RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14342
(316 letters)
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 47.7 bits (113), Expect = 9e-07
Identities = 12/107 (11%), Positives = 36/107 (33%), Gaps = 1/107 (0%)
Query: 2 LAYLDFSVSTTGMLAGIKMSHAA-VTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWV 60
++ ++ +TG G+ + + + K + +P D G + +
Sbjct: 254 PLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLL 313
Query: 61 LSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGMLAGI 107
+ G +++ PA V +++V + + + +
Sbjct: 314 YGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRAL 360
Score = 46.2 bits (109), Expect = 3e-06
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 13/121 (10%)
Query: 203 LDETIMLRGMRYHPIDIENSVMRAHKKIAECAVF-----TWTNLLVVVVELDGNESEALD 257
+D+ + + G R +IE+ + AH KIAE AV + V L+ E + +
Sbjct: 512 VDDVLNVSGHRLGTAEIES-ALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPE 570
Query: 258 LVPLVTNAVLEE--HHLIVGVAVVVDPGVVPINSRGEKQRMHLRD---GFLADQLDPIYV 312
L V N V +E V D +P G+ R LR G ++ D +
Sbjct: 571 LYAEVRNWVRKEIGPLATPDVLHWTDS--LPKTRSGKIMRRILRKIAAGDTSNLGDTSTL 628
Query: 313 A 313
A
Sbjct: 629 A 629
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 45.4 bits (106), Expect = 5e-06
Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 9/102 (8%)
Query: 204 DETIMLRGMRYHPIDIENSVMRAHKKIAECAVF-----TWTNLLVVVVELDGNESEALDL 258
+ I G + ++EN + AH + + A+ V + +A +L
Sbjct: 430 KDQINRGGEKVAAEEVEN-HLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAEL 488
Query: 259 VPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRD 300
+ L + + V V P G+ + LR+
Sbjct: 489 KAFLRERGLAAYKIPDRVEFVES---FPQTGVGKVSKKALRE 527
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 44.5 bits (104), Expect = 1e-05
Identities = 14/107 (13%), Positives = 39/107 (36%), Gaps = 1/107 (0%)
Query: 3 AYLDFSVSTTGMLAGIKMSH-AAVTSLCRSMKLACELYPSRHIALCLDPYCGLGFALWVL 61
+L ++ +TG G++ S + +M+ + + D G V
Sbjct: 242 LFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVY 301
Query: 62 SSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSYGMLAGIK 108
+ G +++ + N + + + +++V + + L +K
Sbjct: 302 GPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLK 348
Score = 38.7 bits (89), Expect = 7e-04
Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 17/112 (15%)
Query: 203 LDETIMLRGMRYHPIDIENSVMRAHKKIAECAVF-----TWTNLLVVVVELDGN------ 251
+D+ + + G R +IE + +AECAV + V L
Sbjct: 502 VDDVVNVSGHRLSTAEIEA-AIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTA 560
Query: 252 -ESEALDLVPLVTNAVLEE--HHLIVGVAVVVDPGVVPINSRGEKQRMHLRD 300
+ E D+ + V ++ + ++VD +P G+ R LR
Sbjct: 561 TDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDD--LPKTRSGKIMRRILRK 610
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 44.1 bits (103), Expect = 1e-05
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 8/105 (7%)
Query: 204 DETIMLRGMRYHPIDIENSVMRAHKKIAECAVF-----TWTNLLVVVVELDGNESEALDL 258
I +G + P ++E+ ++ H I + V L VV L+ ++
Sbjct: 436 KSLIKYKGYQVAPAELES-ILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKE 494
Query: 259 VPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRDGFL 303
+ + + + G V VD VP G+ +R+ +
Sbjct: 495 IVDYVASQVTTAKKLRGGVVFVDE--VPKGLTGKLDARKIREILI 537
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 43.7 bits (102), Expect = 2e-05
Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 9/102 (8%)
Query: 204 DETIMLRGMRYHPIDIENSVMRAHKKIAECAVF-----TWTNLLVVVVELDGNESEALDL 258
+ I G +D+EN + H K+ E AV W + VV G + +L
Sbjct: 428 KDLIKSGGEWISSVDLEN-ALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEEL 486
Query: 259 VPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRD 300
+ A + L + +P S G+ + LR+
Sbjct: 487 NEHLLKAGFAKWQLPDAYVFAEE---IPRTSAGKFLKRALRE 525
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 42.6 bits (99), Expect = 4e-05
Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 11/103 (10%)
Query: 203 LDETIMLRGMRYHPIDIENSVMRAHKKIAECAVF-----TWTNLLVVVVELDGNESEALD 257
+D + +RG R ++E+ ++ H I+E AV L + +
Sbjct: 413 IDNQVKIRGHRVELEEVES-ILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPLE-Q 470
Query: 258 LVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRD 300
L + + ++I + +D +P+ S G+ R L +
Sbjct: 471 LRQFSSEEL--PTYMIPSYFIQLDK--MPLTSNGKIDRKQLPE 509
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
sp. [TaxId: 512]}
Length = 503
Score = 42.3 bits (98), Expect = 5e-05
Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 10/104 (9%)
Query: 203 LDETIMLRGMRYHPIDIENSVMRAHKKIAECAVF-----TWTNLLVVVVEL-DGNESEAL 256
+D+ I+ G HP +IE V+ + E V W + V G A
Sbjct: 401 VDDMIISGGENIHPSEIER-VLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSAD 459
Query: 257 DLVPLVTNAVLEEHHLIVGVAVVVDPGVVPINSRGEKQRMHLRD 300
L ++ L + ++D +P N+ + R L
Sbjct: 460 ALDTFCRSSELADFKRPKRY-FILDQ--LPKNALNKVLRRQLVQ 500
>d2aa4a2 c.55.1.10 (A:120-289) N-acetylmannosamine kinase NanK
{Escherichia coli [TaxId: 562]}
Length = 170
Score = 25.2 bits (54), Expect = 7.9
Identities = 17/140 (12%), Positives = 38/140 (27%), Gaps = 2/140 (1%)
Query: 142 GLGFALWVLSSVYSGHHSILIPPSEVEVNPALWLSAVSQYRVRDTFCSCNGALYQ-GAER 200
G+G + + +G + +P + + + S G E
Sbjct: 13 GVGGGVVSGCKLLTGPGGLAGHIGHTLADPHGPVCGCGRTGCVEAIASGRGIAAAAQGEL 72
Query: 201 LALDETIMLRGMRYHPIDIENSVMRAHKKIAECAVFTWTNLLVVVVELDGNESEALDLVP 260
D + + + R+ + +A V + G+ A +
Sbjct: 73 AGADAKTIFTRAGQGDEQAQQLIHRSARTLARLIADIKATTDCQCVVVGGSVGLAEGYLA 132
Query: 261 LVTNAVLEEHHLIVGVAVVV 280
LV L + V ++
Sbjct: 133 LV-ETYLAQEPAAFHVDLLA 151
>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT
{Escherichia coli [TaxId: 562]}
Length = 213
Score = 25.2 bits (55), Expect = 8.4
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 212 MRYHPIDIENSVMRAH 227
M Y D++N V R H
Sbjct: 1 MNYTKFDVKNWVRREH 16
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.137 0.427
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,196,045
Number of extensions: 54364
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 12
Length of query: 316
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 231
Effective length of database: 1,240,546
Effective search space: 286566126
Effective search space used: 286566126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)