BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14345
(431 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1C4T|A Chain A, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1C4T|B Chain B, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1C4T|C Chain C, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1SCZ|A Chain A, Improved Structural Model For The Catalytic Domain Of
E.Coli Dihydrolipoamide Succinyltransferase
pdb|1E2O|A Chain A, Catalytic Domain From Dihydrolipoamide Succinyltransferase
Length = 233
Score = 229 bits (584), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 119/232 (51%), Positives = 160/232 (68%), Gaps = 17/232 (7%)
Query: 103 RSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLG 162
RSE+RV M R+R+R+A+RL EA+N AMLTTFNE++M I++ RK + EAF+K++G++LG
Sbjct: 2 RSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLG 61
Query: 163 FMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVL 222
FMS ++KA AL+ P VNA I+G D+VY +Y D+S+ + + PR GL++ VL
Sbjct: 62 FMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAV-----STPR----GLVTPVL 112
Query: 223 VLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTP 282
+ L E+ A R + L +ED GG FTI+NGGVFGSL+ TP
Sbjct: 113 RDVDTL-------GMADIEKKIKELAVKGR-DGKLTVEDLTGGNFTITNGGVFGSLMSTP 164
Query: 283 IINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFL 334
IINPPQSAILGMH +RP+A+ GQV + PMMY+AL+YDHRLIDGRE+V FL
Sbjct: 165 IINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFL 216
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 67/91 (73%)
Query: 341 EAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVV 400
EAF+K++G++LGFMS ++KA AL+ P VNA I+G D+VY +Y D+S+AV+TP+GLV
Sbjct: 50 EAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVT 109
Query: 401 PVIRNVEAMNFADIELTIAALGEKARTGKYT 431
PV+R+V+ + ADIE I L K R GK T
Sbjct: 110 PVLRDVDTLGMADIEKKIKELAVKGRDGKLT 140
>pdb|3MAE|A Chain A, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
pdb|3MAE|B Chain B, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
pdb|3MAE|C Chain C, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
Length = 256
Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 129/258 (50%), Gaps = 18/258 (6%)
Query: 90 LPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAH 149
L A PT + ++ + +N +R+ IA+ + ++ E+D + ++ +R A
Sbjct: 3 LKAAMPTPPVRSAAGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAV 62
Query: 150 LEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNL 209
++F+K+ G L + + FIKA A AL++ P +N+ G I+ ++IS+ +
Sbjct: 63 KDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLNSTWAGDKIIEHANINISIAIAA----- 117
Query: 210 PRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTI 269
G L V V+ S R + A R N L+ D +GGTFT+
Sbjct: 118 ------GDLLYVPVIKNADE-----KSIKGIAREISELAGKAR-NGKLSQADMEGGTFTV 165
Query: 270 SNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGRE 329
++ G FGS+ IIN PQ+AIL + +RPV I + V+ M+ + L+ DHR++DG
Sbjct: 166 NSTGSFGSVQSMGIINHPQAAILQVESIVKRPVIIDDMIAVRDMVNLCLSIDHRILDGLL 225
Query: 330 AVLFLQK-EAHLEAFQKK 346
A FLQ +A++E K+
Sbjct: 226 AGKFLQAIKANVEKISKE 243
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 53/91 (58%)
Query: 341 EAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVV 400
++F+K+ G L + + FIKA A AL++ P +N+ G I+ ++IS+A+A L V
Sbjct: 64 DSFKKEEGYSLTYFAFFIKAVAQALKEFPQLNSTWAGDKIIEHANINISIAIAAGDLLYV 123
Query: 401 PVIRNVEAMNFADIELTIAALGEKARTGKYT 431
PVI+N + + I I+ L KAR GK +
Sbjct: 124 PVIKNADEKSIKGIAREISELAGKARNGKLS 154
>pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|B Chain B, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|C Chain C, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|D Chain D, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|E Chain E, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
Length = 242
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 115/232 (49%), Gaps = 20/232 (8%)
Query: 101 GTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLK 160
G E R KM+ +R+ IA+ + +++ +T +E D++ ++ RK +A + G+K
Sbjct: 10 GEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKK-FKAIAAEKGIK 68
Query: 161 LGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDISVGMGRNESNLPRWCFNGLL 218
L F+ +KA AL++ PV+N I E +I+ + Y +I + + L +
Sbjct: 69 LTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADR 128
Query: 219 SGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSL 278
+ L + +N + +R + L + G + TI+N G G
Sbjct: 129 KPIFALAQEIN-ELAEKAR----------------DGKLTPGEMKGASCTITNIGSAGGQ 171
Query: 279 LGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREA 330
TP+IN P+ AILG+ E+P+ G++V PM+ ++L++DHR+IDG A
Sbjct: 172 WFTPVINHPEVAILGIGRIAEKPIVRDGEIVAAPMLALSLSFDHRMIDGATA 223
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 3/128 (2%)
Query: 307 QVVVKPMMYVALTYDH-RLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYAL 365
+ + K M++ T H L+D + + +A + G+KL F+ +KA AL
Sbjct: 24 RAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSAL 83
Query: 366 QDQPVVNAVI--EGTDIVYRDYVDISVAVATPKGLVVPVIRNVEAMNFADIELTIAALGE 423
++ PV+N I E +I+ + Y +I +A T +GL+VPVI++ + + I L E
Sbjct: 84 REYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAE 143
Query: 424 KARTGKYT 431
KAR GK T
Sbjct: 144 KARDGKLT 151
>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 428
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 115/233 (49%), Gaps = 20/233 (8%)
Query: 100 SGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGL 159
G E R KM+ +R+ IA+ + +++ +T +E D++ ++ RK +A + G+
Sbjct: 193 EGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRK-KFKAIAAEKGI 251
Query: 160 KLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDISVGMGRNESNLPRWCFNGL 217
KL F+ +KA AL++ PV+N I E +I+ + Y +I + + L +
Sbjct: 252 KLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHAD 311
Query: 218 LSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGS 277
+ L + +N + +R + L + G + TI+N G G
Sbjct: 312 RKPIFALAQEIN-ELAEKAR----------------DGKLTPGEMKGASCTITNIGSAGG 354
Query: 278 LLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREA 330
TP+IN P+ AILG+ E+P+ G++V PM+ ++L++DHR+IDG A
Sbjct: 355 QWFTPVINHPEVAILGIGRIAEKPIVRDGEIVAAPMLALSLSFDHRMIDGATA 407
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 3/128 (2%)
Query: 307 QVVVKPMMYVALTYDH-RLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYAL 365
+ + K M++ T H L+D + + +A + G+KL F+ +KA AL
Sbjct: 208 RAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSAL 267
Query: 366 QDQPVVNAVI--EGTDIVYRDYVDISVAVATPKGLVVPVIRNVEAMNFADIELTIAALGE 423
++ PV+N I E +I+ + Y +I +A T +GL+VPVI++ + + I L E
Sbjct: 268 REYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAE 327
Query: 424 KARTGKYT 431
KAR GK T
Sbjct: 328 KARDGKLT 335
>pdb|3RQC|A Chain A, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|B Chain B, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|C Chain C, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|D Chain D, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|E Chain E, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|F Chain F, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|G Chain G, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
Length = 224
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 116/232 (50%), Gaps = 32/232 (13%)
Query: 105 EQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFM 164
E+ ++M+ +R+ I ++ +A+ + T E+D+++++ + +A +K + GF+
Sbjct: 6 EEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSA-KARNRKVTVT-GFL 63
Query: 165 SPFIKASAYALQDQPVVNAVIEGTDIVY--RDYVDISVGMGRNESNLPRWCFNGLLSGVL 222
+ + + L+ P +NA+ + T VY + Y +I + + + P +GL V
Sbjct: 64 ARIVPS---ILKQYPYLNAIYDETRRVYILKKYYNIGIAV-----DTP----DGL--NVF 109
Query: 223 VLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTP 282
V+ + S + A R N L +++ TFTI+N G G ++ TP
Sbjct: 110 VIKDADR-----KSMVEISAEISDKASRAREN-KLQLDEVQDSTFTITNVGTIGGIMSTP 163
Query: 283 IINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFL 334
IIN P+ AILG+H ER +G + MY++L+ DHRLIDG A F+
Sbjct: 164 IINYPEVAILGVHRILER----EG----RKYMYLSLSCDHRLIDGAVATRFI 207
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 352 GFMSPFIKASAYALQDQPVVNAVIEGTDIVY--RDYVDISVAVATPKGLVVPVIRNVEAM 409
GF++ + + L+ P +NA+ + T VY + Y +I +AV TP GL V VI++ +
Sbjct: 61 GFLARIVPS---ILKQYPYLNAIYDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRK 117
Query: 410 NFADIELTIAALGEKARTGK 429
+ +I I+ +AR K
Sbjct: 118 SMVEISAEISDKASRARENK 137
>pdb|3L60|A Chain A, Crystal Structure Of Branched-Chain Alpha-Keto Acid
Dehydrogenase Subunit E2 From Mycobacterium Tuberculosis
Length = 250
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 45/71 (63%)
Query: 264 GGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHR 323
G TFT+SN G G G P+IN P++AILG+ RPV + G+VV +P M + +DHR
Sbjct: 155 GSTFTVSNFGALGVDDGVPVINHPEAAILGLGAIKPRPVVVGGEVVARPTMTLTCVFDHR 214
Query: 324 LIDGREAVLFL 334
++DG + F+
Sbjct: 215 VVDGAQVAQFM 225
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 376 EGTDIVYRDYVDISVAVATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGKYT 431
EG + V + AT +GL+VPV+ + + N ++ +A L AR G T
Sbjct: 94 EGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDKNTRELASRVAELITGAREGTLT 149
>pdb|1DPC|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 116/255 (45%), Gaps = 21/255 (8%)
Query: 90 LPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAH 149
+PP P + + + V M R+ Q A L + +T F D++ + FR A
Sbjct: 1 IPPIPPV-DFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQ 59
Query: 150 LEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDISVGMGRNES 207
+A +K G+KL + +KA AY L++ P N+ + G ++ + YV I +
Sbjct: 60 -KAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAV----- 113
Query: 208 NLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTF 267
+ P +GLL V+ +++ K S A R + L + G F
Sbjct: 114 DTP----DGLLVPVI---RNVDQK----SLLQLAAEAAELAEKAR-SKKLGADAMQGACF 161
Query: 268 TISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDG 327
TIS+ G G TPI+N P+ AILG+ +PV + M+ ++L+YDHR+IDG
Sbjct: 162 TISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDHRVIDG 221
Query: 328 REAVLFLQKEAHLEA 342
A F ++ L A
Sbjct: 222 AAAARFTKRLGDLLA 236
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 9/77 (11%)
Query: 340 LEAFQ-------KKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDISV 390
LEAF+ +K G+KL + +KA AY L++ P N+ + G ++ + YV I
Sbjct: 52 LEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGF 111
Query: 391 AVATPKGLVVPVIRNVE 407
AV TP GL+VPVIRNV+
Sbjct: 112 AVDTPDGLLVPVIRNVD 128
>pdb|1EAA|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAB|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAC|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAD|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAE|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAF|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
Length = 243
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 114/255 (44%), Gaps = 21/255 (8%)
Query: 90 LPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAH 149
+PP P + + + V M R+ Q A L + +T F D++ + FR A
Sbjct: 1 IPPIPPV-DFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQ 59
Query: 150 LEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDISVGMGRNES 207
+A KK G+KL + +KA AY L++ P N+ + G ++ + YV I + +
Sbjct: 60 -KAVAKKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPD- 117
Query: 208 NLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTF 267
GLL V+ +++ K S A R + L + G F
Sbjct: 118 --------GLLVPVI---RNVDQK----SLLQLAAEAAELAEKAR-SKKLGADAMQGACF 161
Query: 268 TISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDG 327
TIS+ G G TPI+N P+ AILG+ +PV + M+ ++L+YDHR+I+G
Sbjct: 162 TISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDHRVING 221
Query: 328 REAVLFLQKEAHLEA 342
A F ++ L A
Sbjct: 222 AAAARFTKRLGDLLA 236
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 9/77 (11%)
Query: 340 LEAFQ-------KKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDISV 390
LEAF+ KK G+KL + +KA AY L++ P N+ + G ++ + YV I
Sbjct: 52 LEAFRVAQKAVAKKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGF 111
Query: 391 AVATPKGLVVPVIRNVE 407
AV TP GL+VPVIRNV+
Sbjct: 112 AVDTPDGLLVPVIRNVD 128
>pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2II3|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II4|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II5|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
Length = 262
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 91/197 (46%), Gaps = 23/197 (11%)
Query: 135 NEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGT--DIVY 192
+E+D++ +++ R+ L+ G+KL FM F+KA++ L P++NA ++ +I Y
Sbjct: 60 DEVDLTELVKLRE-ELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITY 118
Query: 193 RDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDR 252
+ +I + M + + N + + + LN + S
Sbjct: 119 KASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSA--------------- 163
Query: 253 LNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAI--LGMHGTFERPVAIKGQVVV 310
L+ D GGTFT+SN G G P+I PP+ AI LG R KG+V
Sbjct: 164 --GQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPR-FNEKGEVCK 220
Query: 311 KPMMYVALTYDHRLIDG 327
+M V+ + DHR+IDG
Sbjct: 221 AQIMNVSWSADHRIIDG 237
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 57/100 (57%), Gaps = 4/100 (4%)
Query: 334 LQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGT--DIVYRDYVDISVA 391
L++E AF + G+KL FM F+KA++ L P++NA ++ +I Y+ +I +A
Sbjct: 70 LREELKPIAFAR--GIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIA 127
Query: 392 VATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGKYT 431
+ T +GL+VP ++NV+ + +I + L + G+ +
Sbjct: 128 MDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLS 167
>pdb|3B8K|A Chain A, Structure Of The Truncated Human Dihydrolipoyl
Acetyltransferase (E2)
Length = 239
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 97/222 (43%), Gaps = 21/222 (9%)
Query: 108 VKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPF 167
+ ++ +R+ IAQRL +++ +++M ++ RK + + + K+
Sbjct: 15 IPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEGRS--KISVNDFI 72
Query: 168 IKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEH 227
IKASA A P N+ T I VD+SV + + FN + GV +
Sbjct: 73 IKASALACLKVPEANSSWMDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIAND 132
Query: 228 LNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPP 287
+ + + H + GGTFTISN G+FG + IINPP
Sbjct: 133 VVSLATKAREGKLQPH-----------------EFQGGTFTISNLGMFGIKNFSAIINPP 175
Query: 288 QSAILGMHGTFERPVAIKGQ--VVVKPMMYVALTYDHRLIDG 327
Q+ IL + + ++ V + V MM V L+ DHR++DG
Sbjct: 176 QACILAIGASEDKLVPADNEKGFDVASMMSVTLSCDHRVVDG 217
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 37/73 (50%)
Query: 357 FIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVVPVIRNVEAMNFADIEL 416
IKASA A P N+ T I VD+SVAV+TP GL+ P++ N I
Sbjct: 72 IIKASALACLKVPEANSSWMDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIAN 131
Query: 417 TIAALGEKARTGK 429
+ +L KAR GK
Sbjct: 132 DVVSLATKAREGK 144
>pdb|1DPD|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 116/255 (45%), Gaps = 21/255 (8%)
Query: 90 LPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAH 149
+PP P + + + V M R+ Q A L + +T F D++ + FR A
Sbjct: 1 IPPIPPV-DFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQ 59
Query: 150 LEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDISVGMGRNES 207
+A +K G+KL + +KA AY L++ P N+ + G ++ + YV I +
Sbjct: 60 -KAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAV----- 113
Query: 208 NLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTF 267
+ P +GLL V+ +++ K S A R + L + G F
Sbjct: 114 DTP----DGLLVPVI---RNVDQK----SLLQLAAEAAELAEKAR-SKKLGADAMQGACF 161
Query: 268 TISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDG 327
TI++ G G TPI+N P+ AILG+ +PV + M+ ++L+YDHR+I+G
Sbjct: 162 TIASLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDHRVING 221
Query: 328 REAVLFLQKEAHLEA 342
A F ++ L A
Sbjct: 222 AAAARFTKRLGDLLA 236
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 9/77 (11%)
Query: 340 LEAFQ-------KKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDISV 390
LEAF+ +K G+KL + +KA AY L++ P N+ + G ++ + YV I
Sbjct: 52 LEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGF 111
Query: 391 AVATPKGLVVPVIRNVE 407
AV TP GL+VPVIRNV+
Sbjct: 112 AVDTPDGLLVPVIRNVD 128
>pdb|1DPB|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 115/255 (45%), Gaps = 21/255 (8%)
Query: 90 LPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAH 149
+PP P + + + V M R+ Q A L + +T F D++ + FR A
Sbjct: 1 IPPIPPV-DFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQ 59
Query: 150 LEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDISVGMGRNES 207
+A +K G+KL + +KA AY L++ P N+ + G ++ + YV I +
Sbjct: 60 -KAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAV----- 113
Query: 208 NLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTF 267
+ P +GLL V+ +++ K S A R + L + G F
Sbjct: 114 DTP----DGLLVPVI---RNVDQK----SLLQLAAEAAELAEKAR-SKKLGADAMQGACF 161
Query: 268 TISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDG 327
TIS+ G G TPI+N P+ AILG+ +PV + M+ ++L+YD R+I+G
Sbjct: 162 TISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDCRVING 221
Query: 328 REAVLFLQKEAHLEA 342
A F ++ L A
Sbjct: 222 AAAARFTKRLGDLLA 236
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 9/78 (11%)
Query: 339 HLEAFQ-------KKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDIS 389
LEAF+ +K G+KL + +KA AY L++ P N+ + G ++ + YV I
Sbjct: 51 ELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIG 110
Query: 390 VAVATPKGLVVPVIRNVE 407
AV TP GL+VPVIRNV+
Sbjct: 111 FAVDTPDGLLVPVIRNVD 128
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
Length = 1113
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 257 LAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKG-------QVV 309
L ED G T +++N G G++ P + Q AI+G G E P +G +
Sbjct: 129 LTAEDFSGVTISLTNPGTLGTVHSVPRLMQGQGAIIGA-GAMEYPAEFQGASEERIADLG 187
Query: 310 VKPMMYVALTYDHRLIDGREAVLFLQ 335
+ ++ + TYDHR+I G E+ FL+
Sbjct: 188 IGKLITLTSTYDHRIIQGAESGDFLR 213
>pdb|1T5E|A Chain A, The Structure Of Mexa
pdb|1T5E|B Chain B, The Structure Of Mexa
pdb|1T5E|C Chain C, The Structure Of Mexa
pdb|1T5E|D Chain D, The Structure Of Mexa
pdb|1T5E|E Chain E, The Structure Of Mexa
pdb|1T5E|F Chain F, The Structure Of Mexa
pdb|1T5E|G Chain G, The Structure Of Mexa
pdb|1T5E|H Chain H, The Structure Of Mexa
pdb|1T5E|I Chain I, The Structure Of Mexa
pdb|1T5E|J Chain J, The Structure Of Mexa
pdb|1T5E|K Chain K, The Structure Of Mexa
pdb|1T5E|L Chain L, The Structure Of Mexa
pdb|1T5E|M Chain M, The Structure Of Mexa
Length = 360
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 19 LEDGATVKAGQQLFKIKPTATSVVDWWSSPEEGSSAQSR 57
++G+ VKAGQQL++I P AT D+ S+ +S Q +
Sbjct: 56 FKEGSDVKAGQQLYQIDP-ATYEADYQSAQANLASTQEQ 93
>pdb|1VF7|A Chain A, Crystal Structure Of The Membrane Fusion Protein, Mexa
Of The Multidrug Transporter
pdb|1VF7|B Chain B, Crystal Structure Of The Membrane Fusion Protein, Mexa
Of The Multidrug Transporter
pdb|1VF7|C Chain C, Crystal Structure Of The Membrane Fusion Protein, Mexa
Of The Multidrug Transporter
pdb|1VF7|D Chain D, Crystal Structure Of The Membrane Fusion Protein, Mexa
Of The Multidrug Transporter
pdb|1VF7|E Chain E, Crystal Structure Of The Membrane Fusion Protein, Mexa
Of The Multidrug Transporter
pdb|1VF7|F Chain F, Crystal Structure Of The Membrane Fusion Protein, Mexa
Of The Multidrug Transporter
pdb|1VF7|G Chain G, Crystal Structure Of The Membrane Fusion Protein, Mexa
Of The Multidrug Transporter
pdb|1VF7|H Chain H, Crystal Structure Of The Membrane Fusion Protein, Mexa
Of The Multidrug Transporter
pdb|1VF7|I Chain I, Crystal Structure Of The Membrane Fusion Protein, Mexa
Of The Multidrug Transporter
pdb|1VF7|J Chain J, Crystal Structure Of The Membrane Fusion Protein, Mexa
Of The Multidrug Transporter
pdb|1VF7|K Chain K, Crystal Structure Of The Membrane Fusion Protein, Mexa
Of The Multidrug Transporter
pdb|1VF7|L Chain L, Crystal Structure Of The Membrane Fusion Protein, Mexa
Of The Multidrug Transporter
pdb|1VF7|M Chain M, Crystal Structure Of The Membrane Fusion Protein, Mexa
Of The Multidrug Transporter
Length = 369
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 19 LEDGATVKAGQQLFKIKPTATSVVDWWSSPEEGSSAQSR 57
++G+ VKAGQQL++I P AT D+ S+ +S Q +
Sbjct: 59 FKEGSDVKAGQQLYQIDP-ATYEADYQSAQANLASTQEQ 96
>pdb|2V4D|A Chain A, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|B Chain B, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|C Chain C, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|D Chain D, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|E Chain E, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|F Chain F, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|G Chain G, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|H Chain H, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|I Chain I, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|J Chain J, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|K Chain K, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|L Chain L, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|M Chain M, Re-Refinement Of Mexa Adaptor Protein
Length = 360
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 19 LEDGATVKAGQQLFKIKPTATSVVDWWSSPEEGSSAQSR 57
++G+ VKAGQQL++I P AT D+ S+ +S Q +
Sbjct: 56 FKEGSDVKAGQQLYQIDP-ATYEADYQSAQANLASTQEQ 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,412,093
Number of Sequences: 62578
Number of extensions: 466157
Number of successful extensions: 942
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 892
Number of HSP's gapped (non-prelim): 37
length of query: 431
length of database: 14,973,337
effective HSP length: 102
effective length of query: 329
effective length of database: 8,590,381
effective search space: 2826235349
effective search space used: 2826235349
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)