligned_cols=52 Identities=12% Similarity=0.090 Sum_probs=32.9
Q ss_pred ChHhHHHHHHHhccccceeEEEeeCCcEEEEEEecCCchhhcchHHHHHHHHHHhcCe
Q psy14342 215 HPIDIENSVMRAHKKIAECAVFTWTNLLVVVVELDGNESEALDLVPLVTNAVLEEHHL 272 (316)
Q Consensus 215 ~p~eIE~~l~~~~p~v~~~~v~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~l~~~~~~ 272 (316)
...++++.|.+ +|.|.+|..+.-...+.+.+... +.+++.+.+ +.+....+.
T Consensus 99 ~~~~v~~~l~~-~peV~~~~~vtG~~d~l~~v~~~----d~~~l~~~l-~~l~~~~gV 150 (171)
T 2e1c_A 99 KYSEVASNLAK-YPEIVEVYETTGDYDMVVKIRTK----NSEELNNFL-DLIGSIPGV 150 (171)
T ss_dssp CHHHHHHHHHT-STTEEEEEECSSSSSEEEEEEES----SHHHHHHHH-HHHHHSTTE
T ss_pred hHHHHHHHHhc-CcCeEEEEEeeCCCCEEEEEEEC----CHHHHHHHH-HHHhcCCCc
Confidence 45789999999 99999988875444455544443 234555555 555544344
No 84
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=21.31 E-value=2.4e+02 Score=20.39 Aligned_cols=52 Identities=12% Similarity=0.090 Sum_probs=32.8
Q ss_pred ChHhHHHHHHHhccccceeEEEeeCCcEEEEEEecCCchhhcchHHHHHHHHHHhcCe
Q psy14342 215 HPIDIENSVMRAHKKIAECAVFTWTNLLVVVVELDGNESEALDLVPLVTNAVLEEHHL 272 (316)
Q Consensus 215 ~p~eIE~~l~~~~p~v~~~~v~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~l~~~~~~ 272 (316)
...++.+.|.+ +|.|.+|..+.-...+.+.+... +.+++.+.+ +.+....+.
T Consensus 79 ~~~~~~~~l~~-~p~V~~~~~~tG~~d~~~~v~~~----d~~~l~~~~-~~l~~~~gV 130 (151)
T 2cyy_A 79 KYSEVASNLAK-YPEIVEVYETTGDYDMVVKIRTK----NSEELNNFL-DLIGSIPGV 130 (151)
T ss_dssp CHHHHHHHHHT-CTTEEEEEECSSSSSEEEEEEES----SHHHHHHHH-HHHHTSTTE
T ss_pred cHHHHHHHHhc-CCCeeEeeEecCCCCEEEEEEEC----CHHHHHHHH-HHHhCCCCE
Confidence 45789999999 99999988865444455555443 234555555 555533344
No 85
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=20.04 E-value=83 Score=21.19 Aligned_cols=24 Identities=17% Similarity=0.458 Sum_probs=20.0
Q ss_pred cccceeEECCccc----ChHhHHHHHHH
Q psy14342 202 ALDETIMLRGMRY----HPIDIENSVMR 225 (316)
Q Consensus 202 R~dd~i~~~G~~v----~p~eIE~~l~~ 225 (316)
.-+|+||-+|.+| +|.|+.+.+.+
T Consensus 17 kfkdiikkngfkvrtvrspqelkdsiee 44 (134)
T 2l69_A 17 KFKDIIKKNGFKVRTVRSPQELKDSIEE 44 (134)
T ss_dssp HHHHHHHHTTCEEEEECSHHHHHHHHHH
T ss_pred HHHHHHHhcCceEEEecCHHHHHHHHHH
Confidence 3478999999986 89999888877
Done!