RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14345
(431 letters)
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent
acyltransferase, CAT-like, alpha and beta (2 L mixed
beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP:
c.43.1.1 PDB: 1e2o_A 1c4t_A
Length = 233
Score = 351 bits (902), Expect = e-121
Identities = 119/234 (50%), Positives = 158/234 (67%), Gaps = 17/234 (7%)
Query: 103 RSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLG 162
RSE+RV M R+R+R+A+RL EA+N AMLTTFNE++M I++ RK + EAF+K++G++LG
Sbjct: 2 RSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLG 61
Query: 163 FMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVL 222
FMS ++KA AL+ P VNA I+G D+VY +Y D+S+ + PR GL++ VL
Sbjct: 62 FMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVST-----PR----GLVTPVL 112
Query: 223 VLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTP 282
+ L E+ A R L +ED GG FTI+NGGVFGSL+ TP
Sbjct: 113 RDVDTL-------GMADIEKKIKELAVKGRDG-KLTVEDLTGGNFTITNGGVFGSLMSTP 164
Query: 283 IINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQK 336
IINPPQSAILGMH +RP+A+ GQV + PMMY+AL+YDHRLIDGRE+V FL
Sbjct: 165 IINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVT 218
Score = 169 bits (430), Expect = 2e-50
Identities = 50/102 (49%), Positives = 74/102 (72%), Gaps = 1/102 (0%)
Query: 330 AVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDIS 389
++ L+K+ + EAF+K++G++LGFMS ++KA AL+ P VNA I+G D+VY +Y D+S
Sbjct: 40 PIMDLRKQ-YGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVS 98
Query: 390 VAVATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGKYT 431
+AV+TP+GLV PV+R+V+ + ADIE I L K R GK T
Sbjct: 99 MAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLT 140
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide
acetyltransferase; 2-oxoacid dehydrogenases
acyltransferase; 2.50A {Listeria monocytogenes}
Length = 256
Score = 325 bits (835), Expect = e-110
Identities = 73/260 (28%), Positives = 126/260 (48%), Gaps = 20/260 (7%)
Query: 88 VKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRK 147
+ L A PT + ++ + +N +R+ IA+ + ++ E+D + ++ +R
Sbjct: 1 MSLKAAMPTPPVRSAAGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRN 60
Query: 148 AHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNES 207
A ++F+K+ G L + + FIKA A AL++ P +N+ G I+ ++IS+ +
Sbjct: 61 AVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLNSTWAGDKIIEHANINISIAIA---- 116
Query: 208 NLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTF 267
L V+ + + K R + A R L+ D +GGTF
Sbjct: 117 -AGD----LLYVPVIKNADEKSIK-------GIAREISELAGKARNG-KLSQADMEGGTF 163
Query: 268 TISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDG 327
T+++ G FGS+ IIN PQ+AIL + +RPV I + V+ M+ + L+ DHR++DG
Sbjct: 164 TVNSTGSFGSVQSMGIINHPQAAILQVESIVKRPVIIDDMIAVRDMVNLCLSIDHRILDG 223
Query: 328 REAVLFLQ--KEAHLEAFQK 345
A FLQ K +E K
Sbjct: 224 LLAGKFLQAIKAN-VEKISK 242
Score = 153 bits (390), Expect = 3e-44
Identities = 33/91 (36%), Positives = 53/91 (58%)
Query: 341 EAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVV 400
++F+K+ G L + + FIKA A AL++ P +N+ G I+ ++IS+A+A L V
Sbjct: 64 DSFKKEEGYSLTYFAFFIKAVAQALKEFPQLNSTWAGDKIIEHANINISIAIAAGDLLYV 123
Query: 401 PVIRNVEAMNFADIELTIAALGEKARTGKYT 431
PVI+N + + I I+ L KAR GK +
Sbjct: 124 PVIKNADEKSIKGIAREISELAGKARNGKLS 154
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A
{Thermoplasma acidophilum dsm 1728}
Length = 224
Score = 257 bits (658), Expect = 2e-84
Identities = 57/236 (24%), Positives = 102/236 (43%), Gaps = 32/236 (13%)
Query: 101 GTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLK 160
E+ ++M+ +R+ I ++ +A+ + T E+D+++++ + K K
Sbjct: 2 APGREEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSA-----KARNRK 56
Query: 161 LGFMSPFIKASAYALQDQPVVNAVIEGTD--IVYRDYVDISVGMGRNESNLPRWCFNGLL 218
+ + L+ P +NA+ + T + + Y +I + + +GL
Sbjct: 57 VTVTGFLARIVPSILKQYPYLNAIYDETRRVYILKKYYNIGIAVDTP---------DGLN 107
Query: 219 SGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSL 278
V+ + S + A R N L +++ TFTI+N G G +
Sbjct: 108 VFVIKDADRK-------SMVEISAEISDKASRAREN-KLQLDEVQDSTFTITNVGTIGGI 159
Query: 279 LGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFL 334
+ TPIIN P+ AILG+H ER MY++L+ DHRLIDG A F+
Sbjct: 160 MSTPIINYPEVAILGVHRILEREGR--------KYMYLSLSCDHRLIDGAVATRFI 207
Score = 133 bits (337), Expect = 6e-37
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 344 QKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTD--IVYRDYVDISVAVATPKGLVVP 401
K K+ + L+ P +NA+ + T + + Y +I +AV TP GL V
Sbjct: 50 AKARNRKVTVTGFLARIVPSILKQYPYLNAIYDETRRVYILKKYYNIGIAVDTPDGLNVF 109
Query: 402 VIRNVEAMNFADIELTIAALGEKARTGKYT 431
VI++ + + +I I+ +AR K
Sbjct: 110 VIKDADRKSMVEISAEISDKASRARENKLQ 139
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; oxidoreductase, multienzyme complex;
HET: TPW; 2.35A {Bacillus stearothermophilus} PDB:
3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Length = 428
Score = 259 bits (663), Expect = 2e-82
Identities = 73/275 (26%), Positives = 121/275 (44%), Gaps = 54/275 (19%)
Query: 80 SSAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDM 139
+ A P A G E R KM+ +R+ IA+ + +++ +T +E D+
Sbjct: 173 PAPAAAEEKAAPAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADV 232
Query: 140 SAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVD 197
+ ++ RK +K G+KL F+ +KA AL++ PV+N I E +I+ + Y +
Sbjct: 233 TKLVAHRKKFKAIAAEK-GIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYN 291
Query: 198 ISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLN-WN 256
I + + GLL V+ +H DR +
Sbjct: 292 IGIAADTD---------RGLLVPVI-------------------KHA------DRKPIFA 317
Query: 257 LAIEDSD----------------GGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFER 300
LA E ++ G + TI+N G G TP+IN P+ AILG+ E+
Sbjct: 318 LAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEK 377
Query: 301 PVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQ 335
P+ G++V PM+ ++L++DHR+IDG A L
Sbjct: 378 PIVRDGEIVAAPMLALSLSFDHRMIDGATAQKALN 412
Score = 131 bits (331), Expect = 4e-34
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 338 AHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDISVAVATP 395
+A + G+KL F+ +KA AL++ PV+N I E +I+ + Y +I +A T
Sbjct: 240 KKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTD 299
Query: 396 KGLVVPVIRNVEAMNFADIELTIAALGEKARTGK 429
+GL+VPVI++ + + I L EKAR GK
Sbjct: 300 RGLLVPVIKHADRKPIFALAQEINELAEKARDGK 333
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics,
PSI-2, protein structure initiative; 2.00A
{Mycobacterium tuberculosis}
Length = 250
Score = 249 bits (638), Expect = 3e-81
Identities = 49/248 (19%), Positives = 92/248 (37%), Gaps = 26/248 (10%)
Query: 93 ADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEA 152
+ ++ + R+A+++ + E+ + ++ R
Sbjct: 2 SLAAARGGVGAGPDVRPVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRF--- 58
Query: 153 FQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI----EGTDIVYRDYVDISVGMGRNESN 208
++ + ++ AL+ ++N+ EG + V + G
Sbjct: 59 --VSAAPEITPFALTLRLLVIALKHNVILNSTWVDSGEGPQVHVHRGVHLGFGAA----- 111
Query: 209 LPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFT 268
R GLL V+ + + R L + G TFT
Sbjct: 112 TER----GLLVPVVTDAQDK-------NTRELASRVAELITGAREG-TLTPAELRGSTFT 159
Query: 269 ISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGR 328
+SN G G G P+IN P++AILG+ RPV + G+VV +P M + +DHR++DG
Sbjct: 160 VSNFGALGVDDGVPVINHPEAAILGLGAIKPRPVVVGGEVVARPTMTLTCVFDHRVVDGA 219
Query: 329 EAVLFLQK 336
+ F+ +
Sbjct: 220 QVAQFMCE 227
Score = 122 bits (309), Expect = 1e-32
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Query: 345 KKYGLKLGFMSPFIKASAYALQDQPVVNAVI----EGTDIVYRDYVDISVAVATPKGLVV 400
++ + ++ AL+ ++N+ EG + V + AT +GL+V
Sbjct: 59 VSAAPEITPFALTLRLLVIALKHNVILNSTWVDSGEGPQVHVHRGVHLGFGAATERGLLV 118
Query: 401 PVIRNVEAMNFADIELTIAALGEKARTGKYT 431
PV+ + + N ++ +A L AR G T
Sbjct: 119 PVVTDAQDKNTRELASRVAELITGAREGTLT 149
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase;
2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB:
1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A
1dpc_A
Length = 243
Score = 212 bits (541), Expect = 9e-67
Identities = 63/249 (25%), Positives = 106/249 (42%), Gaps = 21/249 (8%)
Query: 90 LPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAH 149
+PP P + + + V M R+ Q A L + +T F D++ + FR A
Sbjct: 1 IPPI-PPVDFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQ 59
Query: 150 LEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDISVGMGRNES 207
+K G+KL + +KA AY L++ P N+ + G ++ + YV I +
Sbjct: 60 KAVAEKA-GVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTP-- 116
Query: 208 NLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTF 267
+GLL V+ + + + E + L + G F
Sbjct: 117 -------DGLLVPVIRNVDQKSLLQL-----AAEAAELAEKARSK---KLGADAMQGACF 161
Query: 268 TISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDG 327
TIS+ G G TPI+N P+ AILG+ +PV + M+ ++L+YD R+I+G
Sbjct: 162 TISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDCRVING 221
Query: 328 REAVLFLQK 336
A F ++
Sbjct: 222 AAAARFTKR 230
Score = 115 bits (291), Expect = 4e-30
Identities = 38/99 (38%), Positives = 54/99 (54%), Gaps = 9/99 (9%)
Query: 340 LEAFQKKY-------GLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDISV 390
LEAF+ G+KL + +KA AY L++ P N+ + G ++ + YV I
Sbjct: 52 LEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGF 111
Query: 391 AVATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGK 429
AV TP GL+VPVIRNV+ + + A L EKAR+ K
Sbjct: 112 AVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKK 150
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid
dehydrogenase complex...; cubic core, HOMO trimer,
oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus}
PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Length = 262
Score = 202 bits (515), Expect = 2e-62
Identities = 57/277 (20%), Positives = 102/277 (36%), Gaps = 56/277 (20%)
Query: 80 SSAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDM 139
+ P +K ++ + + + + + A + +E+D+
Sbjct: 6 MPPPPKPKDRTIPIPISKPPVFIGKDRTEPVKGFHKAMVKTMSAALKI-PHFGYCDEVDL 64
Query: 140 SAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVD 197
+ +++ R+ + G+KL FM F+KA++ L P++NA + +I Y+ +
Sbjct: 65 TELVKLREELKPIAFAR-GIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHN 123
Query: 198 ISVGMGRNESNLPRWCFNGLL---------SGVLVLTEHLN--------GKYCVSSRPSY 240
I + M + GL+ + + LN G+
Sbjct: 124 IGIAM-----DTE----QGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQ--------- 165
Query: 241 ERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFER 300
L+ D GGTFT+SN G G P+I PP+ AI +
Sbjct: 166 ----------------LSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKAL 209
Query: 301 PV-AIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQK 336
P KG+V +M V+ + DHR+IDG F
Sbjct: 210 PRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNL 246
Score = 114 bits (288), Expect = 2e-29
Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 340 LEAFQKKY-------GLKLGFMSPFIKASAYALQDQPVVNAVI--EGTDIVYRDYVDISV 390
L +++ G+KL FM F+KA++ L P++NA + +I Y+ +I +
Sbjct: 67 LVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGI 126
Query: 391 AVATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGK 429
A+ T +GL+VP ++NV+ + +I + L + G+
Sbjct: 127 AMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQ 165
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central
beta-sheet surrounded by five alpha-helices; 8.80A {Homo
sapiens}
Length = 239
Score = 188 bits (479), Expect = 1e-57
Identities = 63/243 (25%), Positives = 101/243 (41%), Gaps = 21/243 (8%)
Query: 95 PTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQ 154
P T + ++ +R+ IAQRL +++ +++M ++ RK + +
Sbjct: 2 PGMAPVPTGVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILE 61
Query: 155 KKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNLPRWCF 214
+ K+ IKASA A P N+ T I VD+SV + P
Sbjct: 62 GRS--KISVNDFIIKASALACLKVPEANSSWMDTVIRQNHVVDVSVAVS-----TP---- 110
Query: 215 NGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGV 274
GL++ ++ + A R L + GGTFTISN G+
Sbjct: 111 AGLITPIVFNAHIK-------GVETIANDVVSLATKAREG-KLQPHEFQGGTFTISNLGM 162
Query: 275 FGSLLGTPIINPPQSAILGMHGTFERPVAIKGQ--VVVKPMMYVALTYDHRLIDGREAVL 332
FG + IINPPQ+ IL + + ++ V + V MM V L+ DHR++DG
Sbjct: 163 FGIKNFSAIINPPQACILAIGASEDKLVPADNEKGFDVASMMSVTLSCDHRVVDGAVGAQ 222
Query: 333 FLQ 335
+L
Sbjct: 223 WLA 225
Score = 107 bits (269), Expect = 4e-27
Identities = 30/82 (36%), Positives = 39/82 (47%)
Query: 348 GLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVVPVIRNVE 407
K+ IKASA A P N+ T I VD+SVAV+TP GL+ P++ N
Sbjct: 63 RSKISVNDFIIKASALACLKVPEANSSWMDTVIRQNHVVDVSVAVSTPAGLITPIVFNAH 122
Query: 408 AMNFADIELTIAALGEKARTGK 429
I + +L KAR GK
Sbjct: 123 IKGVETIANDVVSLATKAREGK 144
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid;
HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB:
1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Length = 219
Score = 74.0 bits (181), Expect = 2e-15
Identities = 29/217 (13%), Positives = 60/217 (27%), Gaps = 38/217 (17%)
Query: 132 TTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIV 191
++D++A ++ K + K F FI A + P ++ ++V
Sbjct: 34 NQTVQLDITAFLKTVKKN----------KHKFYPAFIHILARLMNAHPEFRMAMKDGELV 83
Query: 192 YRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYD 251
D V + ++ F+ L S Y E
Sbjct: 84 IWDSVHPCYTVFHEQTET----FSSLWSEYHDDFRQFLHIYSQDVACYGENLA------- 132
Query: 252 RLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVK 311
+ F +S + + PV G+ +
Sbjct: 133 -----YFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFFA--------PVFTMGKYYTQ 179
Query: 312 P---MMYVALTYDHRLIDGREAVLFLQK-EAHLEAFQ 344
+M +A+ H + DG L + + + + +Q
Sbjct: 180 GDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQ 216
Score = 56.6 bits (136), Expect = 2e-09
Identities = 11/89 (12%), Positives = 22/89 (24%)
Query: 341 EAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVV 400
+ K F FI A + P ++ ++V D V V +
Sbjct: 43 AFLKTVKKNKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTETF 102
Query: 401 PVIRNVEAMNFADIELTIAALGEKARTGK 429
+ + +F +
Sbjct: 103 SSLWSEYHDDFRQFLHIYSQDVACYGENL 131
>3cla_A Type III chloramphenicol acetyltransferase; transferase
(acyltransferase); HET: CLM; 1.75A {Escherichia coli}
SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A
1qca_A*
Length = 213
Score = 63.9 bits (155), Expect = 5e-12
Identities = 21/220 (9%), Positives = 53/220 (24%), Gaps = 37/220 (16%)
Query: 130 MLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTD 189
+ ++ID++ + + F I A A+ + I+ +
Sbjct: 27 GFSLTSKIDITTLKKSLDDS----------AYKFYPVMIYLIAQAVNQFDELRMAIKDDE 76
Query: 190 IVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWAC 249
++ D VD + E+ S + + Y
Sbjct: 77 LIVWDSVDPQFTVFHQETETFSALSCPYSSDI----DQFMVNYLSVMERYKSDTKL---- 128
Query: 250 YDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVV 309
+ IS + P+ +
Sbjct: 129 -------FPQGVTPENHLNISALPWVNFDSFNLNVANFTDYFA--------PIITMAKYQ 173
Query: 310 VKP---MMYVALTYDHRLIDGREAVLFLQK-EAHLEAFQK 345
+ ++ +++ H + DG F+ + + + K
Sbjct: 174 QEGDRLLLPLSVQVHHAVCDGFHVARFINRLQELCNSKLK 213
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI-
protein structure initiative, midwest center for
structural genomics; 2.30A {Bacteroides
thetaiotaomicron}
Length = 217
Score = 60.1 bits (145), Expect = 1e-10
Identities = 33/216 (15%), Positives = 62/216 (28%), Gaps = 32/216 (14%)
Query: 125 QNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAV 184
N L+ +E++ + KA F ++ A A + P
Sbjct: 24 HFQNPQLSITSEVECGGARQRAKAA----------GQSFFLHYLYAVLRAANEIPEFRYR 73
Query: 185 IEGTD-IVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERH 243
I+ +V D +D+ + E+ + + +R +
Sbjct: 74 IDPDGRVVLYDTIDMLSPIKIKENGKFFTT-------RFPYHNDFD-TFYQEARLIIDAI 125
Query: 244 TTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVA 303
N + D D G +S T P+
Sbjct: 126 PE--DGDPYAAENEEVADGDYGLILLSATPDLYFTSITGTQEKRSG--------NNYPLL 175
Query: 304 IKGQVVV---KPMMYVALTYDHRLIDGREAVLFLQK 336
G+ ++ + +M +A+T H IDG LF +K
Sbjct: 176 NAGKAIIREGRLVMPIAMTIHHGFIDGHHLSLFYKK 211
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A
{Mycobacterium smegmatis}
Length = 1113
Score = 43.0 bits (102), Expect = 2e-04
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 364 ALQDQPVVN---AVIEGT-DIVYRDYVDISVAVATPKG-----LVVPVIRNVEAMNFADI 414
A++ P +N AV++G + + ++ +A+ LVV I+ E M F
Sbjct: 54 AVKKFPNMNRHFAVVDGKPTAITPAHTNLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQF 113
Query: 415 ELTIAALGEKARTGKYT 431
+ +AR GK T
Sbjct: 114 IAAYEDIVRRARDGKLT 130
Score = 42.6 bits (101), Expect = 2e-04
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 247 WACYDRL-----NWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERP 301
A Y+ + + L ED G T +++N G G++ P + Q AI+G G E P
Sbjct: 114 IAAYEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHSVPRLMQGQGAIIGA-GAMEYP 172
Query: 302 VAIKG-------QVVVKPMMYVALTYDHRLIDGREAVLFLQ 335
+G + + ++ + TYDHR+I G E+ FL+
Sbjct: 173 AEFQGASEERIADLGIGKLITLTSTYDHRIIQGAESGDFLR 213
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 0.001
Identities = 85/501 (16%), Positives = 138/501 (27%), Gaps = 170/501 (33%)
Query: 27 AGQQL---F-KIKPTATSVVDWWSSPEEGSSAQ---SR--GYSSSSSSSLCCCSSPSPSL 77
QL F KI P T + +++ +E ++ + GY SS L
Sbjct: 29 IASQLQEQFNKILPEPT---EGFAADDEPTTPAELVGKFLGYVSSLVEPSKV-GQFDQVL 84
Query: 78 ---------CY--SSAIEAATVKLPPADPTKEISGT---RS--EQRVKMNRMRQRIAQR- 120
CY + I A KL + T + ++ R+ R + +
Sbjct: 85 NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 121 -LKEAQNVNAMLTT-----------FNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFI 168
+ NA L F E L + Y + I
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYFEE-------------LRDLYQTYH---VLVGDLI 188
Query: 169 KASAYALQD---QPVVNAVI--EGTDIV-------------YRDYVDISV---------- 200
K SA L + + + +G +I+ Y + IS
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH 248
Query: 201 ------GMGRNESNLPRW------CFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTT--- 245
+G L + GL++ V + S S+
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE--------TDSWESFFVSVRKAI 300
Query: 246 ------GWAC---YDRLN-WNLAIEDSDGGTFTISNGGVFGSLLGTP-----IINPPQSA 290
G C Y + +EDS + N G P I N Q
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDS------LENNE------GVPSPMLSISNLTQEQ 348
Query: 291 ILGMHGTFERPVAIKGQVVVKPMMYVAL--TYDHRLIDG-----REAVLFLQK---EAHL 340
+ + QV ++L + ++ G L L+K + L
Sbjct: 349 VQDYVNKTNSHLPAGKQV------EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 341 EA----F-QKKYGLKLGFM---SPF-----IKASAYALQDQPVVNAVIEGTDI---VY-- 382
+ F ++K F+ SPF + AS +D N DI VY
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT 462
Query: 383 RDYVDISVAVATPKGLVVPVI 403
D D+ V + +V I
Sbjct: 463 FDGSDLRVLSGSISERIVDCI 483
Score = 39.6 bits (92), Expect = 0.002
Identities = 41/249 (16%), Positives = 70/249 (28%), Gaps = 101/249 (40%)
Query: 199 SVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLA 258
GMG + Y+ A + WN A
Sbjct: 1628 EQGMGMDL---------------------------------YKTSKA--A---QDVWNRA 1649
Query: 259 IEDSDGGTFTISNGGVFGSLLGTPII--NPPQSAILGMHGTFERPVAIKGQVVVKPMMYV 316
D+ G F S+L I+ NP I F KG+ + Y
Sbjct: 1650 --DN----HFKDTYG-F-SILD--IVINNPVNLTIH-----FGGE---KGKRIR--ENYS 1689
Query: 317 ALTYDHRLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSP--FIKASAYALQDQP---VV 371
A+ ++ ++DG+ + KE + + F S + A+ + QP ++
Sbjct: 1690 AMIFET-IVDGKLKTEKIFKEINEHS------TSYTFRSEKGLLSATQFT---QPALTLM 1739
Query: 372 N-AVIEGTDIVYRDYVDISVAVATPKG--------LVVPVIRNVEAMNFAD-IELTIAAL 421
A E D+ + + A G L + M+ +E+
Sbjct: 1740 EKAAFE--DLKSKGLIPADATFA---GHSLGEYAALASL----ADVMSIESLVEVV---- 1786
Query: 422 GEKARTGKY 430
R G
Sbjct: 1787 --FYR-GMT 1792
Score = 36.2 bits (83), Expect = 0.024
Identities = 59/287 (20%), Positives = 82/287 (28%), Gaps = 97/287 (33%)
Query: 16 LASLEDGATVKAGQQLFKIKPTATSVVDWWSSPEE------------GSSAQSRGYSSSS 63
L S GAT Q L + A + D W S G Y ++S
Sbjct: 263 LRSYLKGATGH-SQGL--VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY-EAYPNTS 318
Query: 64 SSSLCCCSS-------PSPSLCYS--------SAIEAATVKLPPADPTKEIS---GTRSE 105
S PSP L S + LP EIS G +
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV-EISLVNGAK-- 375
Query: 106 QRV------KMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGL 159
V + + + ++ K ++ F+E RK F ++ L
Sbjct: 376 NLVVSGPPQSLYGLNLTL-RKAKAPSGLDQSRIPFSE---------RKL---KFSNRF-L 421
Query: 160 KLG--FMSPFIK-ASAYALQDQPVVNAVIEGTDI---VY--RDYVDISVGMGRNESN--- 208
+ F S + AS +D N DI VY D D+ R S
Sbjct: 422 PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL-----RVLSGSIS 476
Query: 209 ---------LP-RW------------CFN-GLLSGVLVLTEH-LNGK 231
LP +W F G SG+ VLT +G
Sbjct: 477 ERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT 523
Score = 33.5 bits (76), Expect = 0.18
Identities = 50/287 (17%), Positives = 87/287 (30%), Gaps = 105/287 (36%)
Query: 149 HLEAFQKKYGLKLGFMSPFIKAS-AYALQDQPVVNAVIEGTDIVYR--DYVDISVGMGRN 205
A Q L+ F + + +A D+P E +V + YV V
Sbjct: 27 FFIASQ----LQEQFNKILPEPTEGFAADDEPT--TPAE---LVGKFLGYVSSLV----E 73
Query: 206 ESNLPRWCFNGLLSGVLVLTE----HLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIE- 260
S + + F+ +L+ L LTE +L G + H LA +
Sbjct: 74 PSKVGQ--FDQVLN--LCLTEFENCYLEGN---------DIHA------------LAAKL 108
Query: 261 DSDGGTFTISNGGVFGS------LLGTPIINPPQSAIL-----GMHGTFERPVAI-KGQV 308
+ T + + + + P SA+ G AI GQ
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV----AIFGGQ- 163
Query: 309 VVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQD- 367
G F +E L + Y + IK SA L +
Sbjct: 164 ------------------GNTDDYF--EE--LRDLYQTYH---VLVGDLIKFSAETLSEL 198
Query: 368 --QPVVNAVI--EGTDIVY----------RDYVDISVAVATPK-GLV 399
+ + +G +I+ +DY+ S+ ++ P G++
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL-SIPISCPLIGVI 244
Score = 30.0 bits (67), Expect = 1.8
Identities = 25/174 (14%), Positives = 54/174 (31%), Gaps = 61/174 (35%)
Query: 6 LKQNNKKFLLLASLEDGATVKAGQQLFK-IKPTATSVVDWWSSPEEG----SSAQ----- 55
+++N ++ ++ DG +++FK I +TS + S + Q
Sbjct: 1684 IRENYSA-MIFETIVDGKLKT--EKIFKEINEHSTSYT--FRSEKGLLSATQFTQPALTL 1738
Query: 56 ----------SRGYSSSSS----------SSLCCCSSPSPSLCYSSAIEAATVK-----L 90
S+G + + ++L + + S +E V +
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLAD---VMSIESLVE--VVFYRGMTM 1793
Query: 91 PPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIE 144
A P R E M A N + +F++ + ++E
Sbjct: 1794 QVAVP-------RDELGRSNYGM---------IAINPGRVAASFSQEALQYVVE 1831
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.2 bits (85), Expect = 0.003
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 16/44 (36%)
Query: 335 QKEA--HLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIE 376
+K+A L+A K Y + SA AL + A +E
Sbjct: 18 EKQALKKLQASLKLY-------AD---DSAPAL----AIKATME 47
Score = 36.5 bits (83), Expect = 0.005
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 16/43 (37%)
Query: 144 EFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIE 186
+K L+A K Y + SA AL + A +E
Sbjct: 21 ALKK--LQASLKLY-------AD---DSAPAL----AIKATME 47
Score = 27.6 bits (60), Expect = 4.6
Identities = 14/78 (17%), Positives = 21/78 (26%), Gaps = 49/78 (62%)
Query: 7 KQNNKKFLLLASLEDGATVKAGQQLFKIKPTATSVVDWWSSPEEGSSAQSRGYSSSSSSS 66
KQ KK L ASL +L+ + + SA
Sbjct: 19 KQALKK--LQASL----------KLY--------------ADD---SA------------ 37
Query: 67 LCCCSSPSPSLCYSSAIE 84
P+L + +E
Sbjct: 38 --------PALAIKATME 47
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 33.7 bits (77), Expect = 0.14
Identities = 31/230 (13%), Positives = 55/230 (23%), Gaps = 32/230 (13%)
Query: 49 EEGSSAQSRG---YSSSSSSSLCC----CSSPSPSLCYSSAIEAATVKLPPADPTKEISG 101
+ A G Y + ++ S P+P + + A P +
Sbjct: 1189 MQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKYASPNLNMKY 1248
Query: 102 TRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAF-------- 153
+ R + R Q E + + D + + R +
Sbjct: 1249 RK---RQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREIHNEAESQLRAA 1305
Query: 154 QKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGR-NESNLPRW 212
Q+++G P I AL + D+ + S NES
Sbjct: 1306 QQQWGNDFYKRDPRIAPLRGALAT-----YGLTIDDLGVASFHGTSTKANDKNESATINE 1360
Query: 213 CFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWN-LAIED 261
L N + H G A +N +
Sbjct: 1361 MMKHLGR------SEGN-PVIGVFQKFLTGHPKGAAGAWMMNGALQILNS 1403
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Length = 116
Score = 31.4 bits (72), Expect = 0.19
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 20 EDGATVKAGQQLFKIKP 36
+ G VK GQ LF I+
Sbjct: 18 KAGDKVKKGQTLFIIEQ 34
>3hh0_A Transcriptional regulator, MERR family; protein structure
initiative II(PSI II), NYSGXRC, 11183J, structural
genomics; 2.67A {Bacillus cereus atcc 14579}
Length = 146
Score = 31.2 bits (71), Expect = 0.26
Identities = 10/69 (14%), Positives = 23/69 (33%)
Query: 92 PADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLE 151
T+ QR + ++RIA+ L + ++++ F + +
Sbjct: 74 RDIETEVFLRQMHFQREVLLAEQERIAKVLSHMDEMTKKFQKEERVNVALFSSFLQTFIW 133
Query: 152 AFQKKYGLK 160
+ K G
Sbjct: 134 EKENKEGHH 142
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain,
beta barrel, transport prote; 2.71A {Escherichia coli}
Length = 277
Score = 31.8 bits (73), Expect = 0.39
Identities = 6/17 (35%), Positives = 13/17 (76%)
Query: 20 EDGATVKAGQQLFKIKP 36
++G+ ++AG L++I P
Sbjct: 39 KEGSDIEAGVSLYQIDP 55
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel,
membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP:
f.46.1.1 PDB: 2v4d_A 1t5e_A
Length = 369
Score = 31.9 bits (73), Expect = 0.42
Identities = 10/17 (58%), Positives = 15/17 (88%)
Query: 20 EDGATVKAGQQLFKIKP 36
++G+ VKAGQQL++I P
Sbjct: 60 KEGSDVKAGQQLYQIDP 76
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 2.9
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 18/59 (30%)
Query: 103 RSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKL 161
R EQR +R+ + +A + ++ E K LE + ++ ++
Sbjct: 91 REEQR-------KRLQE--LDAAS---------KVMEQEWREKAKKDLEEWNQRQSEQV 131
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 2.9
Identities = 22/182 (12%), Positives = 49/182 (26%), Gaps = 53/182 (29%)
Query: 249 CYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQV 308
C D ++D + ++ + S L + T K +
Sbjct: 35 CKD-------VQDMPKSILSKE---EIDHIIMSK---DAVSGTLRLFWTLLS----KQEE 77
Query: 309 VVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAFQKKYGLKLGFMSPFIKASAY----- 363
+V+ + L +++ + Q + ++ F K +
Sbjct: 78 MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137
Query: 364 -----AL-QDQPVVNAVIEGTDIVYRDYVDISVAVATPKG-----LVVPVIRN---VEAM 409
AL + +P N +I+G G + + V + M
Sbjct: 138 LKLRQALLELRPAKNVLIDG-----------------VLGSGKTWVALDVCLSYKVQCKM 180
Query: 410 NF 411
+F
Sbjct: 181 DF 182
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 28.0 bits (62), Expect = 6.6
Identities = 14/103 (13%), Positives = 27/103 (26%), Gaps = 19/103 (18%)
Query: 17 ASLEDGATVKAGQQLFKIKPTATSVVDWWSSPEEGSSAQSRGYSSSSSSSLCCCSSPSPS 76
+ KAG + ++ + +WW G A G+ +S L
Sbjct: 41 TMDDQELGFKAGD-VIEV--MDATNREWW----WGRVADGEGWFPASFVRLRVNQDEPAD 93
Query: 77 LCYSSAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQ 119
P +E + ++MR +
Sbjct: 94 DD------------APLAGNSGAEDGGAEAQSSKDQMRTNVIN 124
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.388
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,647,945
Number of extensions: 414452
Number of successful extensions: 1131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1108
Number of HSP's successfully gapped: 50
Length of query: 431
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 335
Effective length of database: 4,021,377
Effective search space: 1347161295
Effective search space used: 1347161295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.7 bits)