RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14345
(431 letters)
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 348 bits (895), Expect = e-117
Identities = 143/321 (44%), Positives = 191/321 (59%), Gaps = 25/321 (7%)
Query: 20 EDGATVKAGQQLFKIKPTATSVVDWWSSPEEGSSAQSRGYSS---SSSSSLCCCSSPSPS 76
E+G TV+ G L +I ++ + ++ + + S P+P
Sbjct: 104 EEGDTVEVGAPLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPP 163
Query: 77 LCYSSAIEAATVKLPPADPTKEISGT-RSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFN 135
+A + P ++ E RV M+RMRQRIA+RLK +QN AMLTTFN
Sbjct: 164 ----AAAKPPEPAPAAKPPPTPVARADPRETRVPMSRMRQRIAERLKASQNTCAMLTTFN 219
Query: 136 EIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDY 195
E DMSA++E RK + + FQKK+G+KLGFMS F+KAS AL+ P+VNA I+G +IVYR+Y
Sbjct: 220 ECDMSALMELRKEYKDDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAYIDGDEIVYRNY 279
Query: 196 VDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNW 255
VDISV + P GL+ V+ E+ + E+ A R N
Sbjct: 280 VDISVAVAT-----P----TGLVVPVIRNCENKS-------FAEIEKELADLAEKARNN- 322
Query: 256 NLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMY 315
L +ED GGTFTISNGGVFGSL+GTPIINPPQSAILGMH +RPV + ++V++P+MY
Sbjct: 323 KLTLEDMTGGTFTISNGGVFGSLMGTPIINPPQSAILGMHAIKKRPVVVGNEIVIRPIMY 382
Query: 316 VALTYDHRLIDGREAVLFLQK 336
+ALTYDHRLIDGR+AV FL+K
Sbjct: 383 LALTYDHRLIDGRDAVTFLKK 403
Score = 167 bits (424), Expect = 3e-47
Identities = 60/91 (65%), Positives = 72/91 (79%)
Query: 341 EAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVV 400
+ FQKK+G+KLGFMS F+KAS AL+ P+VNA I+G +IVYR+YVDISVAVATP GLVV
Sbjct: 235 DDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAYIDGDEIVYRNYVDISVAVATPTGLVV 294
Query: 401 PVIRNVEAMNFADIELTIAALGEKARTGKYT 431
PVIRN E +FA+IE +A L EKAR K T
Sbjct: 295 PVIRNCENKSFAEIEKELADLAEKARNNKLT 325
>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex
dihydrolipoamide succinyltransferase (E2 component).
This model describes the TCA cycle 2-oxoglutarate system
E2 component, dihydrolipoamide succinyltransferase. It
is closely related to the pyruvate dehydrogenase E2
component, dihydrolipoamide acetyltransferase. The seed
for this model includes mitochondrial and Gram-negative
bacterial forms. Mycobacterial candidates are highly
derived, differ in having and extra copy of the
lipoyl-binding domain at the N-terminus. They score
below the trusted cutoff, but above the noise cutoff and
above all examples of dihydrolipoamide acetyltransferase
[Energy metabolism, TCA cycle].
Length = 403
Score = 330 bits (849), Expect = e-110
Identities = 139/265 (52%), Positives = 176/265 (66%), Gaps = 21/265 (7%)
Query: 84 EAATVKLPPADPTKE-ISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAI 142
A+ + PA K + TR E+RVKM R+RQRIA+RLKEAQN AMLTTFNE+DMSA+
Sbjct: 152 PASAQQPAPAAAAKAPANFTRPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAV 211
Query: 143 IEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGM 202
+E RK + E F+KK+G+KLGFMS F+KA AL+ P VNA I+G DIVY+DY DISV +
Sbjct: 212 MELRKRYKEEFEKKHGVKLGFMSFFVKAVVAALKRFPEVNAEIDGDDIVYKDYYDISVAV 271
Query: 203 GRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDS 262
+ GL+ V+ + ++ E+ R L +ED
Sbjct: 272 STDR---------GLVVPVVRNADRMS-------FADIEKEIADLGKKARDG-KLTLEDM 314
Query: 263 DGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDH 322
GGTFTI+NGGVFGSL+ TPIINPPQSAILGMHG ERPVA+ GQ+ ++PMMY+AL+YDH
Sbjct: 315 TGGTFTITNGGVFGSLMSTPIINPPQSAILGMHGIKERPVAVNGQIEIRPMMYLALSYDH 374
Query: 323 RLIDGREAVLFLQ--KEAHLEAFQK 345
RLIDG+EAV FL KE LE ++
Sbjct: 375 RLIDGKEAVTFLVTIKEL-LEDPRR 398
Score = 160 bits (406), Expect = 7e-45
Identities = 63/102 (61%), Positives = 79/102 (77%), Gaps = 1/102 (0%)
Query: 330 AVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDIS 389
AV+ L+K + E F+KK+G+KLGFMS F+KA AL+ P VNA I+G DIVY+DY DIS
Sbjct: 210 AVMELRKR-YKEEFEKKHGVKLGFMSFFVKAVVAALKRFPEVNAEIDGDDIVYKDYYDIS 268
Query: 390 VAVATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGKYT 431
VAV+T +GLVVPV+RN + M+FADIE IA LG+KAR GK T
Sbjct: 269 VAVSTDRGLVVPVVRNADRMSFADIEKEIADLGKKARDGKLT 310
>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase;
Validated.
Length = 407
Score = 330 bits (848), Expect = e-110
Identities = 144/363 (39%), Positives = 202/363 (55%), Gaps = 67/363 (18%)
Query: 20 EDGATVKAGQQLFKIKPTATSVVDWWSSPEEGSSAQSRGYSSSSSSSLCCCSSPSPS--- 76
E+G TV GQ L +I A + ++ ++A + + +++++ + SP+
Sbjct: 62 EEGDTVTVGQVLGRIDEGAAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAARK 121
Query: 77 LCYSSAIEAATVK----------------------------LPPADPTKEISGTRSEQRV 108
L + ++A+ VK G R E+RV
Sbjct: 122 LAAENGLDASAVKGTGKGGRVTKEDVLAALAAAAAAPAAPAAAAPAAAPAPLGARPEERV 181
Query: 109 KMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFI 168
M R+R+ IA+RL EAQN AMLTTFNE+DM+ +++ RK + +AF+KK+G+KLGFMS F+
Sbjct: 182 PMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDLRKQYKDAFEKKHGVKLGFMSFFV 241
Query: 169 KASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHL 228
KA AL+ P VNA I+G DIVY +Y DI + +G PR GL+ VL + L
Sbjct: 242 KAVVEALKRYPEVNASIDGDDIVYHNYYDIGIAVGT-----PR----GLVVPVLRDADQL 292
Query: 229 N--------GKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLG 280
+ + +R + L+IE+ GGTFTI+NGGVFGSL+
Sbjct: 293 SFAEIEKKIAELAKKAR----------------DGKLSIEELTGGTFTITNGGVFGSLMS 336
Query: 281 TPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQ--KEA 338
TPIINPPQSAILGMH ERPVA+ GQ+V++PMMY+AL+YDHR+IDG+EAV FL KE
Sbjct: 337 TPIINPPQSAILGMHKIKERPVAVNGQIVIRPMMYLALSYDHRIIDGKEAVGFLVTIKEL 396
Query: 339 HLE 341
LE
Sbjct: 397 -LE 398
Score = 154 bits (392), Expect = 1e-42
Identities = 52/89 (58%), Positives = 69/89 (77%)
Query: 341 EAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVV 400
+AF+KK+G+KLGFMS F+KA AL+ P VNA I+G DIVY +Y DI +AV TP+GLVV
Sbjct: 224 DAFEKKHGVKLGFMSFFVKAVVEALKRYPEVNASIDGDDIVYHNYYDIGIAVGTPRGLVV 283
Query: 401 PVIRNVEAMNFADIELTIAALGEKARTGK 429
PV+R+ + ++FA+IE IA L +KAR GK
Sbjct: 284 PVLRDADQLSFAEIEKKIAELAKKARDGK 312
>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component.
Length = 463
Score = 244 bits (623), Expect = 4e-76
Identities = 137/330 (41%), Positives = 194/330 (58%), Gaps = 43/330 (13%)
Query: 19 LEDGATVKAGQQLFKIKPTATSV------------VDWWSSPEEGSSAQSRGYSSSSSSS 66
+++G TV+ G ++ I + + D SP + + S+ +
Sbjct: 150 VKEGDTVEPGTKVAIISKSEDAASQVTPSQKIPETTDPKPSPPAEDKQKPKVESAPVAEK 209
Query: 67 LCCCSSPSPSLCYSSAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQN 126
SSP P SA E +LPP + E+RV M R+R+R+A RLK++QN
Sbjct: 210 PKAPSSPPPP--KQSAKEP---QLPPKE---------RERRVPMTRLRKRVATRLKDSQN 255
Query: 127 VNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIE 186
A+LTTFNE+DM+ +++ R + +AF +K+G+KLG MS FIKA+ ALQ QPVVNAVI+
Sbjct: 256 TFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVID 315
Query: 187 GTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTG 246
G DI+YRDYVDIS+ +G ++ GL+ V+ + +N + +
Sbjct: 316 GDDIIYRDYVDISIAVGTSK---------GLVVPVIRGADKMNFAEIEKTINGLAKKAN- 365
Query: 247 WACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKG 306
++I++ GG+FT+SNGGV+GSL+ TPIINPPQSAILGMH RP+ + G
Sbjct: 366 -------EGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVVGG 418
Query: 307 QVVVKPMMYVALTYDHRLIDGREAVLFLQK 336
VV +PMMYVALTYDHRLIDGREAV FL++
Sbjct: 419 SVVPRPMMYVALTYDHRLIDGREAVYFLRR 448
Score = 124 bits (312), Expect = 3e-31
Identities = 59/88 (67%), Positives = 70/88 (79%)
Query: 341 EAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVV 400
+AF +K+G+KLG MS FIKA+ ALQ QPVVNAVI+G DI+YRDYVDIS+AV T KGLVV
Sbjct: 280 DAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSKGLVV 339
Query: 401 PVIRNVEAMNFADIELTIAALGEKARTG 428
PVIR + MNFA+IE TI L +KA G
Sbjct: 340 PVIRGADKMNFAEIEKTINGLAKKANEG 367
>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide acyltransferase (E2) component, and
related enzymes [Energy production and conversion].
Length = 404
Score = 211 bits (540), Expect = 2e-64
Identities = 105/254 (41%), Positives = 144/254 (56%), Gaps = 20/254 (7%)
Query: 84 EAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAII 143
+AA P S E+RV M+R+R+ IA+R+ E++ LT FNE+DM+ ++
Sbjct: 154 KAAAAAAPAPAAAAPASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLM 213
Query: 144 EFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTD--IVYRDYVDISVG 201
RK E F+KK G+KL F+S +KA AL+ P VNA I+G IVY YV+I +
Sbjct: 214 ALRKKLKEEFEKK-GVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIA 272
Query: 202 MGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIED 261
+ + PR GL+ V+ + K + R L E+
Sbjct: 273 V-----DTPR----GLVVPVIR---DADKKSLAEIAKEIKDLAKKA----RDG-KLTPEE 315
Query: 262 SDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYD 321
GGTFTISN G+FGSL+ TPIINPPQ AILG+ ERPV + G++VV+PMMY++L+YD
Sbjct: 316 MQGGTFTISNLGMFGSLMFTPIINPPQVAILGVGAIEERPVVVGGEIVVRPMMYLSLSYD 375
Query: 322 HRLIDGREAVLFLQ 335
HR+IDG EA FL
Sbjct: 376 HRVIDGAEAARFLV 389
Score = 107 bits (270), Expect = 7e-26
Identities = 46/99 (46%), Positives = 60/99 (60%), Gaps = 9/99 (9%)
Query: 340 LEAFQKKY-------GLKLGFMSPFIKASAYALQDQPVVNAVIEGTD--IVYRDYVDISV 390
L A +KK G+KL F+S +KA AL+ P VNA I+G IVY YV+I +
Sbjct: 212 LMALRKKLKEEFEKKGVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGI 271
Query: 391 AVATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGK 429
AV TP+GLVVPVIR+ + + A+I I L +KAR GK
Sbjct: 272 AVDTPRGLVVPVIRDADKKSLAEIAKEIKDLAKKARDGK 310
>gnl|CDD|215782 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase
(catalytic domain). These proteins contain one to three
copies of a lipoyl binding domain followed by the
catalytic domain.
Length = 212
Score = 178 bits (453), Expect = 9e-54
Identities = 75/217 (34%), Positives = 118/217 (54%), Gaps = 19/217 (8%)
Query: 121 LKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPV 180
+ E++ T +E+D++A++ R+ E +K+ GLKL F+ +KA A AL++ P
Sbjct: 1 MTESKQTIPHFTLTDEVDVTALLALREKLKEDAKKE-GLKLTFLDFLVKAVALALKEFPE 59
Query: 181 VNAVIEGTD-IVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPS 239
+NA +G IVY+ YV+I + + P GL+ V+ + ++
Sbjct: 60 LNASWDGDAEIVYKKYVNIGIAV-----ATPD----GLIVPVIRNADRK-SLLEIAKE-- 107
Query: 240 YERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFE 299
+ + L ED GGTFTISN G+FG TPIINPPQ AILG+ +
Sbjct: 108 IKDLAE-----RARDGKLKPEDLQGGTFTISNLGMFGVTFFTPIINPPQVAILGVGAIRK 162
Query: 300 RPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQK 336
RPV + G++V++ +M ++L++DHR+IDG EA FL
Sbjct: 163 RPVVVDGEIVIRKVMPLSLSFDHRVIDGAEAARFLND 199
Score = 111 bits (279), Expect = 2e-28
Identities = 43/86 (50%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Query: 345 KKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTD-IVYRDYVDISVAVATPKGLVVPVI 403
KK GLKL F+ +KA A AL++ P +NA +G IVY+ YV+I +AVATP GL+VPVI
Sbjct: 34 KKEGLKLTFLDFLVKAVALALKEFPELNASWDGDAEIVYKKYVNIGIAVATPDGLIVPVI 93
Query: 404 RNVEAMNFADIELTIAALGEKARTGK 429
RN + + +I I L E+AR GK
Sbjct: 94 RNADRKSLLEIAKEIKDLAERARDGK 119
>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase
subunit E2; Reviewed.
Length = 411
Score = 177 bits (451), Expect = 4e-51
Identities = 86/275 (31%), Positives = 133/275 (48%), Gaps = 58/275 (21%)
Query: 79 YSSAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEA-QNVNAMLTTFNEI 137
++A A A + E+RV ++ MR+ IA+R+ E+ + + T +E+
Sbjct: 162 AAAAAAPAAAAAAAAAAAPPAAAAEGEERVPLSGMRKAIAKRMVESKREI-PHFTLTDEV 220
Query: 138 DMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVD 197
D++A++ RK K G+KL IKA A AL+ P +NA + IV + YV+
Sbjct: 221 DVTALLALRKQL-----KAIGVKLTVTDFLIKAVALALKKFPELNASWDDDAIVLKKYVN 275
Query: 198 ISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLN-WN 256
I + + + GL+ V V+ R D+ + +
Sbjct: 276 IGIAVATD---------GGLI--VPVI-----------------RDA------DKKSLFE 301
Query: 257 LAIEDSD----------------GGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFER 300
LA E D GGTFTISN G+FG TPIINPP+ AILG+ ER
Sbjct: 302 LAREIKDLAEKAREGKLKPEELQGGTFTISNLGMFGGDYFTPIINPPEVAILGVGAIVER 361
Query: 301 PVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQ 335
PV + G++VV+ +M ++L++DHR+IDG +A FL+
Sbjct: 362 PVVVDGEIVVRKVMPLSLSFDHRVIDGADAARFLK 396
Score = 102 bits (258), Expect = 5e-24
Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 340 LEAFQKKYG---LKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPK 396
L A +K+ +KL IKA A AL+ P +NA + IV + YV+I +AVAT
Sbjct: 225 LLALRKQLKAIGVKLTVTDFLIKAVALALKKFPELNASWDDDAIVLKKYVNIGIAVATDG 284
Query: 397 GLVVPVIRNVEAMNFADIELTIAALGEKARTGK 429
GL+VPVIR+ + + ++ I L EKAR GK
Sbjct: 285 GLIVPVIRDADKKSLFELAREIKDLAEKAREGK 317
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component,
dihydrolipoamide succinyltransferase. This model
represents an Actinobacterial clade of E2 enzyme, a
component of the 2-oxoglutarate dehydrogenase complex
involved in the TCA cycle. These proteins have multiple
domains including the catalytic domain (pfam00198), one
or two biotin domains (pfam00364) and an E3-component
binding domain (pfam02817).
Length = 579
Score = 145 bits (366), Expect = 4e-38
Identities = 88/271 (32%), Positives = 134/271 (49%), Gaps = 31/271 (11%)
Query: 71 SSPSPSLCYSSAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAM 130
++P+ + ++ AA P T ++ GT KMNR+RQ A + E+ +A
Sbjct: 315 AAPAAAAAPAAPAAAAK---PAEPDTAKLRGTTQ----KMNRIRQITADKTIESLQTSAQ 367
Query: 131 LTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGT 188
LT +E+DM+ + R F +K G+ L F+ F++A AL+ P VNA E
Sbjct: 368 LTQVHEVDMTRVAALRARAKNDFLEKNGVNLTFLPFFVQAVTEALKAHPNVNASYNAETK 427
Query: 189 DIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWA 248
++ Y D + + + + PR GLL V+ L+ P + A
Sbjct: 428 EVTYHDVEHVGIAV-----DTPR----GLLVPVIHNAGDLS-------LPGLAKAINDLA 471
Query: 249 CYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQ- 307
R N L ++ GGTFTI+N G G+L TPI+NPPQ+AILG +RP IK +
Sbjct: 472 ARARDN-KLKPDELSGGTFTITNIGSGGALFDTPILNPPQAAILGTGAIVKRPRVIKDED 530
Query: 308 ----VVVKPMMYVALTYDHRLIDGREAVLFL 334
+ ++ + Y+ LTYDHRL+DG +A FL
Sbjct: 531 GGESIAIRSVCYLPLTYDHRLVDGADAGRFL 561
Score = 70.8 bits (173), Expect = 4e-13
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 342 AFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDISVAVATPKGLV 399
F +K G+ L F+ F++A AL+ P VNA E ++ Y D + +AV TP+GL+
Sbjct: 389 DFLEKNGVNLTFLPFFVQAVTEALKAHPNVNASYNAETKEVTYHDVEHVGIAVDTPRGLL 448
Query: 400 VPVIRNVEAMNFADIELTIAALGEKARTGK 429
VPVI N ++ + I L +AR K
Sbjct: 449 VPVIHNAGDLSLPGLAKAINDLAARARDNK 478
>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.
Length = 547
Score = 137 bits (347), Expect = 2e-35
Identities = 75/283 (26%), Positives = 125/283 (44%), Gaps = 55/283 (19%)
Query: 71 SSPSPSLCYSSAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAM 130
S+ + + ++A + L P P + S + ++R+++ A L +
Sbjct: 286 SAAAAAAAAAAAAGGGGLGLLPW-PKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPH 344
Query: 131 LTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGT 188
+T F+E D++ + RK + +K G+KL + FIKA AL++ PV NA + +G
Sbjct: 345 VTQFDEADITDLEALRKQLKKEAEKA-GVKLTMLPFFIKAVVAALKEFPVFNASLDEDGD 403
Query: 189 DIVYRDYVDISVGMGRNESNLPRWCFNGLLS---------GVLVLTEHL--------NGK 231
++ Y+ Y +I G + P NGL+ +L + + +GK
Sbjct: 404 ELTYKKYFNI--GFA---VDTP----NGLVVPVIKDVDKKSLLEIAREIAELAKKARDGK 454
Query: 232 YCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAI 291
L +D GG FTIS+ G G TPIIN P+ AI
Sbjct: 455 -------------------------LKPDDMQGGCFTISSLGGIGGTAFTPIINAPEVAI 489
Query: 292 LGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFL 334
LG+ + +PV + V + M+ ++L+YDHR+IDG A F
Sbjct: 490 LGVGKSQMKPVWDGKEFVPRLMLPLSLSYDHRVIDGATAARFT 532
Score = 93.0 bits (232), Expect = 2e-20
Identities = 41/98 (41%), Positives = 60/98 (61%), Gaps = 5/98 (5%)
Query: 337 EAHLEAFQKKY---GLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDISVA 391
EA + +K+ G+KL + FIKA AL++ PV NA + +G ++ Y+ Y +I A
Sbjct: 357 EALRKQLKKEAEKAGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIGFA 416
Query: 392 VATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGK 429
V TP GLVVPVI++V+ + +I IA L +KAR GK
Sbjct: 417 VDTPNGLVVPVIKDVDKKSLLEIAREIAELAKKARDGK 454
>gnl|CDD|184847 PRK14843, PRK14843, dihydrolipoamide acetyltransferase;
Provisional.
Length = 347
Score = 123 bits (309), Expect = 1e-31
Identities = 81/264 (30%), Positives = 126/264 (47%), Gaps = 25/264 (9%)
Query: 74 SPSLCYSSAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTT 133
+ S+ + IE P EI +R+ M MR+ IAQR+ E+ T
Sbjct: 93 NDSIKSPAQIEKVEEVPDNVTPYGEI------ERIPMTPMRKVIAQRMVESYLTAPTFTL 146
Query: 134 FNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIV 191
E+DM+ ++ RK LE + G K A L P +NA + +G I+
Sbjct: 147 NYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINASLTEDGKTII 206
Query: 192 YRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYD 251
+YV++++ +G + NGL++ V+ E K +S + G
Sbjct: 207 THNYVNLAMAVGMD---------NGLMTPVVYNAE----KMSLSELVVAFKDVIGRT--- 250
Query: 252 RLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVK 311
L+ LA + TFTISN G+FG PIIN P SAILG+ T E+PV + G++V++
Sbjct: 251 -LDGKLAPSELQNSTFTISNLGMFGVQSFGPIINQPNSAILGVSSTIEKPVVVNGEIVIR 309
Query: 312 PMMYVALTYDHRLIDGREAVLFLQ 335
P+M + LT DHR++DG F++
Sbjct: 310 PIMSLGLTIDHRVVDGMAGAKFMK 333
Score = 42.6 bits (100), Expect = 3e-04
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 7/117 (5%)
Query: 317 ALTYDHRLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI- 375
L Y+ +D E L L+K+ LE + G K A L P +NA +
Sbjct: 145 TLNYE---VDMTEM-LALRKKV-LEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINASLT 199
Query: 376 -EGTDIVYRDYVDISVAVATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGKYT 431
+G I+ +YV++++AV GL+ PV+ N E M+ +++ + + + GK
Sbjct: 200 EDGKTIITHNYVNLAMAVGMDNGLMTPVVYNAEKMSLSELVVAFKDVIGRTLDGKLA 256
>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase;
Validated.
Length = 633
Score = 120 bits (304), Expect = 2e-29
Identities = 70/247 (28%), Positives = 120/247 (48%), Gaps = 24/247 (9%)
Query: 91 PPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKA-H 149
P D +K G E V++ R+++ L + +T F++ D++ + FRK +
Sbjct: 393 PKVDFSK--FGEIEE--VELGRIQKISGANLHRNWVMIPHVTQFDKADITELEAFRKQQN 448
Query: 150 LEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDISVGMGRNES 207
EA ++K G+K+ + +KA A AL+ P N+ + +G + + YV+I + +
Sbjct: 449 AEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIAV----- 503
Query: 208 NLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTF 267
+ P NGL+ V + +N K R + R + L D GG F
Sbjct: 504 DTP----NGLVVPVF---KDVNKK----GIIELSRELMDISKKAR-DGKLTAGDMQGGCF 551
Query: 268 TISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDG 327
TIS+ G G+ TPI+N P+ AILG+ + PV + + M+ ++L+YDHR+IDG
Sbjct: 552 TISSIGGLGTTHFTPIVNAPEVAILGVSKSAMEPVWNGKEFAPRLMLPLSLSYDHRVIDG 611
Query: 328 REAVLFL 334
+ F+
Sbjct: 612 ADGARFI 618
Score = 91.6 bits (228), Expect = 8e-20
Identities = 34/100 (34%), Positives = 58/100 (58%), Gaps = 2/100 (2%)
Query: 334 LQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDISVA 391
+K+ + EA ++K G+K+ + +KA A AL+ P N+ + +G + + YV+I +A
Sbjct: 443 FRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIA 502
Query: 392 VATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGKYT 431
V TP GLVVPV ++V ++ + + +KAR GK T
Sbjct: 503 VDTPNGLVVPVFKDVNKKGIIELSRELMDISKKARDGKLT 542
>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model represents one of several closely related clades
of the dihydrolipoamide acetyltransferase subunit of the
pyruvate dehydrogenase complex. It includes sequences
from mitochondria and from alpha and beta branches of
the proteobacteria, as well as from some other bacteria.
Sequences from Gram-positive bacteria are not included.
The non-enzymatic homolog protein X, which serves as an
E3 component binding protein, falls within the clade
phylogenetically but is rejected by its low score
[Energy metabolism, Pyruvate dehydrogenase].
Length = 436
Score = 111 bits (278), Expect = 1e-26
Identities = 79/263 (30%), Positives = 112/263 (42%), Gaps = 22/263 (8%)
Query: 75 PSLCYSSAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTF 134
+SA + A P P T S + V ++ +R+ IA+RL E++
Sbjct: 178 VPQSPASANQQAAATTPATYPAAAPVSTGSYEDVPLSNIRKIIAKRLLESKQTIPHYYVS 237
Query: 135 NEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRD 194
E ++ ++ RK + Y KL IKASA AL++ P N+ I
Sbjct: 238 IECNVDKLLALRKELNAMASEVY--KLSVNDFIIKASALALREVPEANSSWTDNFIRRYK 295
Query: 195 YVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLN 254
VDISV + P +GL++ + V G +S A R N
Sbjct: 296 NVDISVAV-----ATP----DGLITPI-VRNADAKGLSTIS------NEIKDLAKRARNN 339
Query: 255 WNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQ---VVVK 311
L E+ GGTFTISN G+FG T IINPPQ+ IL + + V + V
Sbjct: 340 -KLKPEEFQGGTFTISNLGMFGIKDFTAIINPPQACILAVGAVEDVAVVDNDEEKGFAVA 398
Query: 312 PMMYVALTYDHRLIDGREAVLFL 334
+M V L+ DHR+IDG FL
Sbjct: 399 SIMSVTLSCDHRVIDGAVGAEFL 421
Score = 77.1 bits (190), Expect = 3e-15
Identities = 32/72 (44%), Positives = 42/72 (58%)
Query: 358 IKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVVPVIRNVEAMNFADIELT 417
IKASA AL++ P N+ I VDISVAVATP GL+ P++RN +A + I
Sbjct: 269 IKASALALREVPEANSSWTDNFIRRYKNVDISVAVATPDGLITPIVRNADAKGLSTISNE 328
Query: 418 IAALGEKARTGK 429
I L ++AR K
Sbjct: 329 IKDLAKRARNNK 340
>gnl|CDD|237002 PRK11857, PRK11857, dihydrolipoamide acetyltransferase; Reviewed.
Length = 306
Score = 98.7 bits (246), Expect = 3e-23
Identities = 68/268 (25%), Positives = 123/268 (45%), Gaps = 22/268 (8%)
Query: 71 SSPSPSLCYSSAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAM 130
S+P+P+ S + K + E K+ +R+ IA+ + + + A
Sbjct: 45 SAPTPAEAASVSSAQQAAKTAAPAAAPPKLEGKRE---KVAPIRKAIARAMTNSWSNVAY 101
Query: 131 LTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIE--GT 188
+ NEIDM+ + + RK+ + K G+KL F+ KA AL++ P+ A + +
Sbjct: 102 VNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAKYDEATS 161
Query: 189 DIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWA 248
++VY D +++ + + GL+ V+ + L+ + E A
Sbjct: 162 ELVYPDTLNLGIAVDTEA---------GLMVPVIKNAQKLS-----IVEIAKEISRLAKA 207
Query: 249 CYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQV 308
+R + ++ GG+FTI+N G GSL G P+IN P+ AI G+ ++ + GQ+
Sbjct: 208 ARER---KIKPDEMKGGSFTITNYGSVGSLYGVPVINYPELAIAGVGAIIDKAIVKNGQI 264
Query: 309 VVKPMMYVALTYDHRLIDGREAVLFLQK 336
V +M++ + DHR IDG F +
Sbjct: 265 VAGKVMHLTVAADHRWIDGATIGRFASR 292
Score = 61.3 bits (149), Expect = 2e-10
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 340 LEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIE--GTDIVYRDYVDISVAVATPKG 397
+ K G+KL F+ KA AL++ P+ A + +++VY D +++ +AV T G
Sbjct: 121 KDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAKYDEATSELVYPDTLNLGIAVDTEAG 180
Query: 398 LVVPVIRNVEAMNFADIELTIAALGEKARTGK 429
L+VPVI+N + ++ +I I+ L + AR K
Sbjct: 181 LMVPVIKNAQKLSIVEIAKEISRLAKAARERK 212
>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model describes a subset of pyruvate dehydrogenase
complex dihydrolipoamide acetyltransferase specifically
close by both phylogenetic and per cent identity (UPGMA)
trees. Members of this set include two or three copies
of the lipoyl-binding domain. E. coli AceF is a member
of this model, while mitochondrial and some other
bacterial forms belong to a separate model [Energy
metabolism, Pyruvate dehydrogenase].
Length = 546
Score = 93.4 bits (232), Expect = 2e-20
Identities = 68/231 (29%), Positives = 113/231 (48%), Gaps = 20/231 (8%)
Query: 106 QRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMS 165
+ V M+R+R+ L + +T F++ D++ + FRK A +K G+KL +
Sbjct: 319 EEVDMSRIRKISGANLTRNWTMIPHVTHFDKADITEMEAFRKQ-QNAAVEKEGVKLTVLH 377
Query: 166 PFIKASAYALQDQPVVNAVIE--GTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLV 223
+KA A AL+ P NA ++ G ++ + YV+I V + + P NGLL V+
Sbjct: 378 ILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIGVAV-----DTP----NGLLVPVI- 427
Query: 224 LTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPI 283
+ ++ K + A R + L ++ G FTIS+ G G TPI
Sbjct: 428 --KDVDRKGITE----LALELSDLAKKAR-DGKLTPDEMQGACFTISSLGGIGGTAFTPI 480
Query: 284 INPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFL 334
+N P+ AILG+ + PV + + M+ ++L+YDHR+IDG +A F
Sbjct: 481 VNAPEVAILGVSKSGMEPVWNGKEFEPRLMLPLSLSYDHRVIDGADAARFT 531
Score = 70.7 bits (173), Expect = 4e-13
Identities = 40/101 (39%), Positives = 61/101 (60%), Gaps = 9/101 (8%)
Query: 340 LEAFQK-------KYGLKLGFMSPFIKASAYALQDQPVVNAVIE--GTDIVYRDYVDISV 390
+EAF+K K G+KL + +KA A AL+ P NA ++ G ++ + YV+I V
Sbjct: 355 MEAFRKQQNAAVEKEGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIGV 414
Query: 391 AVATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGKYT 431
AV TP GL+VPVI++V+ ++ L ++ L +KAR GK T
Sbjct: 415 AVDTPNGLLVPVIKDVDRKGITELALELSDLAKKARDGKLT 455
>gnl|CDD|215289 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component.
Length = 416
Score = 74.8 bits (184), Expect = 1e-14
Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 41/205 (20%)
Query: 136 EIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEG--TDIVYR 193
EI++ A++E KA + +K F+ IK+ + AL P++N+ ++I +
Sbjct: 215 EINVDALVEL-KASFQENNTDPTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLK 273
Query: 194 DYVDISVGMGRNESNL--P--RWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWAC 249
+I V M E L P + LS +L +T+ L+
Sbjct: 274 GSHNIGVAMA-TEHGLVVPNIKNV--QSLS-LLEITKELS-------------------- 309
Query: 250 YDRL-----NWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPV-- 302
RL L ED GGT T+SN G G G+P++N P+ AI+ + G ++
Sbjct: 310 --RLQHLAAENKLNPEDITGGTITLSNIGAIGGKFGSPVLNLPEVAIIAL-GRIQKVPRF 366
Query: 303 AIKGQVVVKPMMYVALTYDHRLIDG 327
G V +M V + DHR++DG
Sbjct: 367 VDDGNVYPASIMTVTIGADHRVLDG 391
Score = 70.1 bits (172), Expect = 4e-13
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 338 AHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEG--TDIVYRDYVDISVAVATP 395
A + +K F+ IK+ + AL P++N+ ++I + +I VA+AT
Sbjct: 226 ASFQENNTDPTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATE 285
Query: 396 KGLVVPVIRNVEAMNFADIELTIAALGEKARTGK 429
GLVVP I+NV++++ +I ++ L A K
Sbjct: 286 HGLVVPNIKNVQSLSLLEITKELSRLQHLAAENK 319
>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase
component of pyruvate dehydrogenase complex.
Length = 539
Score = 67.6 bits (165), Expect = 4e-12
Identities = 65/188 (34%), Positives = 91/188 (48%), Gaps = 27/188 (14%)
Query: 147 KAHLEAFQKKYGLKLGFMSPF-IKASAYALQDQPVVNAVIEGTDIVYRDY--VDISVGMG 203
++ L + Q+ G K ++ IKA+A AL+ P N+ TD R Y V+I+V +
Sbjct: 350 RSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNS--SWTDDYIRQYHNVNINVAVQ 407
Query: 204 RNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSD 263
NGL V+ + K +S+ + A R N +L ED +
Sbjct: 408 TE---------NGLYVPVVKDAD----KKGLSTIAEEVKQLAQKA---REN-SLKPEDYE 450
Query: 264 GGTFTISN-GGVFGSLLGTPIINPPQSAILGMHGTFER---PVAIKGQVVVKPMMYVALT 319
GGTFT+SN GG FG IINPPQSAIL + G+ E+ P + Q M V L+
Sbjct: 451 GGTFTVSNLGGPFGIKQFCAIINPPQSAILAV-GSAEKRVIPGSGPDQYNFASFMSVTLS 509
Query: 320 YDHRLIDG 327
DHR+IDG
Sbjct: 510 CDHRVIDG 517
Score = 49.5 bits (118), Expect = 2e-06
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 340 LEAFQKKYGLKLGFMSPF-IKASAYALQDQPVVNAVIEGTDIVYRDY--VDISVAVATPK 396
L + Q+ G K ++ IKA+A AL+ P N+ TD R Y V+I+VAV T
Sbjct: 353 LNSLQEASGGKKISVNDLVIKAAALALRKVPQCNS--SWTDDYIRQYHNVNINVAVQTEN 410
Query: 397 GLVVPVIRNVEAMNFADIELTIAALGEKAR 426
GL VPV+++ + + I + L +KAR
Sbjct: 411 GLYVPVVKDADKKGLSTIAEEVKQLAQKAR 440
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 42.6 bits (101), Expect = 4e-04
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Query: 247 WACYDRL-----NWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERP 301
WA Y+ + + L +D G T +++N G G++ P + Q AI+G+ G E P
Sbjct: 243 WAAYEDIVRRARDGKLTADDFQGTTISLTNPGGIGTVHSVPRLMKGQGAIIGV-GAMEYP 301
Query: 302 VAIKG-------QVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHL 340
+G ++ + +M + TYDHR+I G E+ FL+ L
Sbjct: 302 AEFQGASEERLAELGISKVMTLTSTYDHRIIQGAESGEFLRTIHQL 347
Score = 42.2 bits (100), Expect = 5e-04
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 364 ALQDQPVVN---AVIEGT-DIVYRDYVDISVAVATPK-----GLVVPVIRNVEAMNFADI 414
AL+ P +N A ++G +V +V++ +A+ PK LVVP I+ E M+FA
Sbjct: 183 ALKAFPNMNRHYAEVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQF 242
Query: 415 ELTIAALGEKARTGKYT 431
+ +AR GK T
Sbjct: 243 WAAYEDIVRRARDGKLT 259
>gnl|CDD|240095 cd04747, OYE_like_5_FMN, Old yellow enzyme (OYE)-related FMN
binding domain, group 5. Each monomer of OYE contains
FMN as a non-covalently bound cofactor, uses NADPH as a
reducing agent with oxygens, quinones, and
alpha,beta-unsaturated aldehydes and ketones, and can
act as electron acceptors in the catalytic reaction.
Other members of OYE family include trimethylamine
dehydrogenase, 2,4-dienoyl-CoA reductase, enoate
reductase, pentaerythriol tetranitrate reductase,
xenobiotic reductase, and morphinone reductase.
Length = 361
Score = 34.6 bits (80), Expect = 0.088
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 389 SVAVATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGK 429
V +P GLV P M ADI+ IAA A +
Sbjct: 114 DVPPLSPSGLVGPGKPVGREMTEADIDDVIAAFARAAADAR 154
>gnl|CDD|197287 cd09191, PLDc_DNaseII_alpha_2, Catalytic domain, repeat 2, of
Deoxyribonuclease II alpha and similar proteins.
Catalytic domain, repeat 2, of Deoxyribonuclease II
alpha (DNase II alpha, EC 3.1.22.1) and similar
proteins. DNase II is a monomeric nuclease that contains
two copies of a variant HKD motif, where the aspartic
acid residue is not conserved. The HKD motif
(H-x-K-x(4)-D, where x represents any amino acid
residue) characterizes the phospholipase D (PLD, EC
3.1.4.4) superfamily. The catalytic center of DNase II
is formed by the two variant HKD motifs from the N- and
C-terminal domains in a pseudodimeric way. Members of
this family are mainly found in metazoans, and
vertebrate proteins have been further classified into
DNase II alpha and beta. DNase II alpha is an acidic
endonuclease found in lysosomes, nuclei, and various
secretions. It plays a critical role in the degradation
of nuclear DNA expelled from erythroid precursor cells,
as well as in the degradation of the apoptotic DNA after
macrophages engulf them. It cleaves double-stranded DNA
to short 3'-phosphoryl oligonucleotides, rather than
3'-hydroxyl groups, and functions optimally at acidic pH
in the absence of divalent metal ion cofactors.
Length = 137
Score = 31.1 bits (70), Expect = 0.48
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 7/36 (19%)
Query: 231 KYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGT 266
K+CVS++ GW C +N N+A E GGT
Sbjct: 87 KWCVSTKA-------GWVCVGDMNRNMAEEQRGGGT 115
>gnl|CDD|224646 COG1732, OpuBC, Periplasmic glycine betaine/choline-binding
(lipo)protein of an ABC-type transport system
(osmoprotectant binding protein) [Cell envelope
biogenesis, outer membrane].
Length = 300
Score = 31.9 bits (73), Expect = 0.60
Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 25/91 (27%)
Query: 113 MRQRIAQRLKEAQNVNAMLTTF-------NEIDMSAIIEF--RKAHLEAFQKKYGLKLG- 162
+R+ +A++ L T N++ + A EF R L A QK YG
Sbjct: 142 VRKDVAEKYN--------LETISDLAKHSNQLKLGADSEFAERADGLPALQKAYGFDFKP 193
Query: 163 ---FMSPFIKASAY-ALQDQPVVNAVIEGTD 189
M Y AL++ V A TD
Sbjct: 194 DLRTMDG---GLTYQALKNGTVDAADAYSTD 221
Score = 29.2 bits (66), Expect = 4.1
Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 8/52 (15%)
Query: 333 FLQKEAHLEAFQKKYGLKLG----FMSPFIKASAY-ALQDQPVVNAVIEGTD 379
F ++ L A QK YG M Y AL++ V A TD
Sbjct: 173 FAERADGLPALQKAYGFDFKPDLRTMDG---GLTYQALKNGTVDAADAYSTD 221
>gnl|CDD|218186 pfam04636, PA26, PA26 p53-induced protein (sestrin). PA26 is a
p53-inducible protein. Its function is unknown. It has
similarity to pfam04636 in its N-terminus.
Length = 450
Score = 31.2 bits (71), Expect = 1.2
Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 10/89 (11%)
Query: 47 SPEEGSSAQSRGYSSSSSSSLCCCS-SPSPSLCYSSAIEAATVKLPPADPTKEISGTRSE 105
PE S S S + C C + S A+ + + T E
Sbjct: 178 EPEVDLEE-SHTLSPPSVLTQCTCDFLNGNDIDNSEAVMSLLFRKVQRPET--------E 228
Query: 106 QRVKMNRMRQRIAQRLKEAQNVNAMLTTF 134
M RM++ +R + + M T F
Sbjct: 229 VEALMERMKKLQEERDDDEASQEEMTTRF 257
>gnl|CDD|219385 pfam07352, Phage_Mu_Gam, Bacteriophage Mu Gam like protein. This
family consists of bacterial and phage Gam proteins. The
gam gene of bacteriophage Mu encodes a protein which
protects linear double stranded DNA from exonuclease
degradation in vitro and in vivo.
Length = 147
Score = 29.5 bits (67), Expect = 1.8
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 97 KEISGTRSEQRVKMNRMRQRIAQRLK-EAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQK 155
E+ E + N RI + E + + + S + E+ +A+ + K
Sbjct: 13 GELKREIEEIETEANDEIARIKEWYAPELEPLKDEIEYLE----SLVQEYCEANRDELPK 68
Query: 156 KYGLKLGF 163
K LKL +
Sbjct: 69 KKTLKLPY 76
>gnl|CDD|148818 pfam07428, Tri3, 15-O-acetyltransferase Tri3. This family
represents a conserved region approximately 400 residues
long within 15-O-acetyltransferase (Tri3), which seems
to be restricted to ascomycete fungi. In Fusarium
sporotrichioides, this is required for acetylation of
the C-15 hydroxyl group of trichothecenes in the
biosynthesis of T-2 toxin.
Length = 408
Score = 30.4 bits (68), Expect = 2.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 34 IKPTATSVVDWWSSPEEGSSAQSRGYSSSS 63
++PTA S +D W+ EEG +A S
Sbjct: 113 VQPTAKSAIDLWTEMEEGRAAAKDNTPSKP 142
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 30.5 bits (69), Expect = 2.4
Identities = 20/95 (21%), Positives = 27/95 (28%), Gaps = 15/95 (15%)
Query: 36 PTATSVVDWWSSPEEGSSAQSRGYSSS----SSSSLCCCSSPSPSLCYSSAIEAATVKLP 91
+ + SS E SS+ S SS S SPSPS A ++ K P
Sbjct: 310 SSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRP 369
Query: 92 P----------ADPTKEISGTRSEQRVKMNRMRQR 116
+ R+ R R
Sbjct: 370 RPSRAPSSPAASAGRPTRRRARA-AVAGRARRRDA 403
>gnl|CDD|200334 TIGR03892, thiopep_precurs, thiazolylpeptide-type bacteriocin
precursor. Members of this protein family are the
precursors of a family of small bacteriocins (i.e.
microcins) with thiopeptide type modifications, a
highly modified subclass of heterocycle-containing
peptide antibiotics. Members tend to be found clustered
in genomes with proteins recognized by TIGR03891 and
proteins/domains annotated as lantibiotic dehydratase
(pfam04737, pfam04738), and with a
cyclodehydratase/docking protein fusion protein
characteristic of heterocycle formation. The seed
alignment includes both an N-terminal leader peptide
region and a C-terminal low-complexity region
consisting mostly of Cys and Ser residues. Members with
known function block translation by inhibiting
translation factor activity [Cellular processes, Toxin
production and resistance].
Length = 43
Score = 26.6 bits (59), Expect = 2.8
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 48 PEEGSSAQSRGYSSSSSSSLCCCSS 72
GS++ S SSS +++ C CS
Sbjct: 21 GASGSTSCSS--SSSCTTTSCTCSC 43
>gnl|CDD|239475 cd03380, PAP2_like_1, PAP2_like_1 proteins, a sub-family of PAP2,
containing bacterial acid phosphatase, vanadium
chloroperoxidases and vanadium bromoperoxidases.
Length = 209
Score = 28.9 bits (65), Expect = 3.6
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 254 NWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMH 295
LA D+DGG F LGTP ++ ++ L
Sbjct: 56 QTALAAFDADGGDPPPHYANAFSIALGTPGLSEERTPRLYAL 97
>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in
Synaptotagmin 4. Synaptotagmin is a
membrane-trafficking protein characterized by a
N-terminal transmembrane region, a linker, and 2
C-terminal C2 domains. Synaptotagmin 4, a member of
class 4 synaptotagmins, is located in the brain. It
functions are unknown. It, like synaptotagmin-11, has an
Asp to Ser substitution in its C2A domain. Previously
all synaptotagmins were thought to be calcium sensors in
the regulation of neurotransmitter release and hormone
secretion, but it has been shown that not all of them
bind calcium. Of the 17 identified synaptotagmins only
8 bind calcium (1-3, 5-7, 9, 10). The function of the
two C2 domains that bind calcium are: regulating the
fusion step of synaptic vesicle exocytosis (C2A) and
binding to phosphatidyl-inositol-3,4,5-triphosphate
(PIP3) in the absence of calcium ions and to
phosphatidylinositol bisphosphate (PIP2) in their
presence (C2B). C2B also regulates also the recycling
step of synaptic vesicles. C2 domains fold into an
8-standed beta-sandwich that can adopt 2 structural
arrangements: Type I and Type II, distinguished by a
circular permutation involving their N- and C-terminal
beta strands. Many C2 domains are Ca2+-dependent
membrane-targeting modules that bind a wide variety of
substances including bind phospholipids, inositol
polyphosphates, and intracellular proteins. Most C2
domain proteins are either signal transduction enzymes
that contain a single C2 domain, such as protein kinase
C, or membrane trafficking proteins which contain at
least two C2 domains, such as synaptotagmin 1. However,
there are a few exceptions to this including RIM
isoforms and some splice variants of piccolo/aczonin and
intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions. This cd contains the second C2
repeat, C2B, and has a type-I topology.
Length = 136
Score = 28.2 bits (63), Expect = 4.9
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 76 SLCYSSAIEAATVKLPPAD--PTKEISGTRSEQRVKMNRM--RQRIAQR 120
SLCY TV + A P ++SG ++ VK+N ++RI+++
Sbjct: 7 SLCYQPTTNRLTVVVLKARHLPKMDVSGL-ADPYVKVNLYYGKKRISKK 54
>gnl|CDD|200448 cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-like domain found
in gelsolin, severin, villin, and related proteins.
Gelsolin repeats occur in gelsolin, severin, villin,
advillin, villidin, supervillin, flightless, quail,
fragmin, and other proteins, usually in several copies.
They co-occur with villin headpiece domains,
leucine-rich repeats, and several other domains. These
gelsolin-related actin binding proteins (GRABPs) play
regulatory roles in the assembly and disassembly of
actin filaments; they are involved in F-actin capping,
uncapping, severing, or the nucleation of actin
filaments. Severing of actin filaments is Ca2+
dependent. Villins are also linked to generating bundles
of F-actin with uniform filament polarity, which is most
likely mediated by their extra villin headpiece domain.
Many family members have also adopted functions in the
nucleus, including the regulation of transcription.
Supervillin, gelsolin, and flightless I are involved in
intracellular signaling via nuclear hormone receptors.
The gelsolin-like domain is distantly related to the
actin depolymerizing domains found in cofilin and
similar proteins.
Length = 98
Score = 27.2 bits (61), Expect = 5.6
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 299 ERPVAIK-GQVVVKPMMYVALTYDHRLIDGREAVLFLQK 336
ER A+K + ++ T R+ +G E+ LF K
Sbjct: 57 ERKAALKNAEEFLRKKKRPPYTQVTRVTEGGESALFKSK 95
>gnl|CDD|185471 PTZ00136, PTZ00136, eukaryotic translation initiation factor 6-like
protein; Provisional.
Length = 247
Score = 28.5 bits (64), Expect = 6.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 369 PVVNAVIEGTDIVYRDYVDISVAVATPKGLVVPVI 403
PVV+ I GT ++ R + V KGL+VP I
Sbjct: 47 PVVHTTIGGTRVIGR------LTVGNRKGLLVPSI 75
>gnl|CDD|147601 pfam05505, Ebola_NP, Ebola nucleoprotein. This family consists of
Ebola and Marburg virus nucleoproteins. These proteins
are responsible for encapsidation of genomic RNA. It has
been found that nucleoprotein DNA vaccines can offer
protection from the virus.
Length = 717
Score = 28.8 bits (64), Expect = 7.2
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 8/61 (13%)
Query: 254 NWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPM 313
+ + DG +T + SL PP R V+I GQ P+
Sbjct: 656 DEPVRFSTKDGKEYTYPD-----SLEEA---YPPWLTEKEALEEENRYVSIDGQQFDWPV 707
Query: 314 M 314
M
Sbjct: 708 M 708
>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein
[Function unknown].
Length = 294
Score = 28.5 bits (64), Expect = 7.7
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Query: 83 IEAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNV-NAMLTTFNEIDMSA 141
+E A L + KE+ E + K + ++I + EAQ M+ F E D
Sbjct: 147 LEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEAD--- 203
Query: 142 IIEFRK 147
E RK
Sbjct: 204 --ELRK 207
>gnl|CDD|218307 pfam04880, NUDE_C, NUDE protein, C-terminal conserved region. This
family represents the C-terminal conserved region of the
NUDE proteins. NUDE proteins are involved in nuclear
migration.
Length = 166
Score = 27.5 bits (60), Expect = 9.9
Identities = 19/78 (24%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Query: 25 VKAGQQLFKIKPTATSVVDWWSSPEEGSSAQSRGYSSSSSSSLCCCSSPSPSLCYSSAIE 84
V+ + K VV+ SSP + S S + SSP S
Sbjct: 49 VQERLRNNNRKSRPAPVVNLGSSPSTPHTNSSMNSPRSPPNGTV--SSPLTPPTKLSLTL 106
Query: 85 AATVKLPPADPTKEISGT 102
A+ PA P E S +
Sbjct: 107 ASATATDPAPPMSETSSS 124
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.133 0.388
Gapped
Lambda K H
0.267 0.0772 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,926,935
Number of extensions: 2148676
Number of successful extensions: 2264
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2229
Number of HSP's successfully gapped: 76
Length of query: 431
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 331
Effective length of database: 6,502,202
Effective search space: 2152228862
Effective search space used: 2152228862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)