Query psy14345
Match_columns 431
No_of_seqs 369 out of 2176
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 17:31:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14345.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14345hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05704 dihydrolipoamide succ 100.0 3E-68 6.5E-73 546.3 31.1 319 8-344 50-400 (407)
2 TIGR01347 sucB 2-oxoglutarate 100.0 3.8E-68 8.1E-73 544.6 31.4 319 8-344 48-396 (403)
3 KOG0559|consensus 100.0 1.7E-66 3.8E-71 503.3 24.3 228 100-344 223-450 (457)
4 PLN02744 dihydrolipoyllysine-r 100.0 4.9E-66 1.1E-70 540.9 28.5 320 8-344 160-534 (539)
5 TIGR02927 SucB_Actino 2-oxoglu 100.0 7.3E-66 1.6E-70 550.8 28.8 317 10-343 185-581 (590)
6 PLN02528 2-oxoisovalerate dehy 100.0 3E-65 6.6E-70 525.8 29.5 319 6-344 44-408 (416)
7 TIGR01349 PDHac_trf_mito pyruv 100.0 2.8E-65 6.1E-70 528.7 28.8 317 9-344 48-430 (435)
8 PTZ00144 dihydrolipoamide succ 100.0 4.7E-64 1E-68 513.1 32.3 314 7-344 91-411 (418)
9 PLN02226 2-oxoglutarate dehydr 100.0 4.8E-64 1E-68 516.3 32.4 223 105-344 234-456 (463)
10 TIGR01348 PDHac_trf_long pyruv 100.0 2E-64 4.4E-69 535.8 30.1 320 7-344 162-541 (546)
11 PRK14843 dihydrolipoamide acet 100.0 6E-65 1.3E-69 511.4 23.3 258 70-344 50-342 (347)
12 PRK11857 dihydrolipoamide acet 100.0 2.5E-64 5.5E-69 499.0 23.7 259 70-345 3-301 (306)
13 COG0508 AceF Pyruvate/2-oxoglu 100.0 3.9E-62 8.4E-67 500.7 27.9 319 8-344 50-398 (404)
14 PRK11854 aceF pyruvate dehydro 100.0 3.6E-60 7.7E-65 511.8 31.5 321 7-344 251-628 (633)
15 PF00198 2-oxoacid_dh: 2-oxoac 100.0 1.9E-60 4.1E-65 455.4 25.5 224 103-344 2-226 (231)
16 PRK11855 dihydrolipoamide acet 100.0 3.5E-58 7.7E-63 489.7 30.3 321 6-344 164-542 (547)
17 PRK11856 branched-chain alpha- 100.0 9.6E-57 2.1E-61 464.2 29.8 312 11-344 53-405 (411)
18 KOG0558|consensus 100.0 6.3E-55 1.4E-59 421.0 19.2 309 14-344 118-466 (474)
19 KOG0557|consensus 100.0 1.4E-54 2.9E-59 435.6 20.8 316 9-344 87-465 (470)
20 PRK12270 kgd alpha-ketoglutara 100.0 3.4E-52 7.4E-57 445.8 27.7 226 104-342 114-349 (1228)
21 PF00198 2-oxoacid_dh: 2-oxoac 99.9 7E-23 1.5E-27 196.3 12.7 106 323-431 34-140 (231)
22 PRK14843 dihydrolipoamide acet 99.9 7E-23 1.5E-27 206.7 12.9 105 325-431 150-256 (347)
23 PRK11857 dihydrolipoamide acet 99.9 1.4E-22 2.9E-27 201.3 12.8 107 323-431 106-214 (306)
24 PLN02226 2-oxoglutarate dehydr 99.9 1.3E-22 2.8E-27 209.8 12.8 113 312-431 258-370 (463)
25 TIGR01347 sucB 2-oxoglutarate 99.9 2.8E-22 6.1E-27 206.1 13.0 106 324-431 205-310 (403)
26 PTZ00144 dihydrolipoamide succ 99.9 2.6E-22 5.5E-27 206.1 12.6 113 312-431 213-325 (418)
27 PRK05704 dihydrolipoamide succ 99.9 3.2E-22 7E-27 206.0 12.9 106 324-431 209-314 (407)
28 TIGR02927 SucB_Actino 2-oxoglu 99.9 5.3E-22 1.2E-26 213.2 12.8 106 324-431 384-491 (590)
29 PLN02744 dihydrolipoyllysine-r 99.9 6.5E-22 1.4E-26 208.4 12.5 106 324-431 340-445 (539)
30 TIGR01349 PDHac_trf_mito pyruv 99.9 1.9E-21 4E-26 202.1 12.3 104 324-431 238-341 (435)
31 PLN02528 2-oxoisovalerate dehy 99.8 4.1E-21 8.9E-26 198.5 12.8 105 324-431 215-321 (416)
32 TIGR01348 PDHac_trf_long pyruv 99.8 6.7E-21 1.5E-25 203.1 13.0 105 324-431 349-455 (546)
33 PRK12270 kgd alpha-ketoglutara 99.8 5.4E-20 1.2E-24 199.1 10.5 118 312-431 129-259 (1228)
34 KOG0559|consensus 99.8 1.3E-19 2.7E-24 177.3 10.4 105 325-431 260-364 (457)
35 KOG0558|consensus 99.8 7.3E-20 1.6E-24 178.1 5.2 130 299-431 243-379 (474)
36 PRK11854 aceF pyruvate dehydro 99.8 2E-18 4.3E-23 187.4 13.0 107 324-431 434-542 (633)
37 COG0508 AceF Pyruvate/2-oxoglu 99.8 2.3E-18 5E-23 177.4 11.8 104 325-431 207-312 (404)
38 PRK11855 dihydrolipoamide acet 99.7 5.4E-17 1.2E-21 173.7 12.4 104 325-431 351-456 (547)
39 KOG0557|consensus 99.7 1.3E-17 2.8E-22 169.0 5.7 120 307-431 252-376 (470)
40 PRK11856 branched-chain alpha- 99.7 2.1E-16 4.6E-21 163.8 12.4 100 325-431 220-319 (411)
41 PF00302 CAT: Chloramphenicol 99.6 7.4E-14 1.6E-18 131.6 17.5 178 126-337 23-205 (206)
42 PRK13757 chloramphenicol acety 99.5 3.8E-13 8.2E-18 127.7 18.8 179 128-340 30-211 (219)
43 COG4845 Chloramphenicol O-acet 99.1 5.2E-09 1.1E-13 96.4 14.9 184 126-343 26-213 (219)
44 PF00302 CAT: Chloramphenicol 95.2 0.22 4.8E-06 47.2 11.0 99 312-428 26-126 (206)
45 PRK11892 pyruvate dehydrogenas 94.7 0.41 8.8E-06 50.9 12.4 66 110-178 141-213 (464)
46 PF02817 E3_binding: e3 bindin 94.1 0.016 3.5E-07 40.1 0.3 25 71-95 5-30 (39)
47 PF13533 Biotin_lipoyl_2: Biot 92.1 0.17 3.7E-06 36.7 3.2 27 11-37 10-36 (50)
48 PRK13757 chloramphenicol acety 92.0 1.6 3.5E-05 41.7 10.6 77 350-428 52-130 (219)
49 COG4845 Chloramphenicol O-acet 91.7 1.1 2.4E-05 42.0 8.8 101 310-428 27-128 (219)
50 PRK06748 hypothetical protein; 90.7 0.33 7.1E-06 39.3 3.8 26 10-35 49-74 (83)
51 PRK06748 hypothetical protein; 87.6 0.71 1.5E-05 37.4 3.7 37 3-39 4-41 (83)
52 COG0511 AccB Biotin carboxyl c 86.6 0.62 1.3E-05 41.4 3.0 22 14-35 81-102 (140)
53 PF00364 Biotin_lipoyl: Biotin 83.9 1.2 2.7E-05 34.8 3.3 26 9-34 49-74 (74)
54 PF00364 Biotin_lipoyl: Biotin 81.7 1.4 3.1E-05 34.4 2.9 27 13-39 16-42 (74)
55 PRK07051 hypothetical protein; 80.7 2.1 4.6E-05 34.0 3.6 29 7-35 51-79 (80)
56 PRK05889 putative acetyl-CoA c 80.5 1.9 4E-05 33.4 3.1 27 12-38 11-37 (71)
57 PF07247 AATase: Alcohol acety 79.5 44 0.00096 35.2 14.2 40 132-178 251-290 (480)
58 PRK08225 acetyl-CoA carboxylas 79.4 2.4 5.2E-05 32.6 3.4 22 14-35 12-33 (70)
59 PRK05889 putative acetyl-CoA c 78.6 2.3 4.9E-05 32.9 3.1 26 10-35 46-71 (71)
60 PRK08225 acetyl-CoA carboxylas 77.4 2.6 5.6E-05 32.4 3.1 20 16-35 51-70 (70)
61 TIGR02971 heterocyst_DevB ABC 73.0 3.5 7.5E-05 41.3 3.5 32 6-37 16-50 (327)
62 cd06850 biotinyl_domain The bi 71.7 5.5 0.00012 29.4 3.6 28 10-37 6-33 (67)
63 PF00529 HlyD: HlyD family sec 69.5 3.5 7.6E-05 40.3 2.6 30 8-37 6-35 (305)
64 PF07831 PYNP_C: Pyrimidine nu 67.8 5.3 0.00011 31.6 2.8 26 14-39 33-58 (75)
65 TIGR00998 8a0101 efflux pump m 65.4 5.9 0.00013 39.6 3.4 31 7-37 46-76 (334)
66 TIGR02946 acyl_WS_DGAT acyltra 65.3 1.5E+02 0.0033 30.7 14.0 40 160-205 249-288 (446)
67 PRK10559 p-hydroxybenzoic acid 62.9 7.2 0.00016 39.1 3.4 31 7-37 51-81 (310)
68 cd06850 biotinyl_domain The bi 61.1 9.3 0.0002 28.1 3.0 29 6-34 39-67 (67)
69 PRK06549 acetyl-CoA carboxylas 61.1 8.6 0.00019 33.8 3.1 31 8-38 66-96 (130)
70 COG2190 NagE Phosphotransferas 60.5 7.4 0.00016 35.2 2.7 22 16-37 90-111 (156)
71 TIGR00830 PTBA PTS system, glu 60.0 8.5 0.00018 33.4 2.8 20 17-36 84-103 (121)
72 PF12700 HlyD_2: HlyD family s 59.4 9.3 0.0002 37.7 3.5 27 10-37 28-54 (328)
73 PRK10476 multidrug resistance 59.2 9.2 0.0002 38.7 3.5 31 7-37 52-82 (346)
74 cd06663 Biotinyl_lipoyl_domain 59.0 12 0.00026 28.5 3.4 26 14-39 16-41 (73)
75 PRK09439 PTS system glucose-sp 58.6 9.1 0.0002 35.2 3.0 22 16-37 105-126 (169)
76 PF00358 PTS_EIIA_1: phosphoen 58.0 8.5 0.00018 33.9 2.5 21 16-36 87-107 (132)
77 cd00210 PTS_IIA_glc PTS_IIA, P 57.8 9.7 0.00021 33.2 2.8 20 17-36 84-103 (124)
78 TIGR03794 NHPM_micro_HlyD NHPM 57.3 9.6 0.00021 39.7 3.3 32 6-37 61-92 (421)
79 PRK03598 putative efflux pump 56.1 11 0.00024 37.8 3.4 32 6-37 46-77 (331)
80 TIGR01000 bacteriocin_acc bact 56.0 11 0.00024 39.9 3.5 32 6-37 62-93 (457)
81 PRK05641 putative acetyl-CoA c 55.4 12 0.00026 33.8 3.2 27 12-38 93-119 (153)
82 PRK15030 multidrug efflux syst 53.5 13 0.00027 38.6 3.4 30 8-37 70-99 (397)
83 PRK11556 multidrug efflux syst 52.2 14 0.00029 38.7 3.4 32 6-37 90-121 (415)
84 PRK09859 multidrug efflux syst 51.5 14 0.00031 38.0 3.4 31 7-37 65-95 (385)
85 TIGR00531 BCCP acetyl-CoA carb 51.2 11 0.00025 34.0 2.3 22 18-39 102-123 (156)
86 PRK15136 multidrug efflux syst 51.1 15 0.00032 38.1 3.4 28 10-37 68-95 (390)
87 cd06849 lipoyl_domain Lipoyl d 50.1 24 0.00052 25.5 3.7 31 8-38 11-41 (74)
88 COG0845 AcrA Membrane-fusion p 49.1 16 0.00035 35.8 3.3 32 6-37 69-100 (372)
89 PRK14875 acetoin dehydrogenase 48.7 18 0.0004 36.0 3.7 21 15-35 20-40 (371)
90 TIGR01730 RND_mfp RND family e 48.7 17 0.00037 35.7 3.4 29 9-37 32-60 (322)
91 PRK11578 macrolide transporter 48.0 18 0.00038 37.0 3.4 31 6-36 64-94 (370)
92 PRK09578 periplasmic multidrug 45.8 19 0.00041 37.0 3.3 28 10-37 70-97 (385)
93 PRK14875 acetoin dehydrogenase 45.4 19 0.00041 35.9 3.2 22 16-37 58-79 (371)
94 PRK07051 hypothetical protein; 45.3 22 0.00048 28.1 2.9 22 17-38 24-45 (80)
95 TIGR01843 type_I_hlyD type I s 45.1 21 0.00045 36.7 3.4 32 6-37 46-77 (423)
96 PF05896 NQRA: Na(+)-transloca 44.9 14 0.00031 36.2 2.0 20 16-35 42-61 (257)
97 PLN02983 biotin carboxyl carri 43.0 18 0.00038 35.6 2.3 23 17-39 218-240 (274)
98 PF13375 RnfC_N: RnfC Barrel s 42.9 15 0.00034 30.7 1.7 20 17-36 44-63 (101)
99 PRK06302 acetyl-CoA carboxylas 42.8 19 0.00041 32.5 2.4 22 18-39 101-122 (155)
100 PRK09294 acyltransferase PapA5 41.4 1.8E+02 0.0039 29.9 9.8 100 160-277 229-347 (416)
101 PRK09783 copper/silver efflux 36.0 34 0.00073 35.7 3.4 27 10-36 130-157 (409)
102 PRK14042 pyruvate carboxylase 35.5 32 0.00069 37.9 3.1 27 13-39 535-561 (596)
103 TIGR01108 oadA oxaloacetate de 32.3 38 0.00082 37.2 3.1 27 14-40 528-554 (582)
104 PF02749 QRPTase_N: Quinolinat 31.7 41 0.00089 27.1 2.5 21 15-35 47-67 (88)
105 TIGR01995 PTS-II-ABC-beta PTS 29.2 40 0.00087 37.2 2.7 22 16-37 547-568 (610)
106 PRK00624 glycine cleavage syst 28.9 49 0.0011 28.4 2.6 20 20-39 41-60 (114)
107 cd06848 GCS_H Glycine cleavage 28.1 72 0.0016 26.0 3.4 22 18-39 36-57 (96)
108 cd06663 Biotinyl_lipoyl_domain 28.0 65 0.0014 24.4 3.0 24 11-34 50-73 (73)
109 TIGR03077 not_gcvH glycine cle 27.5 51 0.0011 28.0 2.4 21 19-39 38-58 (110)
110 PRK09824 PTS system beta-gluco 27.0 46 0.00099 36.9 2.6 22 16-37 563-584 (627)
111 TIGR01936 nqrA NADH:ubiquinone 24.0 45 0.00098 35.4 1.8 21 16-36 42-62 (447)
112 PRK14040 oxaloacetate decarbox 23.7 67 0.0014 35.4 3.1 26 13-38 534-559 (593)
113 PRK10255 PTS system N-acetyl g 23.3 60 0.0013 36.2 2.6 21 17-37 584-604 (648)
114 PF03869 Arc: Arc-like DNA bin 23.1 2.4E+02 0.0051 20.3 4.9 48 126-182 2-49 (50)
115 PF14821 Thr_synth_N: Threonin 22.9 85 0.0019 24.8 2.8 27 393-419 23-58 (79)
116 PF13437 HlyD_3: HlyD family s 21.1 1.2E+02 0.0026 24.6 3.5 27 11-37 7-33 (105)
117 PRK05352 Na(+)-translocating N 21.0 57 0.0012 34.7 1.8 19 17-35 44-62 (448)
118 COG1566 EmrA Multidrug resista 20.9 86 0.0019 32.3 3.0 27 11-37 61-87 (352)
119 PRK09282 pyruvate carboxylase 20.5 85 0.0018 34.6 3.1 27 13-39 532-558 (592)
120 TIGR01235 pyruv_carbox pyruvat 20.2 83 0.0018 37.5 3.1 27 13-39 1084-1110(1143)
121 PF01551 Peptidase_M23: Peptid 20.2 1.1E+02 0.0023 24.6 3.0 21 18-38 56-76 (96)
No 1
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=100.00 E-value=3e-68 Score=546.31 Aligned_cols=319 Identities=45% Similarity=0.665 Sum_probs=268.1
Q ss_pred ccccceeeeeecCCCCeEecCceeEEEecCCCCCCCC--C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-chhhhcCC
Q psy14345 8 QNNKKFLLLASLEDGATVKAGQQLFKIKPTATSVVDW--W-SSPEEGSSAQSRGYSSSSSSSLCCCSSPSP-SLCYSSAI 83 (431)
Q Consensus 8 ~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~~~~~a~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~lA~e~gI 83 (431)
+..+-.+..+.+++||.|++|++|++|+.++++.+.. + +++++.+.+.+....+ ...+.+..++|.+ +||+|+||
T Consensus 50 a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~asP~aR~lA~e~gi 128 (407)
T PRK05704 50 APAAGVLSEILAEEGDTVTVGQVLGRIDEGAAAGAAAAAAAAAAAAAAAPAQAQAAA-AAEQSNDALSPAARKLAAENGL 128 (407)
T ss_pred cCCCEEEEEEEeCCCCEeCCCCEEEEEecCCcccccCCCCCCCCCCCCCCCCCCCCc-cCCCccccCCchhhhHHhhcCC
Confidence 4445567788999999999999999998654321100 0 0000000000000000 0111123467777 99999999
Q ss_pred CccccCCCC-------CCCCccc-----------c------C----CCCceEEeccHHHHHHHHHHHHhcccceEEEEee
Q psy14345 84 EAATVKLPP-------ADPTKEI-----------S------G----TRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFN 135 (431)
Q Consensus 84 dl~~v~gtg-------~dv~~~~-----------a------~----~~~~~~vpls~~Rk~ia~~m~~S~~~iP~~t~~~ 135 (431)
||+.++||| +|+.+.. + . ....+++||+++||+||++|++||+++||||++.
T Consensus 129 dl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpls~~rk~ia~~m~~S~~~iPh~~~~~ 208 (407)
T PRK05704 129 DASAVKGTGKGGRVTKEDVLAALAAAAAAPAAPAAAAPAAAPAPLGARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFN 208 (407)
T ss_pred ChhhCCCCCCCCcccHHHHHHHhhcccccCCCCCCCCCcCCCccccCCcceEeeChHHHHHHHHHHHHHhhcCCeEEEEE
Confidence 999999999 3442210 0 0 0013568999999999999999999999999999
Q ss_pred eccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceeeeCCeeEecCcccEEEEEeecCCCCCCccCC
Q psy14345 136 EIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNLPRWCFN 215 (431)
Q Consensus 136 evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~~~~i~~~~~v~igvav~~~~~~~~~~~~~ 215 (431)
+||+++|+++|+++|+.+.++.|.|+||++||+||+++||++||.+|++|+++++++++++||||||++ + +
T Consensus 209 evd~~~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~i~~~~~~nIgiAv~~-----~----~ 279 (407)
T PRK05704 209 EVDMTPVMDLRKQYKDAFEKKHGVKLGFMSFFVKAVVEALKRYPEVNASIDGDDIVYHNYYDIGIAVGT-----P----R 279 (407)
T ss_pred EEeHHHHHHHHHHHHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhhcEEcCCeEEEcCCCCeEEEEEC-----C----C
Confidence 999999999999999877776789999999999999999999999999999989999999999999999 8 9
Q ss_pred cEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCCCceEEEecCCCCCccceeeccCCCcceeeecc
Q psy14345 216 GLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMH 295 (431)
Q Consensus 216 gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~ggTftiSn~G~~G~~~~~pii~ppq~ail~vG 295 (431)
||+||||+|+|++| + .+|++++++|+++|| +|+|+++||+||||||||+|+||+.+|+|||||||+||||+|
T Consensus 280 GLivPVI~~a~~~s--l-----~eIa~~~~~l~~~ar-~g~L~~~d~~ggTfTiSNlG~~G~~~~tpiIn~pq~aILgvG 351 (407)
T PRK05704 280 GLVVPVLRDADQLS--F-----AEIEKKIAELAKKAR-DGKLSIEELTGGTFTITNGGVFGSLMSTPIINPPQSAILGMH 351 (407)
T ss_pred ceEeCcCCCcccCC--H-----HHHHHHHHHHHHHHH-cCCCChHHcCCceEEEecCCcccccceeccccCCcEEEEEcc
Confidence 99999999999999 9 999999999999999 999999999999999999999999999999999999999999
Q ss_pred ceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhh
Q psy14345 296 GTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQ 344 (431)
Q Consensus 296 ~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~ 344 (431)
++.++||+.+|+++++++|+++++||||+|||+.+++||+.++++.+++
T Consensus 352 ~i~~~pv~~~g~i~~r~~~~lsls~DHRviDGa~aa~Fl~~l~~~le~p 400 (407)
T PRK05704 352 KIKERPVAVNGQIVIRPMMYLALSYDHRIIDGKEAVGFLVTIKELLEDP 400 (407)
T ss_pred cceEEeEEECCEEEEEEEEEEEEEechhhhCcHHHHHHHHHHHHHhhCH
Confidence 9999999999999999999999999999999999999999999877764
No 2
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=100.00 E-value=3.8e-68 Score=544.56 Aligned_cols=319 Identities=47% Similarity=0.680 Sum_probs=268.0
Q ss_pred ccccceeeeeecCCCCeEecCceeEEEecCCCCCC-C--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-chhhhcCC
Q psy14345 8 QNNKKFLLLASLEDGATVKAGQQLFKIKPTATSVV-D--WWSSPEEGSSAQSRGYSSSSSSSLCCCSSPSP-SLCYSSAI 83 (431)
Q Consensus 8 ~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~~~~~a-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~lA~e~gI 83 (431)
+..+-.+..+.+++||.|+||++|++|+.+++.++ + ++++++....+.+... ++.....+..++|.+ +||+|+||
T Consensus 48 a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~asP~aR~lA~e~gv 126 (403)
T TIGR01347 48 SPADGVLQEILFKEGDTVESGQVLAILEEGNDATAAPPAKSGEEKEETPAASAAA-APTAAANRPSLSPAARRLAKEHGI 126 (403)
T ss_pred cCCCEEEEEEEeCCCCEeCCCCEEEEEecCCCCcccccccccCCCCCCCCCCCCC-CCcCccccccCCchhhhHHHHcCC
Confidence 44556777889999999999999999986532211 0 0000000000000000 000111122467777 99999999
Q ss_pred CccccCCCC-------CCCCccc---------cC----------CCCceEEeccHHHHHHHHHHHHhcccceEEEEeeec
Q psy14345 84 EAATVKLPP-------ADPTKEI---------SG----------TRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEI 137 (431)
Q Consensus 84 dl~~v~gtg-------~dv~~~~---------a~----------~~~~~~vpls~~Rk~ia~~m~~S~~~iP~~t~~~ev 137 (431)
||+.|+||| .|+.+.. +. ....+.+||++|||+||++|++||+++||||++.++
T Consensus 127 dl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~r~~ia~~m~~S~~~ip~~~~~~ev 206 (403)
T TIGR01347 127 DLSAVPGTGVTGRVTKEDIIKKTEAPASAQAPAPAAAAKAPANFTRPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEV 206 (403)
T ss_pred ChhhCCCCCCCCcccHHHHHHhhhcccccCCCCCCcccCCccccCCCceEeeCcHHHHHHHHHHHHHhccCCEEEEEEEE
Confidence 999999999 3332210 00 011346899999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceeeeCCeeEecCcccEEEEEeecCCCCCCccCCcE
Q psy14345 138 DMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNLPRWCFNGL 217 (431)
Q Consensus 138 D~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~~~~i~~~~~v~igvav~~~~~~~~~~~~~gL 217 (431)
|+++|+++|+++++.+.++.|.|+||++||+||++.||++||.||++|++++|++++++||||||++ + +||
T Consensus 207 d~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~i~~~~~vnIgvAv~~-----~----~GL 277 (403)
T TIGR01347 207 DMSAVMELRKRYKEEFEKKHGVKLGFMSFFVKAVVAALKRFPEVNAEIDGDDIVYKDYYDISVAVST-----D----RGL 277 (403)
T ss_pred EHHHHHHHHHHHHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhheEEcCCEEEEcCCCCeEEEEEC-----C----CCe
Confidence 9999999999999877777789999999999999999999999999999999999999999999999 8 999
Q ss_pred EEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCCCceEEEecCCCCCccceeeccCCCcceeeeccce
Q psy14345 218 LSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGT 297 (431)
Q Consensus 218 ~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~ggTftiSn~G~~G~~~~~pii~ppq~ail~vG~i 297 (431)
++||||++|++| + .+|++++++|+++|| +|+|+++||+||||||||+|+||+.+|+|||||||+||||+|++
T Consensus 278 ~vPVIr~ad~~s--l-----~eIa~~~~~l~~~ar-~gkL~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aILgvG~i 349 (403)
T TIGR01347 278 VVPVVRNADRMS--F-----ADIEKEIADLGKKAR-DGKLTLEDMTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHGI 349 (403)
T ss_pred EECcCCCcccCC--H-----HHHHHHHHHHHHHHH-cCCCChhhcCCceEEEecCCcCcccceeccccCCceEEEecccc
Confidence 999999999999 9 999999999999999 99999999999999999999999999999999999999999999
Q ss_pred eEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhh
Q psy14345 298 FERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQ 344 (431)
Q Consensus 298 ~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~ 344 (431)
+++|++.+|++.++++|+++++||||+|||+.+++||+.++++.+.+
T Consensus 350 ~~~pv~~~g~i~~r~~m~lsLt~DHRviDGa~aa~Fl~~l~~~le~p 396 (403)
T TIGR01347 350 KERPVAVNGQIEIRPMMYLALSYDHRLIDGKEAVTFLVTIKELLEDP 396 (403)
T ss_pred eEEEEEECCeEEEEEEEEEEEEecchhhChHHHHHHHHHHHHHhcCH
Confidence 99999999999999999999999999999999999999999877654
No 3
>KOG0559|consensus
Probab=100.00 E-value=1.7e-66 Score=503.34 Aligned_cols=228 Identities=66% Similarity=0.976 Sum_probs=222.1
Q ss_pred cCCCCceEEeccHHHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCC
Q psy14345 100 SGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQP 179 (431)
Q Consensus 100 a~~~~~~~vpls~~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P 179 (431)
...+.+++++|++||++||+||.+|+++...+|.+.||||++|+++|++++++|-+++|.|+.||.+|+||++.||++.|
T Consensus 223 ~~~R~E~RVkMnRmR~RIA~RLKdsQNt~A~LTTFNEvDMS~lm~mRk~ykdaf~kKhGvKlGfMs~F~KA~~~Alq~qP 302 (457)
T KOG0559|consen 223 TPSRSERRVKMNRMRLRIAERLKDSQNTAAMLTTFNEVDMSNLMEMRKQYKDAFLKKHGVKLGFMSGFSKAAAYALQDQP 302 (457)
T ss_pred CCCcchhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhCceeeehhHHHHHHHHHhhhCc
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeCCeeEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCc
Q psy14345 180 VVNAVIEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAI 259 (431)
Q Consensus 180 ~~N~~~~~~~i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~ 259 (431)
.+|+.++|+.|+|+++|||+|||+| | +||+||||||+|.|+ + .||..++..|..+|| +|+|+.
T Consensus 303 vVNavIdg~~iVYRDyvDISvAVaT-----p----kGLVvPViRnae~Mn--~-----adIE~~i~~L~~KAr-~g~lai 365 (457)
T KOG0559|consen 303 VVNAVIDGDDIVYRDYVDISVAVAT-----P----KGLVVPVIRNAESMN--F-----ADIEKTIAGLGKKAR-DGKLAI 365 (457)
T ss_pred ceeeeecCCeeEEeecceeEEEeec-----C----Cceeeeeeccccccc--H-----HHHHHHHHHHHHhhc-cCceee
Confidence 9999999999999999999999999 9 999999999999999 9 999999999999999 999999
Q ss_pred ccCCCceEEEecCCCCCccceeeccCCCcceeeeccceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHh
Q psy14345 260 EDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAH 339 (431)
Q Consensus 260 ~~~~ggTftiSn~G~~G~~~~~pii~ppq~ail~vG~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~ 339 (431)
+||.||||||||.|.||..++||||||||+|||||++|.+||++++|+++.|||||+.||||||+|||.++..||+.+|+
T Consensus 366 edM~gGTFTISNGGVfGSL~gTPIINpPQsAILGmHgI~eRPv~v~G~Vv~RPMMYvALTYDHRliDGREAVtFLr~iK~ 445 (457)
T KOG0559|consen 366 EDMAGGTFTISNGGVFGSLYGTPIINPPQSAILGMHGIKERPVVVGGQVVPRPMMYVALTYDHRLIDGREAVTFLRKIKE 445 (457)
T ss_pred eeccCceEEEeCCcEeeeeccCcccCCchhhhhhcccccccceeeCCEeeeccceEEEeeccccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Hhhhh
Q psy14345 340 LEAFQ 344 (431)
Q Consensus 340 l~~~~ 344 (431)
.-+.+
T Consensus 446 ~VEDP 450 (457)
T KOG0559|consen 446 AVEDP 450 (457)
T ss_pred HhhCH
Confidence 65544
No 4
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=100.00 E-value=4.9e-66 Score=540.92 Aligned_cols=320 Identities=24% Similarity=0.252 Sum_probs=264.3
Q ss_pred ccccceeeeeecCCCC-eEecCceeEEEecCCCCC----------C--CC-CC---CC---CCC--CCCCCCCCC-C-C-
Q psy14345 8 QNNKKFLLLASLEDGA-TVKAGQQLFKIKPTATSV----------V--DW-WS---SP---EEG--SSAQSRGYS-S-S- 62 (431)
Q Consensus 8 ~~~~~~~l~~~~~eGd-~v~VG~~L~~Ie~~~~~~----------a--~~-~~---~~---~~~--~~~~~~~~~-~-~- 62 (431)
+...-+|..+.+++|+ +|+||++|+.|..++++. + +. ++ .+ ..+ +.+.+...+ + .
T Consensus 160 a~~~G~l~ki~~~eG~~~v~vG~~ia~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
T PLN02744 160 CMEEGYLAKIVKGDGAKEIKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKP 239 (539)
T ss_pred CCCCcEEEEEEecCCCcccCCCCEEEEEccCccccccccccccccccccccccccCCCCCcccccccCCCCCcccccccc
Confidence 4456788899999996 899999999995332210 0 00 00 00 000 000000000 0 0
Q ss_pred -CCC-C-CCCCCCCCC-chhhhcCCCccccCCCCC-------CCCcccc----------C------CCCceEEeccHHHH
Q psy14345 63 -SSS-S-LCCCSSPSP-SLCYSSAIEAATVKLPPA-------DPTKEIS----------G------TRSEQRVKMNRMRQ 115 (431)
Q Consensus 63 -~~~-~-~~~~~sp~~-~lA~e~gIdl~~v~gtg~-------dv~~~~a----------~------~~~~~~vpls~~Rk 115 (431)
.+. . .+..++|.+ +||+|+||||+.++|||. |+.+..+ . ...++++|+++|||
T Consensus 240 ~~~~~~~~~i~ASP~aRrLAre~GVDLs~V~GTGp~GRI~k~DV~a~~~~~~~~~~~~~~~~~~~~~~~~~~vpls~~Rk 319 (539)
T PLN02744 240 SAPPSSGDRIFASPLARKLAEDNNVPLSSIKGTGPDGRIVKADIEDYLASGGKGATAPPSTDSKAPALDYTDIPNTQIRK 319 (539)
T ss_pred cccccccccccCCchhHHHHHHcCCCHHHCCCCCCCCcccHHHHHHHhhccccccCCCCCcccCCCCCccccccchhHHH
Confidence 000 1 112356766 999999999999999993 4322100 0 00135789999999
Q ss_pred HHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceeeeCCeeEecCc
Q psy14345 116 RIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDY 195 (431)
Q Consensus 116 ~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~~~~i~~~~~ 195 (431)
.||++|++|++++||||++.+||+++|+++|+++|+.+.+..|.|+||++||+||++.||++||++|++|+++.|+++++
T Consensus 320 ~IA~~m~~S~~~iPh~t~~~evdvt~L~~lR~~l~~~~~~~~g~kls~~~~liKA~a~AL~~~P~lNa~~~~~~i~~~~~ 399 (539)
T PLN02744 320 VTASRLLQSKQTIPHYYLTVDTRVDKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWTDDYIRQYHN 399 (539)
T ss_pred HHHHHHHHHHhhCCeEEEEEEEEcHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHHHhCcHhheeeccCcEEEeCC
Confidence 99999999999999999999999999999999999776666689999999999999999999999999999999999999
Q ss_pred ccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCCCceEEEecCC-C
Q psy14345 196 VDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGG-V 274 (431)
Q Consensus 196 v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~ggTftiSn~G-~ 274 (431)
|||||||++ + +||+||||+|+|+++ + .||++++++|+++|| +|+|+++||+||||||||+| |
T Consensus 400 vnIgvAV~t-----~----~GL~vPVIr~ad~~s--l-----~eIa~ei~~L~~kAr-~~kL~~~dl~GGTfTISNlGg~ 462 (539)
T PLN02744 400 VNINVAVQT-----E----NGLYVPVVKDADKKG--L-----STIAEEVKQLAQKAR-ENSLKPEDYEGGTFTVSNLGGP 462 (539)
T ss_pred cceEEEEEC-----C----CCeEECcCCCcccCC--H-----HHHHHHHHHHHHHHH-cCCCChhhcCCceEEEeCCCcc
Confidence 999999999 8 999999999999999 9 999999999999999 99999999999999999997 8
Q ss_pred CCccceeeccCCCcceeeeccceeEEEee--eCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhh
Q psy14345 275 FGSLLGTPIINPPQSAILGMHGTFERPVA--IKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQ 344 (431)
Q Consensus 275 ~G~~~~~pii~ppq~ail~vG~i~~~pv~--~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~ 344 (431)
||+++|+|||||||+||||+|+++++||+ .+|+++++++|+++++||||+|||+.+++||+.++++.+++
T Consensus 463 ~G~~~ftpIInpPqvaILgvG~i~~~pvv~~~~g~i~~r~~m~lsLs~DHRvIDGa~AA~FL~~lk~~LE~P 534 (539)
T PLN02744 463 FGIKQFCAIINPPQSAILAVGSAEKRVIPGSGPDQYNFASFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENP 534 (539)
T ss_pred cccceeeccccCCcEEEEEcccceeEeEEeccCCeEEEeeeeEEeEecchhhhCcHHHHHHHHHHHHHhcCH
Confidence 99999999999999999999999999998 48899999999999999999999999999999999877654
No 5
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=100.00 E-value=7.3e-66 Score=550.84 Aligned_cols=317 Identities=30% Similarity=0.396 Sum_probs=260.7
Q ss_pred ccceeeeeecCCCCeEecCceeEEEecCCCCCC------CCC-C------CCCCCCCC------CC---C----CCC--C
Q psy14345 10 NKKFLLLASLEDGATVKAGQQLFKIKPTATSVV------DWW-S------SPEEGSSA------QS---R----GYS--S 61 (431)
Q Consensus 10 ~~~~~l~~~~~eGd~v~VG~~L~~Ie~~~~~~a------~~~-~------~~~~~~~~------~~---~----~~~--~ 61 (431)
..-+|..+.+++||+|+||++|++|+.++++.+ ++. + ++.+...+ ++ . ... +
T Consensus 185 ~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (590)
T TIGR02927 185 VAGTILEILAEEDDTVDVGAEIAKIGDAGAAAAEDAKAEEEAEAKAEAKPEEKPDPKKDEAAEPEPDEPEAEKAEKKEEK 264 (590)
T ss_pred CCeEEEEEecCCCCEecCCCEEEEEecCCCccccccccccccccccccccCCCCcccccccccccccccccccccccccc
Confidence 445677889999999999999999985442210 000 0 00000000 00 0 000 0
Q ss_pred CCC---C-C-CCCCCCCCC-chhhhcCCCccccCCCC-------CCCCcc-----------c--------cC-----C--
Q psy14345 62 SSS---S-S-LCCCSSPSP-SLCYSSAIEAATVKLPP-------ADPTKE-----------I--------SG-----T-- 102 (431)
Q Consensus 62 ~~~---~-~-~~~~~sp~~-~lA~e~gIdl~~v~gtg-------~dv~~~-----------~--------a~-----~-- 102 (431)
..+ . . .+..++|.+ +||+|+||||+.|+||| +|+... . +. .
T Consensus 265 ~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~GtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (590)
T TIGR02927 265 AAAAPAANSDGSPYVTPLVRKLAAEHGIDLNSVKGTGIGGRIRKQDVLAAAEGAKAAAEAPAAEAAAAAPAAAAAASASP 344 (590)
T ss_pred ccccccccccCcccCCchhHHHHHHcCCCHHHCCCCCCCCeEeHHHHHHHHhccccccccccccccccCccccccccCCC
Confidence 000 0 0 123456776 99999999999999999 232110 0 00 0
Q ss_pred ------CCceEEeccHHHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHh
Q psy14345 103 ------RSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQ 176 (431)
Q Consensus 103 ------~~~~~vpls~~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~ 176 (431)
..++++||++|||.||++|++||+++||||++.+||||+|+++|+++|+.+.+++|.|+||++||+||++.||+
T Consensus 345 ~~~~~~~~~~~~pls~~rk~ia~~m~~S~~~iPh~~~~~evdvt~l~~~R~~l~~~~~~~~~~kls~~~~iiKA~a~AL~ 424 (590)
T TIGR02927 345 APAKAHLRGTTQKANRIREITAKKTREALQASAQLTQLHEVDMTKIAALRARAKAAFAEKEGVNLTFLPFFAKAVIDALK 424 (590)
T ss_pred ccccccccCceeeccHHHHHHHHHHHHHhccCCeEEEEeEEEcHHHHHHHHHHHhhhHHhcCCcccHHHHHHHHHHHHHH
Confidence 02457899999999999999999999999999999999999999999976666668999999999999999999
Q ss_pred hCCccceeeeC--CeeEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhc
Q psy14345 177 DQPVVNAVIEG--TDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLN 254 (431)
Q Consensus 177 ~~P~~N~~~~~--~~i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~ 254 (431)
+||.||++|++ +.|+++++|||||||++ + +||+||||+|+++|+ + .+|++++++|+++|| +
T Consensus 425 ~~P~~Na~~~~~~~~i~~~~~vnigvAv~t-----~----~GL~vPvIk~a~~~s--l-----~~ia~~i~~l~~kAr-~ 487 (590)
T TIGR02927 425 AHPNVNASYNADTKEITYHAAEHLGFAVDT-----D----AGLLSPVIHNAGDLS--L-----GEIAKAIADIAARAR-N 487 (590)
T ss_pred hCCHhheEEecCCCEEEEeCCccEEEEEEC-----C----CCcEecccCCcccCC--H-----HHHHHHHHHHHHHHH-c
Confidence 99999999974 58999999999999999 8 999999999999999 9 999999999999999 9
Q ss_pred CCCCcccCCCceEEEecCCCCCccceeeccCCCcceeeeccceeEEEeeeC---C--eEEEeeeeeeeeeeeeeeeehHH
Q psy14345 255 WNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIK---G--QVVVKPMMYVALTYDHRLIDGRE 329 (431)
Q Consensus 255 g~L~~~~~~ggTftiSn~G~~G~~~~~pii~ppq~ail~vG~i~~~pv~~~---g--~~~~~~~m~lslt~DHRvIDg~~ 329 (431)
|+|+++||+||||||||+||||+++|+|||||||+||||+|+++++|++.+ | +++++++|++||+||||+|||+.
T Consensus 488 gkL~p~e~~GgTfTISNlG~~G~~~~tpIIn~PqvaILgvG~i~~~pv~~~~~~g~~~~~~~~~m~lsls~DHRviDGa~ 567 (590)
T TIGR02927 488 GKLKPDDLAGGTFTITNIGSEGALFDTPILIPPQAAILGTGAIVKRPRVITDEDGIDSIAIRQMCHLPLTYDHQLIDGAD 567 (590)
T ss_pred CCCChHHhCCCeEEEECCCCCCccceeceecCCCeEEEEcccceEEEEEeccCCCcccEEEEeeEEEeeeccchhcCcHH
Confidence 999999999999999999999999999999999999999999999999862 3 49999999999999999999999
Q ss_pred HHHHHHHHHhHhhh
Q psy14345 330 AVLFLQKEAHLEAF 343 (431)
Q Consensus 330 a~~fl~~lk~l~~~ 343 (431)
+++||+.|+++.++
T Consensus 568 aa~Fl~~lk~~LE~ 581 (590)
T TIGR02927 568 AGRFLTTIKDRLEE 581 (590)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999987664
No 6
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=100.00 E-value=3e-65 Score=525.80 Aligned_cols=319 Identities=21% Similarity=0.292 Sum_probs=262.5
Q ss_pred ccccccceeeeeecCCCCeEecCceeEEEecCCCCCCC--CCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCC-chhhh
Q psy14345 6 LKQNNKKFLLLASLEDGATVKAGQQLFKIKPTATSVVD--WWSSPEEGSSAQSRGYS--SSSSSSLCCCSSPSP-SLCYS 80 (431)
Q Consensus 6 ~~~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~~~~~a~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~sp~~-~lA~e 80 (431)
+.++.+-.+..+.+++||.|++|++|++|+.++++.+. +.+++.+ +.+.+.... +....+....++|.+ +||+|
T Consensus 44 v~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e 122 (416)
T PLN02528 44 ITSRYKGKVAQINFSPGDIVKVGETLLKIMVEDSQHLRSDSLLLPTD-SSNIVSLAESDERGSNLSGVLSTPAVRHLAKQ 122 (416)
T ss_pred EecCCCEEEEEEEeCCCCEeCCCCEEEEEeccCCccccccCCCCCCC-CccCCCCCCCCccccccCCccCChHHHHHHHH
Confidence 34556667777899999999999999999855432110 0001100 000000000 000011122456766 99999
Q ss_pred cCCCccccCCCC-------CCCCccc----------------cCC-------------C--CceEEeccHHHHHHHHHHH
Q psy14345 81 SAIEAATVKLPP-------ADPTKEI----------------SGT-------------R--SEQRVKMNRMRQRIAQRLK 122 (431)
Q Consensus 81 ~gIdl~~v~gtg-------~dv~~~~----------------a~~-------------~--~~~~vpls~~Rk~ia~~m~ 122 (431)
+|||++.++||| .|+.+.. +.. . ..+++||+++||+||++|+
T Consensus 123 ~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~ 202 (416)
T PLN02528 123 YGIDLNDILGTGKDGRVLKEDVLKYAAQKGVVKDSSSAEEATIAEQEEFSTSVSTPTEQSYEDKTIPLRGFQRAMVKTMT 202 (416)
T ss_pred hCCCHHHCCCCCCCCcEeHHHHHHHhhcccccccccccccccCCccccccccCCCcccccCcceeeccchHHHHHHHHHH
Confidence 999999999998 2321100 000 0 1346899999999999999
Q ss_pred HhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceeeeCC--eeEecCcccEEE
Q psy14345 123 EAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGT--DIVYRDYVDISV 200 (431)
Q Consensus 123 ~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~~~--~i~~~~~v~igv 200 (431)
+|+ ++||||++.+||+++|+++|+++++... ..|.|+||++||+||+++||++||.+|++|+++ .|++++++||||
T Consensus 203 ~S~-~ip~~~~~~eid~~~l~~~r~~~~~~~~-~~g~kls~~~~likA~a~aL~~~P~~Na~~~~~~~~i~~~~~vnIgi 280 (416)
T PLN02528 203 AAA-KVPHFHYVEEINVDALVELKASFQENNT-DPTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGV 280 (416)
T ss_pred hcC-cCCeEEEEEEEEhHHHHHHHHHHhhhhh-hcCCcccHHHHHHHHHHHHHHhCchhhEEEecCCceEEEeCCCCeEE
Confidence 997 9999999999999999999999986533 348999999999999999999999999999864 799999999999
Q ss_pred EEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCCCceEEEecCCCCCccce
Q psy14345 201 GMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLG 280 (431)
Q Consensus 201 av~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~ggTftiSn~G~~G~~~~ 280 (431)
||++ + +||++|||+++++++ + .+|++++++|+++|| +|+|+++||+||||||||+||||+++|
T Consensus 281 Av~~-----~----~GL~vPvi~~a~~~s--l-----~eI~~~~~~l~~~ar-~gkL~~~dl~ggTftiSNlG~~G~~~~ 343 (416)
T PLN02528 281 AMAT-----E----HGLVVPNIKNVQSLS--L-----LEITKELSRLQHLAA-ENKLNPEDITGGTITLSNIGAIGGKFG 343 (416)
T ss_pred EEeC-----C----CCeEecccCCcccCC--H-----HHHHHHHHHHHHHHH-cCCCCHHHhCCceEEEeCCccccCCce
Confidence 9999 8 999999999999999 9 999999999999999 999999999999999999999999999
Q ss_pred eeccCCCcceeeeccceeEEEeee-CCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhh
Q psy14345 281 TPIINPPQSAILGMHGTFERPVAI-KGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQ 344 (431)
Q Consensus 281 ~pii~ppq~ail~vG~i~~~pv~~-~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~ 344 (431)
+|||||||+||||+|++.++|++. +|++.++++|+++++||||+|||+.+++||+.++++.+++
T Consensus 344 tpIin~pq~aIlgvG~i~~~pv~~~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~le~P 408 (416)
T PLN02528 344 SPVLNLPEVAIIALGRIQKVPRFVDDGNVYPASIMTVTIGADHRVLDGATVARFCNEWKSYVEKP 408 (416)
T ss_pred ECcccCCceEEEEcccceEEeEEeCCCcEEEEeEEEEeEeccchhcCcHHHHHHHHHHHHHHhCH
Confidence 999999999999999999999997 5899999999999999999999999999999999877765
No 7
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=100.00 E-value=2.8e-65 Score=528.74 Aligned_cols=317 Identities=26% Similarity=0.291 Sum_probs=261.9
Q ss_pred cccceeeeeecCCCCe-EecCceeEEEecCCCCCC--------------CCCCCC--CCC---CCC--CCCCC--CCC--
Q psy14345 9 NNKKFLLLASLEDGAT-VKAGQQLFKIKPTATSVV--------------DWWSSP--EEG---SSA--QSRGY--SSS-- 62 (431)
Q Consensus 9 ~~~~~~l~~~~~eGd~-v~VG~~L~~Ie~~~~~~a--------------~~~~~~--~~~---~~~--~~~~~--~~~-- 62 (431)
-.+-.+..+.+++||+ |+||++|+.|+.++++.+ ++.+++ +.. +.+ .+... ++.
T Consensus 48 ~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (435)
T TIGR01349 48 VEEGYLAKILVPEGTKDVPVNKPIAVLVEEKEDVADAFKNYKLESSASAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSSP 127 (435)
T ss_pred CCCEEEEEEEECCCCEEecCCCEEEEEeccCCccccccccccccccccCCCCcccccCCCCcCCCCCCCccccccccccc
Confidence 3445688889999999 999999999975432210 000000 000 000 00000 000
Q ss_pred CC---C-C-CCCCCCCCC-chhhhcCCCccccCCCC-------CCCCccc------------cC------------CCCc
Q psy14345 63 SS---S-S-LCCCSSPSP-SLCYSSAIEAATVKLPP-------ADPTKEI------------SG------------TRSE 105 (431)
Q Consensus 63 ~~---~-~-~~~~~sp~~-~lA~e~gIdl~~v~gtg-------~dv~~~~------------a~------------~~~~ 105 (431)
.. . . .+.+++|.+ +||+|+||||+.|+||| +|+.... +. ....
T Consensus 128 ~~~~~~~~~~~~~asP~vR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (435)
T TIGR01349 128 APLSDKESGDRIFASPLAKKLAKEKGIDLSAVAGSGPNGRIVKKDIESFVPQSPASANFQAAATTPATKKAAAPVSTGSY 207 (435)
T ss_pred cccccccccccccCCHHHHHHHHHcCCCHhHCCCCCCCCceeHHHHHHHHhcccccCCCccccccccccccCCCccCCcc
Confidence 00 0 0 112356666 99999999999999999 2332110 00 0013
Q ss_pred eEEeccHHHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceee
Q psy14345 106 QRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI 185 (431)
Q Consensus 106 ~~vpls~~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~ 185 (431)
+++||++|||.|+++|++|++++||||++.+||+|+|+++|+++++.+.+ |.|+||++||+||+++||++||.||++|
T Consensus 208 ~~v~ls~~rk~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~--~~klt~~~~l~kA~a~AL~~~P~~Na~~ 285 (435)
T TIGR01349 208 EDVPLSNIRKIIAKRLLESKQTIPHYYVSIECNVDKLLALRKELNAMASE--VYKLSVNDFIIKASALALREVPEANSSW 285 (435)
T ss_pred eeecccHHHHHHHHHHHHHHhhCCeEEEEEEEEhHHHHHHHHHHHhhhhc--CCcccHHHHHHHHHHHHHHhCcHhheEE
Confidence 57899999999999999999999999999999999999999999875433 7899999999999999999999999999
Q ss_pred eCCeeEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCCCc
Q psy14345 186 EGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGG 265 (431)
Q Consensus 186 ~~~~i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~gg 265 (431)
++++|+++++|||||||++ + +||++|||+|+|+|| + .+|++++++|+++|| +|+|+++||+||
T Consensus 286 ~~~~i~~~~~vnigvAv~~-----~----~GL~vPvi~~a~~~s--l-----~eia~~i~~l~~~ar-~~~L~~~d~~gg 348 (435)
T TIGR01349 286 TDNFIRRYKNVDISVAVAT-----P----DGLITPIVRNADAKG--L-----STISNEIKDLAKRAR-NNKLKPEEFQGG 348 (435)
T ss_pred eCCeEEEeCCeeEEEEEEC-----C----CCeEECCCCCcccCC--H-----HHHHHHHHHHHHHHh-cCCCChhhcCCC
Confidence 9999999999999999999 8 999999999999999 9 999999999999999 999999999999
Q ss_pred eEEEecCCCCCccceeeccCCCcceeeeccceeEEEeeeCCe---EEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhh
Q psy14345 266 TFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQ---VVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEA 342 (431)
Q Consensus 266 TftiSn~G~~G~~~~~pii~ppq~ail~vG~i~~~pv~~~g~---~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~ 342 (431)
||||||+|+||+++|+|||||||+||||+|++.++|++.+|+ ++++++|+++|+||||+|||+.+++||+.++++.+
T Consensus 349 TfTISNlG~~G~~~~tpiin~pq~aIlgvG~i~~~pv~~~~~~~~i~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE 428 (435)
T TIGR01349 349 TFTISNLGMFGIKDFTAIINPPQACILAVGAVEDVAVVDNDEEKGFAVASIMSVTLSCDHRVIDGAVGAEFLKSFKKYLE 428 (435)
T ss_pred eEEEecCCccCccceECccCCCceEEEEcccceEEeEEeCCccceeEEeeeEEEeEeecchhhCcHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998887 99999999999999999999999999999998776
Q ss_pred hh
Q psy14345 343 FQ 344 (431)
Q Consensus 343 ~~ 344 (431)
.+
T Consensus 429 ~p 430 (435)
T TIGR01349 429 NP 430 (435)
T ss_pred CH
Confidence 54
No 8
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=100.00 E-value=4.7e-64 Score=513.12 Aligned_cols=314 Identities=47% Similarity=0.705 Sum_probs=253.4
Q ss_pred cccccceeeeeecCCCCeEecCceeEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-chhhhcCCCc
Q psy14345 7 KQNNKKFLLLASLEDGATVKAGQQLFKIKPTATSVVDWWSSPEEGSSAQSRGYSSSSSSSLCCCSSPSP-SLCYSSAIEA 85 (431)
Q Consensus 7 ~~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~lA~e~gIdl 85 (431)
.+..+-++..+.+++||.|++|++|++|+.++++.+++. .++..+.+. .+..+ ......|.+ ++|.+.+++.
T Consensus 91 ~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~~~~~~~~~~-~~~~~~~~~-~~~~~-----~~~~~~p~~~~~a~~~~~a~ 163 (418)
T PTZ00144 91 RAPASGVITKIFAEEGDTVEVGAPLSEIDTGGAPPAAAP-AAAAAAKAE-KTTPE-----KPKAAAPTPEPPAASKPTPP 163 (418)
T ss_pred ecCCCeEEEEEEeCCCCEecCCCEEEEEcCCCccccccc-cccCCCCCc-cCCCC-----CCCCCCCccccccccccCCc
Confidence 345566777889999999999999999985543211100 000000000 00000 000011222 4455556554
Q ss_pred cccCCC---CCCCCccc--c-CCCCceEEeccHHHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCC
Q psy14345 86 ATVKLP---PADPTKEI--S-GTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGL 159 (431)
Q Consensus 86 ~~v~gt---g~dv~~~~--a-~~~~~~~vpls~~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~ 159 (431)
..+... +.....+. . .....+.+|+++|||+||++|++|++++||||++.|||+|+|+++|+++++.+.+++|.
T Consensus 164 p~vr~~~~~~~~~~~~~~~~~~~~~~~~ipls~~Rk~IA~~M~~S~~~iPh~t~~~eid~t~l~~~r~~~~~~~~~~~g~ 243 (418)
T PTZ00144 164 AAAKPPEPAPAAKPPPTPVARADPRETRVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSALMELRKEYKDDFQKKHGV 243 (418)
T ss_pred hhhhccccCCCCCCCCCCccccCCCceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEechHHHHHHHHHHhhhhhhcCC
Confidence 444321 10000000 0 01124568999999999999999999999999999999999999999999877777789
Q ss_pred CCChhHHHHHHHHHHHhhCCccceeeeCCeeEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhH
Q psy14345 160 KLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPS 239 (431)
Q Consensus 160 k~t~~~~~ikA~a~Al~~~P~~N~~~~~~~i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~ 239 (431)
|+||++||+||++.||++||.+|++|++++|++++++||||||++ + +||+||||+++|+++ + .+
T Consensus 244 klS~~~~liKAva~AL~~~P~~Na~~~~~~i~~~~~vnIgvAV~~-----~----~GL~vPVI~~ad~~s--l-----~e 307 (418)
T PTZ00144 244 KLGFMSAFVKASTIALKKMPIVNAYIDGDEIVYRNYVDISVAVAT-----P----TGLVVPVIRNCENKS--F-----AE 307 (418)
T ss_pred cccHHHHHHHHHHHHHHhChHhheEEcCCEEEEecCCCEEEEEEC-----C----CCEEEccCCCcccCC--H-----HH
Confidence 999999999999999999999999999989999999999999999 8 999999999999999 9 99
Q ss_pred HHHHHHHHHhhhhhcCCCCcccCCCceEEEecCCCCCccceeeccCCCcceeeeccceeEEEeeeCCeEEEeeeeeeeee
Q psy14345 240 YERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALT 319 (431)
Q Consensus 240 i~~~~~~l~~~ar~~g~L~~~~~~ggTftiSn~G~~G~~~~~pii~ppq~ail~vG~i~~~pv~~~g~~~~~~~m~lslt 319 (431)
|++++++|+++|| +|+|+++||+||||||||+|+||+++|+|||||||+||||+|++.++|++.+|+++++++|+++++
T Consensus 308 Ia~ei~~L~~~ar-~g~L~~~e~~GgTfTISNlG~~G~~~~tpIInpPq~aILgvG~i~~~pvv~~g~i~~r~~m~lsLs 386 (418)
T PTZ00144 308 IEKELADLAEKAR-NNKLTLEDMTGGTFTISNGGVFGSLMGTPIINPPQSAILGMHAIKKRPVVVGNEIVIRPIMYLALT 386 (418)
T ss_pred HHHHHHHHHHHHH-cCCCCHHHhCCceEEEECCCCCCcceeeeeecCCceEEEecccceeEeEEECCEEEEEeEEEEEEe
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeehHHHHHHHHHHHhHhhhh
Q psy14345 320 YDHRLIDGREAVLFLQKEAHLEAFQ 344 (431)
Q Consensus 320 ~DHRvIDg~~a~~fl~~lk~l~~~~ 344 (431)
||||+|||+.+++||+.++++.+.+
T Consensus 387 ~DHRviDGa~AA~FL~~lk~~LE~P 411 (418)
T PTZ00144 387 YDHRLIDGRDAVTFLKKIKDLIEDP 411 (418)
T ss_pred cchhhhChHHHHHHHHHHHHHhcCH
Confidence 9999999999999999999877654
No 9
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=100.00 E-value=4.8e-64 Score=516.34 Aligned_cols=223 Identities=54% Similarity=0.893 Sum_probs=216.7
Q ss_pred ceEEeccHHHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCcccee
Q psy14345 105 EQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAV 184 (431)
Q Consensus 105 ~~~vpls~~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~ 184 (431)
.+.+|+++|||.||++|++||+++||||++.|||+|+|+++|+++++.+.+++|.|+||++||+||+++||++||.+|++
T Consensus 234 ~~~ipls~~Rk~IA~~M~~S~~tiPh~t~~~evDvt~L~~lR~~l~~~~~~~~g~klS~~~~liKAva~AL~~~P~lNa~ 313 (463)
T PLN02226 234 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAV 313 (463)
T ss_pred ceeeeChHHHHHHHHHHHHHHhcCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhCCHhheE
Confidence 45789999999999999999999999999999999999999999998777777899999999999999999999999999
Q ss_pred eeCCeeEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCCC
Q psy14345 185 IEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDG 264 (431)
Q Consensus 185 ~~~~~i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~g 264 (431)
|+++.|+++++|||||||++ + +||+||||+|+|+++ + .||++++++|+++|| +|+|+++||+|
T Consensus 314 ~~~~~i~~~~~vnIGvAV~t-----~----~GLvVPVIr~ad~~s--l-----~eIa~ei~~L~~kAR-~gkL~~~dl~G 376 (463)
T PLN02226 314 IDGDDIIYRDYVDISIAVGT-----S----KGLVVPVIRGADKMN--F-----AEIEKTINGLAKKAN-EGTISIDEMAG 376 (463)
T ss_pred EcCCEEEEeCcccEEEEEEC-----C----CCEEeccCCCcccCC--H-----HHHHHHHHHHHHHHH-cCCCCHHHhCC
Confidence 99999999999999999999 8 999999999999999 9 999999999999999 99999999999
Q ss_pred ceEEEecCCCCCccceeeccCCCcceeeeccceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhh
Q psy14345 265 GTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQ 344 (431)
Q Consensus 265 gTftiSn~G~~G~~~~~pii~ppq~ail~vG~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~ 344 (431)
|||||||+|+||+++|+|||||||+||||+|++.++|++.+|+++++++|+++++||||+|||+.+++|++.++++.+.+
T Consensus 377 GTfTISNlG~~Gv~~ftPIInpPqvAILgvG~i~~~pvv~~g~i~~r~~m~lsLs~DHRVIDGa~aA~FL~~lk~~LE~P 456 (463)
T PLN02226 377 GSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVVGGSVVPRPMMYVALTYDHRLIDGREAVYFLRRVKDVVEDP 456 (463)
T ss_pred CeEEEECCCcccccceeccccCCcEEEEEcccceEEEEEECCEEEEEeEEEEeEecchhhhCcHHHHHHHHHHHHHhcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999877765
No 10
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=100.00 E-value=2e-64 Score=535.83 Aligned_cols=320 Identities=24% Similarity=0.335 Sum_probs=264.3
Q ss_pred cccccceeeeeecCCCCeEecCceeEEEecCCCCCCC--C--CCC-----CCC-CCCC--CCCCCC--CCC---C-C--C
Q psy14345 7 KQNNKKFLLLASLEDGATVKAGQQLFKIKPTATSVVD--W--WSS-----PEE-GSSA--QSRGYS--SSS---S-S--S 66 (431)
Q Consensus 7 ~~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~~~~~a~--~--~~~-----~~~-~~~~--~~~~~~--~~~---~-~--~ 66 (431)
.+...-.|..+.+++||.|++|++|+.|+.++++++. . .++ ++. +..+ .+.... .+. . . .
T Consensus 162 ~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (546)
T TIGR01348 162 PAPASGVVKSVKVKVGDSVPTGDLILTLSVAGSTPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQNP 241 (546)
T ss_pred cCCCCcEEEEEecCCCCEecCCCEEEEEecCCCCcccccCcccccccCCCCccccccccCCCCCCCccCccccccccccc
Confidence 3445567788899999999999999999854432110 0 000 000 0000 000000 000 0 0 1
Q ss_pred CCC-CCCCCC-chhhhcCCCccccCCCCC-------CCCcc--------c------c-C-C-------------CCceEE
Q psy14345 67 LCC-CSSPSP-SLCYSSAIEAATVKLPPA-------DPTKE--------I------S-G-T-------------RSEQRV 108 (431)
Q Consensus 67 ~~~-~~sp~~-~lA~e~gIdl~~v~gtg~-------dv~~~--------~------a-~-~-------------~~~~~v 108 (431)
.+. +++|.+ +||+|+||||+.++|||. |+... . + + . ..++++
T Consensus 242 ~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 321 (546)
T TIGR01348 242 AKVDHAAPAVRRLAREFGVDLSAVKGTGIKGRILREDVQRFVKEPSVRAQAAAASAAGGAPGALPWPNVDFSKFGEVEEV 321 (546)
T ss_pred ccccCCCHHHHHHHHHcCCCHhhCCCCCCCCeEeHHHHHHHhhccccccCcccccccCCccccCCCccccccccCcceee
Confidence 112 366776 999999999999999992 33110 0 0 0 0 013568
Q ss_pred eccHHHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceeeeC-
Q psy14345 109 KMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEG- 187 (431)
Q Consensus 109 pls~~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~~- 187 (431)
||++|||.||++|++|++++||||++.++|+|+|+++|+++|+.+.+ .|.|+||++||+||++.||++||.+|++|++
T Consensus 322 ~~s~~rk~ia~~m~~S~~~iPh~~~~~evdvt~l~~~r~~l~~~~~~-~g~kls~~~~l~kA~~~AL~~~P~~Na~~~~~ 400 (546)
T TIGR01348 322 DMSRIRKISGANLTRNWTMIPHVTHFDKADITEMEAFRKQQNAAVEK-EGVKLTVLHILMKAVAAALKKFPKFNASLDLG 400 (546)
T ss_pred ecchHHHHHHHHHHHHhhcCCEEEEEEEEEcHHHHHHHHHHHhhhhh-cCCcccHHHHHHHHHHHHHHhCChhhEEEeCC
Confidence 99999999999999999999999999999999999999999976555 4889999999999999999999999999984
Q ss_pred -CeeEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCCCce
Q psy14345 188 -TDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGT 266 (431)
Q Consensus 188 -~~i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~ggT 266 (431)
+.|+++++|||||||++ + +||++|||+++|+|| + .+|++++++|+++|| +|+|+++||+|||
T Consensus 401 ~~~i~~~~~vnigvAv~~-----~----~GL~vPvi~~a~~~s--l-----~~ia~~~~~l~~~ar-~g~L~~~d~~ggT 463 (546)
T TIGR01348 401 GEQLILKKYVNIGVAVDT-----P----NGLLVPVIKDVDRKG--I-----TELALELSDLAKKAR-DGKLTPDEMQGAC 463 (546)
T ss_pred CCEEEEeCCcCEEEEEEC-----C----CCeEECCcCCcccCC--H-----HHHHHHHHHHHHHHh-cCCCCHHHhCCCe
Confidence 57999999999999999 8 999999999999999 9 999999999999999 9999999999999
Q ss_pred EEEecCCCCCccceeeccCCCcceeeeccceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhh
Q psy14345 267 FTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQ 344 (431)
Q Consensus 267 ftiSn~G~~G~~~~~pii~ppq~ail~vG~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~ 344 (431)
|||||+||||+++|+|||||||+||||+|+++++|++.+|+++++++|+++++||||+|||..+++||+.++++.+++
T Consensus 464 fTiSNlG~~G~~~~~piin~Pq~aIl~vg~~~~~p~~~~~~~~~~~~m~ltls~DHRviDGa~aa~Fl~~~~~~le~P 541 (546)
T TIGR01348 464 FTISSLGGIGGTAFTPIVNAPEVAILGVSKSGMEPVWNGKEFEPRLMLPLSLSYDHRVIDGADAARFTTYICESLADI 541 (546)
T ss_pred EEEeCCCCCCCcceECCCCCCceEEEEcccceEEeEEECCEEEEEEEEEEeEeccchhcChHHHHHHHHHHHHHHhCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999877654
No 11
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=100.00 E-value=6e-65 Score=511.36 Aligned_cols=258 Identities=29% Similarity=0.412 Sum_probs=236.7
Q ss_pred CCCCCC-chhhhcCCCccccCCCCC-------CCCcc----------c--cC-------------CCCceEEeccHHHHH
Q psy14345 70 CSSPSP-SLCYSSAIEAATVKLPPA-------DPTKE----------I--SG-------------TRSEQRVKMNRMRQR 116 (431)
Q Consensus 70 ~~sp~~-~lA~e~gIdl~~v~gtg~-------dv~~~----------~--a~-------------~~~~~~vpls~~Rk~ 116 (431)
.++|.+ +||+|+||||+.++|||. |+... . +. .+..+.+|+++|||.
T Consensus 50 ~asP~aR~lA~e~gidl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~r~~ 129 (347)
T PRK14843 50 RISPLAKRIALEHNIAWQEIQGTGHRGKIMKKDVLALLPENIENDSIKSPAQIEKVEEVPDNVTPYGEIERIPMTPMRKV 129 (347)
T ss_pred cCCchhhHHHHHcCCCHhhCCCCCCCCcccHHHHHHHHhccccCccccCCCCCccccCCCcccccCCcceeeeCcHHHHH
Confidence 467777 999999999999999992 22110 0 00 011356899999999
Q ss_pred HHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceeeeC--CeeEecC
Q psy14345 117 IAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEG--TDIVYRD 194 (431)
Q Consensus 117 ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~~--~~i~~~~ 194 (431)
||++|++||+++||||++.|||+++|+++|+++++.+.++.|.|+||++||+||++.||++||.+|++|++ +.|++++
T Consensus 130 ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~~~i~~~~ 209 (347)
T PRK14843 130 IAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINASLTEDGKTIITHN 209 (347)
T ss_pred HHHHHHHHHhhCCeEEEEEEEEchHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcceeEEEecCCCeEEEec
Confidence 99999999999999999999999999999999997766666889999999999999999999999999984 5799999
Q ss_pred cccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCCCceEEEecCCC
Q psy14345 195 YVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGV 274 (431)
Q Consensus 195 ~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~ggTftiSn~G~ 274 (431)
+|||||||++ + +||+||||+|+|+|+ + .+|++++++|+++|| +|+|+++||+||||||||+||
T Consensus 210 ~vnigvAV~~-----~----~GL~vPVIr~a~~~s--l-----~eIa~~i~~l~~~Ar-~~kL~~~d~~GgTfTISNlG~ 272 (347)
T PRK14843 210 YVNLAMAVGM-----D----NGLMTPVVYNAEKMS--L-----SELVVAFKDVIGRTL-DGKLAPSELQNSTFTISNLGM 272 (347)
T ss_pred ccceEEEEec-----C----CCeEeCcCCCcccCC--H-----HHHHHHHHHHHHHHH-cCCCCHHHhCCCeEEEeCCCC
Confidence 9999999999 8 999999999999999 9 999999999999999 999999999999999999999
Q ss_pred CCccceeeccCCCcceeeeccceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhh
Q psy14345 275 FGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQ 344 (431)
Q Consensus 275 ~G~~~~~pii~ppq~ail~vG~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~ 344 (431)
||+++|+|||||||+||||+|++.++|++.+|+++++++|+++++||||+|||+.+++||+.++++.+.+
T Consensus 273 ~G~~~~tpIInpPq~aIlgvG~i~~~pv~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p 342 (347)
T PRK14843 273 FGVQSFGPIINQPNSAILGVSSTIEKPVVVNGEIVIRPIMSLGLTIDHRVVDGMAGAKFMKDLKELIETP 342 (347)
T ss_pred CcccceeccccCCceEEEecCCcceeeEEECCeEEEEeEEEEEEecchhhhCcHHHHHHHHHHHHHhcCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999876654
No 12
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=2.5e-64 Score=498.95 Aligned_cols=259 Identities=27% Similarity=0.418 Sum_probs=237.2
Q ss_pred CCCCCC-chhhhcCCCccccCCCC-------CCCCccc-------c--------C---------------CCCceEEecc
Q psy14345 70 CSSPSP-SLCYSSAIEAATVKLPP-------ADPTKEI-------S--------G---------------TRSEQRVKMN 111 (431)
Q Consensus 70 ~~sp~~-~lA~e~gIdl~~v~gtg-------~dv~~~~-------a--------~---------------~~~~~~vpls 111 (431)
+++|.+ +||+|+|||++.++||| +|+.... + . ...++.+|++
T Consensus 3 ~asP~aR~lA~e~gvdl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 82 (306)
T PRK11857 3 LATPIARALAKKLGIDISLLKGSGRDGKILAEDVENFIKSLKSAPTPAEAASVSSAQQAAKTAAPAAAPPKLEGKREKVA 82 (306)
T ss_pred CCCchhHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHhhccccccCCccccccccccccccccCCcccccCCCceeccCc
Confidence 356776 99999999999999999 2331100 0 0 0013467999
Q ss_pred HHHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceeeeC--Ce
Q psy14345 112 RMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEG--TD 189 (431)
Q Consensus 112 ~~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~~--~~ 189 (431)
+||+.||++|++|++++||+|++.|||+++|+++|+++++.+.+++|.|+||++||+||++.||++||.+|++|++ +.
T Consensus 83 ~~R~~ia~~M~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~g~kls~~~~likA~a~AL~~~P~~Na~~~~~~~~ 162 (306)
T PRK11857 83 PIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAKYDEATSE 162 (306)
T ss_pred HHHHHHHHHHHHhhccCCeEEEEEEEEchHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEEEeCCCCE
Confidence 9999999999999999999999999999999999999998777777899999999999999999999999999984 48
Q ss_pred eEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCCCceEEE
Q psy14345 190 IVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTI 269 (431)
Q Consensus 190 i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~ggTfti 269 (431)
|+++++|||||||++ + +||++|||+|+|++| + .||++++++|+++|| +|+|+++||+||||||
T Consensus 163 i~~~~~vnigvAv~~-----~----~GL~vPVI~~a~~~s--l-----~eIa~~i~~l~~~Ar-~~kL~~~dl~ggTfTI 225 (306)
T PRK11857 163 LVYPDTLNLGIAVDT-----E----AGLMVPVIKNAQKLS--I-----VEIAKEISRLAKAAR-ERKIKPDEMKGGSFTI 225 (306)
T ss_pred EEEcCCccEEEEEEC-----C----CCEEeCCcCCcCcCC--H-----HHHHHHHHHHHHHHH-cCCCChhhcCCccEEE
Confidence 999999999999999 8 999999999999999 9 999999999999999 9999999999999999
Q ss_pred ecCCCCCccceeeccCCCcceeeeccceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhhh
Q psy14345 270 SNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQK 345 (431)
Q Consensus 270 Sn~G~~G~~~~~pii~ppq~ail~vG~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~~ 345 (431)
||+|+||+.+|+|||||||+||||+|+++++|++.+|+++++++|+++++||||+|||+.+++|++.++++.+.+.
T Consensus 226 SNlG~~G~~~~tpiIn~pq~aILgvG~i~~~pvv~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~p~ 301 (306)
T PRK11857 226 TNYGSVGSLYGVPVINYPELAIAGVGAIIDKAIVKNGQIVAGKVMHLTVAADHRWIDGATIGRFASRVKELLEKPE 301 (306)
T ss_pred eCCCCCCccceecccCCCccceeecccceEEeEEECCEEEEeeeeEEeEecchhhhCcHHHHHHHHHHHHHhcCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998776543
No 13
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=3.9e-62 Score=500.73 Aligned_cols=319 Identities=37% Similarity=0.554 Sum_probs=272.4
Q ss_pred ccccceeeeeecCCCCeEecCceeEEEecCCCC-CCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-chhhhcCCC
Q psy14345 8 QNNKKFLLLASLEDGATVKAGQQLFKIKPTATS-VVDWWS-SPEEGSSAQSRGYSSSSSSSLCCCSSPSP-SLCYSSAIE 84 (431)
Q Consensus 8 ~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~~~~-~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~lA~e~gId 84 (431)
+.++-.|..+.+++||+|+||++|++|+.++++ ++.+.+ +++....++...............++|++ +||+|+|||
T Consensus 50 ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~e~gid 129 (404)
T COG0508 50 APDAGVLAKILVEEGDTVPVGAVIARIEEEGADAPAAAEAPPEPAAAAPASAPATAASAAAGRVLASPAVRRLAREAGID 129 (404)
T ss_pred CCCCeEEEEEeccCCCEEcCCCeEEEEecCCCcccccCcccCCccccCcCcccCccccccccccccCcchhhhhhhcCCC
Confidence 456667888999999999999999999987664 221111 01111111111111111111334567777 999999999
Q ss_pred ccccCCCC-------CCCCccc------------------cCCCCceEEeccHHHHHHHHHHHHhcccceEEEEeeeccc
Q psy14345 85 AATVKLPP-------ADPTKEI------------------SGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDM 139 (431)
Q Consensus 85 l~~v~gtg-------~dv~~~~------------------a~~~~~~~vpls~~Rk~ia~~m~~S~~~iP~~t~~~evD~ 139 (431)
++.+.||| .|+.... .....++++|++++||.|+++|.+|++++||+|.+.++|+
T Consensus 130 l~~v~gtG~~gri~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~ia~~m~~s~~~~p~~t~~~evd~ 209 (404)
T COG0508 130 LSKVKGTGPGGRITKKDVEAAVAEKAAAAAAPAPAAAAPASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDM 209 (404)
T ss_pred HHHcCCcCCCCceeccchhhhcccccccccccccccCCcccccCCceeeecccHHHHHHHHHHHHHhhCCeEEEEeeecH
Confidence 99999998 3442210 1234677899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceeeeCC--eeEecCcccEEEEEeecCCCCCCccCCcE
Q psy14345 140 SAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGT--DIVYRDYVDISVGMGRNESNLPRWCFNGL 217 (431)
Q Consensus 140 t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~~~--~i~~~~~v~igvav~~~~~~~~~~~~~gL 217 (431)
+.|+++|+++++.+.++ |.|+||++||+||++.||++||.+|++|+++ .+++++++|||+||++ + +||
T Consensus 210 t~l~~lr~~~~~~~~~~-g~klt~~~f~~kA~~~Alk~~P~~Na~~~~~~~~iv~~~~~~igiAv~t-----~----~GL 279 (404)
T COG0508 210 TKLMALRKKLKEEFEKK-GVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDT-----P----RGL 279 (404)
T ss_pred HHHHHHHHHhhhhhccc-CccccHHHHHHHHHHHHHHhCCccceeeccccceEEEeccccEEEEEec-----C----CCe
Confidence 99999999999887766 9999999999999999999999999888865 8999999999999999 8 999
Q ss_pred EEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCCCceEEEecCCCCCccceeeccCCCcceeeeccce
Q psy14345 218 LSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGT 297 (431)
Q Consensus 218 ~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~ggTftiSn~G~~G~~~~~pii~ppq~ail~vG~i 297 (431)
++|||+|+++++ + .+|++++.+|..+|| +|+|+++||+||||||||+|+||...|+|||||||+||||+|++
T Consensus 280 vvpVir~a~~~~--~-----~~i~~~i~~la~~aR-~~kl~~~e~~ggtftisn~G~~g~~~~tpiin~Pq~aILgv~~~ 351 (404)
T COG0508 280 VVPVIRDADKKS--L-----AEIAKEIKDLAKKAR-DGKLTPEEMQGGTFTISNLGMFGSLMFTPIINPPQVAILGVGAI 351 (404)
T ss_pred EecceeecccCC--H-----HHHHHHHHHHHHHHH-hcCcCHHHhCCceEEeecCCccccceecccccChhHheeecccc
Confidence 999999999999 9 999999999999999 99999999999999999999999999999999999999999999
Q ss_pred eEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhh
Q psy14345 298 FERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQ 344 (431)
Q Consensus 298 ~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~ 344 (431)
.+||++.++++.++++|+++++||||+|||..+.+|+..++++.+.+
T Consensus 352 ~~rpv~~~~~i~~~~mm~lsls~DHRviDGa~aa~Fl~~ik~~le~p 398 (404)
T COG0508 352 EERPVVVGGEIVVRPMMYLSLSYDHRVIDGAEAARFLVALKELLEDP 398 (404)
T ss_pred ccCceEecCceeeEeeEeecccccccccccHHHHHHHHHHHHHhcCh
Confidence 99999999999999999999999999999999999999999876654
No 14
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=100.00 E-value=3.6e-60 Score=511.77 Aligned_cols=321 Identities=22% Similarity=0.313 Sum_probs=264.2
Q ss_pred cccccceeeeeecCCCCeEecCceeEEEecCCCCCCCCC-----CCCCCC--CCCCCCCCCCC---C-----CCCCCCCC
Q psy14345 7 KQNNKKFLLLASLEDGATVKAGQQLFKIKPTATSVVDWW-----SSPEEG--SSAQSRGYSSS---S-----SSSLCCCS 71 (431)
Q Consensus 7 ~~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~~~~~a~~~-----~~~~~~--~~~~~~~~~~~---~-----~~~~~~~~ 71 (431)
....+-.|..+++++||+|++|++|+.|+.++++++... +++++. ..+.+.+..++ . ......++
T Consensus 251 ~ap~~G~l~~i~~~~G~~v~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 330 (633)
T PRK11854 251 PAPFAGTVKEIKVNVGDKVKTGSLIMRFEVEGAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFAENDAYVHA 330 (633)
T ss_pred eCCCCeEEEEEecCCCCEecCCCEEEEEecCCCCccccccccCCCCCCccccccCCCCCCCcccccccccccccCCccCC
Confidence 445566788899999999999999999986543211100 001000 00001000000 0 00112346
Q ss_pred CCCC-chhhhcCCCccccCCCCC-------CCCcc-----------cc---CC-----------------CCceEEeccH
Q psy14345 72 SPSP-SLCYSSAIEAATVKLPPA-------DPTKE-----------IS---GT-----------------RSEQRVKMNR 112 (431)
Q Consensus 72 sp~~-~lA~e~gIdl~~v~gtg~-------dv~~~-----------~a---~~-----------------~~~~~vpls~ 112 (431)
+|.+ +||+|+||||+.++|||. |+... .+ .. +.++++||++
T Consensus 331 sP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 410 (633)
T PRK11854 331 TPLVRRLAREFGVNLAKVKGTGRKGRILKEDVQAYVKDAVKRAEAAPAAAAAGGGGPGLLPWPKVDFSKFGEIEEVELGR 410 (633)
T ss_pred CchhHHHHHHhCCChhhcCCCCCCCeEeHHHHHHHhhccccccccCCcccccccccccccccccccccccCcceEEeCch
Confidence 7777 999999999999999992 22110 00 00 0134689999
Q ss_pred HHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHH-HhhcCCCCChhHHHHHHHHHHHhhCCccceeee--CCe
Q psy14345 113 MRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAF-QKKYGLKLGFMSPFIKASAYALQDQPVVNAVIE--GTD 189 (431)
Q Consensus 113 ~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~-~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~--~~~ 189 (431)
|||.||++|++||+++||||++.++|+|+|+++|+++++.. .++.|.|+||++||+||+++||++||+||++|+ +++
T Consensus 411 ~r~~ia~~m~~S~~~ip~~~~~~evD~t~l~~~rk~~~~~~~~~~~g~k~t~~~~likAva~Al~~~P~~Na~~~~~~~~ 490 (633)
T PRK11854 411 IQKISGANLHRNWVMIPHVTQFDKADITELEAFRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQR 490 (633)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeEEEcHHHHHHHHHHhhhhhhhcccCcccHHHHHHHHHHHHHHhCCHhhEEEecCCCE
Confidence 99999999999999999999999999999999999988543 334588999999999999999999999999996 468
Q ss_pred eEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCCCceEEE
Q psy14345 190 IVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTI 269 (431)
Q Consensus 190 i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~ggTfti 269 (431)
+++++++||||||++ + +||++|||+++++++ + .+|+++++++++++| +|+|+++|++||||||
T Consensus 491 i~~~~~vnigiAV~~-----~----~GL~vPvi~~a~~~s--l-----~~i~~~~~~l~~~ar-~~~l~~~~~~ggTftI 553 (633)
T PRK11854 491 LTLKKYVNIGIAVDT-----P----NGLVVPVFKDVNKKG--I-----IELSRELMDISKKAR-DGKLTAGDMQGGCFTI 553 (633)
T ss_pred EEEecccCEEEEEEC-----C----CceEEeeECCCccCC--H-----HHHHHHHHHHHHHHH-cCCCChHHcCCcEEEE
Confidence 999999999999999 8 999999999999999 9 999999999999999 9999999999999999
Q ss_pred ecCCCCCccceeeccCCCcceeeeccceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhh
Q psy14345 270 SNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQ 344 (431)
Q Consensus 270 Sn~G~~G~~~~~pii~ppq~ail~vG~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~ 344 (431)
||+||||+++|+|||||||+||||+|++.++|++.+|+++.+++|+++++||||+|||..+++||+.++++.+.+
T Consensus 554 SnlG~~G~~~~tpii~ppq~aIlgvG~i~~~p~~~~~~~~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~p 628 (633)
T PRK11854 554 SSIGGLGTTHFTPIVNAPEVAILGVSKSAMEPVWNGKEFAPRLMLPLSLSYDHRVIDGADGARFITIINDRLSDI 628 (633)
T ss_pred eCCcccCCcceeccccCCceEEEEcccceEEEEEECCEEEEEEEEEEeEEccchhcchHHHHHHHHHHHHHHhCH
Confidence 999999999999999999999999999999999988999999999999999999999999999999999876654
No 15
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2.3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....
Probab=100.00 E-value=1.9e-60 Score=455.44 Aligned_cols=224 Identities=39% Similarity=0.563 Sum_probs=199.7
Q ss_pred CCceEEeccHHHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccc
Q psy14345 103 RSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVN 182 (431)
Q Consensus 103 ~~~~~vpls~~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N 182 (431)
++++++|++++||+||++|++|++++||+|++.+||+|+|+++|+++++...+. +.|+|+++|++||++.||++||.+|
T Consensus 2 ~~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~~~-~~kis~~~~likAva~AL~~~P~lN 80 (231)
T PF00198_consen 2 GEETRVPLSGMRKAIAKRMTESLQTIPHFTLSREVDVTALLALRKELKEAGEEP-GGKISITDFLIKAVALALKEHPELN 80 (231)
T ss_dssp SSCEEEES-HHHHHHHHHHHHHHHHS-EEEEEEEEETHHHHHHHHHHHHHHHHT-TST-THHHHHHHHHHHHHHHSGGGS
T ss_pred CCcEEEECcHHHHHHHHHHHHHHhcCCeEEEEEEEEHHHHHHHHHHhhhHHHhh-ccCCChhHeeeehHhhhhHHHHHhc
Confidence 467899999999999999999999999999999999999999999999876554 4599999999999999999999999
Q ss_pred eeeeCCe-eEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCccc
Q psy14345 183 AVIEGTD-IVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIED 261 (431)
Q Consensus 183 ~~~~~~~-i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~ 261 (431)
++|+++. |++++++||||||++ + +||++|||+|++++| + .||++++++++++|| +|+|+++|
T Consensus 81 a~~~~~~~i~~~~~vnIgvAV~~-----~----~GL~vPVIr~a~~~s--l-----~eIa~e~~~l~~~ar-~g~l~~~d 143 (231)
T PF00198_consen 81 ASWDGDGEIVLYERVNIGVAVDT-----P----DGLVVPVIRDADKKS--L-----AEIAKELRDLAERAR-EGKLTPED 143 (231)
T ss_dssp EEEETTSEEEEESS--EEEEEEE-----T----TEEEEEEETTGGGS---H-----HHHHHHHHHHHHHHH-TT---GGG
T ss_pred cccccccceeeeeeEEEEEEEEc-----C----CCEEEEEEeCCcccc--H-----HHHHHHHhhhhccch-hhhhhhhh
Confidence 9999876 999999999999999 8 999999999999999 9 999999999999999 99999999
Q ss_pred CCCceEEEecCCCCCccceeeccCCCcceeeeccceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHh
Q psy14345 262 SDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLE 341 (431)
Q Consensus 262 ~~ggTftiSn~G~~G~~~~~pii~ppq~ail~vG~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~ 341 (431)
++||||||||+|+||++.|+|||||||+||||+|+++++|++.+|+++++++|+++++||||++||.++++|++.++++.
T Consensus 144 ~~g~TftisNlG~~g~~~~~pii~~pq~ail~vG~i~~~p~~~~~~~~~~~~~~lslt~DHRvidG~~aa~Fl~~l~~~l 223 (231)
T PF00198_consen 144 LQGGTFTISNLGMFGVESFTPIINPPQVAILGVGAIRDRPVVEDGEVVVRPVMNLSLTFDHRVIDGAEAARFLKDLKELL 223 (231)
T ss_dssp GSS-SEEEEEGGGTT-SCEE----TTSSEEEEEEEEEEEEEEETTCEEEEEEEEEEEEEETTTS-HHHHHHHHHHHHHHH
T ss_pred hhccceeeeecCCCCcceeEccCCcccceEEEecceEEEEEEEeccceeeEEEEeEEeccceEEcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred hhh
Q psy14345 342 AFQ 344 (431)
Q Consensus 342 ~~~ 344 (431)
+.+
T Consensus 224 e~p 226 (231)
T PF00198_consen 224 ENP 226 (231)
T ss_dssp HST
T ss_pred hCH
Confidence 654
No 16
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=3.5e-58 Score=489.68 Aligned_cols=321 Identities=26% Similarity=0.356 Sum_probs=263.5
Q ss_pred ccccccceeeeeecCCCCeEecCceeEEEecCCCCC--C--CCCCCC--CCCC--CCCCCC----CCCC-CCC--CCCC-
Q psy14345 6 LKQNNKKFLLLASLEDGATVKAGQQLFKIKPTATSV--V--DWWSSP--EEGS--SAQSRG----YSSS-SSS--SLCC- 69 (431)
Q Consensus 6 ~~~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~~~~~--a--~~~~~~--~~~~--~~~~~~----~~~~-~~~--~~~~- 69 (431)
+..-.+-++..+.+++||.|++|++|+.|+..++.+ + ++.+++ .... ...+.. ..+. ... +...
T Consensus 164 v~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (547)
T PRK11855 164 IPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAP 243 (547)
T ss_pred ecCCCCeEEEEEecCCCCEecCCCEEEEEecCCCccccccCCCCCCCccccccCCCCCCcccccCCccccccccccCCcc
Confidence 334455677888999999999999999998653211 0 000000 0000 000000 0000 000 1122
Q ss_pred CCCCCC-chhhhcCCCccccCCCCC-------CCCcc--------c-------cC----C-------------CCceEEe
Q psy14345 70 CSSPSP-SLCYSSAIEAATVKLPPA-------DPTKE--------I-------SG----T-------------RSEQRVK 109 (431)
Q Consensus 70 ~~sp~~-~lA~e~gIdl~~v~gtg~-------dv~~~--------~-------a~----~-------------~~~~~vp 109 (431)
.++|.+ +||+|+||||+.|+|||. |+... . +. . +.++++|
T Consensus 244 ~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (547)
T PRK11855 244 HASPAVRRLARELGVDLSQVKGTGKKGRITKEDVQAFVKGAMSAAAAAAAAAAAAGGGGLGLLPWPKVDFSKFGEIETKP 323 (547)
T ss_pred cCChHHHHHHHHhCCCHHHCcCCCCCCcEeHHHHHHHhhccccccccccccccccccccccccCCccccccccCcceEEe
Confidence 456776 999999999999999992 22110 0 00 0 0135689
Q ss_pred ccHHHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceeee--C
Q psy14345 110 MNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIE--G 187 (431)
Q Consensus 110 ls~~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~--~ 187 (431)
|+++||.||++|++|++++||||++.+||+|+|+++|+++++.+++. |.|+||++||+||+++||++||+||++|+ +
T Consensus 324 ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~~~~~~~~~-g~k~s~~~~likAv~~al~~~P~ln~~~~~~~ 402 (547)
T PRK11855 324 LSRIKKISAANLHRSWVTIPHVTQFDEADITDLEALRKQLKKEAEKA-GVKLTMLPFFIKAVVAALKEFPVFNASLDEDG 402 (547)
T ss_pred CcHHHHHHHHHHHHHhhcCCeEEEEEEEEChHHHHHHHHhhhhhhhc-CCCCCHHHHHHHHHHHHHHhCcHhhEEEccCC
Confidence 99999999999999999999999999999999999999998766554 89999999999999999999999999998 5
Q ss_pred CeeEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCCCceE
Q psy14345 188 TDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTF 267 (431)
Q Consensus 188 ~~i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~ggTf 267 (431)
+.+++++++|||+||++ + +||++|||+|+++++ + .+|+++++++++++| +|+|.++|++||||
T Consensus 403 ~~i~~~~~i~i~~Av~~-----~----~gl~vpvi~~~~~~s--l-----~~i~~~~~~l~~~ar-~~~l~~~~~~ggtf 465 (547)
T PRK11855 403 DELTYKKYFNIGFAVDT-----P----NGLVVPVIKDVDKKS--L-----LEIAREIAELAKKAR-DGKLKPDDMQGGCF 465 (547)
T ss_pred CEEEEeCCccEEEEEEC-----C----CccEeCCcCCCccCC--H-----HHHHHHHHHHHHHHH-cCCCChHhcCCceE
Confidence 68999999999999999 8 899999999999999 9 999999999999999 99999999999999
Q ss_pred EEecCCCCCccceeeccCCCcceeeeccceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhh
Q psy14345 268 TISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQ 344 (431)
Q Consensus 268 tiSn~G~~G~~~~~pii~ppq~ail~vG~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~ 344 (431)
||||+||||+++|+|+|||||+||||+|++.++|++.+|++..+++|+++++||||+|||..+++||+.++++.+++
T Consensus 466 tiSnlg~~g~~~~tpii~~pq~ail~~G~~~~~pv~~~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p 542 (547)
T PRK11855 466 TISSLGGIGGTAFTPIINAPEVAILGVGKSQMKPVWDGKEFVPRLMLPLSLSYDHRVIDGATAARFTNYLKQLLADP 542 (547)
T ss_pred EEeCCccccccceecCcCCCceEEEEcccceEeeeeeCCEEEEEeEEEEeEEccchhcCcHHHHHHHHHHHHHHhCH
Confidence 99999999999999999999999999999999998888899999999999999999999999999999999876654
No 17
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=100.00 E-value=9.6e-57 Score=464.23 Aligned_cols=312 Identities=30% Similarity=0.441 Sum_probs=258.1
Q ss_pred cceeeeeecCCCCeEecCceeEEEecCCC-CC--CCC--CCCCCCCCCC--CC--CCCCCCC--C-CCC--CCCCCCCC-
Q psy14345 11 KKFLLLASLEDGATVKAGQQLFKIKPTAT-SV--VDW--WSSPEEGSSA--QS--RGYSSSS--S-SSL--CCCSSPSP- 75 (431)
Q Consensus 11 ~~~~l~~~~~eGd~v~VG~~L~~Ie~~~~-~~--a~~--~~~~~~~~~~--~~--~~~~~~~--~-~~~--~~~~sp~~- 75 (431)
+-.+..+.+++|+.|++|++|++|+..++ +. +++ ..++...+.+ .+ .+.++.. . ... ...++|.+
T Consensus 53 ~G~i~~~~v~~G~~v~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r 132 (411)
T PRK11856 53 AGTVAKLLVEEGDVVPVGSVIAVIEEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASPAVR 132 (411)
T ss_pred CeEEEEEecCCCCEeCCCCEEEEEecCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCcccCcccccCCcccCChHHH
Confidence 34566779999999999999999986543 21 110 0001000000 00 0000000 0 000 11356666
Q ss_pred chhhhcCCCccccCCCCC-------CCCcccc-------------------CCCCceEEeccHHHHHHHHHHHHhcccce
Q psy14345 76 SLCYSSAIEAATVKLPPA-------DPTKEIS-------------------GTRSEQRVKMNRMRQRIAQRLKEAQNVNA 129 (431)
Q Consensus 76 ~lA~e~gIdl~~v~gtg~-------dv~~~~a-------------------~~~~~~~vpls~~Rk~ia~~m~~S~~~iP 129 (431)
+||+|+||||+.++|+|. |+.+... ....++.+|++++||.||++|++||.++|
T Consensus 133 ~la~~~gidl~~i~gsG~~Gri~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~m~~s~~~~P 212 (411)
T PRK11856 133 KLARELGVDLSTVKGSGPGGRITKEDVEAAAAAAAPAAAAAAAAAAAPPAAAAEGEERVPLSGMRKAIAKRMVESKREIP 212 (411)
T ss_pred HHHHHcCCCHHHCcCCCCCCeEEHHHHHHHHhcccccCCCCCCCCCCCCcccCCCceEeeCcHHHHHHHHHHHHHhhcCC
Confidence 999999999999999982 3321100 01125678999999999999999999999
Q ss_pred EEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceeeeCCeeEecCcccEEEEEeecCCCC
Q psy14345 130 MLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNL 209 (431)
Q Consensus 130 ~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~~~~i~~~~~v~igvav~~~~~~~ 209 (431)
||+++.+||+|+|+++|+++++. +.++||++||+||+++||++||+||++|+++.+++++++|||+||++
T Consensus 213 ~~~~~~~idvt~l~~~~k~~~~~-----~~~ls~~~~~ikav~~Al~~~P~~n~~~~~~~i~~~~~i~i~~av~~----- 282 (411)
T PRK11856 213 HFTLTDEVDVTALLALRKQLKAI-----GVKLTVTDFLIKAVALALKKFPELNASWDDDAIVLKKYVNIGIAVAT----- 282 (411)
T ss_pred eEEEEEEEEhHHHHHHHHHHHhh-----ccCccHHHHHHHHHHHHHHhCcHhheEEeCCEEEEcCCcCEEEEEEC-----
Confidence 99999999999999999998643 47899999999999999999999999999999999999999999999
Q ss_pred CCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCCCceEEEecCCCCCccceeeccCCCcc
Q psy14345 210 PRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQS 289 (431)
Q Consensus 210 ~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~ggTftiSn~G~~G~~~~~pii~ppq~ 289 (431)
+ +||++|||+++++++ | .+|+++++++++++| +|+|+++|++||||||||+||||...|+|+|||||+
T Consensus 283 ~----~gl~~pvi~~~~~~s--l-----~ei~~~~~~~~~~ar-~~~l~~~~~~~gtftiSn~G~~g~~~~~Pii~~p~~ 350 (411)
T PRK11856 283 D----GGLIVPVIRDADKKS--L-----FELAREIKDLAEKAR-EGKLKPEELQGGTFTISNLGMFGGDYFTPIINPPEV 350 (411)
T ss_pred C----CCeEeCcCCCcccCC--H-----HHHHHHHHHHHHHHH-cCCCCHHHhCCCeEEEeCCCccCCCceECccCCCce
Confidence 8 999999999999999 9 999999999999999 999999999999999999999999999999999999
Q ss_pred eeeeccceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhh
Q psy14345 290 AILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQ 344 (431)
Q Consensus 290 ail~vG~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~ 344 (431)
|||++|++.++|++.+|+++++++|+++++||||++||.++++|++.++++.+++
T Consensus 351 ail~iG~~~~~~~~~~g~~~~~~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p 405 (411)
T PRK11856 351 AILGVGAIVERPVVVDGEIVVRKVMPLSLSFDHRVIDGADAARFLKALKELLENP 405 (411)
T ss_pred EEEEcccceEEEEEECCEEEEEEEEEEeEEeehhhcCcHHHHHHHHHHHHHHhCH
Confidence 9999999999999999999999999999999999999999999999999876654
No 18
>KOG0558|consensus
Probab=100.00 E-value=6.3e-55 Score=420.98 Aligned_cols=309 Identities=25% Similarity=0.321 Sum_probs=262.3
Q ss_pred eeeeecCCCCeEecCceeEEEecCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCC-chhhhcCCCccccCCC
Q psy14345 14 LLLASLEDGATVKAGQQLFKIKPTATSVVDWWSSPEEGSSAQSRG-YSSSSSSSLCCCSSPSP-SLCYSSAIEAATVKLP 91 (431)
Q Consensus 14 ~l~~~~~eGd~v~VG~~L~~Ie~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sp~~-~lA~e~gIdl~~v~gt 91 (431)
+-++|.+.||..+||+||++++.++..--++. ..+++..+-+ ...........-++|++ +||+|++|||+.|.||
T Consensus 118 v~ki~h~~ddia~VGk~Lvd~eve~~~ds~e~---s~es~~vs~~~~~~~~~~~~~tlaTPaVRrlA~e~~idla~v~gt 194 (474)
T KOG0558|consen 118 VKKIYHSPDDIAKVGKPLVDLEVEDSQDSPED---SDESPAVSLGESKQGEESLLKTLATPAVRRLAKENGIDLAEVTGT 194 (474)
T ss_pred EEEEeeCchhhhHhCcceeeeeeccCcCCccc---CCccccccCCCCchhhhhccccccCHHHHHHHHHhCCceEeeecc
Confidence 44679999999999999999998765311111 1111111111 11111112334467887 9999999999999999
Q ss_pred CCCCCc------------------------------ccc-----CCCCceEEeccHHHHHHHHHHHHhcccceEEEEeee
Q psy14345 92 PADPTK------------------------------EIS-----GTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNE 136 (431)
Q Consensus 92 g~dv~~------------------------------~~a-----~~~~~~~vpls~~Rk~ia~~m~~S~~~iP~~t~~~e 136 (431)
|.|..- .++ .-..+..+|+.|.+|+|.+.|+++ ..||||.+..|
T Consensus 195 GKdGRvLKeDvL~fl~q~pg~~~~~~~~~~a~~~~~~ps~~a~~~~~~Dkt~plrGf~rAMvKtMt~a-lkiPHF~y~dE 273 (474)
T KOG0558|consen 195 GKDGRVLKEDVLRFLGQVPGFVTDPSPSEHAVIPGPSPSTKASSNLEADKTVPLRGFSRAMVKTMTEA-LKIPHFGYVDE 273 (474)
T ss_pred CCCCcchHHHHHHHhccCCCCccCCCCceeecCCCCCCcccccCcccccceeechhHHHHHHHHHHHH-hcCCccccccc
Confidence 944210 000 012356789999999999999999 58999999999
Q ss_pred ccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceeeeC--CeeEecCcccEEEEEeecCCCCCCccC
Q psy14345 137 IDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEG--TDIVYRDYVDISVGMGRNESNLPRWCF 214 (431)
Q Consensus 137 vD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~~--~~i~~~~~v~igvav~~~~~~~~~~~~ 214 (431)
||++.|+++|+++++...++ |.|+||++||+||+++||.+||.+|+++++ ..|++..++|||+|++| |
T Consensus 274 In~~sLvklr~elk~~a~e~-~IKltfmPf~iKaaSlaL~kyP~vNss~d~~~e~ii~K~sHNIgvAmdT-----~---- 343 (474)
T KOG0558|consen 274 INCDSLVKLRQELKENAKER-GIKLTFMPFFIKAASLALLKYPIVNSSFDEESENIILKGSHNIGVAMDT-----E---- 343 (474)
T ss_pred cChHHHHHHHHHHhhhhhhc-CceeeehHHHHHHHHHHHhhCccccchhhhhhhhhhhhcccceeEEecC-----C----
Confidence 99999999999999765444 899999999999999999999999999985 57999999999999999 9
Q ss_pred CcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCCCceEEEecCCCCCccceeeccCCCcceeeec
Q psy14345 215 NGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGM 294 (431)
Q Consensus 215 ~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~ggTftiSn~G~~G~~~~~pii~ppq~ail~v 294 (431)
.||+||.|+|++.+| + .||++++.+|.+.++ +|+|+++|+.|||||+||+|.+|.++..|+|+|||+||.++
T Consensus 344 ~GLvVPNiKN~q~~s--i-----~eIakeLnrLq~~g~-~~qls~~D~t~GTftLSNIG~IGGtf~~P~i~~PeVAIgAl 415 (474)
T KOG0558|consen 344 QGLVVPNIKNVQSLS--I-----FEIAKELNRLQELGA-NGQLSPEDLTGGTFTLSNIGAIGGTFASPVIMPPEVAIGAL 415 (474)
T ss_pred CceeccCccccchhh--H-----HHHHHHHHHHHHhhh-cCCcChhhccCceEEeeecccccccccCcccccchhhhhhc
Confidence 999999999999999 9 999999999999999 99999999999999999999999999999999999999999
Q ss_pred cceeEEEeee-CCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhh
Q psy14345 295 HGTFERPVAI-KGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQ 344 (431)
Q Consensus 295 G~i~~~pv~~-~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~ 344 (431)
|+|+.-|... .|++.....|.++++.|||+|||+..++|-..+|++.+++
T Consensus 416 Grie~vPrFnkk~~V~~a~IM~VswsADHRViDGaTmarFsn~WK~YlE~P 466 (474)
T KOG0558|consen 416 GRIEKVPRFNKKGEVYPASIMMVSWSADHRVIDGATMARFSNQWKEYLENP 466 (474)
T ss_pred cccccccccCCCCCEEEeEEEEEEeecCceeeccHHHHHHHHHHHHHhhCH
Confidence 9999999986 5799999999999999999999999999999999987765
No 19
>KOG0557|consensus
Probab=100.00 E-value=1.4e-54 Score=435.55 Aligned_cols=316 Identities=25% Similarity=0.305 Sum_probs=260.4
Q ss_pred cccceeeeeecCCC-CeEecCceeEEEecCCCCC------CC-------------CCCCCCCCCCCCCCCCCCC-----C
Q psy14345 9 NNKKFLLLASLEDG-ATVKAGQQLFKIKPTATSV------VD-------------WWSSPEEGSSAQSRGYSSS-----S 63 (431)
Q Consensus 9 ~~~~~~l~~~~~eG-d~v~VG~~L~~Ie~~~~~~------a~-------------~~~~~~~~~~~~~~~~~~~-----~ 63 (431)
-+.-||-+|-++|| ..|+||++||.|-+.+++. .+ ++++|..+..+++...+.. .
T Consensus 87 ~ddGyLAKILi~EGskdvpVGk~Iaiive~e~di~~~k~~k~~~s~~~~~~~~~~~~app~~~~~~~Ps~~~~~~~~~p~ 166 (470)
T KOG0557|consen 87 QDDGYLAKILIEEGSKDVPVGKPIAIIVEDEDDIAAFKLPKDEASSGEQSPSAAPPPAPPKVAKPEAPSAPSKPSTSQPV 166 (470)
T ss_pred ccCCeeeeeeeccCcccccCCCceEEEecccccHHHhhccccccccccCCcccCCCCCCCcccccCCCCCCccccccccC
Confidence 35568899999999 9999999999998443321 11 0111111111111111000 0
Q ss_pred CCCC--CCCCCCCC-chhhhcCCCccccCCCC-------CCCCc-----------c-------------ccCCCCceEEe
Q psy14345 64 SSSL--CCCSSPSP-SLCYSSAIEAATVKLPP-------ADPTK-----------E-------------ISGTRSEQRVK 109 (431)
Q Consensus 64 ~~~~--~~~~sp~~-~lA~e~gIdl~~v~gtg-------~dv~~-----------~-------------~a~~~~~~~vp 109 (431)
.+.. +..++|.. +||.|+|+|++.+.||| .|+.+ + ....+.++++|
T Consensus 167 ~~~~~~r~~asP~Ak~la~e~~l~ls~i~gtGP~Gri~k~Di~~~v~~~~~k~~~~~~~~~~~~~~~a~~~~~~~~~diP 246 (470)
T KOG0557|consen 167 KAKNGGRVFASPLAKKLAEEKGLELSSIPGTGPHGRILKGDIEKHVGSGKKKSAKAPKASAPPPAPAAPPVSLPGYEDIP 246 (470)
T ss_pred CcCCCCceecChHHHHHHHHhCCccccCcCcCCCceeehhhHHHhhcccccccccCCCccCCCcCccCCcCCCCcccccc
Confidence 0010 12233444 99999999999999998 22221 0 01223478999
Q ss_pred ccHHHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceeeeC-C
Q psy14345 110 MNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEG-T 188 (431)
Q Consensus 110 ls~~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~~-~ 188 (431)
++.||+.|++||.+|+++|||+|++.+++++.|+++|+.+| + .+.+.++|+++|++||.+.||+++|++|++|.+ .
T Consensus 247 ~s~mr~viakrl~eSk~~IPh~yvt~~~~~d~ll~~r~~ln--~-~~~~~~vsvndliiKAaa~al~~vPevNs~w~~~~ 323 (470)
T KOG0557|consen 247 VSNMRRVIAKRLLESKQTIPHYYVTVDVNLDKLLALREKLN--F-EKSIKKVSLNDLIAKAAALALAKVPEVNSSWMDEL 323 (470)
T ss_pred cchhhhhhhhhhhhhhcCCCeEEEeeeeehHHHHHHHHHhh--h-cccCcccchhHHHHHHHHHHHhcCCcccceecCCc
Confidence 99999999999999999999999999999999999999998 2 234789999999999999999999999999987 8
Q ss_pred eeEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCCCceEE
Q psy14345 189 DIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFT 268 (431)
Q Consensus 189 ~i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~ggTft 268 (431)
.|+++++|||++||++ + +||++|+|+|++.++ + .+|++.+++|+.+|| .|+|.|+|++|||||
T Consensus 324 ~i~~~~~VdisvAVat-----~----~GLitPii~na~~kg--l-----~~is~~vkel~~kAr-~~kL~Pee~qgGtft 386 (470)
T KOG0557|consen 324 VIRQLSSVDISVAVAT-----P----NGLITPIIQNADAKG--L-----STISSKVKELAQKAR-EGKLQPEEFQGGTFT 386 (470)
T ss_pred cccccCcCChhheeec-----c----Ccccchhhhhccccc--H-----HHHHHHHHHHHHHHh-hccCCcccccCCcee
Confidence 8999999999999999 8 999999999999999 9 999999999999999 999999999999999
Q ss_pred EecCCCCCccceeeccCCCcceeeeccceeEEEeee---CCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhh
Q psy14345 269 ISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAI---KGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQ 344 (431)
Q Consensus 269 iSn~G~~G~~~~~pii~ppq~ail~vG~i~~~pv~~---~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~ 344 (431)
|||+||||++.|+.||||||.|||++|..++..|.. +++.....+|++++++|||+|||+.+++||+.|+++.+++
T Consensus 387 iSNLGmf~V~~F~AiinPpq~~ILavg~~~~~~v~d~~~~~~~~~~~~m~VTls~DhRvvdga~aa~Fl~~fk~~~EnP 465 (470)
T KOG0557|consen 387 LSNLGMFGVDMFTAIINPPQADILAVGAATPSVVPDANGPEKFSVINAMTVTLSADHRVVDGAVAARFLDEFKENLENP 465 (470)
T ss_pred HhhccCcCccccccccCCchhhhhhcccCccccccCCCcccccceeeeeEEEEecCcceecHHHHHHHHHHHHHHhhCH
Confidence 999999999999999999999999999999887752 3578999999999999999999999999999999887765
No 20
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=3.4e-52 Score=445.77 Aligned_cols=226 Identities=18% Similarity=0.228 Sum_probs=212.6
Q ss_pred CceEEeccHHHHHHHHHHHHhcccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccce
Q psy14345 104 SEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNA 183 (431)
Q Consensus 104 ~~~~vpls~~Rk~ia~~m~~S~~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~ 183 (431)
..+.+|++|++++||++|..|+ ++|++|...+|+++.|+++|+.+|+.+.+.+|.|+||||+|+||+++||++||.||+
T Consensus 114 ~~~~~~LrG~a~aiAkNM~aSL-~vPtaTsvr~Ip~k~L~dnR~~In~~l~r~~GgKVSFThlI~kAvv~AL~~~P~mNa 192 (1228)
T PRK12270 114 EDEVTPLRGAAAAVAKNMDASL-EVPTATSVRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLIGYALVQALKAFPNMNR 192 (1228)
T ss_pred CcceeecccHHHHHHHHHHhhh-ccCceeeeecccHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHhCchhhc
Confidence 4578899999999999999996 699999999999999999999999999999999999999999999999999999999
Q ss_pred eee--CC--eeEecCcccEEEEEeecCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCc
Q psy14345 184 VIE--GT--DIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAI 259 (431)
Q Consensus 184 ~~~--~~--~i~~~~~v~igvav~~~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~ 259 (431)
+|+ ++ .|+++++||||+||+++. ++|.+||+||+|++||+|+ | .+|++++.++++||| +|+|++
T Consensus 193 sy~~~DGKp~iv~~~~VNlGiAVdl~~----~dGsRgLVVPvIK~Ad~l~--f-----~ef~~ay~dLV~KAR-~gKLt~ 260 (1228)
T PRK12270 193 HYAEVDGKPTLVTPAHVNLGLAIDLPK----KDGSRQLVVPAIKGAETMD--F-----AQFWAAYEDIVRRAR-DGKLTA 260 (1228)
T ss_pred eeeccCCCceeeccCCcceEEEEecCC----CCCCcceeeccccccccCC--H-----HHHHHHHHHHHHHHH-cCCCCH
Confidence 997 44 499999999999999942 2355899999999999999 9 999999999999999 999999
Q ss_pred ccCCCceEEEecCCCCCccceeeccCCCcceeeeccceeEEEeeeC------CeEEEeeeeeeeeeeeeeeeehHHHHHH
Q psy14345 260 EDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIK------GQVVVKPMMYVALTYDHRLIDGREAVLF 333 (431)
Q Consensus 260 ~~~~ggTftiSn~G~~G~~~~~pii~ppq~ail~vG~i~~~pv~~~------g~~~~~~~m~lslt~DHRvIDg~~a~~f 333 (431)
+||+||||||||+||||+.+|+|||||||+||||||++...|++.+ +++.++++|++++|||||+|||+++.+|
T Consensus 261 eD~~GgTFTISN~G~iGt~~ftPILnppQ~AILGVGAi~~p~~f~gas~~~l~~i~i~kvMtLTlTyDHRVIdGA~sg~F 340 (1228)
T PRK12270 261 DDFQGTTISLTNPGGIGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLAELGISKVMTLTSTYDHRIIQGAESGEF 340 (1228)
T ss_pred HHhCCceEEEecCCcccccceeeeecCCceEEEeccccccCceecCcccccccccceeeeEEeeeeccceeeccHhHHHH
Confidence 9999999999999999999999999999999999999998888743 5899999999999999999999999999
Q ss_pred HHHHHhHhh
Q psy14345 334 LQKEAHLEA 342 (431)
Q Consensus 334 l~~lk~l~~ 342 (431)
|+.++++.+
T Consensus 341 L~~ik~lLe 349 (1228)
T PRK12270 341 LRTIHQLLL 349 (1228)
T ss_pred HHHHHHHHh
Confidence 999998655
No 21
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2.3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....
Probab=99.89 E-value=7e-23 Score=196.28 Aligned_cols=106 Identities=38% Similarity=0.536 Sum_probs=90.4
Q ss_pred eeeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCCe-eEEcCCcceEEEEecCCCeeec
Q psy14345 323 RLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTD-IVYRDYVDISVAVATPKGLVVP 401 (431)
Q Consensus 323 RvIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~~-i~~~~~vnigvAV~~~~GL~vP 401 (431)
+.||.+.+.++++++++... ..+.|+|+++|++||++.||++||.+|++|+++. |++++++||||||++++||+||
T Consensus 34 ~evd~t~l~~~r~~l~~~~~---~~~~kis~~~~likAva~AL~~~P~lNa~~~~~~~i~~~~~vnIgvAV~~~~GL~vP 110 (231)
T PF00198_consen 34 REVDVTALLALRKELKEAGE---EPGGKISITDFLIKAVALALKEHPELNASWDGDGEIVLYERVNIGVAVDTPDGLVVP 110 (231)
T ss_dssp EEEETHHHHHHHHHHHHHHH---HTTST-THHHHHHHHHHHHHHHSGGGSEEEETTSEEEEESS--EEEEEEETTEEEEE
T ss_pred EEEEHHHHHHHHHHhhhHHH---hhccCCChhHeeeehHhhhhHHHHHhccccccccceeeeeeEEEEEEEEcCCCEEEE
Confidence 34788999999998875322 2345999999999999999999999999999887 9999999999999999999999
Q ss_pred eecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345 402 VIRNVEAMNFADIELTIAALGEKARTGKYT 431 (431)
Q Consensus 402 vi~~a~~~~l~~ia~~~~~l~~~ar~g~L~ 431 (431)
||||++++|+.||++++++|++|||+|+|+
T Consensus 111 VIr~a~~~sl~eIa~e~~~l~~~ar~g~l~ 140 (231)
T PF00198_consen 111 VIRDADKKSLAEIAKELRDLAERAREGKLT 140 (231)
T ss_dssp EETTGGGS-HHHHHHHHHHHHHHHHTT---
T ss_pred EEeCCccccHHHHHHHHhhhhccchhhhhh
Confidence 999999999999999999999999999985
No 22
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=99.89 E-value=7e-23 Score=206.65 Aligned_cols=105 Identities=23% Similarity=0.368 Sum_probs=95.8
Q ss_pred eehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeC--CeeEEcCCcceEEEEecCCCeeece
Q psy14345 325 IDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEG--TDIVYRDYVDISVAVATPKGLVVPV 402 (431)
Q Consensus 325 IDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~--~~i~~~~~vnigvAV~~~~GL~vPv 402 (431)
+|.+.+..+++++++. +.++.|.|+|+++||+||++.||++||.+|++|++ +.|+++++|||||||++++||+|||
T Consensus 150 vd~t~l~~~r~~~~~~--~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAV~~~~GL~vPV 227 (347)
T PRK14843 150 VDMTEMLALRKKVLEP--IMEATGKKTTVTDLLSLAVVKTLMKHPYINASLTEDGKTIITHNYVNLAMAVGMDNGLMTPV 227 (347)
T ss_pred EEchHHHHHHHHHHHH--HHhhcCCcccHHHHHHHHHHHHHHhCcceeEEEecCCCeEEEecccceEEEEecCCCeEeCc
Confidence 7888999999888742 22345789999999999999999999999999974 5699999999999999999999999
Q ss_pred ecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345 403 IRNVEAMNFADIELTIAALGEKARTGKYT 431 (431)
Q Consensus 403 i~~a~~~~l~~ia~~~~~l~~~ar~g~L~ 431 (431)
|||||+|||.||++++++|+++||+|+|+
T Consensus 228 Ir~a~~~sl~eIa~~i~~l~~~Ar~~kL~ 256 (347)
T PRK14843 228 VYNAEKMSLSELVVAFKDVIGRTLDGKLA 256 (347)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999986
No 23
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed
Probab=99.88 E-value=1.4e-22 Score=201.32 Aligned_cols=107 Identities=30% Similarity=0.435 Sum_probs=97.1
Q ss_pred eeeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeC--CeeEEcCCcceEEEEecCCCeee
Q psy14345 323 RLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEG--TDIVYRDYVDISVAVATPKGLVV 400 (431)
Q Consensus 323 RvIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~--~~i~~~~~vnigvAV~~~~GL~v 400 (431)
+.||.+...++++++++. +.+++|.|+|+++||+||++.||++||.+|++|++ +.|+++++|||||||++++||+|
T Consensus 106 ~evd~t~l~~~r~~~~~~--~~~~~g~kls~~~~likA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~GL~v 183 (306)
T PRK11857 106 NEIDMTKLWDLRKSVKDP--VLKTEGVKLTFLPFIAKAILIALKEFPIFAAKYDEATSELVYPDTLNLGIAVDTEAGLMV 183 (306)
T ss_pred EEEEchHHHHHHHHHHHh--hhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEEEeCCCCEEEEcCCccEEEEEECCCCEEe
Confidence 347888999999888742 22345899999999999999999999999999974 48999999999999999999999
Q ss_pred ceecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345 401 PVIRNVEAMNFADIELTIAALGEKARTGKYT 431 (431)
Q Consensus 401 Pvi~~a~~~~l~~ia~~~~~l~~~ar~g~L~ 431 (431)
|||||||+|||.||++++++|+++||+|+|+
T Consensus 184 PVI~~a~~~sl~eIa~~i~~l~~~Ar~~kL~ 214 (306)
T PRK11857 184 PVIKNAQKLSIVEIAKEISRLAKAARERKIK 214 (306)
T ss_pred CCcCCcCcCCHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999985
No 24
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=99.88 E-value=1.3e-22 Score=209.75 Aligned_cols=113 Identities=52% Similarity=0.765 Sum_probs=101.3
Q ss_pred eeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCCeeEEcCCcceEEE
Q psy14345 312 PMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVA 391 (431)
Q Consensus 312 ~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~~i~~~~~vnigvA 391 (431)
|++++... +|.+...+|++++++. +.+++|.|+|+++||+||++.||++||.+|++|+++.|+++++||||||
T Consensus 258 Ph~t~~~e-----vDvt~L~~lR~~l~~~--~~~~~g~klS~~~~liKAva~AL~~~P~lNa~~~~~~i~~~~~vnIGvA 330 (463)
T PLN02226 258 ALLTTFNE-----VDMTNLMKLRSQYKDA--FYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVIDGDDIIYRDYVDISIA 330 (463)
T ss_pred CEEEEEEE-----EEcHHHHHHHHHHHhh--hhhhcCCcccHHHHHHHHHHHHHHhCCHhheEEcCCEEEEeCcccEEEE
Confidence 45555444 6778999999888742 2234588999999999999999999999999999999999999999999
Q ss_pred EecCCCeeeceecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345 392 VATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGKYT 431 (431)
Q Consensus 392 V~~~~GL~vPvi~~a~~~~l~~ia~~~~~l~~~ar~g~L~ 431 (431)
|++++||+||||||||+|+|.||++++++|++|||+|+|+
T Consensus 331 V~t~~GLvVPVIr~ad~~sl~eIa~ei~~L~~kAR~gkL~ 370 (463)
T PLN02226 331 VGTSKGLVVPVIRGADKMNFAEIEKTINGLAKKANEGTIS 370 (463)
T ss_pred EECCCCEEeccCCCcccCCHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999986
No 25
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=99.88 E-value=2.8e-22 Score=206.10 Aligned_cols=106 Identities=56% Similarity=0.801 Sum_probs=97.9
Q ss_pred eeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCCeeEEcCCcceEEEEecCCCeeecee
Q psy14345 324 LIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVVPVI 403 (431)
Q Consensus 324 vIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~~i~~~~~vnigvAV~~~~GL~vPvi 403 (431)
.+|.+....+++.+++. +.++.|.|+|+|+||+||++.||++||.+|++|+++.|++++++||||||++++||+||||
T Consensus 205 evd~t~l~~~r~~~~~~--~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~i~~~~~vnIgvAv~~~~GL~vPVI 282 (403)
T TIGR01347 205 EVDMSAVMELRKRYKEE--FEKKHGVKLGFMSFFVKAVVAALKRFPEVNAEIDGDDIVYKDYYDISVAVSTDRGLVVPVV 282 (403)
T ss_pred EEEHHHHHHHHHHHHhh--hHhhcCCCcCHHHHHHHHHHHHHHhCcHhheEEcCCEEEEcCCCCeEEEEECCCCeEECcC
Confidence 47888999999888742 2334588999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345 404 RNVEAMNFADIELTIAALGEKARTGKYT 431 (431)
Q Consensus 404 ~~a~~~~l~~ia~~~~~l~~~ar~g~L~ 431 (431)
||||+|||.||++++++|++|||+|+|+
T Consensus 283 r~ad~~sl~eIa~~~~~l~~~ar~gkL~ 310 (403)
T TIGR01347 283 RNADRMSFADIEKEIADLGKKARDGKLT 310 (403)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999986
No 26
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=99.88 E-value=2.6e-22 Score=206.11 Aligned_cols=113 Identities=55% Similarity=0.769 Sum_probs=101.0
Q ss_pred eeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCCeeEEcCCcceEEE
Q psy14345 312 PMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVA 391 (431)
Q Consensus 312 ~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~~i~~~~~vnigvA 391 (431)
||+++... ||.+...++++++++. ..+++|.|+|+++||+||++.||++||.+|++|+++.|++++++|||||
T Consensus 213 Ph~t~~~e-----id~t~l~~~r~~~~~~--~~~~~g~klS~~~~liKAva~AL~~~P~~Na~~~~~~i~~~~~vnIgvA 285 (418)
T PTZ00144 213 AMLTTFNE-----CDMSALMELRKEYKDD--FQKKHGVKLGFMSAFVKASTIALKKMPIVNAYIDGDEIVYRNYVDISVA 285 (418)
T ss_pred CeEEEEEE-----EechHHHHHHHHHHhh--hhhhcCCcccHHHHHHHHHHHHHHhChHhheEEcCCEEEEecCCCEEEE
Confidence 45555443 6778999999888742 2234588999999999999999999999999999989999999999999
Q ss_pred EecCCCeeeceecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345 392 VATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGKYT 431 (431)
Q Consensus 392 V~~~~GL~vPvi~~a~~~~l~~ia~~~~~l~~~ar~g~L~ 431 (431)
|++++||+||||||||+|||.||++++++|++|||+|+|+
T Consensus 286 V~~~~GL~vPVI~~ad~~sl~eIa~ei~~L~~~ar~g~L~ 325 (418)
T PTZ00144 286 VATPTGLVVPVIRNCENKSFAEIEKELADLAEKARNNKLT 325 (418)
T ss_pred EECCCCEEEccCCCcccCCHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999985
No 27
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=99.87 E-value=3.2e-22 Score=206.04 Aligned_cols=106 Identities=49% Similarity=0.768 Sum_probs=97.7
Q ss_pred eeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCCeeEEcCCcceEEEEecCCCeeecee
Q psy14345 324 LIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVVPVI 403 (431)
Q Consensus 324 vIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~~i~~~~~vnigvAV~~~~GL~vPvi 403 (431)
.+|.+....|++++++. +.++.|.|+|+++||+||++.||++||.+|++|+++.|++++++||||||++++||+||||
T Consensus 209 evd~~~l~~~r~~~~~~--~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~i~~~~~~nIgiAv~~~~GLivPVI 286 (407)
T PRK05704 209 EVDMTPVMDLRKQYKDA--FEKKHGVKLGFMSFFVKAVVEALKRYPEVNASIDGDDIVYHNYYDIGIAVGTPRGLVVPVL 286 (407)
T ss_pred EEeHHHHHHHHHHHHhh--hHhhcCCCcCHHHHHHHHHHHHHHhCcHhhcEEcCCeEEEcCCCCeEEEEECCCceEeCcC
Confidence 37888999999888742 2234578999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345 404 RNVEAMNFADIELTIAALGEKARTGKYT 431 (431)
Q Consensus 404 ~~a~~~~l~~ia~~~~~l~~~ar~g~L~ 431 (431)
||||+|||.||++++++|++|||+|+|+
T Consensus 287 ~~a~~~sl~eIa~~~~~l~~~ar~g~L~ 314 (407)
T PRK05704 287 RDADQLSFAEIEKKIAELAKKARDGKLS 314 (407)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999985
No 28
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=99.87 E-value=5.3e-22 Score=213.19 Aligned_cols=106 Identities=31% Similarity=0.474 Sum_probs=96.4
Q ss_pred eeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeC--CeeEEcCCcceEEEEecCCCeeec
Q psy14345 324 LIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEG--TDIVYRDYVDISVAVATPKGLVVP 401 (431)
Q Consensus 324 vIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~--~~i~~~~~vnigvAV~~~~GL~vP 401 (431)
.+|.+.+..|++.+++. +.+++|.|||+++||+||++.||++||.+|++|++ +.|+++++|||||||++++||+||
T Consensus 384 evdvt~l~~~R~~l~~~--~~~~~~~kls~~~~iiKA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~t~~GL~vP 461 (590)
T TIGR02927 384 EVDMTKIAALRARAKAA--FAEKEGVNLTFLPFFAKAVIDALKAHPNVNASYNADTKEITYHAAEHLGFAVDTDAGLLSP 461 (590)
T ss_pred EEEcHHHHHHHHHHHhh--hHHhcCCcccHHHHHHHHHHHHHHhCCHhheEEecCCCEEEEeCCccEEEEEECCCCcEec
Confidence 37788999999988742 22335789999999999999999999999999964 589999999999999999999999
Q ss_pred eecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345 402 VIRNVEAMNFADIELTIAALGEKARTGKYT 431 (431)
Q Consensus 402 vi~~a~~~~l~~ia~~~~~l~~~ar~g~L~ 431 (431)
||||+|+|||.||++++++|++|||+|+|+
T Consensus 462 vIk~a~~~sl~~ia~~i~~l~~kAr~gkL~ 491 (590)
T TIGR02927 462 VIHNAGDLSLGEIAKAIADIAARARNGKLK 491 (590)
T ss_pred ccCCcccCCHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999996
No 29
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=99.87 E-value=6.5e-22 Score=208.39 Aligned_cols=106 Identities=26% Similarity=0.324 Sum_probs=97.4
Q ss_pred eeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCCeeEEcCCcceEEEEecCCCeeecee
Q psy14345 324 LIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVVPVI 403 (431)
Q Consensus 324 vIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~~i~~~~~vnigvAV~~~~GL~vPvi 403 (431)
.+|.+.+..|+++++... .+..|.|+|+++||+||++.||++||.+|++|+++.|+++++|||||||++++||+||||
T Consensus 340 evdvt~L~~lR~~l~~~~--~~~~g~kls~~~~liKA~a~AL~~~P~lNa~~~~~~i~~~~~vnIgvAV~t~~GL~vPVI 417 (539)
T PLN02744 340 DTRVDKLMALRSQLNSLQ--EASGGKKISVNDLVIKAAALALRKVPQCNSSWTDDYIRQYHNVNINVAVQTENGLYVPVV 417 (539)
T ss_pred EEEcHHHHHHHHHHHHHh--hhcccCccCHHHHHHHHHHHHHHhCcHhheeeccCcEEEeCCcceEEEEECCCCeEECcC
Confidence 367789999998887432 233478999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345 404 RNVEAMNFADIELTIAALGEKARTGKYT 431 (431)
Q Consensus 404 ~~a~~~~l~~ia~~~~~l~~~ar~g~L~ 431 (431)
||||+|||.||++++++|++|||+|+|+
T Consensus 418 r~ad~~sl~eIa~ei~~L~~kAr~~kL~ 445 (539)
T PLN02744 418 KDADKKGLSTIAEEVKQLAQKARENSLK 445 (539)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999995
No 30
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=99.86 E-value=1.9e-21 Score=202.08 Aligned_cols=104 Identities=33% Similarity=0.407 Sum_probs=96.6
Q ss_pred eeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCCeeEEcCCcceEEEEecCCCeeecee
Q psy14345 324 LIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVVPVI 403 (431)
Q Consensus 324 vIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~~i~~~~~vnigvAV~~~~GL~vPvi 403 (431)
.+|.+.+..|++.+++.. .+ |.|+|+++||+||++.||++||.+|++|+++.|+++++|||||||++++||+||||
T Consensus 238 evd~t~l~~~r~~~~~~~---~~-~~klt~~~~l~kA~a~AL~~~P~~Na~~~~~~i~~~~~vnigvAv~~~~GL~vPvi 313 (435)
T TIGR01349 238 ECNVDKLLALRKELNAMA---SE-VYKLSVNDFIIKASALALREVPEANSSWTDNFIRRYKNVDISVAVATPDGLITPIV 313 (435)
T ss_pred EEEhHHHHHHHHHHHhhh---hc-CCcccHHHHHHHHHHHHHHhCcHhheEEeCCeEEEeCCeeEEEEEECCCCeEECCC
Confidence 378899999998887431 12 78999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345 404 RNVEAMNFADIELTIAALGEKARTGKYT 431 (431)
Q Consensus 404 ~~a~~~~l~~ia~~~~~l~~~ar~g~L~ 431 (431)
||+|+|||.||++++++|+++||+|+|+
T Consensus 314 ~~a~~~sl~eia~~i~~l~~~ar~~~L~ 341 (435)
T TIGR01349 314 RNADAKGLSTISNEIKDLAKRARNNKLK 341 (435)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999985
No 31
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=99.85 E-value=4.1e-21 Score=198.48 Aligned_cols=105 Identities=27% Similarity=0.353 Sum_probs=95.6
Q ss_pred eeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCC--eeEEcCCcceEEEEecCCCeeec
Q psy14345 324 LIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGT--DIVYRDYVDISVAVATPKGLVVP 401 (431)
Q Consensus 324 vIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~--~i~~~~~vnigvAV~~~~GL~vP 401 (431)
.+|.+.+..+++.+++. ..+.|.|+|+++||+||++.||++||.+|++|+++ .|++++++||||||++++||+||
T Consensus 215 eid~~~l~~~r~~~~~~---~~~~g~kls~~~~likA~a~aL~~~P~~Na~~~~~~~~i~~~~~vnIgiAv~~~~GL~vP 291 (416)
T PLN02528 215 EINVDALVELKASFQEN---NTDPTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVP 291 (416)
T ss_pred EEEhHHHHHHHHHHhhh---hhhcCCcccHHHHHHHHHHHHHHhCchhhEEEecCCceEEEeCCCCeEEEEeCCCCeEec
Confidence 37788888888887743 22348899999999999999999999999999765 79999999999999999999999
Q ss_pred eecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345 402 VIRNVEAMNFADIELTIAALGEKARTGKYT 431 (431)
Q Consensus 402 vi~~a~~~~l~~ia~~~~~l~~~ar~g~L~ 431 (431)
||||+|++|+.||++++++|++|||+|+|+
T Consensus 292 vi~~a~~~sl~eI~~~~~~l~~~ar~gkL~ 321 (416)
T PLN02528 292 NIKNVQSLSLLEITKELSRLQHLAAENKLN 321 (416)
T ss_pred ccCCcccCCHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999985
No 32
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=99.84 E-value=6.7e-21 Score=203.15 Aligned_cols=105 Identities=36% Similarity=0.561 Sum_probs=95.8
Q ss_pred eeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeC--CeeEEcCCcceEEEEecCCCeeec
Q psy14345 324 LIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEG--TDIVYRDYVDISVAVATPKGLVVP 401 (431)
Q Consensus 324 vIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~--~~i~~~~~vnigvAV~~~~GL~vP 401 (431)
-+|.+.+..|++.+++.. .+.|.|+|+++||+||++.||++||.+|++|++ +.|+++++|||||||++++||+||
T Consensus 349 evdvt~l~~~r~~l~~~~---~~~g~kls~~~~l~kA~~~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~GL~vP 425 (546)
T TIGR01348 349 KADITEMEAFRKQQNAAV---EKEGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIGVAVDTPNGLLVP 425 (546)
T ss_pred EEEcHHHHHHHHHHHhhh---hhcCCcccHHHHHHHHHHHHHHhCChhhEEEeCCCCEEEEeCCcCEEEEEECCCCeEEC
Confidence 378889999998887422 224789999999999999999999999999974 579999999999999999999999
Q ss_pred eecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345 402 VIRNVEAMNFADIELTIAALGEKARTGKYT 431 (431)
Q Consensus 402 vi~~a~~~~l~~ia~~~~~l~~~ar~g~L~ 431 (431)
||||+|+|||.+|++++++|++|||+|+|+
T Consensus 426 vi~~a~~~sl~~ia~~~~~l~~~ar~g~L~ 455 (546)
T TIGR01348 426 VIKDVDRKGITELALELSDLAKKARDGKLT 455 (546)
T ss_pred CcCCcccCCHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999996
No 33
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.81 E-value=5.4e-20 Score=199.06 Aligned_cols=118 Identities=25% Similarity=0.286 Sum_probs=105.4
Q ss_pred eeeeeeeeee----eeeeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeee--CC--eeEEc
Q psy14345 312 PMMYVALTYD----HRLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIE--GT--DIVYR 383 (431)
Q Consensus 312 ~~m~lslt~D----HRvIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~--~~--~i~~~ 383 (431)
+.|..+++++ +|.|+...+..++..+++. +....|.|+|+||||+||++.||++||.+|++|+ ++ .|+++
T Consensus 129 kNM~aSL~vPtaTsvr~Ip~k~L~dnR~~In~~--l~r~~GgKVSFThlI~kAvv~AL~~~P~mNasy~~~DGKp~iv~~ 206 (1228)
T PRK12270 129 KNMDASLEVPTATSVRAVPAKLLIDNRIVINNH--LKRTRGGKVSFTHLIGYALVQALKAFPNMNRHYAEVDGKPTLVTP 206 (1228)
T ss_pred HHHHhhhccCceeeeecccHHHHHHHHHHHHHH--hhhccCCcccHHHHHHHHHHHHHHhCchhhceeeccCCCceeecc
Confidence 3466666666 5789999999999988853 3456799999999999999999999999999997 44 49999
Q ss_pred CCcceEEEEecC-----CCeeeceecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345 384 DYVDISVAVATP-----KGLVVPVIRNVEAMNFADIELTIAALGEKARTGKYT 431 (431)
Q Consensus 384 ~~vnigvAV~~~-----~GL~vPvi~~a~~~~l~~ia~~~~~l~~~ar~g~L~ 431 (431)
++|||||||+++ +||+|||||+||+|++.||+.++++|+.|||+|||+
T Consensus 207 ~~VNlGiAVdl~~~dGsRgLVVPvIK~Ad~l~f~ef~~ay~dLV~KAR~gKLt 259 (1228)
T PRK12270 207 AHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQFWAAYEDIVRRARDGKLT 259 (1228)
T ss_pred CCcceEEEEecCCCCCCcceeeccccccccCCHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999 689999999999999999999999999999999996
No 34
>KOG0559|consensus
Probab=99.80 E-value=1.3e-19 Score=177.30 Aligned_cols=105 Identities=71% Similarity=1.009 Sum_probs=100.4
Q ss_pred eehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCCeeEEcCCcceEEEEecCCCeeeceec
Q psy14345 325 IDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVVPVIR 404 (431)
Q Consensus 325 IDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~~i~~~~~vnigvAV~~~~GL~vPvi~ 404 (431)
||...++.+++..+ +++.+++|+|+.+..+|+||++.||++.|.+|+.++|+.|+|+++|||+|||+|+.||+|||||
T Consensus 260 vDMS~lm~mRk~yk--daf~kKhGvKlGfMs~F~KA~~~Alq~qPvVNavIdg~~iVYRDyvDISvAVaTpkGLVvPViR 337 (457)
T KOG0559|consen 260 VDMSNLMEMRKQYK--DAFLKKHGVKLGFMSGFSKAAAYALQDQPVVNAVIDGDDIVYRDYVDISVAVATPKGLVVPVIR 337 (457)
T ss_pred hhHHHHHHHHHHHH--HHHHHHhCceeeehhHHHHHHHHHhhhCcceeeeecCCeeEEeecceeEEEeecCCceeeeeec
Confidence 78889999888776 5677899999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345 405 NVEAMNFADIELTIAALGEKARTGKYT 431 (431)
Q Consensus 405 ~a~~~~l~~ia~~~~~l~~~ar~g~L~ 431 (431)
|++.+++.||-.++..|..|||+|+|+
T Consensus 338 nae~Mn~adIE~~i~~L~~KAr~g~la 364 (457)
T KOG0559|consen 338 NAESMNFADIEKTIAGLGKKARDGKLA 364 (457)
T ss_pred ccccccHHHHHHHHHHHHHhhccCcee
Confidence 999999999999999999999999985
No 35
>KOG0558|consensus
Probab=99.78 E-value=7.3e-20 Score=178.11 Aligned_cols=130 Identities=32% Similarity=0.466 Sum_probs=112.0
Q ss_pred EEEeeeCC-eEEEeeeeeeeeeeeeee----eehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccce
Q psy14345 299 ERPVAIKG-QVVVKPMMYVALTYDHRL----IDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNA 373 (431)
Q Consensus 299 ~~pv~~~g-~~~~~~~m~lslt~DHRv----IDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na 373 (431)
++.++..| +-...+.|+..+.++|+- ||.+.+.+|+..+++ +..+.++|+|+.+|++||++.||.+||.+|+
T Consensus 243 Dkt~plrGf~rAMvKtMt~alkiPHF~y~dEIn~~sLvklr~elk~---~a~e~~IKltfmPf~iKaaSlaL~kyP~vNs 319 (474)
T KOG0558|consen 243 DKTVPLRGFSRAMVKTMTEALKIPHFGYVDEINCDSLVKLRQELKE---NAKERGIKLTFMPFFIKAASLALLKYPIVNS 319 (474)
T ss_pred cceeechhHHHHHHHHHHHHhcCCccccccccChHHHHHHHHHHhh---hhhhcCceeeehHHHHHHHHHHHhhCccccc
Confidence 44555445 222235688889999974 788888888877764 4556799999999999999999999999999
Q ss_pred eeeC--CeeEEcCCcceEEEEecCCCeeeceecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345 374 VIEG--TDIVYRDYVDISVAVATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGKYT 431 (431)
Q Consensus 374 ~~~~--~~i~~~~~vnigvAV~~~~GL~vPvi~~a~~~~l~~ia~~~~~l~~~ar~g~L~ 431 (431)
+++. +.|++..++|||+|++|+.||+||.|||++.+|+-||++++.+|.++++.|+|+
T Consensus 320 s~d~~~e~ii~K~sHNIgvAmdT~~GLvVPNiKN~q~~si~eIakeLnrLq~~g~~~qls 379 (474)
T KOG0558|consen 320 SFDEESENIILKGSHNIGVAMDTEQGLVVPNIKNVQSLSIFEIAKELNRLQELGANGQLS 379 (474)
T ss_pred hhhhhhhhhhhhcccceeEEecCCCceeccCccccchhhHHHHHHHHHHHHHhhhcCCcC
Confidence 9976 589999999999999999999999999999999999999999999999999985
No 36
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.77 E-value=2e-18 Score=187.39 Aligned_cols=107 Identities=32% Similarity=0.503 Sum_probs=95.6
Q ss_pred eeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeee--CCeeEEcCCcceEEEEecCCCeeec
Q psy14345 324 LIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIE--GTDIVYRDYVDISVAVATPKGLVVP 401 (431)
Q Consensus 324 vIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~--~~~i~~~~~vnigvAV~~~~GL~vP 401 (431)
-+|.+....|++.++... ...+.|.|+|+++||+||++.||++||.+|++|+ ++.|+++++||||+||++++||+||
T Consensus 434 evD~t~l~~~rk~~~~~~-~~~~~g~k~t~~~~likAva~Al~~~P~~Na~~~~~~~~i~~~~~vnigiAV~~~~GL~vP 512 (633)
T PRK11854 434 KADITELEAFRKQQNAEA-EKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIAVDTPNGLVVP 512 (633)
T ss_pred EEEcHHHHHHHHHHhhhh-hhhcccCcccHHHHHHHHHHHHHHhCCHhhEEEecCCCEEEEecccCEEEEEECCCceEEe
Confidence 378888888888776421 1224588999999999999999999999999996 5689999999999999999999999
Q ss_pred eecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345 402 VIRNVEAMNFADIELTIAALGEKARTGKYT 431 (431)
Q Consensus 402 vi~~a~~~~l~~ia~~~~~l~~~ar~g~L~ 431 (431)
||||+++++|.+|++++++|++++|+|+|+
T Consensus 513 vi~~a~~~sl~~i~~~~~~l~~~ar~~~l~ 542 (633)
T PRK11854 513 VFKDVNKKGIIELSRELMDISKKARDGKLT 542 (633)
T ss_pred eECCCccCCHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999985
No 37
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=99.76 E-value=2.3e-18 Score=177.39 Aligned_cols=104 Identities=45% Similarity=0.672 Sum_probs=95.8
Q ss_pred eehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCC--eeEEcCCcceEEEEecCCCeeece
Q psy14345 325 IDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGT--DIVYRDYVDISVAVATPKGLVVPV 402 (431)
Q Consensus 325 IDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~--~i~~~~~vnigvAV~~~~GL~vPv 402 (431)
+|.+....+++.++.... ++ +.|+|+++|++||++.||++||.+|++|+++ .+.+++++|||+||++++||+|||
T Consensus 207 vd~t~l~~lr~~~~~~~~--~~-g~klt~~~f~~kA~~~Alk~~P~~Na~~~~~~~~iv~~~~~~igiAv~t~~GLvvpV 283 (404)
T COG0508 207 VDMTKLMALRKKLKEEFE--KK-GVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVPV 283 (404)
T ss_pred ecHHHHHHHHHHhhhhhc--cc-CccccHHHHHHHHHHHHHHhCCccceeeccccceEEEeccccEEEEEecCCCeEecc
Confidence 678888888888875332 33 9999999999999999999999999999875 899999999999999999999999
Q ss_pred ecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345 403 IRNVEAMNFADIELTIAALGEKARTGKYT 431 (431)
Q Consensus 403 i~~a~~~~l~~ia~~~~~l~~~ar~g~L~ 431 (431)
|||||++++.+|+.++++|+.|||+|+|+
T Consensus 284 ir~a~~~~~~~i~~~i~~la~~aR~~kl~ 312 (404)
T COG0508 284 IRDADKKSLAEIAKEIKDLAKKARDGKLT 312 (404)
T ss_pred eeecccCCHHHHHHHHHHHHHHHHhcCcC
Confidence 99999999999999999999999999985
No 38
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=99.70 E-value=5.4e-17 Score=173.73 Aligned_cols=104 Identities=38% Similarity=0.610 Sum_probs=94.7
Q ss_pred eehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeee--CCeeEEcCCcceEEEEecCCCeeece
Q psy14345 325 IDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIE--GTDIVYRDYVDISVAVATPKGLVVPV 402 (431)
Q Consensus 325 IDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~--~~~i~~~~~vnigvAV~~~~GL~vPv 402 (431)
+|.+.+..+++.+++.. ++.|.|+|+++||+||+++||++||.||++|+ ++.|+++++||||+||++++||++||
T Consensus 351 vd~t~l~~~r~~~~~~~---~~~g~k~s~~~~likAv~~al~~~P~ln~~~~~~~~~i~~~~~i~i~~Av~~~~gl~vpv 427 (547)
T PRK11855 351 ADITDLEALRKQLKKEA---EKAGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIGFAVDTPNGLVVPV 427 (547)
T ss_pred EEChHHHHHHHHhhhhh---hhcCCCCCHHHHHHHHHHHHHHhCcHhhEEEccCCCEEEEeCCccEEEEEECCCccEeCC
Confidence 78888888888877421 23478999999999999999999999999997 56899999999999999999999999
Q ss_pred ecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345 403 IRNVEAMNFADIELTIAALGEKARTGKYT 431 (431)
Q Consensus 403 i~~a~~~~l~~ia~~~~~l~~~ar~g~L~ 431 (431)
|+|+++++|.+|++++++|++++|+|+|+
T Consensus 428 i~~~~~~sl~~i~~~~~~l~~~ar~~~l~ 456 (547)
T PRK11855 428 IKDVDKKSLLEIAREIAELAKKARDGKLK 456 (547)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999984
No 39
>KOG0557|consensus
Probab=99.69 E-value=1.3e-17 Score=169.02 Aligned_cols=120 Identities=33% Similarity=0.388 Sum_probs=99.7
Q ss_pred eEEEeeeeeeeeeeeeeeeeh----HHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeC-CeeE
Q psy14345 307 QVVVKPMMYVALTYDHRLIDG----REAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEG-TDIV 381 (431)
Q Consensus 307 ~~~~~~~m~lslt~DHRvIDg----~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~-~~i~ 381 (431)
.+...+++....+++|+.+.. .....+++.++ .++.+.++|+++||+||.+.||+++|++|++|.+ +.|+
T Consensus 252 ~viakrl~eSk~~IPh~yvt~~~~~d~ll~~r~~ln-----~~~~~~~vsvndliiKAaa~al~~vPevNs~w~~~~~i~ 326 (470)
T KOG0557|consen 252 RVIAKRLLESKQTIPHYYVTVDVNLDKLLALREKLN-----FEKSIKKVSLNDLIAKAAALALAKVPEVNSSWMDELVIR 326 (470)
T ss_pred hhhhhhhhhhhcCCCeEEEeeeeehHHHHHHHHHhh-----hcccCcccchhHHHHHHHHHHHhcCCcccceecCCcccc
Confidence 344445555556666655433 34455555544 2356789999999999999999999999999977 8999
Q ss_pred EcCCcceEEEEecCCCeeeceecCcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345 382 YRDYVDISVAVATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGKYT 431 (431)
Q Consensus 382 ~~~~vnigvAV~~~~GL~vPvi~~a~~~~l~~ia~~~~~l~~~ar~g~L~ 431 (431)
+++.|||.+||++++||++|+|+|+|.++|.+|+.++++|+.+||.|+|.
T Consensus 327 ~~~~VdisvAVat~~GLitPii~na~~kgl~~is~~vkel~~kAr~~kL~ 376 (470)
T KOG0557|consen 327 QLSSVDISVAVATPNGLITPIIQNADAKGLSTISSKVKELAQKAREGKLQ 376 (470)
T ss_pred ccCcCChhheeeccCcccchhhhhcccccHHHHHHHHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999999999999999999983
No 40
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=99.68 E-value=2.1e-16 Score=163.78 Aligned_cols=100 Identities=37% Similarity=0.535 Sum_probs=92.3
Q ss_pred eehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCCeeEEcCCcceEEEEecCCCeeeceec
Q psy14345 325 IDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVVPVIR 404 (431)
Q Consensus 325 IDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~~i~~~~~vnigvAV~~~~GL~vPvi~ 404 (431)
||.+.+..+++.+++ .+.++|+++|++||+++||++||++|++|+++.++++++||||+||++++||++|||+
T Consensus 220 idvt~l~~~~k~~~~-------~~~~ls~~~~~ikav~~Al~~~P~~n~~~~~~~i~~~~~i~i~~av~~~~gl~~pvi~ 292 (411)
T PRK11856 220 VDVTALLALRKQLKA-------IGVKLTVTDFLIKAVALALKKFPELNASWDDDAIVLKKYVNIGIAVATDGGLIVPVIR 292 (411)
T ss_pred EEhHHHHHHHHHHHh-------hccCccHHHHHHHHHHHHHHhCcHhheEEeCCEEEEcCCcCEEEEEECCCCeEeCcCC
Confidence 677888888777642 1379999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCHHHHHHHHHHHHHHHHcCCCC
Q psy14345 405 NVEAMNFADIELTIAALGEKARTGKYT 431 (431)
Q Consensus 405 ~a~~~~l~~ia~~~~~l~~~ar~g~L~ 431 (431)
+++++++.+|+++++++++++|+|+|+
T Consensus 293 ~~~~~sl~ei~~~~~~~~~~ar~~~l~ 319 (411)
T PRK11856 293 DADKKSLFELAREIKDLAEKAREGKLK 319 (411)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999874
No 41
>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2.3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....
Probab=99.58 E-value=7.4e-14 Score=131.60 Aligned_cols=178 Identities=15% Similarity=0.140 Sum_probs=131.9
Q ss_pred ccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceeeeCC-eeEecCcccEEEEEee
Q psy14345 126 NVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGT-DIVYRDYVDISVGMGR 204 (431)
Q Consensus 126 ~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~~~-~i~~~~~v~igvav~~ 204 (431)
..-|+++++.+||+|.|.++.|+ .+++|+..+++++.+|+.++|+|+-++.++ ++++++.+|.+.+|..
T Consensus 23 ~~~p~~svT~~lDvT~l~~~~K~----------~~~~Ff~~~ly~i~ka~N~~~efR~ri~~~g~v~~~d~i~ps~Tv~~ 92 (206)
T PF00302_consen 23 FDNPYFSVTVNLDVTNLYKYAKE----------KGLSFFPAYLYAIMKAANEIPEFRYRIVDDGEVVYYDRIDPSYTVFH 92 (206)
T ss_dssp TSBEEEEEEEEEE-HHHHHHHHH----------TT--HHHHHHHHHHHHHTTSGGGCEEEETTSCEEEESS-EEEEEEEE
T ss_pred CCCceEecceeEEhHHHHHHHHH----------cCCCcHHHHHHHHHHHHhcCHHHheeeeCCCcEEEECCcceeeeEEe
Confidence 36799999999999999987765 368999999999999999999999999987 9999999999999987
Q ss_pred cCCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCccc-CCCceEEEecCCCCCccceeec
Q psy14345 205 NESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIED-SDGGTFTISNGGVFGSLLGTPI 283 (431)
Q Consensus 205 ~~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~-~~ggTftiSn~G~~G~~~~~pi 283 (431)
+. ++.+ -.+.-....+ + .++.+...+.+++++....+.+++ .....|.+|++.|+..++++.-
T Consensus 93 -----~~---~~tF-s~~~~~y~~d--f-----~~F~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~S~lPW~~FTs~~~~ 156 (206)
T PF00302_consen 93 -----KD---DETF-SFCWTEYDED--F-----EEFYANYEADIERYKESKGLFPKPNDPDNLIYISCLPWVSFTSFSHP 156 (206)
T ss_dssp -----TT---TTEE-EEEEE---SS--H-----HHHHHHHHHHHHHHTTS-SSSTTCCHHSSEEEEEEETTS--SEEEEE
T ss_pred -----CC---CCeE-EEEEecCCCC--H-----HHHHHHHHHHHHHHhccccccCCCCCCcCEEEEecccceeccccccc
Confidence 41 3433 3333344556 9 999999999999987456676664 4557999999999999988765
Q ss_pred cCCC-c--ceeeeccceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHH
Q psy14345 284 INPP-Q--SAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKE 337 (431)
Q Consensus 284 i~pp-q--~ail~vG~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~l 337 (431)
++.+ . .-++..|+..++ +| +-.|++++.+.|.++||-.+.+|++++
T Consensus 157 ~~~~~~~~~P~it~GK~~~~----~g----r~~mPvsiqvhHa~~DG~Hv~~F~~~l 205 (206)
T PF00302_consen 157 VPNGKDDSIPRITWGKYFEE----NG----RLLMPVSIQVHHALVDGYHVGQFFEEL 205 (206)
T ss_dssp ESSTTT-SS-EEEEE--EEE----TT----EEEEEEEEEEETTT--HHHHHHHHHHH
T ss_pred ccCCCcccccEEEeeeeEeE----CC----EEEEEEEEEEecccccHHHHHHHHHHh
Confidence 5543 2 235666666543 23 567999999999999999999999876
No 42
>PRK13757 chloramphenicol acetyltransferase; Provisional
Probab=99.54 E-value=3.8e-13 Score=127.70 Aligned_cols=179 Identities=14% Similarity=0.081 Sum_probs=140.7
Q ss_pred ceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceeeeCCeeEecCcccEEEEEeecCC
Q psy14345 128 NAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNES 207 (431)
Q Consensus 128 iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~~~~i~~~~~v~igvav~~~~~ 207 (431)
-|+|.++++||+|+|+++.|+ .+++|++.+++|+++|+.++|+|+-++.+++++.++.+|.+++|..
T Consensus 30 ~~~fsiT~~iDiT~l~~~~K~----------~~~~fy~~~ly~v~kavN~~~eFR~r~~~~~v~~~D~i~ps~Ti~~--- 96 (219)
T PRK13757 30 QCTYNQTVQLDITAFLKTVKK----------NKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFH--- 96 (219)
T ss_pred CCceEEEEEEEHHHHHHHHHH----------cCCChHHHHHHHHHHHHhcCHhHheEEECCeEEEEeEEeeeEEEEe---
Confidence 345999999999999987665 3689999999999999999999999999999999999999999998
Q ss_pred CCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCCCceEEEecCCCCCccceeeccCC-
Q psy14345 208 NLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINP- 286 (431)
Q Consensus 208 ~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~ggTftiSn~G~~G~~~~~pii~p- 286 (431)
+ ++-..-.+.-...-+ + .++.+...+.++++..+..+-+++.....|.||++.|+..++++.-++.
T Consensus 97 --~----~~~tFs~~~~~y~~d--f-----~~F~~~~~~~~~~~~~~~~~~~~~~~~n~~~iS~iPW~sFTs~~~~~~~~ 163 (219)
T PRK13757 97 --E----QTETFSSLWSEYHDD--F-----RQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANM 163 (219)
T ss_pred --C----CCceEEEEEecCcCC--H-----HHHHHHHHHHHHHHhcCccccCCCCCCCeEEeecccCcCccccccccccC
Confidence 4 322344444445556 8 8898888888888882345656555668999999999999988655443
Q ss_pred Ccce--eeeccceeEEEeeeCCeEEEeeeeeeeeeeeeeeeehHHHHHHHHHHHhH
Q psy14345 287 PQSA--ILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHL 340 (431)
Q Consensus 287 pq~a--il~vG~i~~~pv~~~g~~~~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l 340 (431)
...+ ++..|+..++ + -+-.|++++.+.|.++||..+.+|++.+.+.
T Consensus 164 ~~~~~P~it~GKy~~~----~----gr~~mPvSvqvHHa~~DG~Hv~~F~~~lQ~~ 211 (219)
T PRK13757 164 DNFFAPVFTMGKYYTQ----G----DKVLMPLAIQVHHAVCDGFHVGRMLNELQQY 211 (219)
T ss_pred CCCcCcEEEeeceEEE----C----CEEEEEEEEEEehhccchHHHHHHHHHHHHH
Confidence 3223 4445544322 2 3467999999999999999999999998754
No 43
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]
Probab=99.05 E-value=5.2e-09 Score=96.36 Aligned_cols=184 Identities=13% Similarity=0.051 Sum_probs=143.5
Q ss_pred ccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccceeeeCCeeEecCcccEEEEEeec
Q psy14345 126 NVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRN 205 (431)
Q Consensus 126 ~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N~~~~~~~i~~~~~v~igvav~~~ 205 (431)
..+||+.++.+.|++.+....++ .+++|+..++.|+.+++.+|++|+-++.++...+++.++..+.|..
T Consensus 26 ~~~p~y~i~~~LDvtn~~~~vk~----------~~l~Ff~a~l~avtr~~n~~~EFRlr~~~~~~~~~d~v~p~~tv~~- 94 (219)
T COG4845 26 LQYPHYDINLQLDVTNFYGYVKE----------NGLSFFPALLYAVTRCANRHQEFRLRIQNGQLGYWDNVPPMYTVFH- 94 (219)
T ss_pred cccceEeeeeeeehhHHHHHHHH----------cCCcchHHHHHHHHHHhcccHHhHhhhcCCeeEEeecCCcceEEEc-
Confidence 46899999999999999887765 2699999999999999999999999999999999999999999999
Q ss_pred CCCCCCccCCcEEEEeecCCCccccccccCChhHHHHHHHHHHhhhhhcCCCCcccCC-CceEEEecCCCCCccceeecc
Q psy14345 206 ESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSD-GGTFTISNGGVFGSLLGTPII 284 (431)
Q Consensus 206 ~~~~~~~~~~gL~vpvi~~a~~~s~~l~~~~~~~i~~~~~~l~~~ar~~g~L~~~~~~-ggTftiSn~G~~G~~~~~pii 284 (431)
+ ++-+.-++.-.-..+ + .++.+....-+++.+++..+.++|=. .--.-+||+.|+..+.+..-+
T Consensus 95 ----~----~~e~Fs~l~~e~~~~--~-----~dF~q~y~~~ie~~~~~~~~~~k~~~~~~~~~~s~lPWlsFtslS~~~ 159 (219)
T COG4845 95 ----G----ETETFSVLWTEYQED--Y-----EDFAQLYIEDIEQYGANNYERAKDPTPCDVYIFSNLPWLSFTSLSHHY 159 (219)
T ss_pred ----C----CCcEEEEEecccccc--H-----HHHHHHHHHHHHHhccCcccccCCCCcceeEEeccccccceeeeeeec
Confidence 6 554556666556667 8 99999988888888844444443222 235688999998877554322
Q ss_pred CCCcceeeeccceeEEEeeeCCeEE---EeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhh
Q psy14345 285 NPPQSAILGMHGTFERPVAIKGQVV---VKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAF 343 (431)
Q Consensus 285 ~ppq~ail~vG~i~~~pv~~~g~~~---~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~ 343 (431)
+ =.++.-.|+..+|+.. -+-.|++++.+.|..+||-....|+..+.++.+.
T Consensus 160 ~--------~~k~~~~PiF~~Grf~~~~Gkl~lPlavq~hHA~vDG~Hi~~l~~~lQ~~~~~ 213 (219)
T COG4845 160 R--------RNKIYGQPIFYAGRFYEEDGKLTLPLAVQAHHANVDGFHIGQLFDQLQTLFSP 213 (219)
T ss_pred c--------CCccccceeEeecceeccCCeEEEeEEEEecccccchhhHHHHHHHHHHHhcC
Confidence 2 1244555777666422 2346999999999999999999999998865443
No 44
>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2.3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....
Probab=95.21 E-value=0.22 Score=47.18 Aligned_cols=99 Identities=18% Similarity=0.217 Sum_probs=71.5
Q ss_pred eeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCC-eeEEcCCcceEE
Q psy14345 312 PMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGT-DIVYRDYVDISV 390 (431)
Q Consensus 312 ~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~-~i~~~~~vnigv 390 (431)
|++.++.. ||.+.+.++.++ .++++...++.++.+|+-++|++.-++.++ ++..++.+|.+.
T Consensus 26 p~~svT~~-----lDvT~l~~~~K~------------~~~~Ff~~~ly~i~ka~N~~~efR~ri~~~g~v~~~d~i~ps~ 88 (206)
T PF00302_consen 26 PYFSVTVN-----LDVTNLYKYAKE------------KGLSFFPAYLYAIMKAANEIPEFRYRIVDDGEVVYYDRIDPSY 88 (206)
T ss_dssp EEEEEEEE-----EE-HHHHHHHHH------------TT--HHHHHHHHHHHHHTTSGGGCEEEETTSCEEEESS-EEEE
T ss_pred ceEeccee-----EEhHHHHHHHHH------------cCCCcHHHHHHHHHHHHhcCHHHheeeeCCCcEEEECCcceee
Confidence 55666666 455665444332 167889999999999999999999999887 999999999999
Q ss_pred EEecC-CCeeeceecCcccCCHHHHHHHHHHHHHHHHcC
Q psy14345 391 AVATP-KGLVVPVIRNVEAMNFADIELTIAALGEKARTG 428 (431)
Q Consensus 391 AV~~~-~GL~vPvi~~a~~~~l~~ia~~~~~l~~~ar~g 428 (431)
.|-.+ ++.+.-+--. -.-++.+..+..++.++++++.
T Consensus 89 Tv~~~~~~tFs~~~~~-y~~df~~F~~~~~~~~~~~~~~ 126 (206)
T PF00302_consen 89 TVFHKDDETFSFCWTE-YDEDFEEFYANYEADIERYKES 126 (206)
T ss_dssp EEEETTTTEEEEEEE----SSHHHHHHHHHHHHHHHTTS
T ss_pred eEEeCCCCeEEEEEec-CCCCHHHHHHHHHHHHHHHhcc
Confidence 99854 5655444222 2448999999999999988764
No 45
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=94.65 E-value=0.41 Score=50.87 Aligned_cols=66 Identities=6% Similarity=-0.027 Sum_probs=40.0
Q ss_pred ccHHHHHHHHHHHHhcccceEEEEee-ecc-chHH----HHHHHHHHHHHHh-hcCCCCChhHHHHHHHHHHHhhC
Q psy14345 110 MNRMRQRIAQRLKEAQNVNAMLTTFN-EID-MSAI----IEFRKAHLEAFQK-KYGLKLGFMSPFIKASAYALQDQ 178 (431)
Q Consensus 110 ls~~Rk~ia~~m~~S~~~iP~~t~~~-evD-~t~l----~~~r~~l~~~~~~-~~g~k~t~~~~~ikA~a~Al~~~ 178 (431)
...+|.++.+.|.+-.+.-|.+.+.. ++- .... ..+++++. .+ -.+..++=.+++.-|+.+|+.-.
T Consensus 141 ~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fg---p~R~id~gIaEq~~vg~AaGlA~~G~ 213 (464)
T PRK11892 141 TMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFG---ARRVIDTPITEHGFAGIGVGAAFAGL 213 (464)
T ss_pred chHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhC---ccceeecCccHHHHHHHHHHHHhCCC
Confidence 34788888888888877777655543 331 1111 23344431 21 12456777888888888888763
No 46
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=94.12 E-value=0.016 Score=40.06 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=19.2
Q ss_pred CCCCC-chhhhcCCCccccCCCCCCC
Q psy14345 71 SSPSP-SLCYSSAIEAATVKLPPADP 95 (431)
Q Consensus 71 ~sp~~-~lA~e~gIdl~~v~gtg~dv 95 (431)
++|++ ++|+|+|||++.++|||.+.
T Consensus 5 asP~ar~la~e~gidl~~v~gtG~~G 30 (39)
T PF02817_consen 5 ASPAARKLAAELGIDLSQVKGTGPGG 30 (39)
T ss_dssp CSHHHHHHHHHTT--GGGSSSSSTTS
T ss_pred cCHHHHHHHHHcCCCcccccccCCCC
Confidence 45666 99999999999999998654
No 47
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=92.10 E-value=0.17 Score=36.69 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=22.9
Q ss_pred cceeeeeecCCCCeEecCceeEEEecC
Q psy14345 11 KKFLLLASLEDGATVKAGQQLFKIKPT 37 (431)
Q Consensus 11 ~~~~l~~~~~eGd~v~VG~~L~~Ie~~ 37 (431)
+-.+-.+++++||.|+.|++|++|+..
T Consensus 10 ~G~V~~v~V~~G~~VkkGd~L~~ld~~ 36 (50)
T PF13533_consen 10 SGRVESVYVKEGQQVKKGDVLLVLDSP 36 (50)
T ss_pred CEEEEEEEecCCCEEcCCCEEEEECcH
Confidence 345667799999999999999999954
No 48
>PRK13757 chloramphenicol acetyltransferase; Provisional
Probab=91.98 E-value=1.6 Score=41.73 Aligned_cols=77 Identities=14% Similarity=0.112 Sum_probs=61.7
Q ss_pred ccCCcchHHHHHHHHhhcCCccceeeeCCeeEEcCCcceEEEEecCC-Ceeece-ecCcccCCHHHHHHHHHHHHHHHHc
Q psy14345 350 KLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPK-GLVVPV-IRNVEAMNFADIELTIAALGEKART 427 (431)
Q Consensus 350 klt~~~~~~ka~~~aL~~~P~~Na~~~~~~i~~~~~vnigvAV~~~~-GL~vPv-i~~a~~~~l~~ia~~~~~l~~~ar~ 427 (431)
++++...++.|+.+|+-++|++.-++.++++..++.+|.+..|-.++ +.+.-+ +.- .-++.+..+...+.++++.+
T Consensus 52 ~~~fy~~~ly~v~kavN~~~eFR~r~~~~~v~~~D~i~ps~Ti~~~~~~tFs~~~~~y--~~df~~F~~~~~~~~~~~~~ 129 (219)
T PRK13757 52 KHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTETFSSLWSEY--HDDFRQFLHIYSQDVACYGE 129 (219)
T ss_pred CCChHHHHHHHHHHHHhcCHhHheEEECCeEEEEeEEeeeEEEEeCCCceEEEEEecC--cCCHHHHHHHHHHHHHHHhc
Confidence 67899999999999999999999999999999999999999999655 455433 333 34566777777777777776
Q ss_pred C
Q psy14345 428 G 428 (431)
Q Consensus 428 g 428 (431)
.
T Consensus 130 ~ 130 (219)
T PRK13757 130 N 130 (219)
T ss_pred C
Confidence 4
No 49
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]
Probab=91.72 E-value=1.1 Score=42.04 Aligned_cols=101 Identities=14% Similarity=0.075 Sum_probs=77.1
Q ss_pred EeeeeeeeeeeeeeeeehHHHHHHHHHHHhHhhhhhhcccccCCcchHHHHHHHHhhcCCccceeeeCCeeEEcCCcceE
Q psy14345 310 VKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDIS 389 (431)
Q Consensus 310 ~~~~m~lslt~DHRvIDg~~a~~fl~~lk~l~~~~~~~~~klt~~~~~~ka~~~aL~~~P~~Na~~~~~~i~~~~~vnig 389 (431)
..|+..+++..|. ..|...+++. +++++..++.|+.+++.+|+++.-++.++...+++.++..
T Consensus 27 ~~p~y~i~~~LDv--------tn~~~~vk~~---------~l~Ff~a~l~avtr~~n~~~EFRlr~~~~~~~~~d~v~p~ 89 (219)
T COG4845 27 QYPHYDINLQLDV--------TNFYGYVKEN---------GLSFFPALLYAVTRCANRHQEFRLRIQNGQLGYWDNVPPM 89 (219)
T ss_pred ccceEeeeeeeeh--------hHHHHHHHHc---------CCcchHHHHHHHHHHhcccHHhHhhhcCCeeEEeecCCcc
Confidence 3455666655442 4566666532 7899999999999999999999999999999999999999
Q ss_pred EEEecCCC-eeeceecCcccCCHHHHHHHHHHHHHHHHcC
Q psy14345 390 VAVATPKG-LVVPVIRNVEAMNFADIELTIAALGEKARTG 428 (431)
Q Consensus 390 vAV~~~~G-L~vPvi~~a~~~~l~~ia~~~~~l~~~ar~g 428 (431)
..|..+++ ++.-+ ----+.+..+.++-...=+++.+++
T Consensus 90 ~tv~~~~~e~Fs~l-~~e~~~~~~dF~q~y~~~ie~~~~~ 128 (219)
T COG4845 90 YTVFHGETETFSVL-WTEYQEDYEDFAQLYIEDIEQYGAN 128 (219)
T ss_pred eEEEcCCCcEEEEE-eccccccHHHHHHHHHHHHHHhccC
Confidence 99999665 44333 2225778888888777777777765
No 50
>PRK06748 hypothetical protein; Validated
Probab=90.73 E-value=0.33 Score=39.32 Aligned_cols=26 Identities=8% Similarity=0.258 Sum_probs=14.9
Q ss_pred ccceeeeeecCCCCeEecCceeEEEe
Q psy14345 10 NKKFLLLASLEDGATVKAGQQLFKIK 35 (431)
Q Consensus 10 ~~~~~l~~~~~eGd~v~VG~~L~~Ie 35 (431)
.+-++..+.+++||+|++|++|++|+
T Consensus 49 ~~G~v~~i~v~~Gd~V~vG~~la~I~ 74 (83)
T PRK06748 49 ISGYIESLEVVEGQAIADQKLLITVR 74 (83)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEE
Confidence 34445555566666666666666664
No 51
>PRK06748 hypothetical protein; Validated
Probab=87.63 E-value=0.71 Score=37.36 Aligned_cols=37 Identities=8% Similarity=-0.097 Sum_probs=27.7
Q ss_pred cccccccccceeeeeecCCCCeEecCceeEEEec-CCC
Q psy14345 3 YNLLKQNNKKFLLLASLEDGATVKAGQQLFKIKP-TAT 39 (431)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~-~~~ 39 (431)
|.-..+-=.--+...++++||.|+.|++|+.||+ ...
T Consensus 4 ~~~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IETMdK~ 41 (83)
T PRK06748 4 IEGVYSPCYGKVEKLFVRESSYVYEWEKLALIETIDKQ 41 (83)
T ss_pred eeEEecCCcEEEEEEEeCCCCEECCCCEEEEEEcCCCc
Confidence 3344444445567779999999999999999997 543
No 52
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=86.60 E-value=0.62 Score=41.39 Aligned_cols=22 Identities=45% Similarity=0.480 Sum_probs=20.2
Q ss_pred eeeeecCCCCeEecCceeEEEe
Q psy14345 14 LLLASLEDGATVKAGQQLFKIK 35 (431)
Q Consensus 14 ~l~~~~~eGd~v~VG~~L~~Ie 35 (431)
++++.|++||+|+.||+||.||
T Consensus 81 v~~~~V~vGd~V~~Gq~l~IiE 102 (140)
T COG0511 81 VYKPFVEVGDTVKAGQTLAIIE 102 (140)
T ss_pred EEEEeeccCCEEcCCCEEEEEE
Confidence 4558999999999999999999
No 53
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=83.87 E-value=1.2 Score=34.75 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=16.9
Q ss_pred cccceeeeeecCCCCeEecCceeEEE
Q psy14345 9 NNKKFLLLASLEDGATVKAGQQLFKI 34 (431)
Q Consensus 9 ~~~~~~l~~~~~eGd~v~VG~~L~~I 34 (431)
..+-++..+.+++||.|.+|++|++|
T Consensus 49 ~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 49 PVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp SSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred CCCEEEEEEEECCCCEECCCCEEEEC
Confidence 34445556677777777777777765
No 54
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=81.73 E-value=1.4 Score=34.45 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=22.3
Q ss_pred eeeeeecCCCCeEecCceeEEEecCCC
Q psy14345 13 FLLLASLEDGATVKAGQQLFKIKPTAT 39 (431)
Q Consensus 13 ~~l~~~~~eGd~v~VG~~L~~Ie~~~~ 39 (431)
.+...++++||.|+.|++||.||+...
T Consensus 16 ~i~~~~v~~G~~V~~G~~l~~iet~K~ 42 (74)
T PF00364_consen 16 TITKWLVEEGDKVKKGDPLAEIETMKM 42 (74)
T ss_dssp EEEEESSSTTEEESTTSEEEEEESSSE
T ss_pred ceeEEEECCCCEEEcCceEEEEEcCcc
Confidence 344459999999999999999996544
No 55
>PRK07051 hypothetical protein; Validated
Probab=80.72 E-value=2.1 Score=34.01 Aligned_cols=29 Identities=31% Similarity=0.398 Sum_probs=18.4
Q ss_pred cccccceeeeeecCCCCeEecCceeEEEe
Q psy14345 7 KQNNKKFLLLASLEDGATVKAGQQLFKIK 35 (431)
Q Consensus 7 ~~~~~~~~l~~~~~eGd~v~VG~~L~~Ie 35 (431)
....+-.+..+.+++||.|..|++|++|+
T Consensus 51 ~a~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 51 EAEAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred eCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 34445555666677777777777777664
No 56
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=80.45 E-value=1.9 Score=33.40 Aligned_cols=27 Identities=15% Similarity=0.311 Sum_probs=22.7
Q ss_pred ceeeeeecCCCCeEecCceeEEEecCC
Q psy14345 12 KFLLLASLEDGATVKAGQQLFKIKPTA 38 (431)
Q Consensus 12 ~~~l~~~~~eGd~v~VG~~L~~Ie~~~ 38 (431)
--+...++++||.|+.|++|+.||.-.
T Consensus 11 G~i~~~~v~~Gd~V~~g~~l~~ve~~K 37 (71)
T PRK05889 11 ASVLEVVVNEGDQIGKGDTLVLLESMK 37 (71)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEEecc
Confidence 345667999999999999999999654
No 57
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=79.48 E-value=44 Score=35.16 Aligned_cols=40 Identities=15% Similarity=-0.007 Sum_probs=30.0
Q ss_pred EEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhC
Q psy14345 132 TTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQ 178 (431)
Q Consensus 132 t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~ 178 (431)
+....++.+.+-++++..++ .++|+|.+|.-+++.||.+.
T Consensus 251 ~~~~~i~~~~~~~ll~~CR~-------~~~TlT~~L~al~~~al~~~ 290 (480)
T PF07247_consen 251 YRSLSISPEELKKLLKACRK-------HGTTLTALLHALIALALSKV 290 (480)
T ss_pred EEEEEECHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHhh
Confidence 34556777777776666442 36999999999999999973
No 58
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=79.40 E-value=2.4 Score=32.56 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=15.0
Q ss_pred eeeeecCCCCeEecCceeEEEe
Q psy14345 14 LLLASLEDGATVKAGQQLFKIK 35 (431)
Q Consensus 14 ~l~~~~~eGd~v~VG~~L~~Ie 35 (431)
+....+++||.|+.|++|+.||
T Consensus 12 i~~~~v~~G~~V~~g~~l~~ve 33 (70)
T PRK08225 12 VWKIVVKVGDTVEEGQDVVILE 33 (70)
T ss_pred EEEEEeCCCCEECCCCEEEEEE
Confidence 4445677777777777777766
No 59
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=78.56 E-value=2.3 Score=32.91 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=22.3
Q ss_pred ccceeeeeecCCCCeEecCceeEEEe
Q psy14345 10 NKKFLLLASLEDGATVKAGQQLFKIK 35 (431)
Q Consensus 10 ~~~~~l~~~~~eGd~v~VG~~L~~Ie 35 (431)
-+-.+..+.+++||.|+.|++|++|+
T Consensus 46 ~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 46 VAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 44567778999999999999999985
No 60
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=77.45 E-value=2.6 Score=32.35 Aligned_cols=20 Identities=25% Similarity=0.516 Sum_probs=17.8
Q ss_pred eeecCCCCeEecCceeEEEe
Q psy14345 16 LASLEDGATVKAGQQLFKIK 35 (431)
Q Consensus 16 ~~~~~eGd~v~VG~~L~~Ie 35 (431)
.+.+++||.|..|++|++||
T Consensus 51 ~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 51 KINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred EEEecCCCEECCCCEEEEEC
Confidence 45789999999999999986
No 61
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=73.03 E-value=3.5 Score=41.28 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=26.9
Q ss_pred cccccc---ceeeeeecCCCCeEecCceeEEEecC
Q psy14345 6 LKQNNK---KFLLLASLEDGATVKAGQQLFKIKPT 37 (431)
Q Consensus 6 ~~~~~~---~~~l~~~~~eGd~v~VG~~L~~Ie~~ 37 (431)
++.-.+ -.+..++|++||.|+.|++|++|+..
T Consensus 16 v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~~ 50 (327)
T TIGR02971 16 VAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDSR 50 (327)
T ss_pred ecCCCCCCCcEEEEEEccCCCEecCCcEEEEecCc
Confidence 344455 78888999999999999999999965
No 62
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=71.73 E-value=5.5 Score=29.39 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=22.7
Q ss_pred ccceeeeeecCCCCeEecCceeEEEecC
Q psy14345 10 NKKFLLLASLEDGATVKAGQQLFKIKPT 37 (431)
Q Consensus 10 ~~~~~l~~~~~eGd~v~VG~~L~~Ie~~ 37 (431)
-+-.+....+++||.|+.|++|++|+..
T Consensus 6 ~~G~v~~~~v~~G~~v~~g~~l~~i~~~ 33 (67)
T cd06850 6 MPGTVVKVLVKEGDKVEAGQPLAVLEAM 33 (67)
T ss_pred ccEEEEEEEeCCCCEECCCCEEEEEEcc
Confidence 3444556789999999999999999853
No 63
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=69.48 E-value=3.5 Score=40.30 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=20.3
Q ss_pred ccccceeeeeecCCCCeEecCceeEEEecC
Q psy14345 8 QNNKKFLLLASLEDGATVKAGQQLFKIKPT 37 (431)
Q Consensus 8 ~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~ 37 (431)
.-.+-++-.++|+|||.|+-|++|++|+.+
T Consensus 6 ~~~~G~V~~i~V~eG~~VkkGq~L~~LD~~ 35 (305)
T PF00529_consen 6 SLVGGIVTEILVKEGQRVKKGQVLARLDPT 35 (305)
T ss_dssp -SS-EEEEEE-S-TTEEE-TTSECEEE--H
T ss_pred CCCCeEEEEEEccCcCEEeCCCEEEEEEee
Confidence 345667888899999999999999999954
No 64
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=67.81 E-value=5.3 Score=31.58 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=20.5
Q ss_pred eeeeecCCCCeEecCceeEEEecCCC
Q psy14345 14 LLLASLEDGATVKAGQQLFKIKPTAT 39 (431)
Q Consensus 14 ~l~~~~~eGd~v~VG~~L~~Ie~~~~ 39 (431)
=+..+++.||.|+.|+||++|=...+
T Consensus 33 Gi~l~~k~Gd~V~~Gd~l~~i~~~~~ 58 (75)
T PF07831_consen 33 GIELHKKVGDRVEKGDPLATIYANDE 58 (75)
T ss_dssp EEEESS-TTSEEBTTSEEEEEEESSS
T ss_pred CeEecCcCcCEECCCCeEEEEEcCCh
Confidence 35568999999999999999985543
No 65
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=65.45 E-value=5.9 Score=39.58 Aligned_cols=31 Identities=23% Similarity=0.392 Sum_probs=26.1
Q ss_pred cccccceeeeeecCCCCeEecCceeEEEecC
Q psy14345 7 KQNNKKFLLLASLEDGATVKAGQQLFKIKPT 37 (431)
Q Consensus 7 ~~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~ 37 (431)
....+-.+..+++++||.|+.|++|++|+..
T Consensus 46 ~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~~ 76 (334)
T TIGR00998 46 SSQVSGSVIEVNVDDTDYVKQGDVLVRLDPT 76 (334)
T ss_pred cccCceEEEEEEeCCCCEEcCCCEEEEECch
Confidence 3455667788899999999999999999954
No 66
>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, active as wax ester synthase, as acyl coenzyme A:diacylglycerol acyltransferase, and as acyl-CoA:monoacylglycerol acyltransferase.
Probab=65.29 E-value=1.5e+02 Score=30.67 Aligned_cols=40 Identities=18% Similarity=0.095 Sum_probs=29.9
Q ss_pred CCChhHHHHHHHHHHHhhCCccceeeeCCeeEecCcccEEEEEeec
Q psy14345 160 KLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRN 205 (431)
Q Consensus 160 k~t~~~~~ikA~a~Al~~~P~~N~~~~~~~i~~~~~v~igvav~~~ 205 (431)
+.|++++++-|++.+|.++ ++.. ++ .....+.+++.|+.|
T Consensus 249 g~T~ndvllaa~~~al~~~--~~~~--~~--~~~~~i~~~~pv~~R 288 (446)
T TIGR02946 249 GVTINDVVLAAVAGALRRY--LEER--GE--LPDDPLVAMVPVSLR 288 (446)
T ss_pred CCCHHHHHHHHHHHHHHHH--HHHc--CC--CCCCceEEEEeeecc
Confidence 6899999999999999886 2221 11 334458889999986
No 67
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=62.90 E-value=7.2 Score=39.06 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=25.6
Q ss_pred cccccceeeeeecCCCCeEecCceeEEEecC
Q psy14345 7 KQNNKKFLLLASLEDGATVKAGQQLFKIKPT 37 (431)
Q Consensus 7 ~~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~ 37 (431)
+.--+-.+..+++++||.|+.|++|++|+..
T Consensus 51 ~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~ 81 (310)
T PRK10559 51 APDVSGLITQVNVHDNQLVKKGQVLFTIDQP 81 (310)
T ss_pred ccCCceEEEEEEeCCcCEEcCCCEEEEECcH
Confidence 3344567788899999999999999999953
No 68
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=61.06 E-value=9.3 Score=28.11 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=24.0
Q ss_pred ccccccceeeeeecCCCCeEecCceeEEE
Q psy14345 6 LKQNNKKFLLLASLEDGATVKAGQQLFKI 34 (431)
Q Consensus 6 ~~~~~~~~~l~~~~~eGd~v~VG~~L~~I 34 (431)
+.+..+-++....+++|+.|+.|++|++|
T Consensus 39 i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 39 VTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred EeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 34556677888899999999999999986
No 69
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=61.06 E-value=8.6 Score=33.77 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=25.2
Q ss_pred ccccceeeeeecCCCCeEecCceeEEEecCC
Q psy14345 8 QNNKKFLLLASLEDGATVKAGQQLFKIKPTA 38 (431)
Q Consensus 8 ~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~~ 38 (431)
..-..-++.+.+++||.|+.|++|+.||.-.
T Consensus 66 Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEamK 96 (130)
T PRK06549 66 SPMPGTILKVLVAVGDQVTENQPLLILEAMK 96 (130)
T ss_pred CCCCEEEEEEEeCCCCEECCCCEEEEEeccC
Confidence 3344567788999999999999999999543
No 70
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=60.54 E-value=7.4 Score=35.24 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.5
Q ss_pred eeecCCCCeEecCceeEEEecC
Q psy14345 16 LASLEDGATVKAGQQLFKIKPT 37 (431)
Q Consensus 16 ~~~~~eGd~v~VG~~L~~Ie~~ 37 (431)
..++++||+|++|++|++++-.
T Consensus 90 ~~~v~~Gd~Vk~Gd~Li~fDl~ 111 (156)
T COG2190 90 ESLVKEGDKVKAGDPLLEFDLD 111 (156)
T ss_pred EEEeeCCCEEccCCEEEEECHH
Confidence 4589999999999999999943
No 71
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=60.04 E-value=8.5 Score=33.40 Aligned_cols=20 Identities=30% Similarity=0.586 Sum_probs=18.1
Q ss_pred eecCCCCeEecCceeEEEec
Q psy14345 17 ASLEDGATVKAGQQLFKIKP 36 (431)
Q Consensus 17 ~~~~eGd~v~VG~~L~~Ie~ 36 (431)
.++++||.|+.|++|++++.
T Consensus 84 ~~v~~Gd~V~~G~~l~~~D~ 103 (121)
T TIGR00830 84 SHVEEGQRVKKGDPLLEFDL 103 (121)
T ss_pred EEecCCCEEcCCCEEEEEcH
Confidence 46899999999999999994
No 72
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=59.36 E-value=9.3 Score=37.69 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=18.9
Q ss_pred ccceeeeeecCCCCeEecCceeEEEecC
Q psy14345 10 NKKFLLLASLEDGATVKAGQQLFKIKPT 37 (431)
Q Consensus 10 ~~~~~l~~~~~eGd~v~VG~~L~~Ie~~ 37 (431)
.+-.+ .+++++||.|+.|++|++|+..
T Consensus 28 ~~G~v-~~~v~~G~~V~kG~~L~~ld~~ 54 (328)
T PF12700_consen 28 VSGRV-SVNVKEGDKVKKGQVLAELDSS 54 (328)
T ss_dssp S-EEE-EE-S-TTSEEETT-EEEEEE-H
T ss_pred CCEEE-EEEeCCcCEECCCCEEEEEECh
Confidence 34455 8899999999999999999944
No 73
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=59.22 E-value=9.2 Score=38.68 Aligned_cols=31 Identities=23% Similarity=0.407 Sum_probs=25.7
Q ss_pred cccccceeeeeecCCCCeEecCceeEEEecC
Q psy14345 7 KQNNKKFLLLASLEDGATVKAGQQLFKIKPT 37 (431)
Q Consensus 7 ~~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~ 37 (431)
+..-+-.+-.+++++||.|+.|++|++|+..
T Consensus 52 ~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~~ 82 (346)
T PRK10476 52 ASEVGGRIVELAVTENQAVKKGDLLFRIDPR 82 (346)
T ss_pred cccCceEEEEEEeCCCCEEcCCCEEEEECcH
Confidence 3444567788899999999999999999954
No 74
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=59.02 E-value=12 Score=28.52 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=21.3
Q ss_pred eeeeecCCCCeEecCceeEEEecCCC
Q psy14345 14 LLLASLEDGATVKAGQQLFKIKPTAT 39 (431)
Q Consensus 14 ~l~~~~~eGd~v~VG~~L~~Ie~~~~ 39 (431)
++...+++||.|+.|++|+.||....
T Consensus 16 ~~~~~v~~G~~v~~g~~l~~ie~~k~ 41 (73)
T cd06663 16 VVKWLKKVGDKVKKGDVLAEIEAMKA 41 (73)
T ss_pred EEEEEcCCcCEECCCCEEEEEEeCCe
Confidence 33368999999999999999996543
No 75
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=58.59 E-value=9.1 Score=35.15 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=18.9
Q ss_pred eeecCCCCeEecCceeEEEecC
Q psy14345 16 LASLEDGATVKAGQQLFKIKPT 37 (431)
Q Consensus 16 ~~~~~eGd~v~VG~~L~~Ie~~ 37 (431)
..++++||.|+.|++|++++-.
T Consensus 105 ~~~Vk~Gd~Vk~G~~L~~~D~~ 126 (169)
T PRK09439 105 KRIAEEGQRVKVGDPIIEFDLP 126 (169)
T ss_pred EEEecCCCEEeCCCEEEEEcHH
Confidence 3468999999999999999943
No 76
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=57.95 E-value=8.5 Score=33.89 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=15.7
Q ss_pred eeecCCCCeEecCceeEEEec
Q psy14345 16 LASLEDGATVKAGQQLFKIKP 36 (431)
Q Consensus 16 ~~~~~eGd~v~VG~~L~~Ie~ 36 (431)
..++++||.|+.|++|++++.
T Consensus 87 ~~~v~~G~~V~~G~~L~~~D~ 107 (132)
T PF00358_consen 87 ETLVKEGDKVKAGQPLIEFDL 107 (132)
T ss_dssp EESS-TTSEE-TTEEEEEE-H
T ss_pred EEEEeCCCEEECCCEEEEEcH
Confidence 347899999999999999993
No 77
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=57.82 E-value=9.7 Score=33.18 Aligned_cols=20 Identities=30% Similarity=0.617 Sum_probs=17.8
Q ss_pred eecCCCCeEecCceeEEEec
Q psy14345 17 ASLEDGATVKAGQQLFKIKP 36 (431)
Q Consensus 17 ~~~~eGd~v~VG~~L~~Ie~ 36 (431)
.++++||.|+.|++|++++.
T Consensus 84 ~~vk~Gd~V~~G~~l~~~D~ 103 (124)
T cd00210 84 SHVEEGQRVKQGDKLLEFDL 103 (124)
T ss_pred EEecCCCEEcCCCEEEEEcH
Confidence 35789999999999999994
No 78
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=57.27 E-value=9.6 Score=39.73 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=27.7
Q ss_pred ccccccceeeeeecCCCCeEecCceeEEEecC
Q psy14345 6 LKQNNKKFLLLASLEDGATVKAGQQLFKIKPT 37 (431)
Q Consensus 6 ~~~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~ 37 (431)
+....+-.+..+.|++||.|+.|++|++|+..
T Consensus 61 v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~~ 92 (421)
T TIGR03794 61 IQSPGSGVVIDLDVEVGDQVKKGQVVARLFQP 92 (421)
T ss_pred EECCCCeEEEEEECCCcCEECCCCEEEEECcH
Confidence 45566778888999999999999999999954
No 79
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=56.10 E-value=11 Score=37.80 Aligned_cols=32 Identities=28% Similarity=0.301 Sum_probs=26.3
Q ss_pred ccccccceeeeeecCCCCeEecCceeEEEecC
Q psy14345 6 LKQNNKKFLLLASLEDGATVKAGQQLFKIKPT 37 (431)
Q Consensus 6 ~~~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~ 37 (431)
++..-+-.+..+++++||.|+.|++|++|+..
T Consensus 46 v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~~ 77 (331)
T PRK03598 46 LGFRVGGRLASLAVDEGDAVKAGQVLGELDAA 77 (331)
T ss_pred eecccCcEEEEEEcCCCCEEcCCCEEEEEChH
Confidence 34455667778899999999999999999843
No 80
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=55.96 E-value=11 Score=39.89 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=27.0
Q ss_pred ccccccceeeeeecCCCCeEecCceeEEEecC
Q psy14345 6 LKQNNKKFLLLASLEDGATVKAGQQLFKIKPT 37 (431)
Q Consensus 6 ~~~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~ 37 (431)
+..-+.-.+..++|+|||.|+.|++|++|+.+
T Consensus 62 vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~~ 93 (457)
T TIGR01000 62 IQSTSNNAIKENYLKENKFVKKGDLLVVYDNG 93 (457)
T ss_pred EEcCCCcEEEEEEcCCCCEecCCCEEEEECch
Confidence 44556677888899999999999999999954
No 81
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=55.42 E-value=12 Score=33.77 Aligned_cols=27 Identities=26% Similarity=0.381 Sum_probs=23.0
Q ss_pred ceeeeeecCCCCeEecCceeEEEecCC
Q psy14345 12 KFLLLASLEDGATVKAGQQLFKIKPTA 38 (431)
Q Consensus 12 ~~~l~~~~~eGd~v~VG~~L~~Ie~~~ 38 (431)
--++...+++||.|+.|++|+.||...
T Consensus 93 G~I~~~~V~~Gd~V~~Gq~l~~iEamK 119 (153)
T PRK05641 93 GKILRILVREGQQVKVGQGLLILEAMK 119 (153)
T ss_pred eEEEEEEeCCCCEEcCCCEEEEEeecc
Confidence 346677999999999999999999554
No 82
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=53.47 E-value=13 Score=38.60 Aligned_cols=30 Identities=23% Similarity=0.581 Sum_probs=25.1
Q ss_pred ccccceeeeeecCCCCeEecCceeEEEecC
Q psy14345 8 QNNKKFLLLASLEDGATVKAGQQLFKIKPT 37 (431)
Q Consensus 8 ~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~ 37 (431)
..-+-.+..+++++||.|+.|++|++|+..
T Consensus 70 a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~ 99 (397)
T PRK15030 70 PQVSGIILKRNFKEGSDIEAGVSLYQIDPA 99 (397)
T ss_pred ecCcEEEEEEEcCCCCEecCCCEEEEECCH
Confidence 344567778899999999999999999943
No 83
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=52.21 E-value=14 Score=38.72 Aligned_cols=32 Identities=28% Similarity=0.483 Sum_probs=26.6
Q ss_pred ccccccceeeeeecCCCCeEecCceeEEEecC
Q psy14345 6 LKQNNKKFLLLASLEDGATVKAGQQLFKIKPT 37 (431)
Q Consensus 6 ~~~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~ 37 (431)
+...-+-.+..+++++||.|+-|++|++|+..
T Consensus 90 v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~ 121 (415)
T PRK11556 90 VRSRVDGQLMALHFQEGQQVKAGDLLAEIDPR 121 (415)
T ss_pred EEccccEEEEEEECCCCCEecCCCEEEEECcH
Confidence 44555667888899999999999999999943
No 84
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=51.49 E-value=14 Score=37.98 Aligned_cols=31 Identities=19% Similarity=0.506 Sum_probs=25.4
Q ss_pred cccccceeeeeecCCCCeEecCceeEEEecC
Q psy14345 7 KQNNKKFLLLASLEDGATVKAGQQLFKIKPT 37 (431)
Q Consensus 7 ~~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~ 37 (431)
...-+-.+..+++++||.|+.|++|++|+..
T Consensus 65 ~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~ 95 (385)
T PRK09859 65 RPQVGGIIIKRNFIEGDKVNQGDSLYQIDPA 95 (385)
T ss_pred eccCcEEEEEEEcCCcCEecCCCEEEEECcH
Confidence 3344566778899999999999999999943
No 85
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=51.24 E-value=11 Score=33.97 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=19.2
Q ss_pred ecCCCCeEecCceeEEEecCCC
Q psy14345 18 SLEDGATVKAGQQLFKIKPTAT 39 (431)
Q Consensus 18 ~~~eGd~v~VG~~L~~Ie~~~~ 39 (431)
++++||+|+.|++||.||.-..
T Consensus 102 ~v~~Gd~V~~Gq~l~iiEamK~ 123 (156)
T TIGR00531 102 FVEVGDKVKKGQIVCIVEAMKL 123 (156)
T ss_pred cccCCCEeCCCCEEEEEEeccc
Confidence 6899999999999999995443
No 86
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=51.07 E-value=15 Score=38.15 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=23.7
Q ss_pred ccceeeeeecCCCCeEecCceeEEEecC
Q psy14345 10 NKKFLLLASLEDGATVKAGQQLFKIKPT 37 (431)
Q Consensus 10 ~~~~~l~~~~~eGd~v~VG~~L~~Ie~~ 37 (431)
-+-.+..++|++||.|+-|++|++|+..
T Consensus 68 v~G~V~~v~V~~Gd~VkkGqvL~~LD~~ 95 (390)
T PRK15136 68 VSGSVTKVWADNTDFVKEGDVLVTLDPT 95 (390)
T ss_pred CCeEEEEEEcCCCCEECCCCEEEEECcH
Confidence 3456677799999999999999999954
No 87
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=50.06 E-value=24 Score=25.50 Aligned_cols=31 Identities=13% Similarity=0.254 Sum_probs=25.1
Q ss_pred ccccceeeeeecCCCCeEecCceeEEEecCC
Q psy14345 8 QNNKKFLLLASLEDGATVKAGQQLFKIKPTA 38 (431)
Q Consensus 8 ~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~~ 38 (431)
++....++..++++|+++..|++|+.++...
T Consensus 11 ~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~ 41 (74)
T cd06849 11 SMTEGTIVEWLVKEGDSVEEGDVLAEVETDK 41 (74)
T ss_pred CCcEEEEEEEEECCCCEEcCCCEEEEEEeCC
Confidence 4455567778999999999999999997543
No 88
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=49.14 E-value=16 Score=35.78 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=26.8
Q ss_pred ccccccceeeeeecCCCCeEecCceeEEEecC
Q psy14345 6 LKQNNKKFLLLASLEDGATVKAGQQLFKIKPT 37 (431)
Q Consensus 6 ~~~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~ 37 (431)
+..+..-.+-.+++++||.|+.|++|++++..
T Consensus 69 v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~~ 100 (372)
T COG0845 69 VLARVAGIVAEILVKEGDRVKKGQLLARLDPS 100 (372)
T ss_pred EecccccEEEEEEccCCCeecCCCEEEEECCc
Confidence 33446677888899999999999999999963
No 89
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=48.75 E-value=18 Score=36.03 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=13.8
Q ss_pred eeeecCCCCeEecCceeEEEe
Q psy14345 15 LLASLEDGATVKAGQQLFKIK 35 (431)
Q Consensus 15 l~~~~~eGd~v~VG~~L~~Ie 35 (431)
....+++||.|+.|++|+.||
T Consensus 20 ~~~~~~~g~~v~~~~~~~~~e 40 (371)
T PRK14875 20 AGWLVQEGDEVEKGDELLDVE 40 (371)
T ss_pred EEEEcCCCCEeCCCCEEEEEE
Confidence 334667777777777777766
No 90
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=48.67 E-value=17 Score=35.69 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=23.7
Q ss_pred cccceeeeeecCCCCeEecCceeEEEecC
Q psy14345 9 NNKKFLLLASLEDGATVKAGQQLFKIKPT 37 (431)
Q Consensus 9 ~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~ 37 (431)
.-+-++-.+.+++||+|+.|++|++|+..
T Consensus 32 ~~~G~V~~i~v~~G~~V~kG~~L~~l~~~ 60 (322)
T TIGR01730 32 EVAGKITKISVREGQKVKKGQVLARLDDD 60 (322)
T ss_pred cccEEEEEEEcCCCCEEcCCCEEEEECCH
Confidence 34456667799999999999999999843
No 91
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=47.98 E-value=18 Score=36.98 Aligned_cols=31 Identities=29% Similarity=0.195 Sum_probs=25.5
Q ss_pred ccccccceeeeeecCCCCeEecCceeEEEec
Q psy14345 6 LKQNNKKFLLLASLEDGATVKAGQQLFKIKP 36 (431)
Q Consensus 6 ~~~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~ 36 (431)
+...-+-++..+++++||.|+.|++|++|+.
T Consensus 64 l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~ 94 (370)
T PRK11578 64 VGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 94 (370)
T ss_pred EecccceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 3444556777789999999999999999984
No 92
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=45.85 E-value=19 Score=37.01 Aligned_cols=28 Identities=32% Similarity=0.570 Sum_probs=23.4
Q ss_pred ccceeeeeecCCCCeEecCceeEEEecC
Q psy14345 10 NKKFLLLASLEDGATVKAGQQLFKIKPT 37 (431)
Q Consensus 10 ~~~~~l~~~~~eGd~v~VG~~L~~Ie~~ 37 (431)
-+-.+..+++++||.|+-|++|++|+..
T Consensus 70 v~G~V~~v~v~~Gd~VkkGq~La~ld~~ 97 (385)
T PRK09578 70 VAGIVTARTYEEGQEVKQGAVLFRIDPA 97 (385)
T ss_pred CcEEEEEEECCCCCEEcCCCEEEEECCH
Confidence 3445667799999999999999999844
No 93
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=45.40 E-value=19 Score=35.94 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=19.6
Q ss_pred eeecCCCCeEecCceeEEEecC
Q psy14345 16 LASLEDGATVKAGQQLFKIKPT 37 (431)
Q Consensus 16 ~~~~~eGd~v~VG~~L~~Ie~~ 37 (431)
.+.+++||+|++|++|++|+..
T Consensus 58 ~~~~~~g~~v~~g~~l~~i~~~ 79 (371)
T PRK14875 58 RQVAQEGETLPVGALLAVVADA 79 (371)
T ss_pred EEEcCCCCEeCCCCEEEEEecC
Confidence 4689999999999999999854
No 94
>PRK07051 hypothetical protein; Validated
Probab=45.31 E-value=22 Score=28.07 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=19.7
Q ss_pred eecCCCCeEecCceeEEEecCC
Q psy14345 17 ASLEDGATVKAGQQLFKIKPTA 38 (431)
Q Consensus 17 ~~~~eGd~v~VG~~L~~Ie~~~ 38 (431)
..+++||.|+.|++|++++...
T Consensus 24 ~~v~~Gd~V~~g~~l~~ve~~k 45 (80)
T PRK07051 24 PYVEVGDAVAAGDVVGLIEVMK 45 (80)
T ss_pred CccCCCCEECCCCEEEEEEEcc
Confidence 5899999999999999999653
No 95
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=45.05 E-value=21 Score=36.66 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=27.0
Q ss_pred ccccccceeeeeecCCCCeEecCceeEEEecC
Q psy14345 6 LKQNNKKFLLLASLEDGATVKAGQQLFKIKPT 37 (431)
Q Consensus 6 ~~~~~~~~~l~~~~~eGd~v~VG~~L~~Ie~~ 37 (431)
+....+-.+..++|++||.|+.|++|++++..
T Consensus 46 v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~~ 77 (423)
T TIGR01843 46 VQHLEGGIVREILVREGDRVKAGQVLVELDAT 77 (423)
T ss_pred cccCCCcEEEEEEeCCCCEecCCCeEEEEccc
Confidence 34556677888999999999999999999954
No 96
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=44.94 E-value=14 Score=36.20 Aligned_cols=20 Identities=45% Similarity=0.611 Sum_probs=17.0
Q ss_pred eeecCCCCeEecCceeEEEe
Q psy14345 16 LASLEDGATVKAGQQLFKIK 35 (431)
Q Consensus 16 ~~~~~eGd~v~VG~~L~~Ie 35 (431)
+-.|+|||+|+.||+||.=-
T Consensus 42 km~VkeGD~Vk~Gq~LF~dK 61 (257)
T PF05896_consen 42 KMLVKEGDRVKAGQPLFEDK 61 (257)
T ss_pred cEEeccCCEEeCCCeeEeeC
Confidence 44799999999999999743
No 97
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=42.99 E-value=18 Score=35.65 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.3
Q ss_pred eecCCCCeEecCceeEEEecCCC
Q psy14345 17 ASLEDGATVKAGQQLFKIKPTAT 39 (431)
Q Consensus 17 ~~~~eGd~v~VG~~L~~Ie~~~~ 39 (431)
.++++||.|+.|++|+.||....
T Consensus 218 w~VkvGDsVkkGQvLavIEAMKm 240 (274)
T PLN02983 218 PFVKVGDKVQKGQVVCIIEAMKL 240 (274)
T ss_pred ceeCCCCEecCCCEEEEEEeece
Confidence 48999999999999999996554
No 98
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=42.95 E-value=15 Score=30.68 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=17.8
Q ss_pred eecCCCCeEecCceeEEEec
Q psy14345 17 ASLEDGATVKAGQQLFKIKP 36 (431)
Q Consensus 17 ~~~~eGd~v~VG~~L~~Ie~ 36 (431)
..|++||.|+.||.|++.+.
T Consensus 44 p~V~~Gd~V~~GQ~Ia~~~~ 63 (101)
T PF13375_consen 44 PVVKVGDKVKKGQLIAEAEG 63 (101)
T ss_pred EEEcCCCEEcCCCEEEecCC
Confidence 46899999999999999873
No 99
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=42.79 E-value=19 Score=32.49 Aligned_cols=22 Identities=41% Similarity=0.456 Sum_probs=19.3
Q ss_pred ecCCCCeEecCceeEEEecCCC
Q psy14345 18 SLEDGATVKAGQQLFKIKPTAT 39 (431)
Q Consensus 18 ~~~eGd~v~VG~~L~~Ie~~~~ 39 (431)
.+++||.|+.|++||.||.-..
T Consensus 101 ~v~~Gd~V~~Gq~l~~iEamK~ 122 (155)
T PRK06302 101 FVEVGDTVKEGQTLCIIEAMKV 122 (155)
T ss_pred ccCCCCEeCCCCEEEEEEeccc
Confidence 5899999999999999996543
No 100
>PRK09294 acyltransferase PapA5; Provisional
Probab=41.39 E-value=1.8e+02 Score=29.89 Aligned_cols=100 Identities=13% Similarity=-0.045 Sum_probs=53.5
Q ss_pred CCChhHHHHHHHHHHHhhCCccceeeeCCeeEecCcccEEEEEeecC---CCCCCccCCcEEEE----eecCCCcccccc
Q psy14345 160 KLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNE---SNLPRWCFNGLLSG----VLVLTEHLNGKY 232 (431)
Q Consensus 160 k~t~~~~~ikA~a~Al~~~P~~N~~~~~~~i~~~~~v~igvav~~~~---~~~~~~~~~gL~vp----vi~~a~~~s~~l 232 (431)
++|++.++.-|++.++.+.- +.. ...+.+++.|+.|. +.++ .+.-+-++. .+.-....+ +
T Consensus 229 ~~t~~~~l~Aa~~~~l~r~~-------~~~---~~~i~~~~pv~~R~~l~p~~~-~~~~~n~~g~~~~~~~~~~~~s--f 295 (416)
T PRK09294 229 RLTVNALVSAAILLAEWQLR-------RTP---HVPLPYVYPVDLRFRLTPPVA-ATEGTNLLGAATYLAEIGPDTD--I 295 (416)
T ss_pred CCcHHHHHHHHHHHHHHHhc-------CCC---CCceeeecchhhHhhcCCCCC-cccceeeEeeeeeeccccCCCC--H
Confidence 58999999999998887641 110 12233455566541 0111 000111111 122223346 8
Q ss_pred ccCChhHHHHHHHHHHhhhhhcCCCCc--ccC----CC------ceEEEecCCCCCc
Q psy14345 233 CVSSRPSYERHTTGWACYDRLNWNLAI--EDS----DG------GTFTISNGGVFGS 277 (431)
Q Consensus 233 ~~~~~~~i~~~~~~l~~~ar~~g~L~~--~~~----~g------gTftiSn~G~~G~ 277 (431)
.++++++++-.......+.+.. .++ .| .++++||+|.++.
T Consensus 296 -----~ela~~v~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~v~~Snlg~~~~ 347 (416)
T PRK09294 296 -----VDLARAIAATLRADLADGVIQQSFLHFGTAFEGTPPGLPPVVFITNLGVAPP 347 (416)
T ss_pred -----HHHHHHHHHHHhhhhhcceeeehhhcccccccCCCCCCCCeEEEecCCcCCC
Confidence 9999999877765542332211 011 11 3799999999965
No 101
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=36.00 E-value=34 Score=35.69 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=22.8
Q ss_pred ccceeeeee-cCCCCeEecCceeEEEec
Q psy14345 10 NKKFLLLAS-LEDGATVKAGQQLFKIKP 36 (431)
Q Consensus 10 ~~~~~l~~~-~~eGd~v~VG~~L~~Ie~ 36 (431)
-+-++-.++ +++||.|+.|++|++|+.
T Consensus 130 v~G~V~~l~~~~~Gd~VkkGq~La~l~s 157 (409)
T PRK09783 130 AAGFIDKVYPLTVGDKVQKGTPLLDLTI 157 (409)
T ss_pred cCEEEEEEEecCCCCEECCCCEEEEEeC
Confidence 345677777 999999999999999983
No 102
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=35.50 E-value=32 Score=37.92 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=22.9
Q ss_pred eeeeeecCCCCeEecCceeEEEecCCC
Q psy14345 13 FLLLASLEDGATVKAGQQLFKIKPTAT 39 (431)
Q Consensus 13 ~~l~~~~~eGd~v~VG~~L~~Ie~~~~ 39 (431)
-+..+.|++||.|+.|++|+.||.-..
T Consensus 535 ~V~~~~V~~Gd~V~~Gq~L~~iEamKm 561 (596)
T PRK14042 535 SIIAIHVSAGDEVKAGQAVLVIEAMKM 561 (596)
T ss_pred EEEEEEeCCCCEeCCCCEEEEEEecce
Confidence 366779999999999999999995543
No 103
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=32.31 E-value=38 Score=37.20 Aligned_cols=27 Identities=19% Similarity=0.407 Sum_probs=23.0
Q ss_pred eeeeecCCCCeEecCceeEEEecCCCC
Q psy14345 14 LLLASLEDGATVKAGQQLFKIKPTATS 40 (431)
Q Consensus 14 ~l~~~~~eGd~v~VG~~L~~Ie~~~~~ 40 (431)
+..+.|++||.|+.|++|+.||.-..+
T Consensus 528 v~~~~V~~Gd~V~~G~~l~~iEamKme 554 (582)
T TIGR01108 528 IVKVKVSEGQTVAEGEVLLILEAMKME 554 (582)
T ss_pred EEEEEeCCCCEECCCCEEEEEEeccce
Confidence 566799999999999999999965543
No 104
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=31.67 E-value=41 Score=27.07 Aligned_cols=21 Identities=24% Similarity=0.465 Sum_probs=16.8
Q ss_pred eeeecCCCCeEecCceeEEEe
Q psy14345 15 LLASLEDGATVKAGQQLFKIK 35 (431)
Q Consensus 15 l~~~~~eGd~v~VG~~L~~Ie 35 (431)
...++++|+.|.-|++|++++
T Consensus 47 v~~~~~dG~~v~~g~~i~~i~ 67 (88)
T PF02749_consen 47 VEWLVKDGDRVEPGDVILEIE 67 (88)
T ss_dssp EEESS-TT-EEETTCEEEEEE
T ss_pred EEEEeCCCCCccCCcEEEEEE
Confidence 345889999999999999998
No 105
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=29.20 E-value=40 Score=37.23 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=19.1
Q ss_pred eeecCCCCeEecCceeEEEecC
Q psy14345 16 LASLEDGATVKAGQQLFKIKPT 37 (431)
Q Consensus 16 ~~~~~eGd~v~VG~~L~~Ie~~ 37 (431)
+.++++||+|+.|++|++++..
T Consensus 547 ~~~v~~g~~V~~G~~l~~~d~~ 568 (610)
T TIGR01995 547 EILVKVGDHVKAGQLLLTFDLD 568 (610)
T ss_pred EEEecCcCEEcCCCEEEEecHH
Confidence 3468999999999999999943
No 106
>PRK00624 glycine cleavage system protein H; Provisional
Probab=28.88 E-value=49 Score=28.38 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=17.6
Q ss_pred CCCCeEecCceeEEEecCCC
Q psy14345 20 EDGATVKAGQQLFKIKPTAT 39 (431)
Q Consensus 20 ~eGd~v~VG~~L~~Ie~~~~ 39 (431)
+.|++|+.|++|+.||....
T Consensus 41 ~~G~~V~~g~~i~~IEs~K~ 60 (114)
T PRK00624 41 SVGSFCKEGEVLVILESSKS 60 (114)
T ss_pred CCCCEEeCCCEEEEEEeccE
Confidence 67999999999999996654
No 107
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=28.05 E-value=72 Score=26.00 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=18.5
Q ss_pred ecCCCCeEecCceeEEEecCCC
Q psy14345 18 SLEDGATVKAGQQLFKIKPTAT 39 (431)
Q Consensus 18 ~~~eGd~v~VG~~L~~Ie~~~~ 39 (431)
..++|+.|+.|++|+.||..+.
T Consensus 36 ~~~~G~~v~~g~~l~~iEs~k~ 57 (96)
T cd06848 36 LPEVGTEVKKGDPFGSVESVKA 57 (96)
T ss_pred ecCCCCEEeCCCEEEEEEEccE
Confidence 4566999999999999996654
No 108
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=27.96 E-value=65 Score=24.37 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=19.8
Q ss_pred cceeeeeecCCCCeEecCceeEEE
Q psy14345 11 KKFLLLASLEDGATVKAGQQLFKI 34 (431)
Q Consensus 11 ~~~~l~~~~~eGd~v~VG~~L~~I 34 (431)
+-.+..+.+++|+.+..|++|++|
T Consensus 50 ~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 50 SGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEC
Confidence 445666789999999999999986
No 109
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=27.51 E-value=51 Score=28.04 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=18.1
Q ss_pred cCCCCeEecCceeEEEecCCC
Q psy14345 19 LEDGATVKAGQQLFKIKPTAT 39 (431)
Q Consensus 19 ~~eGd~v~VG~~L~~Ie~~~~ 39 (431)
-++|++|+.|++|+.||....
T Consensus 38 p~~G~~V~~g~~i~~IEs~K~ 58 (110)
T TIGR03077 38 PSVGSSCKEGEVLVILESSKS 58 (110)
T ss_pred CCCCCEEcCCCEEEEEEeccE
Confidence 467999999999999996654
No 110
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=26.96 E-value=46 Score=36.92 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=18.9
Q ss_pred eeecCCCCeEecCceeEEEecC
Q psy14345 16 LASLEDGATVKAGQQLFKIKPT 37 (431)
Q Consensus 16 ~~~~~eGd~v~VG~~L~~Ie~~ 37 (431)
..++++||+|+.|++|++++.+
T Consensus 563 ~~~v~~Gd~V~~G~~l~~~D~~ 584 (627)
T PRK09824 563 TAHVNVGDKVNTGDLLIEFDIP 584 (627)
T ss_pred eEEecCCCEEcCCCEEEEEcHH
Confidence 3468899999999999999943
No 111
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=24.05 E-value=45 Score=35.42 Aligned_cols=21 Identities=43% Similarity=0.545 Sum_probs=18.1
Q ss_pred eeecCCCCeEecCceeEEEec
Q psy14345 16 LASLEDGATVKAGQQLFKIKP 36 (431)
Q Consensus 16 ~~~~~eGd~v~VG~~L~~Ie~ 36 (431)
+..|++||+|+.||+|+.-+.
T Consensus 42 k~~Vk~GD~V~~Gq~I~~~~~ 62 (447)
T TIGR01936 42 KMKVRPGDKVKAGQPLFEDKK 62 (447)
T ss_pred ceEeCcCCEEcCCCEeEecCC
Confidence 347999999999999998773
No 112
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=23.71 E-value=67 Score=35.42 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=22.4
Q ss_pred eeeeeecCCCCeEecCceeEEEecCC
Q psy14345 13 FLLLASLEDGATVKAGQQLFKIKPTA 38 (431)
Q Consensus 13 ~~l~~~~~eGd~v~VG~~L~~Ie~~~ 38 (431)
-+..+.+++||.|+.|++|+.||.-.
T Consensus 534 ~I~~~~V~~Gd~V~~Gd~l~~iEamK 559 (593)
T PRK14040 534 NIFKVIVTEGQTVAEGDVLLILEAMK 559 (593)
T ss_pred EEEEEEeCCCCEeCCCCEEEEEecCc
Confidence 46677999999999999999999544
No 113
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=23.30 E-value=60 Score=36.16 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=18.4
Q ss_pred eecCCCCeEecCceeEEEecC
Q psy14345 17 ASLEDGATVKAGQQLFKIKPT 37 (431)
Q Consensus 17 ~~~~eGd~v~VG~~L~~Ie~~ 37 (431)
.+|++||+|+.||+|++++..
T Consensus 584 ~~Vk~Gd~V~~G~~l~~~D~~ 604 (648)
T PRK10255 584 RLVEEGAQVSAGQPILEMDLD 604 (648)
T ss_pred EEecCCCEEcCCCEEEEEcHH
Confidence 358999999999999999943
No 114
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=23.07 E-value=2.4e+02 Score=20.35 Aligned_cols=48 Identities=8% Similarity=0.043 Sum_probs=34.4
Q ss_pred ccceEEEEeeeccchHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHhhCCccc
Q psy14345 126 NVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVN 182 (431)
Q Consensus 126 ~~iP~~t~~~evD~t~l~~~r~~l~~~~~~~~g~k~t~~~~~ikA~a~Al~~~P~~N 182 (431)
++.|+|++-..-++-..++.+.+. ..-|++.-++.++..+|++...++
T Consensus 2 r~~~~f~lRlP~~l~~~lk~~A~~---------~gRS~NsEIv~~L~~~l~~e~~i~ 49 (50)
T PF03869_consen 2 RKDPQFNLRLPEELKEKLKERAEE---------NGRSMNSEIVQRLEEALKKEGRIQ 49 (50)
T ss_dssp CCSEEEEEECEHHHHHHHHHHHHH---------TTS-HHHHHHHHHHHHHHHCTSSC
T ss_pred CCCCceeeECCHHHHHHHHHHHHH---------hCCChHHHHHHHHHHHHhccccCC
Confidence 467888888777665555544432 246999999999999999887665
No 115
>PF14821 Thr_synth_N: Threonine synthase N terminus; PDB: 3V7N_A 1VB3_A 1KL7_A.
Probab=22.90 E-value=85 Score=24.84 Aligned_cols=27 Identities=30% Similarity=0.586 Sum_probs=15.5
Q ss_pred ecCCCeeece-ec--------CcccCCHHHHHHHHH
Q psy14345 393 ATPKGLVVPV-IR--------NVEAMNFADIELTIA 419 (431)
Q Consensus 393 ~~~~GL~vPv-i~--------~a~~~~l~~ia~~~~ 419 (431)
+.++||+||. |. +..++|..|||.++-
T Consensus 23 A~DGGLyvP~~iP~l~~~~l~~l~~~sy~elA~~il 58 (79)
T PF14821_consen 23 APDGGLYVPEEIPKLSKEELEELKNLSYAELAFEIL 58 (79)
T ss_dssp BTTSB-EEESS-----HHHHHHHTTS-HHHHHHHHH
T ss_pred CCCCeeEecCcCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 4578999997 32 334667777776654
No 116
>PF13437 HlyD_3: HlyD family secretion protein
Probab=21.08 E-value=1.2e+02 Score=24.56 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=22.4
Q ss_pred cceeeeeecCCCCeEecCceeEEEecC
Q psy14345 11 KKFLLLASLEDGATVKAGQQLFKIKPT 37 (431)
Q Consensus 11 ~~~~l~~~~~eGd~v~VG~~L~~Ie~~ 37 (431)
+-.+....+++|+.|..|++|+.|...
T Consensus 7 ~G~V~~~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 7 DGVVVSINVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred CEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence 345566678999999999999999965
No 117
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=21.01 E-value=57 Score=34.65 Aligned_cols=19 Identities=42% Similarity=0.674 Sum_probs=16.8
Q ss_pred eecCCCCeEecCceeEEEe
Q psy14345 17 ASLEDGATVKAGQQLFKIK 35 (431)
Q Consensus 17 ~~~~eGd~v~VG~~L~~Ie 35 (431)
..|++||+|++||+|+.-.
T Consensus 44 ~~V~~GD~V~~Gq~I~~~~ 62 (448)
T PRK05352 44 MKVKEGDKVKKGQPLFEDK 62 (448)
T ss_pred eEeCcCCEEcCCCEeEecC
Confidence 4689999999999999765
No 118
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=20.90 E-value=86 Score=32.26 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=23.0
Q ss_pred cceeeeeecCCCCeEecCceeEEEecC
Q psy14345 11 KKFLLLASLEDGATVKAGQQLFKIKPT 37 (431)
Q Consensus 11 ~~~~l~~~~~eGd~v~VG~~L~~Ie~~ 37 (431)
|-++-...|++.+.|+.|++|++|++.
T Consensus 61 sG~V~eV~V~dnq~Vk~Gd~L~~iD~~ 87 (352)
T COG1566 61 SGRVTEVNVKDNQLVKKGDVLFRIDPR 87 (352)
T ss_pred ceEEEEEEecCCCEecCCCeEEEECcH
Confidence 445666799999999999999999954
No 119
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=20.48 E-value=85 Score=34.60 Aligned_cols=27 Identities=19% Similarity=0.407 Sum_probs=22.8
Q ss_pred eeeeeecCCCCeEecCceeEEEecCCC
Q psy14345 13 FLLLASLEDGATVKAGQQLFKIKPTAT 39 (431)
Q Consensus 13 ~~l~~~~~eGd~v~VG~~L~~Ie~~~~ 39 (431)
.+..+.+++||+|+.|++|++|+....
T Consensus 532 ~v~~~~V~~Gd~V~~Gq~L~~ieamKm 558 (592)
T PRK09282 532 TVVKVKVKEGDKVKAGDTVLVLEAMKM 558 (592)
T ss_pred EEEEEEeCCCCEECCCCEEEEEecccc
Confidence 456779999999999999999996543
No 120
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=20.24 E-value=83 Score=37.50 Aligned_cols=27 Identities=15% Similarity=0.357 Sum_probs=23.0
Q ss_pred eeeeeecCCCCeEecCceeEEEecCCC
Q psy14345 13 FLLLASLEDGATVKAGQQLFKIKPTAT 39 (431)
Q Consensus 13 ~~l~~~~~eGd~v~VG~~L~~Ie~~~~ 39 (431)
-+..+.+++||.|+.|++|+.||.-..
T Consensus 1084 ~v~~~~v~~Gd~V~~Gd~L~~iEamKm 1110 (1143)
T TIGR01235 1084 VIIEVKVSSGQAVNKGDPLVVLEAMKM 1110 (1143)
T ss_pred EEEEEEeCCCCEeCCCCEEEEEEecce
Confidence 467789999999999999999995443
No 121
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=20.22 E-value=1.1e+02 Score=24.56 Aligned_cols=21 Identities=38% Similarity=0.430 Sum_probs=16.7
Q ss_pred ecCCCCeEecCceeEEEecCC
Q psy14345 18 SLEDGATVKAGQQLFKIKPTA 38 (431)
Q Consensus 18 ~~~eGd~v~VG~~L~~Ie~~~ 38 (431)
.+++||.|+.|++|..+...+
T Consensus 56 ~v~~G~~V~~G~~IG~~g~~~ 76 (96)
T PF01551_consen 56 SVKVGDRVKAGQVIGTVGNTG 76 (96)
T ss_dssp SS-TTSEE-TTCEEEEEBSCS
T ss_pred cceecccccCCCEEEecCCCC
Confidence 689999999999999999544
Done!