RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14345
(431 letters)
>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase
{Escherichia coli [TaxId: 562]}
Length = 233
Score = 201 bits (512), Expect = 4e-63
Identities = 116/234 (49%), Positives = 155/234 (66%), Gaps = 17/234 (7%)
Query: 103 RSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLG 162
RSE+RV M R+R+R+A+RL EA+N AMLTTFNE++M I++ RK + EAF+K++G++LG
Sbjct: 2 RSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLG 61
Query: 163 FMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVL 222
FMS ++KA AL+ P VNA I+G D+VY +Y D+S+ + GL++ VL
Sbjct: 62 FMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTP---------RGLVTPVL 112
Query: 223 VLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTP 282
+ E+ A R L +ED GG FTI+NGGVFGSL+ TP
Sbjct: 113 RDVDT-------LGMADIEKKIKELAVKGRDG-KLTVEDLTGGNFTITNGGVFGSLMSTP 164
Query: 283 IINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQK 336
IINPPQSAILGMH +RP+A+ GQV + PMMY+AL+YDHRLIDGRE+V FL
Sbjct: 165 IINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVT 218
Score = 79.2 bits (195), Expect = 2e-17
Identities = 52/139 (37%), Positives = 85/139 (61%), Gaps = 8/139 (5%)
Query: 299 ERPVAIKG--QVVVKPMMY----VALTYDHRLIDGREAVLFLQKEAHLEAFQKKYGLKLG 352
E+ V + + V + ++ A+ ++ + + ++ + EAF+K++G++LG
Sbjct: 4 EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQ--YGEAFEKRHGIRLG 61
Query: 353 FMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGLVVPVIRNVEAMNFA 412
FMS ++KA AL+ P VNA I+G D+VY +Y D+S+AV+TP+GLV PV+R+V+ + A
Sbjct: 62 FMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMA 121
Query: 413 DIELTIAALGEKARTGKYT 431
DIE I L K R GK T
Sbjct: 122 DIEKKIKELAVKGRDGKLT 140
>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 242
Score = 149 bits (376), Expect = 6e-43
Identities = 62/245 (25%), Positives = 112/245 (45%), Gaps = 32/245 (13%)
Query: 100 SGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGL 159
G E R KM+ +R+ IA+ + +++ +T +E D++ ++ RK +A + G+
Sbjct: 9 EGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKF-KAIAAEKGI 67
Query: 160 KLGFMSPFIKASAYALQDQPVVNAVIEGT--DIVYRDYVDISVGMGRNESNLPRWCFNGL 217
KL F+ +KA AL++ PV+N I+ +I+ + Y +I + +
Sbjct: 68 KLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTD------------ 115
Query: 218 LSGVLVLTEHLNGKYCVSSRPSYERHTTG-WACYDRL-----NWNLAIEDSDGGTFTISN 271
G + + + + L + L + G + TI+N
Sbjct: 116 -----------RGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITN 164
Query: 272 GGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAV 331
G G TP+IN P+ AILG+ E+P+ G++V PM+ ++L++DHR+IDG A
Sbjct: 165 IGSAGGQWFTPVINHPEVAILGIGRIAEKPIVRDGEIVAAPMLALSLSFDHRMIDGATAQ 224
Query: 332 LFLQK 336
L
Sbjct: 225 KALNH 229
Score = 52.5 bits (125), Expect = 2e-08
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 333 FLQKEAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGT--DIVYRDYVDISV 390
+ +A + G+KL F+ +KA AL++ PV+N I+ +I+ + Y +I +
Sbjct: 51 LVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGI 110
Query: 391 AVATPKGLVVPVIRNVEAMNFADIELTIAALGEKARTGKYT 431
A T +GL+VPVI++ + + I L EKAR GK T
Sbjct: 111 AADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLT 151
>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase
{Azotobacter vinelandii [TaxId: 354]}
Length = 243
Score = 143 bits (361), Expect = 7e-41
Identities = 62/247 (25%), Positives = 104/247 (42%), Gaps = 17/247 (6%)
Query: 90 LPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMSAIIEFRKAH 149
+PP P + + + V M R+ Q A L + +T F D++ + FR A
Sbjct: 1 IPPI-PPVDFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQ 59
Query: 150 LEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVGMGRNESNL 209
+A +K G+KL + +KA AY L++ P N+ + + + +G + +
Sbjct: 60 -KAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPD- 117
Query: 210 PRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHTTGWACYDRLNWNLAIEDSDGGTFTI 269
GLL V+ + + A R L + G FTI
Sbjct: 118 ------GLLVPVIRNVDQKSLLQL-------AAEAAELAEKARSKK-LGADAMQGACFTI 163
Query: 270 SNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGRE 329
S+ G G TPI+N P+ AILG+ +PV + M+ ++L+YD R+I+G
Sbjct: 164 SSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDCRVINGAA 223
Query: 330 AVLFLQK 336
A F ++
Sbjct: 224 AARFTKR 230
>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT
{Escherichia coli [TaxId: 562]}
Length = 213
Score = 114 bits (286), Expect = 2e-30
Identities = 20/216 (9%), Positives = 56/216 (25%), Gaps = 38/216 (17%)
Query: 125 QNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAV 184
+ + ++ID++ + + F I A A+ +
Sbjct: 22 HRLPCGFSLTSKIDITTLKKSLDDS----------AYKFYPVMIYLIAQAVNQFDELRMA 71
Query: 185 IEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLN-GKYCVSSRPSYERH 243
I+ +++ D VD + E L + ++ V+ ER+
Sbjct: 72 IKDDELIVWDSVDPQFTVFHQE---------TETFSALSCPYSSDIDQFMVNYLSVMERY 122
Query: 244 TTGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVA 303
+ ++ + + P+
Sbjct: 123 KSD---------TKLFPQGVTPENHLNISA-LPWVNFDSFNLNVANFTDYF-----APII 167
Query: 304 IKGQVVV---KPMMYVALTYDHRLIDGREAVLFLQK 336
+ + ++ +++ H + DG F+ +
Sbjct: 168 TMAKYQQEGDRLLLPLSVQVHHAVCDGFHVARFINR 203
Score = 90.0 bits (223), Expect = 2e-21
Identities = 12/91 (13%), Positives = 29/91 (31%), Gaps = 2/91 (2%)
Query: 339 HLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGL 398
L+ K F I A A+ + I+ +++ D VD V +
Sbjct: 38 TLKKSLDDSAYK--FYPVMIYLIAQAVNQFDELRMAIKDDELIVWDSVDPQFTVFHQETE 95
Query: 399 VVPVIRNVEAMNFADIELTIAALGEKARTGK 429
+ + + + ++ E+ ++
Sbjct: 96 TFSALSCPYSSDIDQFMVNYLSVMERYKSDT 126
>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT
{Escherichia coli [TaxId: 562]}
Length = 214
Score = 112 bits (282), Expect = 1e-29
Identities = 28/224 (12%), Positives = 59/224 (26%), Gaps = 38/224 (16%)
Query: 125 QNVNAMLTTFNEIDMSAIIEFRKAHLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAV 184
++D++A ++ K + K F FI A + P
Sbjct: 23 SVAQCTYNQTVQLDITAFLKTVKKN----------KHKFYPAFIHILARLMNAHPEFRMA 72
Query: 185 IEGTDIVYRDYVDISVGMGRNESNLPRWCFNGLLSGVLVLTEHLNGKYCVSSRPSYERHT 244
++ ++V D V + + L H + +
Sbjct: 73 MKDGELVIWDSVHPCYTVFHEQ---------TETFSSLWSEYHDD-------FRQFLHIY 116
Query: 245 TGWACYDRLNWNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAI 304
+ N + F +S + + PV
Sbjct: 117 SQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFFA--------PVFT 168
Query: 305 KGQVVV---KPMMYVALTYDHRLIDGREAVLFLQK-EAHLEAFQ 344
G+ K +M +A+ H + DG L + + + + +Q
Sbjct: 169 MGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQ 212
Score = 86.5 bits (214), Expect = 3e-20
Identities = 13/91 (14%), Positives = 23/91 (25%), Gaps = 2/91 (2%)
Query: 339 HLEAFQKKYGLKLGFMSPFIKASAYALQDQPVVNAVIEGTDIVYRDYVDISVAVATPKGL 398
KK K F FI A + P ++ ++V D V V +
Sbjct: 39 AFLKTVKKNKHK--FYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTE 96
Query: 399 VVPVIRNVEAMNFADIELTIAALGEKARTGK 429
+ + +F +
Sbjct: 97 TFSSLWSEYHDDFRQFLHIYSQDVACYGENL 127
>d1sxje1 a.80.1.1 (E:256-354) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 99
Score = 30.5 bits (69), Expect = 0.11
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 11/41 (26%)
Query: 303 AIKGQVVVKPMMYVALTYDHRLIDGREAVLFLQKEAHLEAF 343
K ++ + +D RL G +A+ HLE F
Sbjct: 61 TNKSSII-----EYSSVFDERLSLGNKAIF------HLEGF 90
>d1fwoa_ g.3.16.1 (A:) Oryzain beta chain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 35
Score = 25.9 bits (57), Expect = 1.1
Identities = 4/22 (18%), Positives = 7/22 (31%)
Query: 59 YSSSSSSSLCCCSSPSPSLCYS 80
S + S C + +L
Sbjct: 7 NFSCPAGSTCSSAFGFRNLSLV 28
>d2bjqa2 b.169.1.1 (A:5-174) Sperm motility protein MFP2 {Pig
roundworm (Ascaris suum), isoform A [TaxId: 6253]}
Length = 170
Score = 26.7 bits (59), Expect = 4.4
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 299 ERPVAIKGQVVVKPMMYVALTYDH-RLIDGR 328
+ PV +KGQ MYVAL Y + I GR
Sbjct: 17 DNPVRVKGQ----QNMYVALWYKFGKPIHGR 43
>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 237
Score = 27.0 bits (58), Expect = 4.9
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 20 EDGATVKAGQQLFKIKPT 37
++G+ VKAGQQL++I P
Sbjct: 32 KEGSDVKAGQQLYQIDPA 49
>d2bjra1 b.169.1.1 (A:6-184) Sperm motility protein MFP2 {Pig
roundworm (Ascaris suum), isoform B [TaxId: 6253]}
Length = 179
Score = 26.3 bits (58), Expect = 4.9
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 4/24 (16%)
Query: 299 ERPVAIKGQVVVKPMMYVALTYDH 322
+ PV GQ MYVAL Y +
Sbjct: 17 DNPVKALGQ----QNMYVALWYKN 36
>d1alna2 c.97.1.1 (A:151-294) Two-domain cytidine deaminase
{Escherichia coli [TaxId: 562]}
Length = 144
Score = 25.6 bits (56), Expect = 7.3
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 258 AIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVV 310
A+E DG F+ G + P + P Q A++ ++ I+ V+
Sbjct: 64 ALECKDGRIFS---GSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLA 113
>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Azotobacter vinelandii [TaxId: 354]}
Length = 79
Score = 24.8 bits (54), Expect = 7.4
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 20 EDGATVKAGQQLFKIKPTATS 40
+ G +K G + +++P A +
Sbjct: 58 KLGDKLKEGDAIIELEPAAGA 78
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.388
Gapped
Lambda K H
0.267 0.0601 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,596,753
Number of extensions: 75877
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 18
Length of query: 431
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 343
Effective length of database: 1,199,356
Effective search space: 411379108
Effective search space used: 411379108
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.9 bits)