RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14342
(316 letters)
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl
adenylate, structural genom 2, protein structure
initiative; HET: 1ZZ; 1.85A {Legionella pneumophila
subsp} PDB: 3lnv_A*
Length = 590
Score = 111 bits (280), Expect = 1e-27
Identities = 20/101 (19%), Positives = 44/101 (43%)
Query: 1 MLAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWV 60
+A+L ++ +T G+ +SH + + + + I L P+ +G +
Sbjct: 168 DIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCI 227
Query: 61 LSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSY 101
L+ +Y G +I++ P NP WL +++Y+ +
Sbjct: 228 LTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPN 268
Score = 111 bits (279), Expect = 2e-27
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 10/123 (8%)
Query: 203 LDETIMLRGMRYHPIDIENSVMRAHKKI--AECAVFTWTN----LLVVVVELDGNESEAL 256
+ + I++ G ++P DIE S+M + +CA F L V+ E+ + +
Sbjct: 457 IKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHEYKLTVMCEVKNRFMDDV 516
Query: 257 D---LVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLDPIYVA 313
L + V E H L V V++ +P + G+ +R R L L PI
Sbjct: 517 AQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDKTL-PIVAT 575
Query: 314 YNM 316
+ +
Sbjct: 576 WQL 578
Score = 95.8 bits (239), Expect = 3e-22
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 4/101 (3%)
Query: 88 AVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFAL 147
A QY T S G+ +SH + + + + I L P+ +G
Sbjct: 170 AFLQY----TSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIG 225
Query: 148 WVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFC 188
+L+ +Y G +I++ P NP WL +++Y+ +
Sbjct: 226 CILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGS 266
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme
family,, structural genomics, PSI-2, protein structure
initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB:
3pbk_A*
Length = 576
Score = 61.5 bits (150), Expect = 8e-11
Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 6/110 (5%)
Query: 207 IMLRGMRYHPIDIENSVMRAHKKIAE--CAVFTW-TNLLVVVVELDGNESEALD-LVPLV 262
I++RG P DIE +I F +++ ++ ++ E L+ +
Sbjct: 464 IIIRGRNIWPQDIEYIA-EQEPEIHSGDAIAFVTAQEKIILQIQCRISDEERRGQLIHAL 522
Query: 263 TNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFLADQLDPIYV 312
+ E + + ++ P +P S G+ R + + + V
Sbjct: 523 AARIQSEFGVTAAI-DLLPPHSIPRTSSGKPARAEAKKRYQKAYAASLNV 571
Score = 51.1 bits (123), Expect = 2e-07
Identities = 18/94 (19%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Query: 2 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALC-LDPYCGLGFALWV 60
+AYL ++ +T G+ ++H V + R++ + L Y +G ++
Sbjct: 178 IAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFL 237
Query: 61 LSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 94
L+ V + + + + P WL +S+ R
Sbjct: 238 LTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRG 271
Score = 44.6 bits (106), Expect = 3e-05
Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 5/97 (5%)
Query: 88 AVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALC-LDPYCGLGFA 146
A QY T S G+ ++H V + R++ + L Y +G
Sbjct: 179 AYLQY----TSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLV 234
Query: 147 LWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 183
++L+ V + + + + P WL +S+ R
Sbjct: 235 GFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRG 271
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase
like fold, AMP-binding; 2.05A {Mycobacterium
tuberculosis} PDB: 3e53_A
Length = 480
Score = 50.5 bits (121), Expect = 3e-07
Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 6/99 (6%)
Query: 2 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMKLACEL------YPSRHIALCLDPYCGLG 55
AYL ++ +T AG+ MSH V + P+ + L Y +G
Sbjct: 185 TAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMG 244
Query: 56 FALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 94
+ + + + G+ ++L P PA W+ ++
Sbjct: 245 LVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFH 283
Score = 44.7 bits (106), Expect = 2e-05
Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 105 AGIKMSHAAVTSLCRSMKLACEL------YPSRHIALCLDPYCGLGFALWVLSSVYSGHH 158
AG+ MSH V + P+ + L Y +G + + + + G+
Sbjct: 199 AGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYP 258
Query: 159 SILIPPSEVEVNPALWLSAVSQYRV 183
++L P PA W+ ++
Sbjct: 259 AVLTSPVSFLQRPARWMHLMASDFH 283
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 9e-05
Identities = 50/368 (13%), Positives = 108/368 (29%), Gaps = 107/368 (29%)
Query: 13 GMLAGI-KMSHAAVTSLCRSMKLACELYPSR----HIALCLDPYCGLGFALWVLSSVYS- 66
G+ G K A +C S K+ C++ + ++ C P L L L
Sbjct: 157 GV-LGSGKTWVAL--DVCLSYKVQCKM-DFKIFWLNLKNCNSPETVLE-MLQKLLYQIDP 211
Query: 67 -----GHHSILIPPSEVEVNPA--------------LWLSAVSQYRVRDTF---CSYGML 104
HS I + L L V + + F C +L
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK--IL 269
Query: 105 AGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYC-GLG-------FALWVLSSVYSG 156
+T+ R ++ L + + LD + L ++
Sbjct: 270 ---------LTT--RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD- 317
Query: 157 HHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSCNGALYQGAERL---------ALDETI 207
+P + NP LS +++ +RD + + + ++L L+
Sbjct: 318 -----LPREVLTTNP-RRLSIIAE-SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 208 MLRGMRYHPIDIENSVMRAHKKIAECAVFT--WTNLLVVVVELDGNESEALDLVPL-VTN 264
+ + + SV I + + W +++ V + N+ LV
Sbjct: 371 YRK--MFDRL----SVFPPSAHIPT-ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 265 AVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLR-------------DGFLADQLDP-- 309
+ + + + + V ++ + +H D + LD
Sbjct: 424 STISIPSIYLELKVKLE----------NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 310 -IYVAYNM 316
++ +++
Sbjct: 474 YSHIGHHL 481
Score = 31.7 bits (71), Expect = 0.35
Identities = 40/228 (17%), Positives = 64/228 (28%), Gaps = 72/228 (31%)
Query: 59 WVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLC 118
S S L ++E AL S V Y + TF S ++
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI-------------- 465
Query: 119 RSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYS--GHHSILIPPSE-VEVNPAL-- 173
LD Y YS GHH I E + + +
Sbjct: 466 ---------------PPYLDQY------------FYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 174 ---WLSAVSQYRVRDTFCSCNGALYQGAERLALDETIMLRGMRYHPIDIENSVMRAHKKI 230
+L ++R + N + L+ L+ + + D + R I
Sbjct: 499 DFRFLEQ----KIRHDSTAWNASGS------ILNTLQQLKFYKPYICDNDPKYERLVNAI 548
Query: 231 AECAVFTWTNLLVVVVELDGNESEALDLVPLV----TNAVLEEHHLIV 274
+ NL+ S+ DL+ + A+ EE H V
Sbjct: 549 LDFLPKIEENLI---------CSKYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 27.5 bits (60), Expect = 8.6
Identities = 16/105 (15%), Positives = 35/105 (33%), Gaps = 24/105 (22%)
Query: 214 YHPIDIENSVMRAH-KKIAECAVFTWTNLLVVVVELDGNESEALDLVPLVTNA----VLE 268
+H +D E + K I VF V D + + + +++ ++
Sbjct: 4 HHHMDFETGEHQYQYKDILS--VF----EDAFVDNFDCKDVQDM-PKSILSKEEIDHIIM 56
Query: 269 EHHLIVGVAVVVDPGVVPINSRGEK--QRMHLRDGFLADQLDPIY 311
+ G + + S+ E+ Q+ F+ + L Y
Sbjct: 57 SKDAVSGTLRLFW----TLLSKQEEMVQK------FVEEVLRINY 91
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 1e-04
Identities = 40/292 (13%), Positives = 87/292 (29%), Gaps = 109/292 (37%)
Query: 69 HSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGMLAGIKMSHAAVTSLCRSMKLAC--E 126
H +L+P + + A SQ +++ F K+ + E
Sbjct: 18 HVLLVPTA-------SFFIA-SQ--LQEQF--------NKILPEPTEGFAADDEPTTPAE 59
Query: 127 LYPSR---HIALCLDPYCG------LGFALWVLSSVY-SGH--HSI---LIPPSEVEV-- 169
L + +++ ++P L L + Y G+ H++ L+ ++ +
Sbjct: 60 LV-GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 170 -----------------------NPALWLSAVSQYRVRDTFCSCNGALYQGAERLALDET 206
N AL AV + + G QG +E
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSAL-FRAVGEGNAQ-LVAIFGG---QGNTDDYFEE- 172
Query: 207 IMLRGM--RYHPIDIENSVMRAHKKIAECA---------------VFTWTNLLVVVVELD 249
LR + YH + + + + + + ++E + W L+
Sbjct: 173 --LRDLYQTYHVL-VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW---------LE 220
Query: 250 GNES----EALDLVPL------VTNAVLEEHHLIVGVAVVVDPGVVPINSRG 291
+ + L +P+ V H+++ + PG + +G
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLA---HYVVTAKLLGFTPGELRSYLKG 269
Score = 34.6 bits (79), Expect = 0.051
Identities = 31/165 (18%), Positives = 50/165 (30%), Gaps = 66/165 (40%)
Query: 171 PALWLSAVSQYRV---------RDTFCSCNG-------ALYQGAERLALDETIML---RG 211
PAL L + + TF G AL A+ ++++ + + RG
Sbjct: 1734 PALTLMEKAAFEDLKSKGLIPADATFA---GHSLGEYAALASLADVMSIESLVEVVFYRG 1790
Query: 212 MRYH---PID---IENSVM------RAHKKIAECAVFTW-------TNLLV--------- 243
M P D N M R ++ A+ T LV
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVEN 1850
Query: 244 --VVV------------ELDGNESEALDLVPLVTNAVLE--EHHL 272
V L+ + + +D++ L + LE E HL
Sbjct: 1851 QQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics,
PSI-2, protein structure initiative; 1.43A {Bacteroides
vulgatus atcc 8482} PDB: 3lax_A
Length = 109
Score = 31.1 bits (71), Expect = 0.13
Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 204 DETIMLRGMRYHPIDIENSVMRAHKKIAECAVF----TWTNLLVVVVELDGNESEALDLV 259
D+ I+L+G+ PI IE +++ + ++ + + + V VEL ++ +
Sbjct: 4 DDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRL 63
Query: 260 PLVTNAVLEEHHLIVGVAV---VVDPGVVP 286
+T + + + V +V G +P
Sbjct: 64 QALTREITRQLKDEILVTPRVKLVPKGALP 93
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE ADP COA; 2.20A {Bacteroides
thetaiotaomicron} PDB: 3s89_A*
Length = 436
Score = 32.6 bits (75), Expect = 0.15
Identities = 14/91 (15%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Query: 204 DETIMLRGMRYHPIDIENSVMRAHKKIA---ECAVFTWTNL--LVVVVELDGNESEALDL 258
D+ +++G+ P+ +E ++ ++ + T N ++V VEL ++
Sbjct: 331 DDMFIIKGVNIFPMQVE-KILVQFPELGSNYLITLETVNNQDEMIVEVELSDLSTDNYIE 389
Query: 259 VPLVTNAVLEEHHLIVGVAV---VVDPGVVP 286
+ + ++ + + V +V G +P
Sbjct: 390 LEKIRRDIIRQLKDEILVTPKVKLVKKGSLP 420
>3nwr_A A rubisco-like protein; lyase; HET: KCX; 1.50A {Burkholderia
fungorum}
Length = 432
Score = 32.3 bits (73), Expect = 0.18
Identities = 14/74 (18%), Positives = 26/74 (35%)
Query: 93 RVRDTFCSYGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSS 152
V S M + +A+ SL R+ L + + + + DP G+ F +
Sbjct: 249 LVEREGGSCVMASINWCGFSAIQSLRRTTPLVLHAHRNGYGMMSRDPALGMSFQAYQTLW 308
Query: 153 VYSGHHSILIPPSE 166
SG + +
Sbjct: 309 RLSGVDHMHVHGLA 322
Score = 31.1 bits (70), Expect = 0.51
Identities = 12/64 (18%), Positives = 24/64 (37%)
Query: 14 MLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHSILI 73
M + +A+ SL R+ L + + + + DP G+ F + SG + +
Sbjct: 259 MASINWCGFSAIQSLRRTTPLVLHAHRNGYGMMSRDPALGMSFQAYQTLWRLSGVDHMHV 318
Query: 74 PPSE 77
Sbjct: 319 HGLA 322
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
photoprotein, luminescence, aspulvinone, natural product
extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
Length = 550
Score = 32.6 bits (75), Expect = 0.19
Identities = 15/98 (15%), Positives = 34/98 (34%), Gaps = 12/98 (12%)
Query: 2 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMK--LACELYPSRHIALCLDPYC---GLGF 56
+A + S +TG+ G+ + H + + L + P+ G+
Sbjct: 192 IALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFT 251
Query: 57 ALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 94
L + G +L+ L+L ++ Y++
Sbjct: 252 ---TLGYLICGFRVVLMY----RFEEELFLRSLQDYKI 282
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia
cenocepacia} PDB: 2y4n_A*
Length = 437
Score = 31.9 bits (73), Expect = 0.23
Identities = 15/91 (16%), Positives = 34/91 (37%), Gaps = 9/91 (9%)
Query: 204 DETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTN-----LLVVVVELDGNESEALDL 258
D+ +++RG+ P IE + + +A T +L + VE +
Sbjct: 333 DDMMIVRGVNVFPTQIE-EQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAPDTAA 391
Query: 259 VPLVTNAVLEEHHLIVGVAV---VVDPGVVP 286
+ + A+ + ++GV V+ +
Sbjct: 392 IQVAKQALAYDIKSLIGVTAVINVLPVNGIE 422
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Length = 443
Score = 31.5 bits (72), Expect = 0.31
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 11/102 (10%)
Query: 204 DETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTN-----LLVVVVEL--DGNESEAL 256
D+ +++RG+ P IE ++ A ++ T + L + VEL + S
Sbjct: 335 DDMLIVRGVNVFPSQIE-EIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAASVTD 393
Query: 257 DLVPLVTNAVLEEHHLIVGVAV---VVDPGVVPINSRGEKQR 295
+ + +VGV+ V+ G +P + G+ +R
Sbjct: 394 GERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARR 435
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 31.8 bits (73), Expect = 0.32
Identities = 13/98 (13%), Positives = 37/98 (37%), Gaps = 12/98 (12%)
Query: 2 LAYLDFSVSTTGMLAGIKMSHAAVTSLCRSMK--LACELYPSRHIALCLDPYC---GLGF 56
+A + S +TG+ G++++H + + + + L + P+ G+
Sbjct: 194 VALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFT 253
Query: 57 ALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRV 94
L + G +++ + + +L + Y+
Sbjct: 254 ---TLGYLICGFRVVMLT----KFDEETFLKTLQDYKC 284
>2d69_A Ribulose bisphosphate carboxylase; alpha/beta barrel, structural
genomics, NPPSFA, national Pro protein structural and
functional analyses; 1.90A {Pyrococcus horikoshii} SCOP:
c.1.14.1 d.58.9.1 PDB: 2cxe_A 2cwx_A
Length = 430
Score = 31.2 bits (70), Expect = 0.40
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 3/78 (3%)
Query: 92 YRVRDTFCSYGMLAGIKMSHAAVTSL---CRSMKLACELYPSRHIALCLDPYCGLGFALW 148
V + Y M+ + +A+ + + LA + + H A +P G+
Sbjct: 239 EMVANEGGQYVMIDIVVAGWSALQYMREVTEDLGLAIHAHRAMHAAFTRNPRHGITMLAL 298
Query: 149 VLSSVYSGHHSILIPPSE 166
++ G I +
Sbjct: 299 AKAARMIGVDQIHTGTAV 316
Score = 28.5 bits (63), Expect = 3.3
Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Query: 14 MLAGIKMSHAAVTSL---CRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHS 70
M+ + +A+ + + LA + + H A +P G+ ++ G
Sbjct: 250 MIDIVVAGWSALQYMREVTEDLGLAIHAHRAMHAAFTRNPRHGITMLALAKAARMIGVDQ 309
Query: 71 ILIPPSE 77
I +
Sbjct: 310 IHTGTAV 316
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics,
PSI-2, protein S initiative, fatty acid synthesis; HET:
GOL; 2.00A {Rhodopseudomonas palustris}
Length = 509
Score = 28.7 bits (65), Expect = 2.6
Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 5/88 (5%)
Query: 11 TTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVLSSVYSGHHS 70
G G +S + S+ A L + L P + +L+ +G S
Sbjct: 171 VGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGML-PLFHVTGLGLMLTLQQAGGAS 229
Query: 71 ILIPPSEVEVNPALWLSAVSQYRVRDTF 98
++ + +PA + ++V
Sbjct: 230 VIAA----KFDPAQAARDIEAHKVTVMA 253
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 28.0 bits (63), Expect = 5.0
Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 17/116 (14%)
Query: 11 TTGMLAGIKMSHAAVTSLCRSMKLACELYPSRHIALCL-DPYCGLGFALWVLSSVYS--- 66
T+G+ + S++++ + L S I + D G+ L +L S+
Sbjct: 217 TSGLPKMAEHSYSSLGLKAKMDAGWTGLQASD-IMWTISDT----GWILNILCSLMEPWA 271
Query: 67 -GHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCS----YGMLAGIKMSHAAVTSL 117
G + + +P + L +S Y ++ + Y ML +S L
Sbjct: 272 LGA-CTFVHLLP-KFDPLVILKTLSSYPIK-SMMGAPIVYRMLLQQDLSSYKFPHL 324
>3kdn_A Rubisco, ribulose bisphosphate carboxylase;
ribulose-1,5-bisphosphate carboxylase/oxygenase, Ca
dioxide fixation, lyase, magnesium; HET: KCX CAP; 2.09A
{Thermococcus kodakaraensis} PDB: 3a13_A* 3kdo_A*
3a12_A* 1geh_A*
Length = 444
Score = 27.4 bits (60), Expect = 7.6
Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 3/78 (3%)
Query: 93 RVRDTFCSYGMLAGIKMSHAAVTSL---CRSMKLACELYPSRHIALCLDPYCGLGFALWV 149
+ D + M+ + A+ + LA + + H A +PY G+ +
Sbjct: 243 VLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLA 302
Query: 150 LSSVYSGHHSILIPPSEV 167
G + + +
Sbjct: 303 KLYRLIGIDQLHVGTAGA 320
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel
adenylate-forming EN fold; HET: MCA AMP; 1.43A
{Streptomyces coelicolor} PDB: 3nyr_A*
Length = 505
Score = 27.2 bits (61), Expect = 7.8
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 211 GMRYHPIDIENSVMRAHKKIAECAVF 236
G + +IEN + H ++ E AV
Sbjct: 413 GYKIGAGEIEN-ALLEHPEVREAAVT 437
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.137 0.427
Gapped
Lambda K H
0.267 0.0690 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,074,668
Number of extensions: 305796
Number of successful extensions: 716
Number of sequences better than 10.0: 1
Number of HSP's gapped: 705
Number of HSP's successfully gapped: 30
Length of query: 316
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 222
Effective length of database: 4,077,219
Effective search space: 905142618
Effective search space used: 905142618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.8 bits)