RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14342
(316 letters)
>gnl|CDD|213273 cd05905, Dip2, Disco-interacting protein 2 (Dip2). Dip2 proteins
show sequence similarity to other members of the
adenylate forming enzyme family, including insect
luciferase, acetyl CoA ligases and the adenylation
domain of nonribosomal peptide synthetases (NRPS).
However, its function may have diverged from other
members of the superfamily. In mouse embryo, Dip2
homolog A plays an important role in the development of
both vertebrate and invertebrate nervous systems. Dip2A
appears to regulate cell growth and the arrangement of
cells in organs. Biochemically, Dip2A functions as a
receptor of FSTL1, an extracellular glycoprotein, and
may play a role as a cardiovascular protective agent.
Length = 556
Score = 144 bits (365), Expect = 4e-39
Identities = 38/111 (34%), Positives = 64/111 (57%)
Query: 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWV 60
AY+++ S G + G+ ++H A+ + C+++K AC+ R I LD G+GF
Sbjct: 147 DTAYIEYKTSKEGSVMGVTVTHQALLTHCQALKQACQYTEGRTIVNVLDFKKGVGFWHGC 206
Query: 61 LSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSH 111
L+SV +G H+ILIPP+ ++ NP LW +S+Y+++DT L +H
Sbjct: 207 LTSVMNGMHTILIPPALMKNNPLLWFQIISKYKIKDTLVKSRDLHWALNAH 257
Score = 134 bits (338), Expect = 2e-35
Identities = 47/105 (44%), Positives = 63/105 (60%), Gaps = 2/105 (1%)
Query: 203 LDETIMLRGMRYHPIDIENSVMRAHKKI--AECAVFTWTNLLVVVVELDGNESEALDLVP 260
+DET+ + G+R++P DIE +V+R H I AVF+ T +VVV E G+E E+ VP
Sbjct: 452 IDETLEVSGLRHNPDDIEATVLRVHPMIYRGRIAVFSVTERVVVVAEQRGSEEESFQWVP 511
Query: 261 LVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLAD 305
V NA+L EH +IV V +V PG +P GEKQR R FL
Sbjct: 512 RVLNAILSEHQVIVYVVALVPPGTLPKTPLGEKQRSETRASFLEG 556
Score = 128 bits (324), Expect = 2e-33
Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 4/123 (3%)
Query: 68 HHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMKLACEL 127
I + PA +A +Y+ G + G+ ++H A+ + C+++K AC+
Sbjct: 129 TLKKPIKDWNPHLPPANLDTAYIEYKT----SKEGSVMGVTVTHQALLTHCQALKQACQY 184
Query: 128 YPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTF 187
R I LD G+GF L+SV +G H+ILIPP+ ++ NP LW +S+Y+++DT
Sbjct: 185 TEGRTIVNVLDFKKGVGFWHGCLTSVMNGMHTILIPPALMKNNPLLWFQIISKYKIKDTL 244
Query: 188 CSC 190
Sbjct: 245 VKS 247
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the
class I adenylate forming enzyme family and is
homologous to fatty acyl-coenzyme A (CoA) ligases
(FACLs). However, FAALs produce only the acyl adenylate
and are unable to perform the thioester-forming
reaction, while FACLs perform a two-step catalytic
reaction; AMP ligation followed by CoA ligation using
ATP and CoA as cofactors. FAALs have insertion motifs
between the N-terminal and C-terminal subdomains that
distinguish them from the FACLs. This insertion motif
precludes the binding of CoA, thus preventing CoA
ligation. It has been suggested that the acyl adenylates
serve as substrates for multifunctional polyketide
synthases to permit synthesis of complex lipids such as
phthiocerol dimycocerosate, sulfolipids, mycolic acids,
and mycobactin.
Length = 547
Score = 55.7 bits (135), Expect = 1e-08
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 203 LDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTNL------LVVVVELDGNES--E 254
L + I++RG ++P DIE +V RAH + A ++ LVVV E+ +
Sbjct: 438 LKDLIIIRGRNHYPQDIEATVERAHPALRPGAAAAFSVDGDGEERLVVVAEVRRRGLPAD 497
Query: 255 ALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLA 304
L + AV EH + V+V PG +P S G+ QR R+ +LA
Sbjct: 498 LAALAEAIRAAVAREHGVAPADVVLVRPGTLPKTSSGKIQRRACRELYLA 547
Score = 51.8 bits (125), Expect = 2e-07
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 2 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPY--CGLGFALW 59
+A+L ++ +TG G+ ++H + + R++ A L P L Y GL L
Sbjct: 150 IAFLQYTSGSTGAPKGVMVTHGNLLANLRAIARAFGLDPDDVGVSWLPLYHDMGLIGGL- 208
Query: 60 VLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYR 93
L +Y+G +L+ P P WL A+S+YR
Sbjct: 209 -LQPLYAGFPVVLMSPLAFLRRPLRWLEAISRYR 241
Score = 49.1 bits (118), Expect = 2e-06
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 110 SHAAVTSLCRSMKLACELYPSRHIALCLDPY--CGLGFALWVLSSVYSGHHSILIPPSEV 167
+H + + R++ A L P L Y GL L L +Y+G +L+ P
Sbjct: 169 THGNLLANLRAIARAFGLDPDDVGVSWLPLYHDMGLIGGL--LQPLYAGFPVVLMSPLAF 226
Query: 168 EVNPALWLSAVSQYR 182
P WL A+S+YR
Sbjct: 227 LRRPLRWLEAISRYR 241
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 51.6 bits (124), Expect = 2e-07
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 2 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVL 61
LAY+ ++ TTG G+ ++H + +L + L P + L L P G +
Sbjct: 133 LAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGLTPGDRVLLLL-PLHFDGSVWEIF 191
Query: 62 SSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 94
+ +G +L+P ++PA L + +Y+V
Sbjct: 192 GPLLAGGTLVLVPKF--TLDPARLLDLIEKYKV 222
Score = 42.7 bits (101), Expect = 2e-04
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 102 GMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSIL 161
G G+ ++H + +L + L P + L L P G + + +G +L
Sbjct: 144 GKPKGVMLTHRNLLALAAGLAERFGLTPGDRVLLLL-PLHFDGSVWEIFGPLLAGGTLVL 202
Query: 162 IPPSEVEVNPALWLSAVSQYRV 183
+P ++PA L + +Y+V
Sbjct: 203 VPKF--TLDPARLLDLIEKYKV 222
Score = 34.2 bits (79), Expect = 0.070
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 203 LDETIMLRGMRYHPIDIENSVMRAHKKIAECAV 235
D+ + +RG R P +IE V+ H +AE AV
Sbjct: 381 KDDQVKIRGERIEPGEIEA-VLLEHPGVAEAAV 412
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a
family of nonribosomal peptide synthetases (NRPSs)
synthesizing toxins and antitumor agents. The
adenylation (A) domain of NRPS recognizes a specific
amino acid or hydroxy acid and activates it as an
(amino)-acyl adenylate by hydrolysis of ATP. The
activated acyl moiety then forms a thioester to the
enzyme-bound cofactor phosphopantetheine of a peptidyl
carrier protein domain. This family includes NRPSs that
synthesize toxins and antitumor agents; for example,
TubE for Tubulysine, CrpA for cryptophycin, TdiA for
terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for
Valinomycin. Nonribosomal peptide synthetases are large
multifunctional enzymes which synthesize many
therapeutically useful peptides. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and, in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 560
Score = 40.3 bits (95), Expect = 0.001
Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
Query: 2 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALC---LDPYCGLGFAL 58
A L + +TG+ + ++H + + + ++L LD G+
Sbjct: 169 PALLLLTSGSTGVPKCVVLTHRNILARSAGTVQVNG-FTPDDVSLNWMPLDHVGGIVM-- 225
Query: 59 WVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTF 98
L VY G I +P + +P WL + +YRV T+
Sbjct: 226 LHLRDVYLGCQQIHVPTDYILADPLRWLDLIDRYRVTITW 265
Score = 36.1 bits (84), Expect = 0.020
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 100 SYGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALC---LDPYCGLGFALWVLSSVYSG 156
S G+ + ++H + + + ++L LD G+ L VY G
Sbjct: 178 STGVPKCVVLTHRNILARSAGTVQVNG-FTPDDVSLNWMPLDHVGGIVM--LHLRDVYLG 234
Query: 157 HHSILIPPSEVEVNPALWLSAVSQYRVRDTF 187
I +P + +P WL + +YRV T+
Sbjct: 235 CQQIHVPTDYILADPLRWLDLIDRYRVTITW 265
>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS) similar to mycosubtilin
synthase subunit A (MycA). The adenylation (A) domain
of NRPS recognizes a specific amino acid or hydroxy acid
and activates it as (amino)-acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family includes
NRPS similar to mycosubtilin synthase subunit A (MycA).
Mycosubtilin, which is characterized by a beta-amino
fatty acid moiety linked to the circular heptapeptide
Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin
family of lipopeptide antibiotics. The mycosubtilin
synthase subunit A (MycA) combines functional domains
derived from peptide synthetases, amino transferases,
and fatty acid synthases. Nonribosomal peptide
synthetases are large multifunction enzymes that
synthesize many therapeutically useful peptides. NRPS
has a distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions.
Length = 499
Score = 39.6 bits (93), Expect = 0.002
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 2 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYC-GLGFALWV 60
+A++ FS +TG G+ ++H + + ++ A E+ S + L P +G +
Sbjct: 108 IAFIQFSSGSTGEPKGVILTHKNLLTNIEAIIEAAEI-TSEDVFLSWMPLTHDMGLIGFH 166
Query: 61 LSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFC 99
L+ G + L+P P LWL SQ+R
Sbjct: 167 LTPTALGINQYLMPTRLFIRRPLLWLDKASQHRATILSS 205
Score = 34.9 bits (81), Expect = 0.054
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 143 LGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFC 188
+G + L+ G + L+P P LWL SQ+R
Sbjct: 160 MGLIGFHLTPTALGINQYLMPTRLFIRRPLLWLDKASQHRATILSS 205
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 39.0 bits (91), Expect = 0.003
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 7/110 (6%)
Query: 203 LDETIMLRGMRYHPIDIENSVMRAHKKIAECAVF-----TWTNLLVVVVELDGNESEALD 257
L + I+ G +P +IE V+ H +AE AV W +V VV L L
Sbjct: 423 LKDLIISGGENIYPEEIEA-VLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELT 481
Query: 258 LVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQL 307
L + + L +VV +P + G+ R LR+ + A+
Sbjct: 482 AEEL-RAFLRKRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRAEPR 530
Score = 32.4 bits (74), Expect = 0.30
Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 11 TTGMLAGIKMSHAAVTSLCRSMKLACELYPSRH--IALCLDPYCGLGFALWVLSSVYSGH 68
TTG+ G+ ++H + + + A + + L + G + +L+ + G
Sbjct: 182 TTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGG 241
Query: 69 HSILIPPSEVEVNPALWLSAVSQYRV 94
+L+ P + LWL + +Y+V
Sbjct: 242 TLVLLSPEPFDPEEVLWL--IEKYKV 265
Score = 30.5 bits (69), Expect = 1.4
Identities = 18/112 (16%), Positives = 42/112 (37%), Gaps = 7/112 (6%)
Query: 106 GIKMSHAAVTSLCRSMKLACELYPSRH--IALCLDPYCGLGFALWVLSSVYSGHHSILIP 163
G+ ++H + + + A + + L + G + +L+ + G +L+
Sbjct: 188 GVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLS 247
Query: 164 PSEVEVNPALWLSAVSQYRVRDTFCSCNGALYQG-AERLALDETIMLRGMRY 214
P + LWL + +Y+V T S + + D+ + +R
Sbjct: 248 PEPFDPEEVLWL--IEKYKV--TVLSGVPTFLRELLDNPEKDDDDLSSSLRL 295
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large
N-terminal subdomain and a smaller C-terminal
subdomain.
Length = 338
Score = 36.9 bits (86), Expect = 0.011
Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 2 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVL 61
A++ ++ TTG G+ +SH + + +++ A L + L + +G +L
Sbjct: 2 PAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGLL 61
Query: 62 SSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 94
++ +G +L P +L + QYRV
Sbjct: 62 GALLAGGTVVLYEGFP---FPLSFLELIEQYRV 91
Score = 34.6 bits (80), Expect = 0.049
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 203 LDETIMLRGMRYHPIDIENSVMRAHKKIAECAVF-----TWTNLLVVVVEL 248
+ I + G +P ++E+ ++ H +AE AV +V V L
Sbjct: 246 SKDLIKVGGENVYPAEVESVLL-QHPAVAEAAVVGVPDEDRGERIVAFVVL 295
Score = 30.0 bits (68), Expect = 1.8
Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 106 GIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPS 165
G+ +SH + + +++ A L + L + +G +L ++ +G +L
Sbjct: 17 GVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGLLGALLAGGTVVLYEGF 76
Query: 166 EVEVNPALWLSAVSQYRV 183
P +L + QYRV
Sbjct: 77 P---FPLSFLELIEQYRV 91
>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated.
Length = 578
Score = 36.5 bits (85), Expect = 0.014
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 24/120 (20%)
Query: 207 IMLRGMRYHPIDIENSVMRAHKKI--AECAVFT----WTNLLVVVVEL------DGNESE 254
+++ G ++P DIE ++ ++I A + T LV ++EL D +
Sbjct: 462 LIVDGRNHYPDDIEATI----QEITGGRVAAISVPDDGTEKLVAIIELKKRGDSDEEAMD 517
Query: 255 ALDLVP-LVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQR-----MHLRDGFLADQLD 308
L V VT+A+ + H L V V+V PG +PI + G+ +R + +D F +LD
Sbjct: 518 RLRTVKREVTSAISKSHGLSVADLVLVAPGSIPITTSGKIRRAACVEQYRQDEF--TRLD 575
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 34.4 bits (79), Expect = 0.086
Identities = 29/123 (23%), Positives = 44/123 (35%), Gaps = 21/123 (17%)
Query: 203 LDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTNLLVVVVELDGNE---------- 252
L + +++RG +P DIE +V R E V + V G E
Sbjct: 450 LKDMLIVRGHNLYPQDIEKTVER------EVEVVRKGRVAAFAVNHQGEEGIGIAAEISR 503
Query: 253 -----SEALDLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQL 307
L+ + AV E V ++++PG +P S G+ QR R L
Sbjct: 504 SVQKILPPQALIKSIRQAVAEACQEAPSVVLLLNPGALPKTSSGKLQRSACRLRLADGSL 563
Query: 308 DPI 310
D
Sbjct: 564 DSY 566
Score = 33.6 bits (77), Expect = 0.14
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 2 LAYLDFSVSTTGMLAGIKMSHA---AVTSLCRSMKLACELYPSRHIALCLDPYCGLGFAL 58
+A+L ++ +T + G+++SH A L R +L P I L Y +G
Sbjct: 168 IAFLQYTSGSTALPKGVQVSHGNLVANEQLIRH-GFGIDLNPDDVIVSWLPLYHDMGLIG 226
Query: 59 WVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYR 93
+L ++SG +L+ P+ P WL A+S+Y
Sbjct: 227 GLLQPIFSGVPCVLMSPAYFLERPLRWLEAISEYG 261
Score = 28.2 bits (63), Expect = 7.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 149 VLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYR 182
+L ++SG +L+ P+ P WL A+S+Y
Sbjct: 228 LLQPIFSGVPCVLMSPAYFLERPLRWLEAISEYG 261
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 350
Score = 33.4 bits (77), Expect = 0.12
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 204 DETIMLRGMRYHPIDIENSVMRAHKKIAECAVF 236
D+ I RG R P +IE + AH +AE AV
Sbjct: 254 DDMIKTRGYRVSPTEIEEVIC-AHPLVAEAAVI 285
>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated.
Length = 545
Score = 33.8 bits (78), Expect = 0.13
Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 16/103 (15%)
Query: 207 IMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTNL------LVVVVE--LDGNESEALDL 258
I++ G +P DIE + R AV + V VE + +E +
Sbjct: 440 IIMAGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSREGFAVAVESNAFEDPAEVRRI 499
Query: 259 VPLVTNAVLEEHHLIVGVA----VVVDPGVVPINSRGEKQRMH 297
V + V+ E VGV VV+ PG +P G+ +R +
Sbjct: 500 RHQVAHEVVAE----VGVRPRNVVVLGPGSIPKTPSGKLRRAN 538
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as
an intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA
ligation is believed to be the initial step in the bile
acid 7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 32.1 bits (74), Expect = 0.39
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 11 TTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHS 70
TTG G+ ++H + + + +L P + L P L++L ++ +G
Sbjct: 12 TTGRPKGVMLTHRNLLANAVNALAGVDLSP-GDVYLLAAPLYHAAGGLFLLPALAAGGTV 70
Query: 71 ILIPPSEVEVNPALWLSAVSQYRVRDTFC 99
+L+P + +P L + ++RV TF
Sbjct: 71 VLMP----KFDPEAVLDLIERHRVTHTFL 95
Score = 29.4 bits (67), Expect = 2.2
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 216 PIDIENSVMRAHKKIAECAVF-----TWTNLLVVVVEL 248
P ++EN V+ AH +A+ AV W +V VV L
Sbjct: 258 PAEVEN-VLLAHPAVADVAVIGVPDEEWGEAVVAVVVL 294
Score = 27.4 bits (62), Expect = 9.9
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 106 GIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILIPPS 165
G+ ++H + + + +L P + L P L++L ++ +G +L+P
Sbjct: 18 GVMLTHRNLLANAVNALAGVDLSP-GDVYLLAAPLYHAAGGLFLLPALAAGGTVVLMP-- 74
Query: 166 EVEVNPALWLSAVSQYRVRDTFC 188
+ +P L + ++RV TF
Sbjct: 75 --KFDPEAVLDLIERHRVTHTFL 95
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional.
Length = 5163
Score = 31.9 bits (72), Expect = 0.51
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 2 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPS 41
LAY+ ++ +TG+ G+ +SH A+ + C++ EL P+
Sbjct: 2148 LAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPA 2187
Score = 29.5 bits (66), Expect = 2.9
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 2 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPS 41
LAY+ ++ +TG G+ +SH ++ + + EL P
Sbjct: 4696 LAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGERYELTPD 4735
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional.
Length = 3956
Score = 31.7 bits (72), Expect = 0.68
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 2 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACEL 38
LAY+ ++ +TG G+ + H A+ + + A EL
Sbjct: 3239 LAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYEL 3275
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting
insects and 4-Coumarate-CoA Ligase (4CL). This family
contains two functionally unique groups of proteins; one
group is insect firefly luciferases and the other is
plant 4-coumarate:coenzyme A ligases. However, they
share significant sequence similarity in spite of their
functional diversity. Luciferase catalyzes the
production of light in the presence of MgATP, molecular
oxygen, and luciferin. In the first step, luciferin is
activated by acylation of its carboxylate group with
ATP, resulting in an enzyme-bound luciferyl adenylate.
In the second step, luciferyl adenylate reacts with
molecular oxygen, producing an enzyme-bound excited
state product (Luc=O*) and releasing AMP. This
excited-state product then decays to the ground state
(Luc=O), emitting a quantum of visible light.
4-coumarate:coenzyme A ligase is a key enzyme in the
phenylpropanoid metabolic pathway for monolignol and
flavonoid biosynthesis. It catalyzes the synthesis of
hydroxycinnamate-CoA thioesters in a two-step reaction,
involving the formation of hydroxycinnamate-AMP
anhydride and then the nucleophilic substitution of AMP
by CoA. The phenylpropanoid pathway is one of the most
important secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 487
Score = 31.1 bits (71), Expect = 0.93
Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 14/103 (13%)
Query: 2 LAYLDFSVSTTGMLAGIKMSH---AAVTSLCRSMKLACELYPSRHIALCLDPY---CGLG 55
A L +S TTG+ G+ +SH A S + + + L P+ GL
Sbjct: 148 TAALLYSSGTTGLPKGVMLSHKNIIANLSQVQDTLKGNPDSSNDVV-LTFLPFYHAYGLT 206
Query: 56 FALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTF 98
L S+ G I++P + E +L + +Y+V F
Sbjct: 207 TTLA---SLLCGATVIIMPKFDSE----TFLKLIEKYKVTSLF 242
Score = 30.7 bits (70), Expect = 1.2
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 205 ETIMLRGMRYHPIDIENSVMRAHKKIAECAVF 236
E I +G + P ++E +V+ H K+A+ AV
Sbjct: 396 ELIKYKGYQVPPAELE-AVLLEHPKVADAAVI 426
>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 562
Score = 30.2 bits (68), Expect = 1.6
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 207 IMLRGMRYHPIDIENSVMRAHKKIAECAV 235
I++ G +P +IE+ VM AH K+A CA
Sbjct: 467 IIVSGFNVYPNEIEDVVM-AHPKVANCAA 494
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA
synthetase like family (ACS). This family is most
similar to acetyl-CoA synthetase. Acetyl-CoA synthetase
(ACS) catalyzes the formation of acetyl-CoA from
acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is only present in bacteria.
Length = 443
Score = 29.7 bits (67), Expect = 2.2
Identities = 35/144 (24%), Positives = 52/144 (36%), Gaps = 32/144 (22%)
Query: 2 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVL 61
A L F+ TTG G+ H AV + + + +L P DP WV
Sbjct: 91 PALLHFTSGTTGKPKGVLHVHRAVVAHYATARYVLDLRPDDVYWCTADPG-------WVT 143
Query: 62 SSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCS---YGMLA--GIKMSHAAVTS 116
+ Y I+ P L+ V+ F + YG+L + + + A T+
Sbjct: 144 GTSY----GIIAP----------LLNGVTLVVDEGEFDAERWYGILEEEKVTVWYTAPTA 189
Query: 117 LCRSMKLACELYPS------RHIA 134
L M+ EL RHIA
Sbjct: 190 LRMLMRAGPELAARYDLSSLRHIA 213
>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated.
Length = 414
Score = 29.2 bits (66), Expect = 3.1
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 203 LDETIMLRGMRYHPIDIENSVMRAHKKIAECAVF 236
+D+ I + G+ +PI++E+ VM + E V+
Sbjct: 313 MDDVINVSGLNVYPIEVED-VMLRLPGVQEAVVY 345
>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related
proteins [Secondary metabolites biosynthesis, transport,
and catabolism].
Length = 642
Score = 29.2 bits (65), Expect = 3.3
Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 2 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVL 61
LAY+ ++ +TG G+++ H A+ +L L + L L +
Sbjct: 368 LAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGL-DADDRVLALASLSFDASVFEIF 426
Query: 62 SSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 94
++ G +++ P+ ++V+PA L + +
Sbjct: 427 GALLEG-ARLVLAPALLQVDPAALLELLEAQGI 458
>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of
siderophore-synthesizing nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family of
siderophore-synthesizing NRPS includes the third
adenylation domain of SidN from the endophytic fungus
Neotyphodium lolii, ferrichrome siderophore synthetase,
HC-toxin synthetase, and enniatin synthase. NRPSs are
large multifunctional enzymes which synthesize many
therapeutically useful peptides. These natural products
include antibiotics, immunosuppressants, plant and
animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions.
Length = 447
Score = 28.7 bits (65), Expect = 3.9
Identities = 8/40 (20%), Positives = 19/40 (47%)
Query: 2 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPS 41
AY+ ++ +TG G+ ++H + + R+ + P
Sbjct: 101 PAYVIYTSGSTGKPKGVVITHRNICNFLRAEGAILGIRPG 140
>gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism].
Length = 438
Score = 28.4 bits (64), Expect = 6.0
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 204 DETIMLRGMRYHPIDIENSVMRAHKKIAECAVF----TWTNLLVVVVELDGNESEALDLV 259
D+ +++RG+ P IE +++ + + + L V VEL+ E D
Sbjct: 334 DDMLIVRGVNVFPSQIERVLLQIPEVTPHYQIILTRNGGLDELTVRVELENEAEELEDER 393
Query: 260 PLVTNAVLEEHHLIVGVAV---VVDPGVVP 286
L +++ +GV V +V+PG +P
Sbjct: 394 RL-AKKLIKNIKSELGVRVEVELVEPGELP 422
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Streptoalloteichus
tallysomycin biosynthesis genes. The adenylation (A)
domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the TLM biosynthetic
gene cluster from Streptoalloteichus that consists of
nine NRPS genes; the N-terminal module of TlmVI (NRPS-5)
and the starter module of BlmVI (NRPS-5) are comprised
of the acyl CoA ligase (AL) and acyl carrier protein
(ACP)-like domains, which are thought to be involved in
the biosynthesis of the beta-aminoalaninamide moiety.
Length = 476
Score = 28.3 bits (64), Expect = 6.2
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 16/100 (16%)
Query: 2 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPS-RHIALCLDPYCGLGFALWV 60
LAY+ F+ +TG G+ ++H A + + + P+ R +AL L F L
Sbjct: 128 LAYVIFTSGSTGEPKGVMITHRAAVNTILDVNRRFGVGPADRVLALS-----ALHFDL-- 180
Query: 61 LSSVY------SGHHSILIPPSEVEVNPALWLSAVSQYRV 94
SVY S ++++P +P W V ++ V
Sbjct: 181 --SVYDIFGALSAGAALVLPDEARRRDPDHWAELVQRHGV 218
>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional.
Length = 612
Score = 28.2 bits (63), Expect = 7.8
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 2 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELY-PSRHIALCLDPYCGLGFALWV 60
+++L ++ +T G++++H AV + M L+ +L + H L Y +G ++
Sbjct: 195 VSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHDMGLSMIG 254
Query: 61 LSSVYSGHHSILIPPSEVEVNPALWLSAVS 90
+VY GH +++ P + V P W+ A+S
Sbjct: 255 FPAVYGGHSTLMSPTAFVR-RPQRWIKALS 283
>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase.
Length = 563
Score = 27.8 bits (62), Expect = 8.4
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 7 FSVSTTGMLAGIKMSHAA--VTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSV 64
F+ TTG G+ +SH+A V SL K+A Y + L P C +G L+ +
Sbjct: 179 FTSGTTGRPKGVTISHSALIVQSLA---KIAIVGYGEDDVYLHTAPLCHIGGLSSALAML 235
Query: 65 YSGHHSILIPPSEVEVNPALWLSAVSQYRV 94
G +L+P + + L A+ Q+ V
Sbjct: 236 MVGACHVLLP----KFDAKAALQAIKQHNV 261
>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 440
Score = 27.8 bits (62), Expect = 9.4
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 204 DETIMLRGMRYHPIDIENSVMRAHKKIAECAV 235
D+ I+ G R P D+E++++ H +AE AV
Sbjct: 340 DDVIISAGYRIGPFDVESALL-EHPAVAEAAV 370
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.137 0.427
Gapped
Lambda K H
0.267 0.0714 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,207,417
Number of extensions: 1536192
Number of successful extensions: 1612
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1598
Number of HSP's successfully gapped: 57
Length of query: 316
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 219
Effective length of database: 6,635,264
Effective search space: 1453122816
Effective search space used: 1453122816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.5 bits)