BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14347
         (316 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1M1G|A Chain A, Crystal Structure Of Aquifex Aeolicus N-Utilization
           Substance G (Nusg), Space Group P2(1)
 pdb|1M1G|B Chain B, Crystal Structure Of Aquifex Aeolicus N-Utilization
           Substance G (Nusg), Space Group P2(1)
 pdb|1M1G|C Chain C, Crystal Structure Of Aquifex Aeolicus N-Utilization
           Substance G (Nusg), Space Group P2(1)
 pdb|1M1G|D Chain D, Crystal Structure Of Aquifex Aeolicus N-Utilization
           Substance G (Nusg), Space Group P2(1)
 pdb|1M1H|A Chain A, Crystal Structure Of Aquifex Aeolicus N-Utilization
           Substance G (Nusg), Space Group I222
 pdb|1NPP|A Chain A, Crystal Structure Of Aquifex Aeolicus Nusg In P2(1)
 pdb|1NPP|B Chain B, Crystal Structure Of Aquifex Aeolicus Nusg In P2(1)
 pdb|1NPP|C Chain C, Crystal Structure Of Aquifex Aeolicus Nusg In P2(1)
 pdb|1NPP|D Chain D, Crystal Structure Of Aquifex Aeolicus Nusg In P2(1)
 pdb|1NPR|A Chain A, Crystal Structure Of Aquifex Aeolicus Nusg In C222(1)
          Length = 248

 Score = 31.6 bits (70), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 172 PIETIQSKSNIMDYELPSDVKLFSGFVFVSSPHRHYTSKWYISLQEYPYHLWPPYVTAGS 231
           P + I  K N  + ++  D K+F G++ + +   H   K  +++++ P H++ P +  G 
Sbjct: 113 PGQKITCKENKTEAKIVLDNKIFPGYILIKA---HMNDKLLMAIEKTP-HVFRPVMVGGK 168

Query: 232 YVVSRE 237
            V  +E
Sbjct: 169 PVPLKE 174


>pdb|2Y7C|B Chain B, Atomic Model Of The Ocr-Bound Methylase Complex From The
           Type I Restriction-Modification Enzyme Ecoki (M2s1).
           Based On Fitting Into Em Map 1534.
 pdb|2Y7C|C Chain C, Atomic Model Of The Ocr-Bound Methylase Complex From The
           Type I Restriction-Modification Enzyme Ecoki (M2s1).
           Based On Fitting Into Em Map 1534.
 pdb|2Y7H|B Chain B, Atomic Model Of The Dna-Bound Methylase Complex From The
           Type I Restriction-Modification Enzyme Ecoki (M2s1).
           Based On Fitting Into Em Map 1534.
 pdb|2Y7H|C Chain C, Atomic Model Of The Dna-Bound Methylase Complex From The
           Type I Restriction-Modification Enzyme Ecoki (M2s1).
           Based On Fitting Into Em Map 1534
          Length = 529

 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 224 PPYVTAGSYVVSREVLLDFYFASHFTKHFRFDDIYLGILAKKTNTEPFHCGEFY 277
           P  +TA   +VS    LD+Y  +H      F D+Y G+L K  N      G+++
Sbjct: 100 PKQITA---LVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150


>pdb|2AR0|A Chain A, Crystal Structure Of Type I Restriction Enzyme Ecoki M
           Protein (Ec 2.1.1.72) (M.Ecoki)
 pdb|2AR0|B Chain B, Crystal Structure Of Type I Restriction Enzyme Ecoki M
           Protein (Ec 2.1.1.72) (M.Ecoki)
          Length = 541

 Score = 30.0 bits (66), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 224 PPYVTAGSYVVSREVLLDFYFASHFTKHFRFDDIYLGILAKKTNTEPFHCGEFY 277
           P  +TA   +VS    LD+Y  +H      F D Y G+L K  N      G+++
Sbjct: 102 PKQITA---LVSNXDSLDWYNGAHGKSRDDFGDXYEGLLQKNANETKSGAGQYF 152


>pdb|2RAU|A Chain A, Crystal Structure Of A Putative Lipase (Np_343859.1) From
           Sulfolobus Solfataricus At 1.85 A Resolution
          Length = 354

 Score = 27.7 bits (60), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 59  ERRLAIRQSWGYEKRFSDVPIVTVFILGYDPDNEGLQIEIAEESERYNDIVQAKFIDSYF 118
           +R+L+   +WG+    SD+  V  FI       +  Q  I    E +  I    +   Y+
Sbjct: 112 DRQLSFTANWGWSTWISDIKEVVSFI-----KRDSGQERIYLAGESFGGIAALNYSSLYW 166

Query: 119 NNTIKTMM 126
            N IK ++
Sbjct: 167 KNDIKGLI 174


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.139    0.441 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,464,919
Number of Sequences: 62578
Number of extensions: 444627
Number of successful extensions: 825
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 819
Number of HSP's gapped (non-prelim): 8
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)