Query psy14347
Match_columns 316
No_of_seqs 171 out of 1170
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 17:33:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14347.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14347hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2287|consensus 100.0 1E-60 2.2E-65 454.7 28.3 264 22-313 75-340 (349)
2 PLN03133 beta-1,3-galactosyltr 100.0 3.2E-58 7E-63 457.7 27.0 271 8-315 352-629 (636)
3 PF01762 Galactosyl_T: Galacto 100.0 1.7E-53 3.7E-58 374.8 17.9 194 59-274 1-195 (195)
4 PLN03193 beta-1,3-galactosyltr 100.0 1E-51 2.3E-56 390.6 23.2 218 43-289 137-364 (408)
5 KOG2288|consensus 100.0 1.9E-37 4.1E-42 273.8 16.1 210 43-278 9-225 (274)
6 PTZ00210 UDP-GlcNAc-dependent 100.0 2E-34 4.3E-39 269.4 20.0 223 43-310 78-355 (382)
7 PF02434 Fringe: Fringe-like; 99.9 1.5E-21 3.2E-26 178.4 11.4 212 46-299 7-233 (252)
8 KOG2246|consensus 99.7 2.2E-16 4.7E-21 150.7 12.2 169 42-273 88-268 (364)
9 PLN03153 hypothetical protein; 99.4 1.4E-12 2.9E-17 127.3 14.2 203 45-299 122-344 (537)
10 KOG3708|consensus 98.2 1.9E-05 4E-10 77.1 11.9 198 45-311 26-244 (681)
11 PF01755 Glyco_transf_25: Glyc 96.1 0.11 2.4E-06 45.3 12.0 101 49-160 4-107 (200)
12 PF13641 Glyco_tranf_2_3: Glyc 96.0 0.1 2.2E-06 45.8 11.3 188 46-272 2-201 (228)
13 TIGR03472 HpnI hopanoid biosyn 95.6 0.37 8E-06 46.4 14.2 190 46-271 42-243 (373)
14 cd02520 Glucosylceramide_synth 95.5 1.2 2.6E-05 38.3 15.8 136 79-272 31-168 (196)
15 cd04186 GT_2_like_c Subfamily 95.4 0.57 1.2E-05 38.2 13.0 86 137-275 74-159 (166)
16 cd06433 GT_2_WfgS_like WfgS an 95.0 0.78 1.7E-05 38.6 13.1 123 126-274 65-187 (202)
17 cd04196 GT_2_like_d Subfamily 95.0 0.45 9.8E-06 40.8 11.6 172 62-267 11-190 (214)
18 PF04646 DUF604: Protein of un 94.5 0.11 2.4E-06 47.3 6.5 71 228-298 12-92 (255)
19 TIGR03469 HonB hopene-associat 94.4 2.6 5.6E-05 40.8 16.3 163 79-270 71-251 (384)
20 cd02525 Succinoglycan_BP_ExoA 94.3 3.4 7.3E-05 36.2 15.9 163 78-275 31-202 (249)
21 cd06435 CESA_NdvC_like NdvC_li 94.2 1.1 2.4E-05 39.4 12.5 160 78-273 28-201 (236)
22 cd02510 pp-GalNAc-T pp-GalNAc- 94.1 4.5 9.7E-05 37.3 16.8 51 224-274 168-218 (299)
23 cd04185 GT_2_like_b Subfamily 93.9 1.3 2.9E-05 37.8 12.2 93 125-270 69-163 (202)
24 cd04192 GT_2_like_e Subfamily 93.8 4 8.8E-05 35.2 15.4 158 79-268 29-195 (229)
25 cd06423 CESA_like CESA_like is 93.8 0.83 1.8E-05 36.9 10.2 92 62-161 10-102 (180)
26 PRK11204 N-glycosyltransferase 93.7 2.2 4.8E-05 41.4 14.6 185 45-272 54-251 (420)
27 PF00535 Glycos_transf_2: Glyc 93.6 1.2 2.5E-05 36.0 10.8 99 48-161 3-102 (169)
28 cd06439 CESA_like_1 CESA_like_ 93.5 2.4 5.2E-05 37.6 13.5 187 44-272 28-220 (251)
29 cd06434 GT2_HAS Hyaluronan syn 93.3 2.5 5.3E-05 37.0 13.1 74 79-162 29-102 (235)
30 cd06421 CESA_CelA_like CESA_Ce 93.2 1.9 4E-05 37.6 12.1 45 224-271 157-201 (234)
31 cd04195 GT2_AmsE_like GT2_AmsE 92.9 0.98 2.1E-05 38.5 9.6 75 79-161 30-104 (201)
32 PF13506 Glyco_transf_21: Glyc 92.2 0.32 6.9E-06 41.9 5.5 126 121-274 16-147 (175)
33 PLN02726 dolichyl-phosphate be 91.5 5.9 0.00013 35.3 13.3 163 78-275 40-212 (243)
34 COG1216 Predicted glycosyltran 91.5 12 0.00025 34.9 16.2 193 46-275 4-214 (305)
35 PRK14583 hmsR N-glycosyltransf 91.5 11 0.00023 37.2 16.2 185 45-272 75-272 (444)
36 PF05679 CHGN: Chondroitin N-a 90.5 0.39 8.5E-06 48.4 5.0 61 252-312 11-82 (499)
37 cd06427 CESA_like_2 CESA_like_ 90.2 7.7 0.00017 34.4 12.8 122 126-273 74-204 (241)
38 cd04184 GT2_RfbC_Mx_like Myxoc 90.2 11 0.00023 32.0 16.5 163 79-275 32-195 (202)
39 cd06532 Glyco_transf_25 Glycos 89.9 5.2 0.00011 32.3 10.4 93 49-150 2-95 (128)
40 cd06420 GT2_Chondriotin_Pol_N 88.6 13 0.00028 30.8 13.4 101 127-271 70-170 (182)
41 PF13632 Glyco_trans_2_3: Glyc 86.4 1.9 4E-05 36.8 6.0 49 223-273 68-116 (193)
42 cd02526 GT2_RfbF_like RfbF is 85.1 25 0.00053 30.6 17.5 51 225-276 149-199 (237)
43 TIGR03111 glyc2_xrt_Gpos1 puta 84.9 24 0.00053 34.7 13.7 35 126-161 121-155 (439)
44 cd04187 DPM1_like_bac Bacteria 84.6 7 0.00015 32.7 8.6 76 78-161 29-104 (181)
45 cd04179 DPM_DPG-synthase_like 82.6 6.7 0.00014 32.7 7.6 75 79-161 29-103 (185)
46 cd06438 EpsO_like EpsO protein 82.3 7.9 0.00017 32.7 8.0 35 127-161 71-105 (183)
47 TIGR03030 CelA cellulose synth 81.5 31 0.00068 36.4 13.6 46 225-273 305-350 (713)
48 cd06442 DPM1_like DPM1_like re 80.8 35 0.00076 29.2 13.2 33 128-161 70-102 (224)
49 COG1215 Glycosyltransferases, 80.5 47 0.001 32.0 13.7 193 45-274 54-258 (439)
50 TIGR01556 rhamnosyltran L-rham 80.3 32 0.00069 31.2 11.8 33 127-161 65-97 (281)
51 cd00761 Glyco_tranf_GTA_type G 74.1 38 0.00082 26.1 13.0 33 127-160 68-100 (156)
52 cd04191 Glucan_BSP_ModH Glucan 70.7 61 0.0013 29.5 10.9 110 49-161 3-119 (254)
53 cd04188 DPG_synthase DPG_synth 70.3 60 0.0013 27.7 10.4 76 78-161 30-106 (211)
54 PF10111 Glyco_tranf_2_2: Glyc 70.0 89 0.0019 28.6 15.1 164 77-271 33-212 (281)
55 cd02522 GT_2_like_a GT_2_like_ 69.2 30 0.00065 29.6 8.2 41 228-271 137-177 (221)
56 PRK14716 bacteriophage N4 adso 68.9 1.4E+02 0.003 30.3 15.8 48 226-273 231-281 (504)
57 PRK10714 undecaprenyl phosphat 67.3 1.1E+02 0.0024 28.7 12.5 76 78-161 38-114 (325)
58 KOG3588|consensus 64.3 3.5 7.5E-05 39.7 1.3 78 234-313 1-80 (494)
59 PRK11234 nfrB bacteriophage N4 63.3 2E+02 0.0044 30.6 14.3 190 44-272 62-277 (727)
60 cd02514 GT13_GLCNAC-TI GT13_GL 62.5 71 0.0015 30.6 9.8 26 127-153 88-113 (334)
61 PRK11498 bcsA cellulose syntha 61.4 1.5E+02 0.0032 32.2 12.9 45 225-272 416-460 (852)
62 cd04190 Chitin_synth_C C-termi 57.2 7.7 0.00017 34.7 2.2 25 137-161 73-97 (244)
63 COG4092 Predicted glycosyltran 55.3 83 0.0018 29.3 8.4 98 57-160 18-117 (346)
64 PF03452 Anp1: Anp1; InterPro 54.6 95 0.0021 28.8 8.9 98 64-161 40-166 (269)
65 PHA01631 hypothetical protein 50.9 60 0.0013 27.9 6.3 26 221-246 109-134 (176)
66 PF13704 Glyco_tranf_2_4: Glyc 48.3 1.1E+02 0.0024 22.7 7.4 49 105-154 40-88 (97)
67 PRK05454 glucosyltransferase M 48.2 2E+02 0.0042 30.5 11.1 116 44-161 123-244 (691)
68 PLN03180 reversibly glycosylat 41.3 49 0.0011 31.6 4.9 38 228-265 206-246 (346)
69 cd06437 CESA_CaSu_A2 Cellulose 38.1 2.6E+02 0.0057 24.1 16.4 32 127-159 78-109 (232)
70 PLN03181 glycosyltransferase; 33.7 3.3E+02 0.0072 27.0 9.3 87 63-150 110-211 (453)
71 PF05412 Peptidase_C33: Equine 29.5 42 0.0009 26.5 2.0 29 122-150 48-81 (108)
72 cd06436 GlcNAc-1-P_transferase 28.4 1.1E+02 0.0025 25.8 4.9 23 138-160 90-112 (191)
73 PF03071 GNT-I: GNT-I family; 25.0 1.6E+02 0.0034 29.3 5.6 90 123-243 174-270 (434)
74 PF03490 Varsurf_PPLC: Variant 23.5 39 0.00084 22.9 0.8 24 66-89 9-34 (51)
75 PLN03182 xyloglucan 6-xylosylt 23.4 7.4E+02 0.016 24.6 10.0 92 55-150 102-210 (429)
No 1
>KOG2287|consensus
Probab=100.00 E-value=1e-60 Score=454.72 Aligned_cols=264 Identities=28% Similarity=0.560 Sum_probs=235.9
Q ss_pred CCCCccccccCcccccccCCCCCeeEEEEEEcCCCCHHHHHHHHHHhcCCcCCCCcCEEEEEEecCCCCChhHHHHHHHH
Q psy14347 22 NNYNYPFISKCEQKCAAYNEKEQIRVVYIVKSALRHFERRLAIRQSWGYEKRFSDVPIVTVFILGYDPDNEGLQIEIAEE 101 (316)
Q Consensus 22 n~~~~~~l~~~~~~C~~~~~~~~~~lli~V~S~~~~~~rR~~IR~TW~~~~~~~~~~v~~vFvlG~~~~~~~~~~~l~~E 101 (316)
+...+.+++..++.|... ..++++++|+|+++|++||++||+|||+...+.+.+++.+|++|.+.+.+.++..|.+|
T Consensus 75 ~~~~~~~~l~~p~~~~~~---~~~~lLl~V~S~~~~farR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~E 151 (349)
T KOG2287|consen 75 DFQKFFYLLYLPEICDPD---RPPELLLLVKSAPDNFARRNAIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADE 151 (349)
T ss_pred hhccChhhhcCChhhcCC---CCceEEEEEecCCCCHHHHHHHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHH
Confidence 333444445545566652 25899999999999999999999999999988888999999999987322568899999
Q ss_pred HHHCCCEEEeeeccCCCCchHHHHHHHHHHHHHCCCccEEEEeCCceEEeHHHHHHHHhcCCCCCcccccchhhhhcccc
Q psy14347 102 SERYNDIVQAKFIDSYFNNTIKTMMGFKWAANYCKHSKFYFFADDDFYVSTRNVLRFLRNPLQYPQYLELPIETIQSKSN 181 (316)
Q Consensus 102 ~~~~~DIl~~d~~DsY~Nlt~K~~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~l~~~~~~~~~~~~ 181 (316)
++.||||||+||.|+|.|+|+|++++++|+.++||+++|++|+|||+|||+++|+.+|....
T Consensus 152 a~~ygDIi~~df~Dty~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~------------------ 213 (349)
T KOG2287|consen 152 ARLYGDIIQVDFEDTYFNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLN------------------ 213 (349)
T ss_pred HHHhCCEEEEecccchhchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccC------------------
Confidence 99999999999999999999999999999999999999999999999999999999998752
Q ss_pred ccccCCCCCcceEEEEeec-CcCccCCCCCccccccCCCCCCcccccccceEEecHHHHHHHHHHhccCCCCCCCchHHH
Q psy14347 182 IMDYELPSDVKLFSGFVFV-SSPHRHYTSKWYISLQEYPYHLWPPYVTAGSYVVSREVLLDFYFASHFTKHFRFDDIYLG 260 (316)
Q Consensus 182 ~~~~~~~~~~~ly~G~~~~-~~p~r~~~~Kw~v~~~~y~~~~yP~y~~G~~yvlS~~~~~~l~~~s~~~~~~~~eDv~~G 260 (316)
++...+|.|++.. ..|+|++.+|||||+++||...|||||+|+||++|+++|+.|++++.+.+.+++|||++|
T Consensus 214 ------~~~~~~~~G~v~~~~~p~R~~~~KwyVp~~~y~~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~~~iEDV~~g 287 (349)
T KOG2287|consen 214 ------DPSSDLYYGRVIQNAPPIRDKTSKWYVPESEYPCSVYPPYASGPGYVISGDAARRLLKASKHLKFFPIEDVFVG 287 (349)
T ss_pred ------CCCcceEEEeecccCCCCCCCCCCCccCHHHCCCCCCCCcCCCceeEecHHHHHHHHHHhcCCCccchHHHHHH
Confidence 2567899999995 599999999999999999999999999999999999999999999999999999999998
Q ss_pred HhhHHc-CCceeecCCceecCCCCCccccceeEEEeccCChHHHHHHHHHHHhc
Q psy14347 261 ILAKKT-NTEPFHCGEFYFYKKDYSLHNYQYVIASHGYGNHDELLRVWNEQRGI 313 (316)
Q Consensus 261 i~~~k~-gi~~~~~~~f~~~~~~~~~c~~~~~i~~H~~~~p~~m~~~W~~~~~~ 313 (316)
+|+.+. ||.+.+++++......+++|+++.++++|..+ |.+|..+|+.+++.
T Consensus 288 ~~l~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~-p~e~~~~w~~~~~~ 340 (349)
T KOG2287|consen 288 GCLAEDLGIKPVNHPGFFEIPLSFDPCCYRDLLAVHRLS-PNEMIYLWKKLKDL 340 (349)
T ss_pred HHHHHhcCCCcccCcccccccccCCCCcccceEEEecCC-HHHHHHHHHHhhcc
Confidence 887776 99999999876666666899999999999986 99999999999883
No 2
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=3.2e-58 Score=457.74 Aligned_cols=271 Identities=24% Similarity=0.345 Sum_probs=225.9
Q ss_pred HHhhccCCCCccCCC-CCCccccccCcccccccCCCCCeeEEEEEEcCCCCHHHHHHHHHHhcCCcCCCCcCEEEEEEec
Q psy14347 8 EGYKHDQPCSTRPIN-NYNYPFISKCEQKCAAYNEKEQIRVVYIVKSALRHFERRLAIRQSWGYEKRFSDVPIVTVFILG 86 (316)
Q Consensus 8 ~~~~~~~~~~~~~~n-~~~~~~l~~~~~~C~~~~~~~~~~lli~V~S~~~~~~rR~~IR~TW~~~~~~~~~~v~~vFvlG 86 (316)
+.+.+...|.+.|.. ..++.-+..| .|+. .++++|+|+|+|+|+|++||++||+|||+.....+..++++|+||
T Consensus 352 ~SV~a~~~p~~~~~~~~~d~e~lkAp--pL~~---~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~~~~~~v~~rFvVG 426 (636)
T PLN03133 352 ISVLASGLPTSEDSEHVIDLEALKSP--PLSP---KKPLDLFIGVFSTANNFKRRMAVRRTWMQYDAVRSGAVAVRFFVG 426 (636)
T ss_pred EEEEeeCCCCCCchhcccchHHhcCC--CCCC---CCceEEEEEEeCCcccHHHHHHHHHhhccccccCCCceEEEEEEe
Confidence 344555555555431 1134445554 3654 247899999999999999999999999997665566789999999
Q ss_pred CCCCChhHHHHHHHHHHHCCCEEEeeeccCCCCchHHHHHHHHHHHHHCCCccEEEEeCCceEEeHHHHHHHHhcCCCCC
Q psy14347 87 YDPDNEGLQIEIAEESERYNDIVQAKFIDSYFNNTIKTMMGFKWAANYCKHSKFYFFADDDFYVSTRNVLRFLRNPLQYP 166 (316)
Q Consensus 87 ~~~~~~~~~~~l~~E~~~~~DIl~~d~~DsY~Nlt~K~~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~ 166 (316)
.+. ++.++..|.+|+++||||||+||.|+|+|||+|+++++.|+. +|++++|++|+|||+|||+++|+++|....
T Consensus 427 ~s~-n~~l~~~L~~Ea~~ygDIIq~dF~DsY~NLTlKtl~~~~wa~-~c~~akFilK~DDDvFVnv~~Ll~~L~~~~--- 501 (636)
T PLN03133 427 LHK-NQMVNEELWNEARTYGDIQLMPFVDYYSLITWKTLAICIFGT-EVVSAKYVMKTDDDAFVRVDEVLASLKRTN--- 501 (636)
T ss_pred cCC-cHHHHHHHHHHHHHcCCeEEEeeechhhhhHHHHHHHHHHHH-hCCCceEEEEcCCceEEcHHHHHHHHHhcC---
Confidence 987 788899999999999999999999999999999999999985 588999999999999999999999997532
Q ss_pred cccccchhhhhccccccccCCCCCcceEEEEee-cCcCccCCCCCccccccCCCCCCcccccccceEEecHHHHHHHHHH
Q psy14347 167 QYLELPIETIQSKSNIMDYELPSDVKLFSGFVF-VSSPHRHYTSKWYISLQEYPYHLWPPYVTAGSYVVSREVLLDFYFA 245 (316)
Q Consensus 167 ~~l~~~~~~~~~~~~~~~~~~~~~~~ly~G~~~-~~~p~r~~~~Kw~v~~~~y~~~~yP~y~~G~~yvlS~~~~~~l~~~ 245 (316)
....+|.|++. +..|+|++.+|||||.++||.+.|||||+|+|||||+++|+.|+.+
T Consensus 502 ----------------------~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~eyp~~~YPpYasG~gYVlS~Dla~~L~~~ 559 (636)
T PLN03133 502 ----------------------VSHGLLYGLINSDSQPHRNPDSKWYISPEEWPEETYPPWAHGPGYVVSRDIAKEVYKR 559 (636)
T ss_pred ----------------------CCCceEEEEeccCCCcccCCCCCCCCCHHHCCCCCCCCCCCcCEEEEcHHHHHHHHHh
Confidence 34568999998 5589999999999999999999999999999999999999999987
Q ss_pred h--ccCCCCCCCchHHHHhhH---HcCCceeecCCceecCCCCCccccceeEEEeccCChHHHHHHHHHHHhccC
Q psy14347 246 S--HFTKHFRFDDIYLGILAK---KTNTEPFHCGEFYFYKKDYSLHNYQYVIASHGYGNHDELLRVWNEQRGIGN 315 (316)
Q Consensus 246 s--~~~~~~~~eDv~~Gi~~~---k~gi~~~~~~~f~~~~~~~~~c~~~~~i~~H~~~~p~~m~~~W~~~~~~~~ 315 (316)
+ ..++.|++||||+|+|+. ++|+++.+...+.+. .+.|.. ..|++|+. +|.+|.++|+.++..++
T Consensus 560 s~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~~r~~---~~~C~~-~~i~~H~~-sP~eM~~lW~~l~~~~~ 629 (636)
T PLN03133 560 HKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYENDGRIY---NEGCKD-GYVVAHYQ-SPREMLCLWQKLQEGKR 629 (636)
T ss_pred hhhcccCcCChhhHhHHHHHHHhcccCCCceeeCCCccc---CCcCCC-CeEEEecC-CHHHHHHHHHHHhccCC
Confidence 5 478999999999999975 467777665444332 257875 56789987 69999999999987754
No 3
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=1.7e-53 Score=374.84 Aligned_cols=194 Identities=40% Similarity=0.785 Sum_probs=176.6
Q ss_pred HHHHHHHHHhcCCcCCCCcCEEEEEEecCCC-CChhHHHHHHHHHHHCCCEEEeeeccCCCCchHHHHHHHHHHHHHCCC
Q psy14347 59 ERRLAIRQSWGYEKRFSDVPIVTVFILGYDP-DNEGLQIEIAEESERYNDIVQAKFIDSYFNNTIKTMMGFKWAANYCKH 137 (316)
Q Consensus 59 ~rR~~IR~TW~~~~~~~~~~v~~vFvlG~~~-~~~~~~~~l~~E~~~~~DIl~~d~~DsY~Nlt~K~~~~l~w~~~~c~~ 137 (316)
+||++||+|||+.....+.+++++|++|.+. .++.++..|.+|+++|+||||+||.|+|+|+|+|++++++|+.++||+
T Consensus 1 ~rR~~IR~TW~~~~~~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~~~c~~ 80 (195)
T PF01762_consen 1 ERRQAIRETWGNQRNFKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWASKHCPN 80 (195)
T ss_pred ChHHHHHHHHhcccccCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHHhhCCc
Confidence 5899999999999877788999999999987 467788889999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCceEEeHHHHHHHHhcCCCCCcccccchhhhhccccccccCCCCCcceEEEEeecCcCccCCCCCccccccC
Q psy14347 138 SKFYFFADDDFYVSTRNVLRFLRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKLFSGFVFVSSPHRHYTSKWYISLQE 217 (316)
Q Consensus 138 ~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ly~G~~~~~~p~r~~~~Kw~v~~~~ 217 (316)
++|++|+|||+|||+++|.++|..... ......+++|....+.|+|++.+|||+|.++
T Consensus 81 ~~~v~k~DDD~~vn~~~l~~~L~~~~~----------------------~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~ 138 (195)
T PF01762_consen 81 AKYVLKVDDDVFVNPDRLVSFLKSLKQ----------------------DPSKNSIYGGCIKNGPPIRDPSSKWYVSEEE 138 (195)
T ss_pred hhheeecCcEEEEehHHhhhhhhhccc----------------------CccccccccccccCCccccccccCceeeeee
Confidence 999999999999999999999987511 0133456655555668999999999999999
Q ss_pred CCCCCcccccccceEEecHHHHHHHHHHhccCCCCCCCchHHHHhhHHcCCceeecC
Q psy14347 218 YPYHLWPPYVTAGSYVVSREVLLDFYFASHFTKHFRFDDIYLGILAKKTNTEPFHCG 274 (316)
Q Consensus 218 y~~~~yP~y~~G~~yvlS~~~~~~l~~~s~~~~~~~~eDv~~Gi~~~k~gi~~~~~~ 274 (316)
||.+.|||||+|+||+||+++++.|+.++..++.+++|||++|+|+.++||++.|+|
T Consensus 139 y~~~~yP~y~~G~~yvls~~~v~~i~~~~~~~~~~~~eDv~iGi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 139 YPDDYYPPYCSGGGYVLSSDVVKRIYKASSHTPFFPLEDVFIGILAEKLGIKPIHDP 195 (195)
T ss_pred cccccCCCcCCCCeEEecHHHHHHHHHHhhcCCCCCchHHHHHHHHHHCCCCccCCC
Confidence 999999999999999999999999999999999999999999999999999998865
No 4
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1e-51 Score=390.58 Aligned_cols=218 Identities=17% Similarity=0.223 Sum_probs=191.2
Q ss_pred CCeeEEEEEEcCCCCHHHHHHHHHHhcCCcCC-----CCcCEEEEEEecCCCC-ChhHHHHHHHHHHHCCCEEEeeeccC
Q psy14347 43 EQIRVVYIVKSALRHFERRLAIRQSWGYEKRF-----SDVPIVTVFILGYDPD-NEGLQIEIAEESERYNDIVQAKFIDS 116 (316)
Q Consensus 43 ~~~~lli~V~S~~~~~~rR~~IR~TW~~~~~~-----~~~~v~~vFvlG~~~~-~~~~~~~l~~E~~~~~DIl~~d~~Ds 116 (316)
+++.++|+|.|+++|++||++||+|||+.... ...+++++|++|++.+ +...+..|++|+++|||||++||.|+
T Consensus 137 ~~~~LvIgI~Sap~~~~RR~AIR~TWg~~~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDs 216 (408)
T PLN03193 137 RRYLMVVGINTAFSSRKRRDSVRATWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEG 216 (408)
T ss_pred ceEEEEEEEeCCCCCHHHHHHHHHHHcCCcccccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEecccc
Confidence 57999999999999999999999999986432 2356899999999763 46788899999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHCCCccEEEEeCCceEEeHHHHHHHHhcCCCCCcccccchhhhhccccccccCCCCCcceEEE
Q psy14347 117 YFNNTIKTMMGFKWAANYCKHSKFYFFADDDFYVSTRNVLRFLRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKLFSG 196 (316)
Q Consensus 117 Y~Nlt~K~~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ly~G 196 (316)
|.|||+||+++|+|+.++| +++||+|+|||+|||+++|+.+|.... ...++|.|
T Consensus 217 Y~NLT~KTl~~f~wA~~~~-dAkF~mK~DDDvfVnv~~L~~~L~~~~-------------------------~~~rlYiG 270 (408)
T PLN03193 217 YLELSAKTKTYFATAVAMW-DADFYVKVDDDVHVNIATLGETLVRHR-------------------------KKPRVYIG 270 (408)
T ss_pred cccchHHHHHHHHHHHHcC-CCeEEEEcCCCceEcHHHHHHHHHhcC-------------------------CCCCEEEE
Confidence 9999999999999999987 899999999999999999999997531 23469999
Q ss_pred EeecCcCccCCCCCccccccCC----CCCCcccccccceEEecHHHHHHHHHHhccCCCCCCCchHHHHhhHHcCCceee
Q psy14347 197 FVFVSSPHRHYTSKWYISLQEY----PYHLWPPYVTAGSYVVSREVLLDFYFASHFTKHFRFDDIYLGILAKKTNTEPFH 272 (316)
Q Consensus 197 ~~~~~~p~r~~~~Kw~v~~~~y----~~~~yP~y~~G~~yvlS~~~~~~l~~~s~~~~~~~~eDv~~Gi~~~k~gi~~~~ 272 (316)
++.. .|+|++.++||++.+.| +.+.|||||+|+|||||+++|+.|+.++..++.+++|||++|+|+..++|+.+|
T Consensus 271 ~m~~-gPvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~~n~~~L~~y~~EDV~vG~Wl~~L~V~~vd 349 (408)
T PLN03193 271 CMKS-GPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISKDLASYISINQHVLHKYANEDVSLGSWFIGLDVEHID 349 (408)
T ss_pred eccc-CccccCCCCcCcCcccccccCccccCCCCCCcceEEehHHHHHHHHhChhhhcccCcchhhhhhHhccCCceeee
Confidence 9975 58888777777777777 668999999999999999999999988888888999999999999999999999
Q ss_pred cCCceecCCCCCccccc
Q psy14347 273 CGEFYFYKKDYSLHNYQ 289 (316)
Q Consensus 273 ~~~f~~~~~~~~~c~~~ 289 (316)
+++|..... ..|..+
T Consensus 350 d~~fcc~~~--~~C~~~ 364 (408)
T PLN03193 350 DRRLCCGTP--PDCEWK 364 (408)
T ss_pred cccccCCCC--cccccc
Confidence 999976522 356554
No 5
>KOG2288|consensus
Probab=100.00 E-value=1.9e-37 Score=273.85 Aligned_cols=210 Identities=20% Similarity=0.279 Sum_probs=184.7
Q ss_pred CCeeEEEEEEcCCCCHHHHHHHHHHhcCCc-----CCCCcCEEEEEEecCCCCChhHHHHHHHHHHHCCCEEEee-eccC
Q psy14347 43 EQIRVVYIVKSALRHFERRLAIRQSWGYEK-----RFSDVPIVTVFILGYDPDNEGLQIEIAEESERYNDIVQAK-FIDS 116 (316)
Q Consensus 43 ~~~~lli~V~S~~~~~~rR~~IR~TW~~~~-----~~~~~~v~~vFvlG~~~~~~~~~~~l~~E~~~~~DIl~~d-~~Ds 116 (316)
.++.++|+|.|++++.+||+.+|+||+... .-....+.++|++|..........+|++|.++|+|.+.+| ..|.
T Consensus 9 ~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~~~g~~~~r~ie~E~~~~~DfllLd~h~E~ 88 (274)
T KOG2288|consen 9 RKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTATLGASLDRALEEENAQHGDFLLLDRHEEA 88 (274)
T ss_pred cceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEeccCCccHHHHHHHHHHHHhcCCeEeechhHHH
Confidence 478999999999999999999999999872 1234578899999994437788999999999999999999 9999
Q ss_pred CCCchHHHHHHHHHHHHHCCCccEEEEeCCceEEeHHHHHHHHhcCCCCCcccccchhhhhccccccccCCCCCcceEEE
Q psy14347 117 YFNNTIKTMMGFKWAANYCKHSKFYFFADDDFYVSTRNVLRFLRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKLFSG 196 (316)
Q Consensus 117 Y~Nlt~K~~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ly~G 196 (316)
|.+|+.||+++|.++..++ +++|++|+|||+|||++.|...|... .....+|+|
T Consensus 89 Y~~Ls~Kt~~~f~~A~~~~-daeFyvKvDDDv~v~l~~L~~~la~~-------------------------r~~pr~YiG 142 (274)
T KOG2288|consen 89 YEELSAKTKAFFSAAVAHW-DAEFYVKVDDDVYVRLARLGTLLARE-------------------------RSHPRLYIG 142 (274)
T ss_pred HHHHHHHHHHHHHHHHHhc-cceEEEEccccceecHHHHHHHHHhh-------------------------ccCCceEEE
Confidence 9999999999999999998 99999999999999999999988763 244789999
Q ss_pred EeecCcCccCCCCCccccccCCCC-CCcccccccceEEecHHHHHHHHHHhccCCCCCCCchHHHHhhHHcCCceeecCC
Q psy14347 197 FVFVSSPHRHYTSKWYISLQEYPY-HLWPPYVTAGSYVVSREVLLDFYFASHFTKHFRFDDIYLGILAKKTNTEPFHCGE 275 (316)
Q Consensus 197 ~~~~~~p~r~~~~Kw~v~~~~y~~-~~yP~y~~G~~yvlS~~~~~~l~~~s~~~~~~~~eDv~~Gi~~~k~gi~~~~~~~ 275 (316)
++..+..+-++.+||+-|++-+.. +.|.+|+.|++|+||++++..|..+......+..|||.+|.|+.-++|+.+|.++
T Consensus 143 cmksg~v~~~~~~kw~EpeWkfg~~g~YfrhA~G~~YvlS~dLa~yi~in~~lL~~y~nEDVSlGaW~~gldV~h~dd~r 222 (274)
T KOG2288|consen 143 CMKSGPVLTQPGGKWYEPEWKFGDNGNYFRHATGGGYVLSKDLATYISINRQLLHKYANEDVSLGAWMIGLDVEHVDDPR 222 (274)
T ss_pred EecCCccccCCCCcccChhhhcCcccccchhccCceEEeeHHHHHHHHHhHHHHHhhccCCcccceeeeeeeeeEecCCc
Confidence 998776677789999999833332 1399999999999999999999998888888999999999999999999999887
Q ss_pred cee
Q psy14347 276 FYF 278 (316)
Q Consensus 276 f~~ 278 (316)
+..
T Consensus 223 lC~ 225 (274)
T KOG2288|consen 223 LCC 225 (274)
T ss_pred ccc
Confidence 754
No 6
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=100.00 E-value=2e-34 Score=269.41 Aligned_cols=223 Identities=17% Similarity=0.150 Sum_probs=175.3
Q ss_pred CCeeEEEEEEcCCCC--HHHHHHHHHHhcCCcC-------CCCcCEEEEEEecCCCC-ChhHHHHHHHHHHHCCCEEEee
Q psy14347 43 EQIRVVYIVKSALRH--FERRLAIRQSWGYEKR-------FSDVPIVTVFILGYDPD-NEGLQIEIAEESERYNDIVQAK 112 (316)
Q Consensus 43 ~~~~lli~V~S~~~~--~~rR~~IR~TW~~~~~-------~~~~~v~~vFvlG~~~~-~~~~~~~l~~E~~~~~DIl~~d 112 (316)
+.-.++++|.|..++ +.||++.|+||.+-.. +.| .+-++|+||..++ +-+.+++|.+|+++|||||+++
T Consensus 78 ~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg-~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVilp 156 (382)
T PTZ00210 78 QRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSG-SLLPLYLLAPHQSNSYLISHSLKEEAARTHDIITLP 156 (382)
T ss_pred CCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCch-hhhhhhhhccCCccchhhhHHHHHHHHHhCCEEEEe
Confidence 567788999999888 9999999999997643 334 3678899999772 3388899999999999999999
Q ss_pred e------------------ccCCCCchHHHHHHHHHHHHHCCCccEEEEeCCceEEeHHHHHHHHhcCCCCCcccccchh
Q psy14347 113 F------------------IDSYFNNTIKTMMGFKWAANYCKHSKFYFFADDDFYVSTRNVLRFLRNPLQYPQYLELPIE 174 (316)
Q Consensus 113 ~------------------~DsY~Nlt~K~~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~l~~~~~ 174 (316)
| .|++.|+|+||+++++|+...||+++|++|+|||+|||+++++++|+..
T Consensus 157 f~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~------------ 224 (382)
T PTZ00210 157 TNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVM------------ 224 (382)
T ss_pred cccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhC------------
Confidence 9 7788899999999999999999999999999999999999999999753
Q ss_pred hhhccccccccCCCCCcceEEEEeecC-cCccCCCCCccccccCCCCCCcccccccceEEecHHHHHHHHHHhc--cC--
Q psy14347 175 TIQSKSNIMDYELPSDVKLFSGFVFVS-SPHRHYTSKWYISLQEYPYHLWPPYVTAGSYVVSREVLLDFYFASH--FT-- 249 (316)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~ly~G~~~~~-~p~r~~~~Kw~v~~~~y~~~~yP~y~~G~~yvlS~~~~~~l~~~s~--~~-- 249 (316)
++..+|.|.+... .|.|++ +||||+|+||+||+++|+.|+.... +.
T Consensus 225 --------------prr~LY~G~v~~~~~p~Rd~---------------~PpY~~G~gYvLSrDVA~~Lvs~~pl~rL~~ 275 (382)
T PTZ00210 225 --------------PRHGLYMGRYNYYNRIWRRN---------------QLTYVNGYCITLSRDTAQAIISYKPLERLVN 275 (382)
T ss_pred --------------CCCceEEEeeCCCCccccCC---------------CCCccccceeeccHHHHHHHHhhChHhHhhc
Confidence 4456999998743 555542 4999999999999999999998732 22
Q ss_pred -C------------CCCCCchHHHHhh-HHcCCcee-----ecCCceecCCCCCccc---cceeEEEeccCChHHHHHHH
Q psy14347 250 -K------------HFRFDDIYLGILA-KKTNTEPF-----HCGEFYFYKKDYSLHN---YQYVIASHGYGNHDELLRVW 307 (316)
Q Consensus 250 -~------------~~~~eDv~~Gi~~-~k~gi~~~-----~~~~f~~~~~~~~~c~---~~~~i~~H~~~~p~~m~~~W 307 (316)
| .+..||+.+|.++ .+++.++. ...+|+.... ..|. ....+.+|+++ +++-..+.
T Consensus 276 ~pys~~~~~~y~~~~~~~EDiMvG~vLr~~~k~~~l~~V~~~~c~Fhd~~~--~~~~~~v~~~sVvvHhik-e~dYa~Lm 352 (382)
T PTZ00210 276 MPFSMWDYFDFLDLGMFYEDVMVGMILREKVVYRNLISVEMGRCHFHNAGK--FGVRKSVRNMSVVIHHIQ-EADYEMLM 352 (382)
T ss_pred CCCchHHHHHHHHhhcCchHHHHHHHHHHhcCcCceeeeccccccceecCC--CCCccccccceEEEEecC-HHHHHHHH
Confidence 2 2568999999987 55554432 2334543322 2232 35789999996 77766665
Q ss_pred HHH
Q psy14347 308 NEQ 310 (316)
Q Consensus 308 ~~~ 310 (316)
..+
T Consensus 353 ~~F 355 (382)
T PTZ00210 353 DYF 355 (382)
T ss_pred HHh
Confidence 554
No 7
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.86 E-value=1.5e-21 Score=178.39 Aligned_cols=212 Identities=19% Similarity=0.250 Sum_probs=110.4
Q ss_pred eEEEEEEcCCCCHHHH-HHHHHHhcCCcCCCCcCEEEEEEecCCCCChhHHHHHHHHHHHCCCEEEeeeccCCCCchHHH
Q psy14347 46 RVVYIVKSALRHFERR-LAIRQSWGYEKRFSDVPIVTVFILGYDPDNEGLQIEIAEESERYNDIVQAKFIDSYFNNTIKT 124 (316)
Q Consensus 46 ~lli~V~S~~~~~~rR-~~IR~TW~~~~~~~~~~v~~vFvlG~~~~~~~~~~~l~~E~~~~~DIl~~d~~DsY~Nlt~K~ 124 (316)
+++|+|+|++.+.+.| .+|++||++.+. . .+|+..... ++. |..+ .-.+++..+....+...+++.
T Consensus 7 dI~i~V~T~~k~h~tR~~~I~~TW~~~~~--~----~~~ifsd~~-d~~----l~~~--~~~~l~~~~~~~~~~~~~~~~ 73 (252)
T PF02434_consen 7 DIFIAVKTTKKFHKTRAPAIKQTWAKRCN--K----QTFIFSDAE-DPS----LPTV--TGVHLVNPNCDAGHCRKTLSC 73 (252)
T ss_dssp GEEEEEE--GGGTTTTHHHHHHTGGGGSG--G----GEEEEESS---HH----HHHH--HGGGEEE-------------H
T ss_pred cEEEEEEeCHHHHHHHHHHHHHHHHhhcC--C----ceEEecCcc-ccc----cccc--cccccccCCCcchhhHHHHHH
Confidence 6899999999888777 899999999875 2 245433222 333 3322 334566666555555555666
Q ss_pred HHHHHHHHHHCCCccEEEEeCCceEEeHHHHHHHHhcCCCCCcccccchhhhhccccccccCCCCCcceEEEEeecCcCc
Q psy14347 125 MMGFKWAANYCKHSKFYFFADDDFYVSTRNVLRFLRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKLFSGFVFVSSPH 204 (316)
Q Consensus 125 ~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ly~G~~~~~~p~ 204 (316)
++++.+-...-++.+|++++|||+||++++|.++|... +++.++|+|......|.
T Consensus 74 ~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~-------------------------~~~~~~yiG~~~~~~~~ 128 (252)
T PF02434_consen 74 KMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKY-------------------------DPSEPIYIGRPSGDRPI 128 (252)
T ss_dssp HHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS--------------------------TTS--EEE-EE-----
T ss_pred HHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhC-------------------------CCccCEEeeeeccCccc
Confidence 65555544444578999999999999999999999875 36788999988744443
Q ss_pred cCCCCCccccccCCCCCCccccc-ccceEEecHHHHHHHHHHhc--cCC-C----CCCCchHHHHhhHH-cCCceeecCC
Q psy14347 205 RHYTSKWYISLQEYPYHLWPPYV-TAGSYVVSREVLLDFYFASH--FTK-H----FRFDDIYLGILAKK-TNTEPFHCGE 275 (316)
Q Consensus 205 r~~~~Kw~v~~~~y~~~~yP~y~-~G~~yvlS~~~~~~l~~~s~--~~~-~----~~~eDv~~Gi~~~k-~gi~~~~~~~ 275 (316)
.... + .....-....| .|+ +|+||+||+.++++|..... ..+ . -..||+.+|.|++. +||+.++.+.
T Consensus 129 ~~~~-~--~~~~~~~~~~~-~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~ 204 (252)
T PF02434_consen 129 EIIH-R--FNPNKSKDSGF-WFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPL 204 (252)
T ss_dssp ---------------------EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT
T ss_pred eeec-c--ccccccCcCce-EeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechh
Confidence 2100 0 00000011122 244 67999999999999954332 222 1 23799999999998 9999999999
Q ss_pred ceecCCC---CCcccc--ceeEEEeccCC
Q psy14347 276 FYFYKKD---YSLHNY--QYVIASHGYGN 299 (316)
Q Consensus 276 f~~~~~~---~~~c~~--~~~i~~H~~~~ 299 (316)
|+..... +.+... +-.|++|...+
T Consensus 205 fhs~~~~l~~~~~~~l~~q~~~s~~~~~~ 233 (252)
T PF02434_consen 205 FHSHLENLQDYNPETLHRQVPISYHKFEN 233 (252)
T ss_dssp ---SSS-GGG--TTTGGG-SEEE-EEETT
T ss_pred hcccCcccccCCHHHhccCCCeecCCCcC
Confidence 9876543 233322 35688888753
No 8
>KOG2246|consensus
Probab=99.68 E-value=2.2e-16 Score=150.71 Aligned_cols=169 Identities=20% Similarity=0.220 Sum_probs=130.6
Q ss_pred CCCeeEEEEEEcCCCCHHHH-HHHHHHhcCCcCCCCcCEEEEEEe---cCCCCChhHHHHHHHHHHHCCCEEEeeeccCC
Q psy14347 42 KEQIRVVYIVKSALRHFERR-LAIRQSWGYEKRFSDVPIVTVFIL---GYDPDNEGLQIEIAEESERYNDIVQAKFIDSY 117 (316)
Q Consensus 42 ~~~~~lli~V~S~~~~~~rR-~~IR~TW~~~~~~~~~~v~~vFvl---G~~~~~~~~~~~l~~E~~~~~DIl~~d~~DsY 117 (316)
..+..++++|+|++.+...| +.+-+||++.+. +..|+- ++.. . .+. .|..+..|+|
T Consensus 88 ~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~------~~~f~s~~~s~~~--~-----------~f~-~v~~~~~~g~ 147 (364)
T KOG2246|consen 88 SRSGRVLCWVLTSPMRHVTRADAVKETWLKRCD------KGIFFSPTLSKDD--S-----------RFP-TVYYNLPDGY 147 (364)
T ss_pred CCCceEEEEEEecCcCceeehhhhhcccccccC------cceecCccCCCCC--C-----------cCc-eeeccCCcch
Confidence 36889999999999888877 699999999886 234553 3322 1 121 3467889999
Q ss_pred CCchHHHHHHHHHHHH-HCCCccEEEEeCCceEEeHHHHHHHHhcCCCCCcccccchhhhhccccccccCCCCCcceEEE
Q psy14347 118 FNNTIKTMMGFKWAAN-YCKHSKFYFFADDDFYVSTRNVLRFLRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKLFSG 196 (316)
Q Consensus 118 ~Nlt~K~~~~l~w~~~-~c~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ly~G 196 (316)
+++..|+..+++++.+ +-.+++|++|+|||||+.++||..+|... ++++++|.|
T Consensus 148 ~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~y-------------------------Dp~~p~YiG 202 (364)
T KOG2246|consen 148 RSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKY-------------------------DPEKPVYLG 202 (364)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhc-------------------------CCCCcEEec
Confidence 9999999999999984 45579999999999999999999999875 478899999
Q ss_pred EeecCcCccCCCCCccccccCCCCCCcccccccceEEecHHHHHHHHHHhccCC----C-C--CCCchHHHHhhHHcCCc
Q psy14347 197 FVFVSSPHRHYTSKWYISLQEYPYHLWPPYVTAGSYVVSREVLLDFYFASHFTK----H-F--RFDDIYLGILAKKTNTE 269 (316)
Q Consensus 197 ~~~~~~p~r~~~~Kw~v~~~~y~~~~yP~y~~G~~yvlS~~~~~~l~~~s~~~~----~-~--~~eDv~~Gi~~~k~gi~ 269 (316)
+..+. .-+ .+ |. -+|+||++|+++.+.+++...... . . ..||+-+|.|++.+||.
T Consensus 203 ~~~~~--~~~-~~--y~-------------~g~ag~~ls~aa~~~la~~l~~~~~~C~~~~~~~~eD~~i~~Cl~~~GV~ 264 (364)
T KOG2246|consen 203 YRSKS--YFQ-NG--YS-------------SGGAGYVLSFAALRRLAERLLNNEDKCPQRYPSYGEDRRIGRCLAEVGVP 264 (364)
T ss_pred ccccc--ccc-cc--cc-------------cCCCCcceeHHHHHHHHHHHhcchhhcccccCCchhHHHHHHHHHHhCCC
Confidence 86532 111 11 21 168999999999999887654322 1 2 38999999999999999
Q ss_pred eeec
Q psy14347 270 PFHC 273 (316)
Q Consensus 270 ~~~~ 273 (316)
+.+.
T Consensus 265 ~~d~ 268 (364)
T KOG2246|consen 265 ATDE 268 (364)
T ss_pred ccCc
Confidence 8753
No 9
>PLN03153 hypothetical protein; Provisional
Probab=99.44 E-value=1.4e-12 Score=127.33 Aligned_cols=203 Identities=11% Similarity=0.054 Sum_probs=126.3
Q ss_pred eeEEEEEEcCCCCHH-HHHHHHHHhcCCcCCCCcCEEEEEEecCCCCChhHHHHHHHHHHHCCCEEEeeeccC---CCC-
Q psy14347 45 IRVVYIVKSALRHFE-RRLAIRQSWGYEKRFSDVPIVTVFILGYDPDNEGLQIEIAEESERYNDIVQAKFIDS---YFN- 119 (316)
Q Consensus 45 ~~lli~V~S~~~~~~-rR~~IR~TW~~~~~~~~~~v~~vFvlG~~~~~~~~~~~l~~E~~~~~DIl~~d~~Ds---Y~N- 119 (316)
-.++++|.++....+ |+..|+.+|..... . ..||+..... +......|. - +.+.-..+ |.|
T Consensus 122 ~hIvF~I~~s~~~w~~R~~yik~wW~p~~~-r----g~v~ld~~~~-~~~~~~~~P-------~-i~is~d~s~f~y~~~ 187 (537)
T PLN03153 122 NHIMFGIAGSSQLWKRRKELVRLWWRPNQM-R----GHVWLEEQVS-PEEGDDSLP-------P-IMVSEDTSRFRYTNP 187 (537)
T ss_pred ccEEEEEEEchhhhhhhhhhhhhhcCcccc-e----eEEEecccCC-CCCCcCCCC-------C-EEeCCCcccccccCC
Confidence 357888998877665 55899999997542 2 3567655433 110000000 0 11111011 333
Q ss_pred --chHH--HH-HHHHHHHHHCCCccEEEEeCCceEEeHHHHHHHHhcCCCCCcccccchhhhhccccccccCCCCCcceE
Q psy14347 120 --NTIK--TM-MGFKWAANYCKHSKFYFFADDDFYVSTRNVLRFLRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKLF 194 (316)
Q Consensus 120 --lt~K--~~-~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ly 194 (316)
.... +. +.++-+..+.|+++|++++|||||+.++||++.|... +++++.|
T Consensus 188 ~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~Y-------------------------Dptkp~Y 242 (537)
T PLN03153 188 TGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKY-------------------------DPSEMVY 242 (537)
T ss_pred CCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhc-------------------------CCCCCEE
Confidence 2221 11 2333344457899999999999999999999999875 4678999
Q ss_pred EEEeecCcCccCCCCCccccccCCCCCCcccccccceEEecHHHHHHHHHHhc----cCCCCCCCchHHHHhhHHcCCce
Q psy14347 195 SGFVFVSSPHRHYTSKWYISLQEYPYHLWPPYVTAGSYVVSREVLLDFYFASH----FTKHFRFDDIYLGILAKKTNTEP 270 (316)
Q Consensus 195 ~G~~~~~~p~r~~~~Kw~v~~~~y~~~~yP~y~~G~~yvlS~~~~~~l~~~s~----~~~~~~~eDv~~Gi~~~k~gi~~ 270 (316)
+|........- ..+ . |--.-+|+||+||+.+++.|...-. ..+...-+|.-+|.|+..+||+.
T Consensus 243 IGs~Se~~~qn---~~f-------~---~~fA~GGAG~~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~L 309 (537)
T PLN03153 243 VGGPSESHSAN---SYF-------S---HNMAFGGGGIAISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPL 309 (537)
T ss_pred ecccccccccc---ccc-------c---cccccCCceEEEcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCc
Confidence 99765321100 000 0 1112379999999999998876522 22334568888999999999999
Q ss_pred eecCCceecCCCCCcccc------ceeEEEeccCC
Q psy14347 271 FHCGEFYFYKKDYSLHNY------QYVIASHGYGN 299 (316)
Q Consensus 271 ~~~~~f~~~~~~~~~c~~------~~~i~~H~~~~ 299 (316)
++.++|+.....-++..+ ..++++|.++.
T Consensus 310 T~~~gfhQ~D~~Gd~~G~les~p~~P~vSlHH~~~ 344 (537)
T PLN03153 310 SREPGFHQWDIRGNAHGLLSSHPIAPFVSIHHVEA 344 (537)
T ss_pred eecCCccccccCCCcchHhhcCCCCCceeeeeccc
Confidence 999999877543333322 35688887753
No 10
>KOG3708|consensus
Probab=98.18 E-value=1.9e-05 Score=77.09 Aligned_cols=198 Identities=14% Similarity=0.105 Sum_probs=125.9
Q ss_pred eeEEEEEEcCCCCHHHHHHHHHHhcCCcCCCCcCEEEEEEecCCCCChhHHHHHHHHHHHCCCEEEeeeccCCCCchHHH
Q psy14347 45 IRVVYIVKSALRHFERRLAIRQSWGYEKRFSDVPIVTVFILGYDPDNEGLQIEIAEESERYNDIVQAKFIDSYFNNTIKT 124 (316)
Q Consensus 45 ~~lli~V~S~~~~~~rR~~IR~TW~~~~~~~~~~v~~vFvlG~~~~~~~~~~~l~~E~~~~~DIl~~d~~DsY~Nlt~K~ 124 (316)
-+++++|+|. ...--+|-+|-+..-. ++.|+.+.+..+. |.-+....--|.--..|+
T Consensus 26 Erl~~aVmte---~tlA~a~NrT~ahhvp------rv~~F~~~~~i~~--------------~~a~~~~vs~~d~r~~~~ 82 (681)
T KOG3708|consen 26 ERLMAAVMTE---STLALAINRTLAHHVP------RVHLFADSSRIDN--------------DLAQLTNVSPYDLRGQKT 82 (681)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHhhcc------eeEEeeccccccc--------------cHhhccccCccccCcccc
Confidence 3567788882 2556678888887643 5667777654111 111222222232223333
Q ss_pred -HHHHHHHHHHCC-CccEEEEeCCceEEeHHHHHHHHhcCCCCCcccccchhhhhccccccccCCCCCcceEEEEeecCc
Q psy14347 125 -MMGFKWAANYCK-HSKFYFFADDDFYVSTRNVLRFLRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKLFSGFVFVSS 202 (316)
Q Consensus 125 -~~~l~w~~~~c~-~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ly~G~~~~~~ 202 (316)
.+.++++.++.. +.+|++-+-|+||||...|++.+...+ -..++|+|.-..+.
T Consensus 83 ~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hms-------------------------in~dlymGEe~~~g 137 (681)
T KOG3708|consen 83 HSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMS-------------------------INEDLYMGEEAEDG 137 (681)
T ss_pred HHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcc-------------------------cccccccchhhhCc
Confidence 456677777654 689999999999999999999887643 34678988322110
Q ss_pred CccCCCCCccccccCCCCCCccccc-ccceEEecHHHHHHHHHHhccCC--CCC-CCchHHHHhhHH-cCCceee-cCCc
Q psy14347 203 PHRHYTSKWYISLQEYPYHLWPPYV-TAGSYVVSREVLLDFYFASHFTK--HFR-FDDIYLGILAKK-TNTEPFH-CGEF 276 (316)
Q Consensus 203 p~r~~~~Kw~v~~~~y~~~~yP~y~-~G~~yvlS~~~~~~l~~~s~~~~--~~~-~eDv~~Gi~~~k-~gi~~~~-~~~f 276 (316)
.+. | .|.||+||+.++.+|-.+-.... ... =+|+++|.|.+. .|+.+.. +.|.
T Consensus 138 -----------------s~r----C~l~~G~LLS~s~l~~lrnnle~C~~~~lsad~d~~lgrCi~~At~v~C~~~hQGv 196 (681)
T KOG3708|consen 138 -----------------SGR----CRLDTGMLLSQSLLHALRNNLEGCRNDILSADPDEWLGRCIQDATGVGCKPLHQGV 196 (681)
T ss_pred -----------------cCc----cccccceeecHHHHHHHHhhHHHhhcccccCCcHHHHHHHHHHhhcCCccchhhhH
Confidence 011 5 47899999999999976543332 233 358999999854 6776543 1222
Q ss_pred ---eecC-CC--------C-CccccceeEEEeccCChHHHHHHHHHHH
Q psy14347 277 ---YFYK-KD--------Y-SLHNYQYVIASHGYGNHDELLRVWNEQR 311 (316)
Q Consensus 277 ---~~~~-~~--------~-~~c~~~~~i~~H~~~~p~~m~~~W~~~~ 311 (316)
.... .+ + ....++..+|+|.+.+|.+|+++++.+.
T Consensus 197 rq~s~~~dspgr~~~~~e~~~s~aFr~A~tv~pv~~p~d~yrLH~yfs 244 (681)
T KOG3708|consen 197 RQYSEREDSPGRHDSIPEWEGSPAFRSALTVHPVLSPADMYRLHKYFS 244 (681)
T ss_pred HhhhHhhcCCCccccchhhcCChHHhhhhccCccCCHHHHHHHHHHHH
Confidence 1100 00 0 1234678999999999999999999875
No 11
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=96.13 E-value=0.11 Score=45.25 Aligned_cols=101 Identities=16% Similarity=0.136 Sum_probs=55.0
Q ss_pred EEEEcCCCCHHHHHHHHHHhcCCcCCCCcCEEEEEEecCCCC--Ch-hHHHHHHHHHHHCCCEEEeeeccCCCCchHHHH
Q psy14347 49 YIVKSALRHFERRLAIRQSWGYEKRFSDVPIVTVFILGYDPD--NE-GLQIEIAEESERYNDIVQAKFIDSYFNNTIKTM 125 (316)
Q Consensus 49 i~V~S~~~~~~rR~~IR~TW~~~~~~~~~~v~~vFvlG~~~~--~~-~~~~~l~~E~~~~~DIl~~d~~DsY~Nlt~K~~ 125 (316)
|.|.|-+...+||+.+.+..... +. ..-|+-|.... +. ........+..... ..-...-+----.+-.+
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~----~~--~~e~~~Avdg~~l~~~~~~~~~~~~~~~~~--~~~~lt~gEiGC~lSH~ 75 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKL----GI--NFEFFDAVDGRDLSEDELFRRYDPELFKKR--YGRPLTPGEIGCALSHI 75 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc----CC--ceEEEEeecccccchHHHHHHhhhhhhhcc--ccccCCcceEeehhhHH
Confidence 46777888899999998887754 22 34455444331 11 11111111111000 00000011111156677
Q ss_pred HHHHHHHHHCCCccEEEEeCCceEEeHHHHHHHHh
Q psy14347 126 MGFKWAANYCKHSKFYFFADDDFYVSTRNVLRFLR 160 (316)
Q Consensus 126 ~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~L~ 160 (316)
.+++-+.+. +.++.+-..||+.++.+ +.+.|.
T Consensus 76 ~~w~~~v~~--~~~~~lIlEDDv~~~~~-f~~~l~ 107 (200)
T PF01755_consen 76 KAWQRIVDS--GLEYALILEDDVIFDPD-FKEFLE 107 (200)
T ss_pred HHHHHHHHc--CCCeEEEEecccccccc-HHHHHH
Confidence 788888874 68999999999999864 444443
No 12
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=95.97 E-value=0.1 Score=45.75 Aligned_cols=188 Identities=13% Similarity=0.100 Sum_probs=85.3
Q ss_pred eEEEEEEcCCCCHHHHHHHHHHhcCCcCCCCcCEEEEEEecCCCCChhHHHHHHHHHHHCCCE--EEeeeccCCCCch--
Q psy14347 46 RVVYIVKSALRHFERRLAIRQSWGYEKRFSDVPIVTVFILGYDPDNEGLQIEIAEESERYNDI--VQAKFIDSYFNNT-- 121 (316)
Q Consensus 46 ~lli~V~S~~~~~~rR~~IR~TW~~~~~~~~~~v~~vFvlG~~~~~~~~~~~l~~E~~~~~DI--l~~d~~DsY~Nlt-- 121 (316)
.+.|+|.+.-+...-++.|+.--... ...++++++...+. + ...+.+++-.+.+... -.+.. -.|.-
T Consensus 2 ~v~Vvip~~~~~~~l~~~l~sl~~~~----~~~~~v~vvd~~~~-~-~~~~~~~~~~~~~~~~~v~vi~~---~~~~g~~ 72 (228)
T PF13641_consen 2 RVSVVIPAYNEDDVLRRCLESLLAQD----YPRLEVVVVDDGSD-D-ETAEILRALAARYPRVRVRVIRR---PRNPGPG 72 (228)
T ss_dssp -EEEE--BSS-HHHHHHHHHHHTTSH----HHTEEEEEEEE-SS-S--GCTTHHHHHHTTGG-GEEEEE-------HHHH
T ss_pred EEEEEEEecCCHHHHHHHHHHHHcCC----CCCeEEEEEECCCC-h-HHHHHHHHHHHHcCCCceEEeec---CCCCCcc
Confidence 35566666544445555555554332 13456665554433 2 2233455555566543 22221 13332
Q ss_pred HHHHHHHHHHHHHCCCccEEEEeCCceEEeHHHHHHHHhcCCCCCcccccchhhhhccccccccCCCCCcceEEEEeecC
Q psy14347 122 IKTMMGFKWAANYCKHSKFYFFADDDFYVSTRNVLRFLRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKLFSGFVFVS 201 (316)
Q Consensus 122 ~K~~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ly~G~~~~~ 201 (316)
.|. .+++++.+.. ..+|++.+|||+.+.++-|...+.... .+...+..|.+.-.
T Consensus 73 ~k~-~a~n~~~~~~-~~d~i~~lD~D~~~~p~~l~~~~~~~~------------------------~~~~~~v~~~~~~~ 126 (228)
T PF13641_consen 73 GKA-RALNEALAAA-RGDYILFLDDDTVLDPDWLERLLAAFA------------------------DPGVGAVGGPVFPD 126 (228)
T ss_dssp HHH-HHHHHHHHH----SEEEEE-SSEEE-CHHHHHHHHHHH------------------------BSS--EEEEEEEET
T ss_pred hHH-HHHHHHHHhc-CCCEEEEECCCcEECHHHHHHHHHHHH------------------------hCCCCeEeeeEeec
Confidence 333 3557777776 699999999999999888777665420 02222333333210
Q ss_pred cC-------ccCCCCCccccccCCCCCCcc-cccccceEEecHHHHHHHHHHhccCCCCCCCchHHHHhhHHcCCceee
Q psy14347 202 SP-------HRHYTSKWYISLQEYPYHLWP-PYVTAGSYVVSREVLLDFYFASHFTKHFRFDDIYLGILAKKTNTEPFH 272 (316)
Q Consensus 202 ~p-------~r~~~~Kw~v~~~~y~~~~yP-~y~~G~~yvlS~~~~~~l~~~s~~~~~~~~eDv~~Gi~~~k~gi~~~~ 272 (316)
.. .+.....|+...... ...+. .++.|++.++.+++++++-.-. +....||..++.-+.+.|.+...
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~~rr~~~~~~g~fd---~~~~~eD~~l~~r~~~~G~~~~~ 201 (228)
T PF13641_consen 127 NDRNWLTRLQDLFFARWHLRFRSG-RRALGVAFLSGSGMLFRRSALEEVGGFD---PFILGEDFDLCLRLRAAGWRIVY 201 (228)
T ss_dssp TCCCEEEE-TT--S-EETTTS-TT--B----S-B--TEEEEEHHHHHHH-S-----SSSSSHHHHHHHHHHHTT--EEE
T ss_pred CCCCHHHHHHHHHHhhhhhhhhhh-hcccceeeccCcEEEEEHHHHHHhCCCC---CCCcccHHHHHHHHHHCCCcEEE
Confidence 00 000001111100000 01111 4467999999999999884211 14456999999999988877654
No 13
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=95.58 E-value=0.37 Score=46.44 Aligned_cols=190 Identities=13% Similarity=0.055 Sum_probs=97.7
Q ss_pred eEEEEEEcCCCCHHHHHHHHHHhcCCcCCCCcCEEEEEEecCCCCChhHHHHHHHHHHHCCC--EEEeeeccCCCCchHH
Q psy14347 46 RVVYIVKSALRHFERRLAIRQSWGYEKRFSDVPIVTVFILGYDPDNEGLQIEIAEESERYND--IVQAKFIDSYFNNTIK 123 (316)
Q Consensus 46 ~lli~V~S~~~~~~rR~~IR~TW~~~~~~~~~~v~~vFvlG~~~~~~~~~~~l~~E~~~~~D--Il~~d~~DsY~Nlt~K 123 (316)
.+-|+|.+.-+...-.+.|+ +..++.. + .+.++++...+. |++. +.+++-.++|.+ +.... ...-.....|
T Consensus 42 ~VSViiP~~nee~~l~~~L~-Sl~~q~Y-p--~~EIivvdd~s~-D~t~-~iv~~~~~~~p~~~i~~v~-~~~~~G~~~K 114 (373)
T TIGR03472 42 PVSVLKPLHGDEPELYENLA-SFCRQDY-P--GFQMLFGVQDPD-DPAL-AVVRRLRADFPDADIDLVI-DARRHGPNRK 114 (373)
T ss_pred CeEEEEECCCCChhHHHHHH-HHHhcCC-C--CeEEEEEeCCCC-CcHH-HHHHHHHHhCCCCceEEEE-CCCCCCCChH
Confidence 34555554433333344554 3333322 2 367777766554 4432 334433456666 32221 1111222356
Q ss_pred HHHHHHHHHHHCCCccEEEEeCCceEEeHHHHHHHHhcCCCCCcccccchhhhhccccccccCCCCCcceEEEEeecCcC
Q psy14347 124 TMMGFKWAANYCKHSKFYFFADDDFYVSTRNVLRFLRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKLFSGFVFVSSP 203 (316)
Q Consensus 124 ~~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ly~G~~~~~~p 203 (316)
.-+..+ +.+.+ +.++++.+|+|+.+..+-|.+.+.... ++...+..|... ..+
T Consensus 115 ~~~l~~-~~~~a-~ge~i~~~DaD~~~~p~~L~~lv~~~~------------------------~~~v~~V~~~~~-~~~ 167 (373)
T TIGR03472 115 VSNLIN-MLPHA-RHDILVIADSDISVGPDYLRQVVAPLA------------------------DPDVGLVTCLYR-GRP 167 (373)
T ss_pred HHHHHH-HHHhc-cCCEEEEECCCCCcChhHHHHHHHHhc------------------------CCCcceEecccc-CCC
Confidence 655444 44554 789999999999999888877665431 122223322211 111
Q ss_pred ccCCC--------CCccccccC--CCCCCcccccccceEEecHHHHHHHHHHhccCCCCCCCchHHHHhhHHcCCcee
Q psy14347 204 HRHYT--------SKWYISLQE--YPYHLWPPYVTAGSYVVSREVLLDFYFASHFTKHFRFDDIYLGILAKKTNTEPF 271 (316)
Q Consensus 204 ~r~~~--------~Kw~v~~~~--y~~~~yP~y~~G~~yvlS~~~~~~l~~~s~~~~~~~~eDv~~Gi~~~k~gi~~~ 271 (316)
..... .-++.|... ... .-+.+|.|+++++.+++.+.+---.. ....-.||+.+|..+.+.|.+..
T Consensus 168 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~G~~~a~RR~~l~~iGGf~~-~~~~~~ED~~l~~~i~~~G~~v~ 243 (373)
T TIGR03472 168 VPGFWSRLGAMGINHNFLPSVMVARAL-GRARFCFGATMALRRATLEAIGGLAA-LAHHLADDYWLGELVRALGLRVV 243 (373)
T ss_pred CCCHHHHHHHHHhhhhhhHHHHHHHhc-cCCccccChhhheeHHHHHHcCChHH-hcccchHHHHHHHHHHHcCCeEE
Confidence 11000 011211100 000 11346889999999999998742211 11223599999999988887664
No 14
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=95.46 E-value=1.2 Score=38.25 Aligned_cols=136 Identities=14% Similarity=0.081 Sum_probs=80.1
Q ss_pred EEEEEEecCCCCChhHHHHHHHHHHHCC--CEEEeeeccCCCCchHHHHHHHHHHHHHCCCccEEEEeCCceEEeHHHHH
Q psy14347 79 IVTVFILGYDPDNEGLQIEIAEESERYN--DIVQAKFIDSYFNNTIKTMMGFKWAANYCKHSKFYFFADDDFYVSTRNVL 156 (316)
Q Consensus 79 v~~vFvlG~~~~~~~~~~~l~~E~~~~~--DIl~~d~~DsY~Nlt~K~~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~ 156 (316)
+.+++|...+. +.+ .+.+++-.+.+. ++......... ....|.- .++.+.+.+ ..+|++.+|+|+.+..+.|.
T Consensus 31 ~eiivVdd~s~-d~t-~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~-~~n~g~~~a-~~d~i~~~D~D~~~~~~~l~ 105 (196)
T cd02520 31 YEILFCVQDED-DPA-IPVVRKLIAKYPNVDARLLIGGEKV-GINPKVN-NLIKGYEEA-RYDILVISDSDISVPPDYLR 105 (196)
T ss_pred eEEEEEeCCCc-chH-HHHHHHHHHHCCCCcEEEEecCCcC-CCCHhHH-HHHHHHHhC-CCCEEEEECCCceEChhHHH
Confidence 67777776665 433 344555555555 33222211111 1223433 344455554 68999999999999887777
Q ss_pred HHHhcCCCCCcccccchhhhhccccccccCCCCCcceEEEEeecCcCccCCCCCccccccCCCCCCcccccccceEEecH
Q psy14347 157 RFLRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKLFSGFVFVSSPHRHYTSKWYISLQEYPYHLWPPYVTAGSYVVSR 236 (316)
Q Consensus 157 ~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ly~G~~~~~~p~r~~~~Kw~v~~~~y~~~~yP~y~~G~~yvlS~ 236 (316)
..+.... .+...+..|. ++.|++.++.+
T Consensus 106 ~l~~~~~------------------------~~~~~~v~~~----------------------------~~~g~~~~~r~ 133 (196)
T cd02520 106 RMVAPLM------------------------DPGVGLVTCL----------------------------CAFGKSMALRR 133 (196)
T ss_pred HHHHHhh------------------------CCCCCeEEee----------------------------cccCceeeeEH
Confidence 6665421 1222232221 56799999999
Q ss_pred HHHHHHHHHhccCCCCCCCchHHHHhhHHcCCceee
Q psy14347 237 EVLLDFYFASHFTKHFRFDDIYLGILAKKTNTEPFH 272 (316)
Q Consensus 237 ~~~~~l~~~s~~~~~~~~eDv~~Gi~~~k~gi~~~~ 272 (316)
++++++-.-.. ......||..++.-+.+.|.+...
T Consensus 134 ~~~~~~ggf~~-~~~~~~eD~~l~~rl~~~G~~i~~ 168 (196)
T cd02520 134 EVLDAIGGFEA-FADYLAEDYFLGKLIWRLGYRVVL 168 (196)
T ss_pred HHHHhccChHH-HhHHHHHHHHHHHHHHHcCCeEEE
Confidence 99998732211 122336999999988888866643
No 15
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.39 E-value=0.57 Score=38.16 Aligned_cols=86 Identities=17% Similarity=0.200 Sum_probs=56.7
Q ss_pred CccEEEEeCCceEEeHHHHHHHHhcCCCCCcccccchhhhhccccccccCCCCCcceEEEEeecCcCccCCCCCcccccc
Q psy14347 137 HSKFYFFADDDFYVSTRNVLRFLRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKLFSGFVFVSSPHRHYTSKWYISLQ 216 (316)
Q Consensus 137 ~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ly~G~~~~~~p~r~~~~Kw~v~~~ 216 (316)
+.+|++..|||..+..+.+...+..... .+...++.|.
T Consensus 74 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~-----------------------~~~~~~~~~~------------------- 111 (166)
T cd04186 74 KGDYVLLLNPDTVVEPGALLELLDAAEQ-----------------------DPDVGIVGPK------------------- 111 (166)
T ss_pred CCCEEEEECCCcEECccHHHHHHHHHHh-----------------------CCCceEEEcc-------------------
Confidence 7899999999999998887776653210 1222222211
Q ss_pred CCCCCCcccccccceEEecHHHHHHHHHHhccCCCCCCCchHHHHhhHHcCCceeecCC
Q psy14347 217 EYPYHLWPPYVTAGSYVVSREVLLDFYFASHFTKHFRFDDIYLGILAKKTNTEPFHCGE 275 (316)
Q Consensus 217 ~y~~~~yP~y~~G~~yvlS~~~~~~l~~~s~~~~~~~~eDv~~Gi~~~k~gi~~~~~~~ 275 (316)
+.|++.++++++++.+-.-.... ....||..+..-+...|.+....+.
T Consensus 112 ----------~~~~~~~~~~~~~~~~~~~~~~~-~~~~eD~~~~~~~~~~g~~i~~~~~ 159 (166)
T cd04186 112 ----------VSGAFLLVRREVFEEVGGFDEDF-FLYYEDVDLCLRARLAGYRVLYVPQ 159 (166)
T ss_pred ----------CceeeEeeeHHHHHHcCCCChhh-hccccHHHHHHHHHHcCCeEEEccc
Confidence 57999999999988763211111 1256899988877777877665544
No 16
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.00 E-value=0.78 Score=38.62 Aligned_cols=123 Identities=8% Similarity=-0.069 Sum_probs=68.5
Q ss_pred HHHHHHHHHCCCccEEEEeCCceEEeHHHHHHHHhcCCCCCcccccchhhhhccccccccCCCCCcceEEEEeecCcCcc
Q psy14347 126 MGFKWAANYCKHSKFYFFADDDFYVSTRNVLRFLRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKLFSGFVFVSSPHR 205 (316)
Q Consensus 126 ~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ly~G~~~~~~p~r 205 (316)
.+++.+.+.+ +.+|++..|+|..+..+.+...+..... .+...+.+|......+..
T Consensus 65 ~a~n~~~~~a-~~~~v~~ld~D~~~~~~~~~~~~~~~~~-----------------------~~~~~~v~g~~~~~~~~~ 120 (202)
T cd06433 65 DAMNKGIALA-TGDIIGFLNSDDTLLPGALLAVVAAFAE-----------------------HPEVDVVYGDVLLVDENG 120 (202)
T ss_pred HHHHHHHHHc-CCCEEEEeCCCcccCchHHHHHHHHHHh-----------------------CCCccEEEeeeEEEcCCC
Confidence 4566666776 6899999999999999888887733210 123345555443100000
Q ss_pred CCCCCccccccCCCCCCcccccccceEEecHHHHHHHHHHhccCCCCCCCchHHHHhhHHcCCceeecC
Q psy14347 206 HYTSKWYISLQEYPYHLWPPYVTAGSYVVSREVLLDFYFASHFTKHFRFDDIYLGILAKKTNTEPFHCG 274 (316)
Q Consensus 206 ~~~~Kw~v~~~~y~~~~yP~y~~G~~yvlS~~~~~~l~~~s~~~~~~~~eDv~~Gi~~~k~gi~~~~~~ 274 (316)
.....+.........-....++.|++.++++++.+.+-. ........||..+..-+...|......+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--f~~~~~~~~D~~~~~r~~~~g~~~~~~~ 187 (202)
T cd06433 121 RVIGRRRPPPFLDKFLLYGMPICHQATFFRRSLFEKYGG--FDESYRIAADYDLLLRLLLAGKIFKYLP 187 (202)
T ss_pred CcccCCCCcchhhhHHhhcCcccCcceEEEHHHHHHhCC--CchhhCchhhHHHHHHHHHcCCceEecc
Confidence 001111001111111223445678888999999988732 1112234578888777777776665443
No 17
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.97 E-value=0.45 Score=40.84 Aligned_cols=172 Identities=14% Similarity=0.029 Sum_probs=84.7
Q ss_pred HHHHHHhcCCcCCCCcCEEEEEEecCCCCChhHHHHHHHHHHHCCC-EEEeeeccCCCCchHHHHHHHHHHHHHCCCccE
Q psy14347 62 LAIRQSWGYEKRFSDVPIVTVFILGYDPDNEGLQIEIAEESERYND-IVQAKFIDSYFNNTIKTMMGFKWAANYCKHSKF 140 (316)
Q Consensus 62 ~~IR~TW~~~~~~~~~~v~~vFvlG~~~~~~~~~~~l~~E~~~~~D-Il~~d~~DsY~Nlt~K~~~~l~w~~~~c~~~~f 140 (316)
..|.+++.+........+.++++-..+. +. ..+.+++-.+++.. +.......+ ... ...+......+ ..+|
T Consensus 11 ~~l~~~l~sl~~q~~~~~eiiVvddgS~-d~-t~~~~~~~~~~~~~~~~~~~~~~~-~G~----~~~~n~g~~~~-~g~~ 82 (214)
T cd04196 11 KYLREQLDSILAQTYKNDELIISDDGST-DG-TVEIIKEYIDKDPFIIILIRNGKN-LGV----ARNFESLLQAA-DGDY 82 (214)
T ss_pred HHHHHHHHHHHhCcCCCeEEEEEeCCCC-CC-cHHHHHHHHhcCCceEEEEeCCCC-ccH----HHHHHHHHHhC-CCCE
Confidence 3455555544322222466776655554 33 33444444444542 333322221 122 22333344444 7899
Q ss_pred EEEeCCceEEeHHHHHHHHhcCCCCCcccccchhhhhccccccccCCCCCcceEEEEee--cC-cCccCCCCCc----cc
Q psy14347 141 YFFADDDFYVSTRNVLRFLRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKLFSGFVF--VS-SPHRHYTSKW----YI 213 (316)
Q Consensus 141 vlk~DDD~~Vn~~~L~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ly~G~~~--~~-~p~r~~~~Kw----~v 213 (316)
++..|+|..+.++.|.+.+..... .+...+..|... .. .... ....+ ..
T Consensus 83 v~~ld~Dd~~~~~~l~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 138 (214)
T cd04196 83 VFFCDQDDIWLPDKLERLLKAFLK-----------------------DDKPLLVYSDLELVDENGNPI-GESFFEYQKIK 138 (214)
T ss_pred EEEECCCcccChhHHHHHHHHHhc-----------------------CCCceEEecCcEEECCCCCCc-ccccccccccC
Confidence 999999999988877777764111 122334444332 11 1100 00000 00
Q ss_pred cccCCCCCCcccccccceEEecHHHHHHHHHHhccCCCCCCCchHHHHhhHHcC
Q psy14347 214 SLQEYPYHLWPPYVTAGSYVVSREVLLDFYFASHFTKHFRFDDIYLGILAKKTN 267 (316)
Q Consensus 214 ~~~~y~~~~yP~y~~G~~yvlS~~~~~~l~~~s~~~~~~~~eDv~~Gi~~~k~g 267 (316)
+...+........+.|++.++.+++++++..-.... ...||.++.+.+.+.|
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~--~~~~D~~~~~~~~~~~ 190 (214)
T cd04196 139 PGTSFNNLLFQNVVTGCTMAFNRELLELALPFPDAD--VIMHDWWLALLASAFG 190 (214)
T ss_pred CccCHHHHHHhCccCCceeeEEHHHHHhhccccccc--cccchHHHHHHHHHcC
Confidence 000111112234567889999999999874322211 4678988877666544
No 18
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=94.46 E-value=0.11 Score=47.25 Aligned_cols=71 Identities=8% Similarity=0.018 Sum_probs=52.7
Q ss_pred ccceEEecHHHHHHHHHHhc----cCCCCCCCchHHHHhhHHcCCceeecCCceecCCCCCcccc------ceeEEEecc
Q psy14347 228 TAGSYVVSREVLLDFYFASH----FTKHFRFDDIYLGILAKKTNTEPFHCGEFYFYKKDYSLHNY------QYVIASHGY 297 (316)
Q Consensus 228 ~G~~yvlS~~~~~~l~~~s~----~~~~~~~eDv~~Gi~~~k~gi~~~~~~~f~~~~~~~~~c~~------~~~i~~H~~ 297 (316)
+|+|+.+|..+|+.|...-. ..+.+.--|--+..|+..+|++.+..++|+.....-+.-.+ ..+++.|.+
T Consensus 12 GGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~lgv~LT~e~g~hQ~Di~Gd~~G~~~a~~~~pl~SlHH~ 91 (255)
T PF04646_consen 12 GGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAELGVPLTKEPGFHQMDIRGDPSGFLEAHPLAPLVSLHHW 91 (255)
T ss_pred cCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCceecCCceeEeeccCcceeeecCCCCceeeeeeh
Confidence 89999999999999987632 34555556888999998899999999999876543333221 346788876
Q ss_pred C
Q psy14347 298 G 298 (316)
Q Consensus 298 ~ 298 (316)
+
T Consensus 92 ~ 92 (255)
T PF04646_consen 92 D 92 (255)
T ss_pred h
Confidence 4
No 19
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=94.36 E-value=2.6 Score=40.80 Aligned_cols=163 Identities=14% Similarity=0.118 Sum_probs=84.4
Q ss_pred EEEEEEecCCCCChhHHHHHHHHHHHCC---CEEEeeeccCCCCchHHH---HHHHHHHHHHCCCccEEEEeCCceEEeH
Q psy14347 79 IVTVFILGYDPDNEGLQIEIAEESERYN---DIVQAKFIDSYFNNTIKT---MMGFKWAANYCKHSKFYFFADDDFYVST 152 (316)
Q Consensus 79 v~~vFvlG~~~~~~~~~~~l~~E~~~~~---DIl~~d~~DsY~Nlt~K~---~~~l~w~~~~c~~~~fvlk~DDD~~Vn~ 152 (316)
.+++++-..+. |.+ .+.+++-.+++. .+......+.-.+-.-|. -.+++.+.+.+++.+|++.+|+|+.+.+
T Consensus 71 ~eIIVVDd~St-D~T-~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p 148 (384)
T TIGR03469 71 LHVILVDDHST-DGT-ADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGP 148 (384)
T ss_pred eEEEEEeCCCC-CcH-HHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCCh
Confidence 56776666555 433 223332233343 344443322222223453 3466666666656899999999999998
Q ss_pred HHHHHHHhcCCCCCcccccchhhhhccccccccCCCCCcceEEEEeecCcCccCCCCCccccc------cCCC------C
Q psy14347 153 RNVLRFLRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKLFSGFVFVSSPHRHYTSKWYISL------QEYP------Y 220 (316)
Q Consensus 153 ~~L~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ly~G~~~~~~p~r~~~~Kw~v~~------~~y~------~ 220 (316)
+.|.+.+..... ....+..|..... . .....+..++. ..|| .
T Consensus 149 ~~l~~lv~~~~~------------------------~~~~~vs~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (384)
T TIGR03469 149 DNLARLVARARA------------------------EGLDLVSLMVRLR-C-ESFWEKLLIPAFVFFFQKLYPFRWVNDP 202 (384)
T ss_pred hHHHHHHHHHHh------------------------CCCCEEEeccccc-C-CCHHHHHHHHHHHHHHHHhcchhhhcCC
Confidence 888777654211 1112322222100 0 00000000000 0011 0
Q ss_pred CCcccccccceEEecHHHHHHHHHHhccCCCCCCCchHHHHhhHHcCCce
Q psy14347 221 HLWPPYVTAGSYVVSREVLLDFYFASHFTKHFRFDDIYLGILAKKTNTEP 270 (316)
Q Consensus 221 ~~yP~y~~G~~yvlS~~~~~~l~~~s~~~~~~~~eDv~~Gi~~~k~gi~~ 270 (316)
......+.|++.++++++.+++---.. ......||+.++..+.+.|.+.
T Consensus 203 ~~~~~~~~G~~~lirr~~~~~vGGf~~-~~~~~~ED~~L~~r~~~~G~~v 251 (384)
T TIGR03469 203 RRRTAAAAGGCILIRREALERIGGIAA-IRGALIDDCTLAAAVKRSGGRI 251 (384)
T ss_pred CccceeecceEEEEEHHHHHHcCCHHH-HhhCcccHHHHHHHHHHcCCcE
Confidence 111234679999999999998732211 1112479999999888888544
No 20
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=94.30 E-value=3.4 Score=36.21 Aligned_cols=163 Identities=12% Similarity=-0.012 Sum_probs=82.4
Q ss_pred CEEEEEEecCCCCChhHHHHHHHHHHHCCCEEEeeeccCCCCchHHHHHHHHHHHHHCCCccEEEEeCCceEEeHHHHHH
Q psy14347 78 PIVTVFILGYDPDNEGLQIEIAEESERYNDIVQAKFIDSYFNNTIKTMMGFKWAANYCKHSKFYFFADDDFYVSTRNVLR 157 (316)
Q Consensus 78 ~v~~vFvlG~~~~~~~~~~~l~~E~~~~~DIl~~d~~DsY~Nlt~K~~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~ 157 (316)
.++++.+-+.+. ++ ....++...+++..+....-.+ ... -.+++...+.. +.+|++.+|+|..+.+.-|.+
T Consensus 31 ~~evivvd~~s~-d~-~~~~~~~~~~~~~~v~~i~~~~--~~~----~~a~N~g~~~a-~~d~v~~lD~D~~~~~~~l~~ 101 (249)
T cd02525 31 LIEIIVVDGGST-DG-TREIVQEYAAKDPRIRLIDNPK--RIQ----SAGLNIGIRNS-RGDIIIRVDAHAVYPKDYILE 101 (249)
T ss_pred ccEEEEEeCCCC-cc-HHHHHHHHHhcCCeEEEEeCCC--CCc----hHHHHHHHHHh-CCCEEEEECCCccCCHHHHHH
Confidence 456666655554 32 3344444444443344443221 111 13566666654 789999999999999877777
Q ss_pred HHhcCCCCCcccccchhhhhccccccccCCCCCcceEEEEeec--CcCcc-----CCCCCccccccCC--CCCCcccccc
Q psy14347 158 FLRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKLFSGFVFV--SSPHR-----HYTSKWYISLQEY--PYHLWPPYVT 228 (316)
Q Consensus 158 ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ly~G~~~~--~~p~r-----~~~~Kw~v~~~~y--~~~~yP~y~~ 228 (316)
.+..... ++..+..|.... ..+.. ...+.+......+ +....=.++.
T Consensus 102 ~~~~~~~------------------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (249)
T cd02525 102 LVEALKR------------------------TGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAYRGGAVKIGYVDT 157 (249)
T ss_pred HHHHHhc------------------------CCCCEEecceecCCCChHHHHHHHHhhchhccCCccccccccccccccc
Confidence 6653211 122233333221 11100 0000000000000 0000001456
Q ss_pred cceEEecHHHHHHHHHHhccCCCCCCCchHHHHhhHHcCCceeecCC
Q psy14347 229 AGSYVVSREVLLDFYFASHFTKHFRFDDIYLGILAKKTNTEPFHCGE 275 (316)
Q Consensus 229 G~~yvlS~~~~~~l~~~s~~~~~~~~eDv~~Gi~~~k~gi~~~~~~~ 275 (316)
|++.++++++.+++.- ........||..++.-+.+.|.+....+.
T Consensus 158 ~~~~~~~~~~~~~~g~--~~~~~~~~eD~~l~~r~~~~G~~~~~~~~ 202 (249)
T cd02525 158 VHHGAYRREVFEKVGG--FDESLVRNEDAELNYRLRKAGYKIWLSPD 202 (249)
T ss_pred cccceEEHHHHHHhCC--CCcccCccchhHHHHHHHHcCcEEEEcCC
Confidence 7888999999887632 11223456999998888888877765443
No 21
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=94.18 E-value=1.1 Score=39.37 Aligned_cols=160 Identities=11% Similarity=-0.002 Sum_probs=83.3
Q ss_pred CEEEEEEecCCCCChhHHHHHHHHHHHCC-CEEEeeeccCCCCchHHHHHHHHHHHHHCC-CccEEEEeCCceEEeHHHH
Q psy14347 78 PIVTVFILGYDPDNEGLQIEIAEESERYN-DIVQAKFIDSYFNNTIKTMMGFKWAANYCK-HSKFYFFADDDFYVSTRNV 155 (316)
Q Consensus 78 ~v~~vFvlG~~~~~~~~~~~l~~E~~~~~-DIl~~d~~DsY~Nlt~K~~~~l~w~~~~c~-~~~fvlk~DDD~~Vn~~~L 155 (316)
.++++++-+.+. +.+....+++=.++++ ++...... .|.-.| ..++.++.+.+. +.+|++..|+|+.+.++.|
T Consensus 28 ~~eiiVvdd~s~-D~t~~~~i~~~~~~~~~~i~~i~~~---~~~G~~-~~a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l 102 (236)
T cd06435 28 NFEVIVIDNNTK-DEALWKPVEAHCAQLGERFRFFHVE---PLPGAK-AGALNYALERTAPDAEIIAVIDADYQVEPDWL 102 (236)
T ss_pred CcEEEEEeCCCC-chhHHHHHHHHHHHhCCcEEEEEcC---CCCCCc-hHHHHHHHHhcCCCCCEEEEEcCCCCcCHHHH
Confidence 356665555544 4443333322222333 44333222 233333 345777777663 4799999999999999888
Q ss_pred HHHHhcCCCCCcccccchhhhhccccccccCCCCCcceEEEEeecCcCccCCCCCccccc------cCC------CCCCc
Q psy14347 156 LRFLRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKLFSGFVFVSSPHRHYTSKWYISL------QEY------PYHLW 223 (316)
Q Consensus 156 ~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ly~G~~~~~~p~r~~~~Kw~v~~------~~y------~~~~y 223 (316)
...+..... +...+..|... .++....++... ..+ ....=
T Consensus 103 ~~l~~~~~~------------------------~~~~~v~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (236)
T cd06435 103 KRLVPIFDD------------------------PRVGFVQAPQD----YRDGEESLFKRMCYAEYKGFFDIGMVSRNERN 154 (236)
T ss_pred HHHHHHhcC------------------------CCeeEEecCcc----ccCCCccHHHHHHhHHHHHHHHHHhccccccC
Confidence 887765311 11122222110 011111111000 000 00000
Q ss_pred ccccccceEEecHHHHHHHHHHhccCCCCCCCchHHHHhhHHcCCceeec
Q psy14347 224 PPYVTAGSYVVSREVLLDFYFASHFTKHFRFDDIYLGILAKKTNTEPFHC 273 (316)
Q Consensus 224 P~y~~G~~yvlS~~~~~~l~~~s~~~~~~~~eDv~~Gi~~~k~gi~~~~~ 273 (316)
-.++.|++.++++++++.+---. +.+..||+-++.-+.+.|.+....
T Consensus 155 ~~~~~g~~~~~rr~~~~~iGgf~---~~~~~eD~dl~~r~~~~G~~~~~~ 201 (236)
T cd06435 155 AIIQHGTMCLIRRSALDDVGGWD---EWCITEDSELGLRMHEAGYIGVYV 201 (236)
T ss_pred ceEEecceEEEEHHHHHHhCCCC---CccccchHHHHHHHHHCCcEEEEc
Confidence 12567888999999999873111 223579999999888888766543
No 22
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=94.09 E-value=4.5 Score=37.34 Aligned_cols=51 Identities=12% Similarity=0.087 Sum_probs=34.9
Q ss_pred ccccccceEEecHHHHHHHHHHhccCCCCCCCchHHHHhhHHcCCceeecC
Q psy14347 224 PPYVTAGSYVVSREVLLDFYFASHFTKHFRFDDIYLGILAKKTNTEPFHCG 274 (316)
Q Consensus 224 P~y~~G~~yvlS~~~~~~l~~~s~~~~~~~~eDv~~Gi~~~k~gi~~~~~~ 274 (316)
-+++.|++.++++++..++---.........||+-+..-+.+.|-+....|
T Consensus 168 ~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p 218 (299)
T cd02510 168 SPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVP 218 (299)
T ss_pred CccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcCCeEEEee
Confidence 356789999999999998732222222234699998877777886655443
No 23
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.92 E-value=1.3 Score=37.82 Aligned_cols=93 Identities=16% Similarity=0.129 Sum_probs=58.0
Q ss_pred HHHHHHHHHHCCCccEEEEeCCceEEeHHHHHHHHhcCCCCCcccccchhhhhccccccccCCCCCcceEEEEeecCcCc
Q psy14347 125 MMGFKWAANYCKHSKFYFFADDDFYVSTRNVLRFLRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKLFSGFVFVSSPH 204 (316)
Q Consensus 125 ~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ly~G~~~~~~p~ 204 (316)
-.+++++. ....+|++..|+|..+..+.|...+.... .+...+..|.....
T Consensus 69 n~~~~~a~--~~~~d~v~~ld~D~~~~~~~l~~l~~~~~------------------------~~~~~~~~~~~~~~--- 119 (202)
T cd04185 69 YEGVRRAY--ELGYDWIWLMDDDAIPDPDALEKLLAYAD------------------------KDNPQFLAPLVLDP--- 119 (202)
T ss_pred HHHHHHHh--ccCCCEEEEeCCCCCcChHHHHHHHHHHh------------------------cCCceEecceeEcC---
Confidence 34566665 23789999999999999877666554321 12223333332210
Q ss_pred cCCCCCccccccCCCCCCcccccccceEEecHHHHHHHHHHhccCC--CCCCCchHHHHhhHHcCCce
Q psy14347 205 RHYTSKWYISLQEYPYHLWPPYVTAGSYVVSREVLLDFYFASHFTK--HFRFDDIYLGILAKKTNTEP 270 (316)
Q Consensus 205 r~~~~Kw~v~~~~y~~~~yP~y~~G~~yvlS~~~~~~l~~~s~~~~--~~~~eDv~~Gi~~~k~gi~~ 270 (316)
.+ .+++.++.+++++.+- ...+ ....||+.++.-+.+.|...
T Consensus 120 ---~~------------------~~~~~~~~~~~~~~~g---~~~~~~~~~~eD~~~~~r~~~~G~~i 163 (202)
T cd04185 120 ---DG------------------SFVGVLISRRVVEKIG---LPDKEFFIWGDDTEYTLRASKAGPGI 163 (202)
T ss_pred ---CC------------------ceEEEEEeHHHHHHhC---CCChhhhccchHHHHHHHHHHcCCcE
Confidence 00 3456789999988762 1111 23469999998888888766
No 24
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.78 E-value=4 Score=35.19 Aligned_cols=158 Identities=11% Similarity=0.006 Sum_probs=80.8
Q ss_pred EEEEEEecCCCCChhHHHHHHHHHHHC--CCEEEeeeccCCCCchHHHHHHHHHHHHHCCCccEEEEeCCceEEeHHHHH
Q psy14347 79 IVTVFILGYDPDNEGLQIEIAEESERY--NDIVQAKFIDSYFNNTIKTMMGFKWAANYCKHSKFYFFADDDFYVSTRNVL 156 (316)
Q Consensus 79 v~~vFvlG~~~~~~~~~~~l~~E~~~~--~DIl~~d~~DsY~Nlt~K~~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~ 156 (316)
++++.|-+.+. +. ..+.++ +.... ..+....... -.|. -|. .++++..+.+ ..+|++.+|+|..+..+-|.
T Consensus 29 ~eiivvdd~s~-d~-t~~~~~-~~~~~~~~~v~~~~~~~-~~~~-g~~-~a~n~g~~~~-~~d~i~~~D~D~~~~~~~l~ 101 (229)
T cd04192 29 FEVILVDDHST-DG-TVQILE-FAAAKPNFQLKILNNSR-VSIS-GKK-NALTTAIKAA-KGDWIVTTDADCVVPSNWLL 101 (229)
T ss_pred eEEEEEcCCCC-cC-hHHHHH-HHHhCCCcceEEeeccC-cccc-hhH-HHHHHHHHHh-cCCEEEEECCCcccCHHHHH
Confidence 56665655444 32 333344 23333 3444444433 1232 222 3456666665 78999999999999988777
Q ss_pred HHHhcCCCCCcccccchhhhhccccccccCCCCCcceEEEEeecCcCcc---C-CCCCccccc---cCCCCCCccccccc
Q psy14347 157 RFLRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKLFSGFVFVSSPHR---H-YTSKWYISL---QEYPYHLWPPYVTA 229 (316)
Q Consensus 157 ~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ly~G~~~~~~p~r---~-~~~Kw~v~~---~~y~~~~yP~y~~G 229 (316)
+.+.... ......++|......+.. . ..-.+.... ........|..+.|
T Consensus 102 ~l~~~~~------------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 157 (229)
T cd04192 102 TFVAFIQ------------------------KEQIGLVAGPVIYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNG 157 (229)
T ss_pred HHHHHhh------------------------cCCCcEEeeeeeecCCccHHHHHHHHHHHHHHHHHhhHHHhcCcccccc
Confidence 7665321 122234444433110100 0 000000000 00112234566789
Q ss_pred ceEEecHHHHHHHHHHhccCCCCCCCchHHHHhhHHcCC
Q psy14347 230 GSYVVSREVLLDFYFASHFTKHFRFDDIYLGILAKKTNT 268 (316)
Q Consensus 230 ~~yvlS~~~~~~l~~~s~~~~~~~~eDv~~Gi~~~k~gi 268 (316)
++.++++++++++---.. ......||..++.-+.+.|.
T Consensus 158 ~~~~~rr~~~~~~ggf~~-~~~~~~eD~~~~~~~~~~g~ 195 (229)
T cd04192 158 ANMAYRKEAFFEVGGFEG-NDHIASGDDELLLAKVASKY 195 (229)
T ss_pred ceEEEEHHHHHHhcCCcc-ccccccCCHHHHHHHHHhCC
Confidence 999999999998632111 12345688877766655565
No 25
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=93.77 E-value=0.83 Score=36.92 Aligned_cols=92 Identities=8% Similarity=0.013 Sum_probs=49.4
Q ss_pred HHHHHHhcCCcCCCCcCEEEEEEecCCCCChhHHHHHHHHHHHCCC-EEEeeeccCCCCchHHHHHHHHHHHHHCCCccE
Q psy14347 62 LAIRQSWGYEKRFSDVPIVTVFILGYDPDNEGLQIEIAEESERYND-IVQAKFIDSYFNNTIKTMMGFKWAANYCKHSKF 140 (316)
Q Consensus 62 ~~IR~TW~~~~~~~~~~v~~vFvlG~~~~~~~~~~~l~~E~~~~~D-Il~~d~~DsY~Nlt~K~~~~l~w~~~~c~~~~f 140 (316)
+.|+++-.+........+.++.+-..+. +. ....+.++...+.- ++..... .|.. ...+++++.+.+ +.+|
T Consensus 10 ~~l~~~l~sl~~q~~~~~~iivvdd~s~-d~-t~~~~~~~~~~~~~~~~~~~~~---~~~g--~~~~~n~~~~~~-~~~~ 81 (180)
T cd06423 10 AVIERTIESLLALDYPKLEVIVVDDGST-DD-TLEILEELAALYIRRVLVVRDK---ENGG--KAGALNAGLRHA-KGDI 81 (180)
T ss_pred HHHHHHHHHHHhCCCCceEEEEEeCCCc-cc-hHHHHHHHhccccceEEEEEec---ccCC--chHHHHHHHHhc-CCCE
Confidence 4555555544332223455555544443 33 33444444443322 2222221 2211 234566666666 8999
Q ss_pred EEEeCCceEEeHHHHHHHHhc
Q psy14347 141 YFFADDDFYVSTRNVLRFLRN 161 (316)
Q Consensus 141 vlk~DDD~~Vn~~~L~~~L~~ 161 (316)
++.+|+|..+....|...+..
T Consensus 82 i~~~D~D~~~~~~~l~~~~~~ 102 (180)
T cd06423 82 VVVLDADTILEPDALKRLVVP 102 (180)
T ss_pred EEEECCCCCcChHHHHHHHHH
Confidence 999999999988777766443
No 26
>PRK11204 N-glycosyltransferase; Provisional
Probab=93.69 E-value=2.2 Score=41.42 Aligned_cols=185 Identities=10% Similarity=0.014 Sum_probs=95.8
Q ss_pred eeEEEEEEcCCCCHHHHHHHHHHhcCCcCCCCcCEEEEEEecCCCCChhHHHHHHHHHHHCCCEEEeeeccCCCCchHHH
Q psy14347 45 IRVVYIVKSALRHFERRLAIRQSWGYEKRFSDVPIVTVFILGYDPDNEGLQIEIAEESERYNDIVQAKFIDSYFNNTIKT 124 (316)
Q Consensus 45 ~~lli~V~S~~~~~~rR~~IR~TW~~~~~~~~~~v~~vFvlG~~~~~~~~~~~l~~E~~~~~DIl~~d~~DsY~Nlt~K~ 124 (316)
+.+-|+|.+.-+.. .|+++-.+.........+++ ++.... ++...+.+++..+++..+...... .|.. |.
T Consensus 54 p~vsViIp~yne~~----~i~~~l~sl~~q~yp~~eii-VvdD~s-~d~t~~~l~~~~~~~~~v~~i~~~---~n~G-ka 123 (420)
T PRK11204 54 PGVSILVPCYNEGE----NVEETISHLLALRYPNYEVI-AINDGS-SDNTGEILDRLAAQIPRLRVIHLA---ENQG-KA 123 (420)
T ss_pred CCEEEEEecCCCHH----HHHHHHHHHHhCCCCCeEEE-EEECCC-CccHHHHHHHHHHhCCcEEEEEcC---CCCC-HH
Confidence 44566666554333 34444433221111234444 444433 233445565556666666555433 3332 43
Q ss_pred HHHHHHHHHHCCCccEEEEeCCceEEeHHHHHHHHhcCCCCCcccccchhhhhccccccccCCCCCcceEEEEeecCcCc
Q psy14347 125 MMGFKWAANYCKHSKFYFFADDDFYVSTRNVLRFLRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKLFSGFVFVSSPH 204 (316)
Q Consensus 125 ~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ly~G~~~~~~p~ 204 (316)
.+++.+.+.+ +.+|++..|+|+.+..+.|.+.+..... +++.....|... .
T Consensus 124 -~aln~g~~~a-~~d~i~~lDaD~~~~~d~L~~l~~~~~~-----------------------~~~v~~v~g~~~----~ 174 (420)
T PRK11204 124 -NALNTGAAAA-RSEYLVCIDGDALLDPDAAAYMVEHFLH-----------------------NPRVGAVTGNPR----I 174 (420)
T ss_pred -HHHHHHHHHc-CCCEEEEECCCCCCChhHHHHHHHHHHh-----------------------CCCeEEEECCce----e
Confidence 4566666665 7899999999999999888776654310 122222222211 0
Q ss_pred cCCCCCcccc--ccCCCC-----------CCcccccccceEEecHHHHHHHHHHhccCCCCCCCchHHHHhhHHcCCcee
Q psy14347 205 RHYTSKWYIS--LQEYPY-----------HLWPPYVTAGSYVVSREVLLDFYFASHFTKHFRFDDIYLGILAKKTNTEPF 271 (316)
Q Consensus 205 r~~~~Kw~v~--~~~y~~-----------~~yP~y~~G~~yvlS~~~~~~l~~~s~~~~~~~~eDv~~Gi~~~k~gi~~~ 271 (316)
++. ..|.-. ..+|.. ...+..++|.+.++.+++++++-- --+..-.||+.++.-+.+.|.+..
T Consensus 175 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~vgg---~~~~~~~ED~~l~~rl~~~G~~i~ 250 (420)
T PRK11204 175 RNR-STLLGRIQVGEFSSIIGLIKRAQRVYGRVFTVSGVITAFRKSALHEVGY---WSTDMITEDIDISWKLQLRGWDIR 250 (420)
T ss_pred ccc-hhHHHHHHHHHHHHhhhHHHHHHHHhCCceEecceeeeeeHHHHHHhCC---CCCCcccchHHHHHHHHHcCCeEE
Confidence 100 000000 000000 011223478889999999987621 112234699999998888887654
Q ss_pred e
Q psy14347 272 H 272 (316)
Q Consensus 272 ~ 272 (316)
-
T Consensus 251 ~ 251 (420)
T PRK11204 251 Y 251 (420)
T ss_pred e
Confidence 3
No 27
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=93.64 E-value=1.2 Score=36.04 Aligned_cols=99 Identities=12% Similarity=0.080 Sum_probs=51.5
Q ss_pred EEEEEcCCCCHHHH-HHHHHHhcCCcCCCCcCEEEEEEecCCCCChhHHHHHHHHHHHCCCEEEeeeccCCCCchHHHHH
Q psy14347 48 VYIVKSALRHFERR-LAIRQSWGYEKRFSDVPIVTVFILGYDPDNEGLQIEIAEESERYNDIVQAKFIDSYFNNTIKTMM 126 (316)
Q Consensus 48 li~V~S~~~~~~rR-~~IR~TW~~~~~~~~~~v~~vFvlG~~~~~~~~~~~l~~E~~~~~DIl~~d~~DsY~Nlt~K~~~ 126 (316)
+|.+.-.+....+- +.+++. . ...++++++-..+. +.....+++-.+....+......+. . -.-.
T Consensus 3 vip~~n~~~~l~~~l~sl~~q--~-----~~~~eiivvdd~s~--d~~~~~~~~~~~~~~~i~~i~~~~n---~--g~~~ 68 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQ--T-----DPDFEIIVVDDGST--DETEEILEEYAESDPNIRYIRNPEN---L--GFSA 68 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHH--S-----GCEEEEEEEECS-S--SSHHHHHHHHHCCSTTEEEEEHCCC---S--HHHH
T ss_pred EEEeeCCHHHHHHHHHHHhhc--c-----CCCEEEEEeccccc--ccccccccccccccccccccccccc---c--cccc
Confidence 44444445555544 457777 1 12345655554443 3334444444443445555554443 2 2233
Q ss_pred HHHHHHHHCCCccEEEEeCCceEEeHHHHHHHHhc
Q psy14347 127 GFKWAANYCKHSKFYFFADDDFYVSTRNVLRFLRN 161 (316)
Q Consensus 127 ~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~L~~ 161 (316)
++..+.++. ..+|++.+|||.++....|..++..
T Consensus 69 ~~n~~~~~a-~~~~i~~ld~D~~~~~~~l~~l~~~ 102 (169)
T PF00535_consen 69 ARNRGIKHA-KGEYILFLDDDDIISPDWLEELVEA 102 (169)
T ss_dssp HHHHHHHH---SSEEEEEETTEEE-TTHHHHHHHH
T ss_pred ccccccccc-ceeEEEEeCCCceEcHHHHHHHHHH
Confidence 445555554 5669999999999998866665554
No 28
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=93.52 E-value=2.4 Score=37.62 Aligned_cols=187 Identities=10% Similarity=0.049 Sum_probs=90.9
Q ss_pred CeeEEEEEEcCCCCHHHHHHHHHHhcCCcCCCCcCEEEEEEecCCCCChhHHHHHHHHHHHCCCEEEeeeccCCCCchHH
Q psy14347 44 QIRVVYIVKSALRHFERRLAIRQSWGYEKRFSDVPIVTVFILGYDPDNEGLQIEIAEESERYNDIVQAKFIDSYFNNTIK 123 (316)
Q Consensus 44 ~~~lli~V~S~~~~~~rR~~IR~TW~~~~~~~~~~v~~vFvlG~~~~~~~~~~~l~~E~~~~~DIl~~d~~DsY~Nlt~K 123 (316)
...+-|+|.+.-+...-...|+.-..+.. ....++++++...+. +. ..+.+.+..+. .+...... .|. -|
T Consensus 28 ~~~isVvip~~n~~~~l~~~l~si~~q~~--~~~~~eiivvdd~s~-d~-t~~~~~~~~~~--~v~~i~~~---~~~-g~ 97 (251)
T cd06439 28 LPTVTIIIPAYNEEAVIEAKLENLLALDY--PRDRLEIIVVSDGST-DG-TAEIAREYADK--GVKLLRFP---ERR-GK 97 (251)
T ss_pred CCEEEEEEecCCcHHHHHHHHHHHHhCcC--CCCcEEEEEEECCCC-cc-HHHHHHHHhhC--cEEEEEcC---CCC-Ch
Confidence 34556666665444444555655554322 222256665554443 33 33333332222 23333222 222 23
Q ss_pred HHHHHHHHHHHCCCccEEEEeCCceEEeHHHHHHHHhcCCCCCcccccchhhhhccccccccCCCCCcceEEEEeecCcC
Q psy14347 124 TMMGFKWAANYCKHSKFYFFADDDFYVSTRNVLRFLRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKLFSGFVFVSSP 203 (316)
Q Consensus 124 ~~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ly~G~~~~~~p 203 (316)
. .+++...+.. ..+|++.+|+|+.+..+-|.+.+.... .+...+.+|......+
T Consensus 98 ~-~a~n~gi~~a-~~d~i~~lD~D~~~~~~~l~~l~~~~~------------------------~~~~~~v~~~~~~~~~ 151 (251)
T cd06439 98 A-AALNRALALA-TGEIVVFTDANALLDPDALRLLVRHFA------------------------DPSVGAVSGELVIVDG 151 (251)
T ss_pred H-HHHHHHHHHc-CCCEEEEEccccCcCHHHHHHHHHHhc------------------------CCCccEEEeEEEecCC
Confidence 2 3455555554 569999999999999776776665431 1233455554431111
Q ss_pred cc-CCCCC--cccccc--CCC-CCCcccccccceEEecHHHHHHHHHHhccCCCCCCCchHHHHhhHHcCCceee
Q psy14347 204 HR-HYTSK--WYISLQ--EYP-YHLWPPYVTAGSYVVSREVLLDFYFASHFTKHFRFDDIYLGILAKKTNTEPFH 272 (316)
Q Consensus 204 ~r-~~~~K--w~v~~~--~y~-~~~yP~y~~G~~yvlS~~~~~~l~~~s~~~~~~~~eDv~~Gi~~~k~gi~~~~ 272 (316)
.. ..... |..... .+. ....+..+.|+++.+.+++.+. .......||..++..+.+.|.+...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~------~~~~~~~eD~~l~~~~~~~G~~~~~ 220 (251)
T cd06439 152 GGSGSGEGLYWKYENWLKRAESRLGSTVGANGAIYAIRRELFRP------LPADTINDDFVLPLRIARQGYRVVY 220 (251)
T ss_pred cccchhHHHHHHHHHHHHHHHHhcCCeeeecchHHHhHHHHhcC------CCcccchhHHHHHHHHHHcCCeEEe
Confidence 00 00000 100000 000 0112334567777777776651 1112336999998888878866554
No 29
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=93.32 E-value=2.5 Score=37.00 Aligned_cols=74 Identities=9% Similarity=0.095 Sum_probs=43.7
Q ss_pred EEEEEEecCCCCChhHHHHHHHHHHHCCCEEEeeeccCCCCchHHHHHHHHHHHHHCCCccEEEEeCCceEEeHHHHHHH
Q psy14347 79 IVTVFILGYDPDNEGLQIEIAEESERYNDIVQAKFIDSYFNNTIKTMMGFKWAANYCKHSKFYFFADDDFYVSTRNVLRF 158 (316)
Q Consensus 79 v~~vFvlG~~~~~~~~~~~l~~E~~~~~DIl~~d~~DsY~Nlt~K~~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~ 158 (316)
.+++++...+. ++ ....+ .+...+..+....- + | .-|.- ++....... ..+|++.+|+|+.+..+.|.+.
T Consensus 29 ~eiivvdd~s~-d~-~~~~l-~~~~~~~~~~v~~~-~---~-~g~~~-a~n~g~~~a-~~d~v~~lD~D~~~~~~~l~~l 98 (235)
T cd06434 29 LEIIVVTDGDD-EP-YLSIL-SQTVKYGGIFVITV-P---H-PGKRR-ALAEGIRHV-TTDIVVLLDSDTVWPPNALPEM 98 (235)
T ss_pred CEEEEEeCCCC-hH-HHHHH-HhhccCCcEEEEec-C---C-CChHH-HHHHHHHHh-CCCEEEEECCCceeChhHHHHH
Confidence 45666655544 33 33333 34555666665542 2 2 22333 333333333 7899999999999999988777
Q ss_pred HhcC
Q psy14347 159 LRNP 162 (316)
Q Consensus 159 L~~~ 162 (316)
+...
T Consensus 99 ~~~~ 102 (235)
T cd06434 99 LKPF 102 (235)
T ss_pred HHhc
Confidence 7653
No 30
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=93.22 E-value=1.9 Score=37.63 Aligned_cols=45 Identities=13% Similarity=0.074 Sum_probs=33.2
Q ss_pred ccccccceEEecHHHHHHHHHHhccCCCCCCCchHHHHhhHHcCCcee
Q psy14347 224 PPYVTAGSYVVSREVLLDFYFASHFTKHFRFDDIYLGILAKKTNTEPF 271 (316)
Q Consensus 224 P~y~~G~~yvlS~~~~~~l~~~s~~~~~~~~eDv~~Gi~~~k~gi~~~ 271 (316)
..++.|++.++++++++++..- ......||..++.-+.+.|.+..
T Consensus 157 ~~~~~g~~~~~r~~~~~~ig~~---~~~~~~eD~~l~~r~~~~g~~i~ 201 (234)
T cd06421 157 AAFCCGSGAVVRREALDEIGGF---PTDSVTEDLATSLRLHAKGWRSV 201 (234)
T ss_pred CceecCceeeEeHHHHHHhCCC---CccceeccHHHHHHHHHcCceEE
Confidence 4567899999999999986321 12344799999988888887554
No 31
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=92.85 E-value=0.98 Score=38.53 Aligned_cols=75 Identities=11% Similarity=-0.002 Sum_probs=43.2
Q ss_pred EEEEEEecCCCCChhHHHHHHHHHHHCCCEEEeeeccCCCCchHHHHHHHHHHHHHCCCccEEEEeCCceEEeHHHHHHH
Q psy14347 79 IVTVFILGYDPDNEGLQIEIAEESERYNDIVQAKFIDSYFNNTIKTMMGFKWAANYCKHSKFYFFADDDFYVSTRNVLRF 158 (316)
Q Consensus 79 v~~vFvlG~~~~~~~~~~~l~~E~~~~~DIl~~d~~DsY~Nlt~K~~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~ 158 (316)
..+++|.-.+. +......+++-.+.+. +......+ |.- + -.+++.+...+ +.+|++..|+|.++.++.|...
T Consensus 30 ~eiiivdd~ss-~d~t~~~~~~~~~~~~-i~~i~~~~---n~G-~-~~a~N~g~~~a-~gd~i~~lD~Dd~~~~~~l~~~ 101 (201)
T cd04195 30 DEVVLVKDGPV-TQSLNEVLEEFKRKLP-LKVVPLEK---NRG-L-GKALNEGLKHC-TYDWVARMDTDDISLPDRFEKQ 101 (201)
T ss_pred cEEEEEECCCC-chhHHHHHHHHHhcCC-eEEEEcCc---ccc-H-HHHHHHHHHhc-CCCEEEEeCCccccCcHHHHHH
Confidence 45554433333 3444444544455555 44333322 221 1 22455556655 7899999999999998888776
Q ss_pred Hhc
Q psy14347 159 LRN 161 (316)
Q Consensus 159 L~~ 161 (316)
+..
T Consensus 102 ~~~ 104 (201)
T cd04195 102 LDF 104 (201)
T ss_pred HHH
Confidence 664
No 32
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=92.15 E-value=0.32 Score=41.91 Aligned_cols=126 Identities=16% Similarity=0.090 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHHHCCCccEEEEeCCceEEeHHHHHHHHhcCCCCCcccccchhhhhccccccccCCCCCcceEEEEeec
Q psy14347 121 TIKTMMGFKWAANYCKHSKFYFFADDDFYVSTRNVLRFLRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKLFSGFVFV 200 (316)
Q Consensus 121 t~K~~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ly~G~~~~ 200 (316)
..|+-...+.+... .+.++++..|+|+.|+.+-|...+.... ++...+..|.-.
T Consensus 16 N~Kv~nL~~~~~~~-a~~d~~~~~DsDi~v~p~~L~~lv~~l~------------------------~p~vglVt~~~~- 69 (175)
T PF13506_consen 16 NPKVNNLAQGLEAG-AKYDYLVISDSDIRVPPDYLRELVAPLA------------------------DPGVGLVTGLPR- 69 (175)
T ss_pred ChHHHHHHHHHHhh-CCCCEEEEECCCeeECHHHHHHHHHHHh------------------------CCCCcEEEeccc-
Confidence 34555555554442 3789999999999999988887766532 122333333211
Q ss_pred CcCccCCCCC---ccc---cccCCCCCCcccccccceEEecHHHHHHHHHHhccCCCCCCCchHHHHhhHHcCCceeecC
Q psy14347 201 SSPHRHYTSK---WYI---SLQEYPYHLWPPYVTAGSYVVSREVLLDFYFASHFTKHFRFDDIYLGILAKKTNTEPFHCG 274 (316)
Q Consensus 201 ~~p~r~~~~K---w~v---~~~~y~~~~yP~y~~G~~yvlS~~~~~~l~~~s~~~~~~~~eDv~~Gi~~~k~gi~~~~~~ 274 (316)
..|.+.-.+. -++ +.-... -.-.++|.|+++++.+++++++--- ......--||..+|..+.+.|.+..-.+
T Consensus 70 ~~~~~~~~~~l~~~~~~~~~~~~~a-~~~~~~~~G~~m~~rr~~L~~~GG~-~~l~~~ladD~~l~~~~~~~G~~v~~~~ 147 (175)
T PF13506_consen 70 GVPARGFWSRLEAAFFNFLPGVLQA-LGGAPFAWGGSMAFRREALEEIGGF-EALADYLADDYALGRRLRARGYRVVLSP 147 (175)
T ss_pred ccCCcCHHHHHHHHHHhHHHHHHHH-hcCCCceecceeeeEHHHHHHcccH-HHHhhhhhHHHHHHHHHHHCCCeEEEcc
Confidence 1111110000 011 100000 1135789999999999999987211 1112244799999999999998776543
No 33
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=91.55 E-value=5.9 Score=35.29 Aligned_cols=163 Identities=11% Similarity=0.073 Sum_probs=82.7
Q ss_pred CEEEEEEecCCCCChhHHHHHHHHHHHCCC-EEEeeeccCCCCchHHHHHHHHHHHHHCCCccEEEEeCCceEEeHHHHH
Q psy14347 78 PIVTVFILGYDPDNEGLQIEIAEESERYND-IVQAKFIDSYFNNTIKTMMGFKWAANYCKHSKFYFFADDDFYVSTRNVL 156 (316)
Q Consensus 78 ~v~~vFvlG~~~~~~~~~~~l~~E~~~~~D-Il~~d~~DsY~Nlt~K~~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~ 156 (316)
.+.++++-..+. |. ..+.+++-.++|++ .+..-... .|.-. -.+++...... ..+|++.+|+|..+.++.|.
T Consensus 40 ~~eiivvDdgS~-D~-t~~i~~~~~~~~~~~~v~~~~~~--~n~G~--~~a~n~g~~~a-~g~~i~~lD~D~~~~~~~l~ 112 (243)
T PLN02726 40 DFEIIVVDDGSP-DG-TQDVVKQLQKVYGEDRILLRPRP--GKLGL--GTAYIHGLKHA-SGDFVVIMDADLSHHPKYLP 112 (243)
T ss_pred CeEEEEEeCCCC-CC-HHHHHHHHHHhcCCCcEEEEecC--CCCCH--HHHHHHHHHHc-CCCEEEEEcCCCCCCHHHHH
Confidence 467777766555 33 33444444455653 22221111 22221 13445555544 67999999999999998887
Q ss_pred HHHhcCCCCCcccccchhhhhccccccccCCCCCcceEEEEeecC--c-C----ccCCCCC--ccccccCCCCCCccccc
Q psy14347 157 RFLRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKLFSGFVFVS--S-P----HRHYTSK--WYISLQEYPYHLWPPYV 227 (316)
Q Consensus 157 ~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ly~G~~~~~--~-p----~r~~~~K--w~v~~~~y~~~~yP~y~ 227 (316)
+++.... .....+.+|..... . + .|.-.++ ..+...... ... +.+
T Consensus 113 ~l~~~~~------------------------~~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~-~d~ 166 (243)
T PLN02726 113 SFIKKQR------------------------ETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLAQTLLW-PGV-SDL 166 (243)
T ss_pred HHHHHHH------------------------hcCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHHHHHhC-CCC-CcC
Confidence 7665421 11234445543210 0 0 0100000 000001111 111 235
Q ss_pred ccceEEecHHHHHHHHHHhccCCCCCCCchHHHHhhHHcCCceeecCC
Q psy14347 228 TAGSYVVSREVLLDFYFASHFTKHFRFDDIYLGILAKKTNTEPFHCGE 275 (316)
Q Consensus 228 ~G~~yvlS~~~~~~l~~~s~~~~~~~~eDv~~Gi~~~k~gi~~~~~~~ 275 (316)
.|++.++++++++.+...... ..+ ..|+-+.+.+.+.|.+....|-
T Consensus 167 ~g~~~~~rr~~~~~i~~~~~~-~~~-~~~~el~~~~~~~g~~i~~vp~ 212 (243)
T PLN02726 167 TGSFRLYKRSALEDLVSSVVS-KGY-VFQMEIIVRASRKGYRIEEVPI 212 (243)
T ss_pred CCcccceeHHHHHHHHhhccC-CCc-EEehHHHHHHHHcCCcEEEeCc
Confidence 688889999999998643221 122 2366667777778877776553
No 34
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=91.55 E-value=12 Score=34.88 Aligned_cols=193 Identities=12% Similarity=0.077 Sum_probs=98.2
Q ss_pred eEEEEEEcCCCCHHHHHHHHHHhcCCcCCCCcCEEEEEEecCCCCChhHHHHHHHHHHHCCCEEEeeeccCCCCchHHHH
Q psy14347 46 RVVYIVKSALRHFERRLAIRQSWGYEKRFSDVPIVTVFILGYDPDNEGLQIEIAEESERYNDIVQAKFIDSYFNNTIKTM 125 (316)
Q Consensus 46 ~lli~V~S~~~~~~rR~~IR~TW~~~~~~~~~~v~~vFvlG~~~~~~~~~~~l~~E~~~~~DIl~~d~~DsY~Nlt~K~~ 125 (316)
.+-++|.|--.-....+.++..=.... ....++ ++-....+ ...+.+.... +.++......++.-= ..=.-
T Consensus 4 ~i~~iiv~yn~~~~l~~~l~~l~~~~~----~~~~iv-~vDn~s~d-~~~~~~~~~~--~~~v~~i~~~~NlG~-agg~n 74 (305)
T COG1216 4 KISIIIVTYNRGEDLVECLASLAAQTY----PDDVIV-VVDNGSTD-GSLEALKARF--FPNVRLIENGENLGF-AGGFN 74 (305)
T ss_pred ceEEEEEecCCHHHHHHHHHHHhcCCC----CCcEEE-EccCCCCC-CCHHHHHhhc--CCcEEEEEcCCCccc-hhhhh
Confidence 344555555444444455554433322 112233 34333312 2222333222 677877665554210 11111
Q ss_pred HHHHHHHHHCCCccEEEEeCCceEEeHHHHHHHHhcCCCCCcccccchhhhhccccccccCCCCCcceEEEEeecC----
Q psy14347 126 MGFKWAANYCKHSKFYFFADDDFYVSTRNVLRFLRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKLFSGFVFVS---- 201 (316)
Q Consensus 126 ~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ly~G~~~~~---- 201 (316)
.+++.+...- .+|++-.++|+.+..+.|.+.++..... ......|.....
T Consensus 75 ~g~~~a~~~~--~~~~l~LN~D~~~~~~~l~~ll~~~~~~------------------------~~~~~~~~~i~~~~~~ 128 (305)
T COG1216 75 RGIKYALAKG--DDYVLLLNPDTVVEPDLLEELLKAAEED------------------------PAAGVVGPLIRNYDES 128 (305)
T ss_pred HHHHHHhcCC--CcEEEEEcCCeeeChhHHHHHHHHHHhC------------------------CCCeEeeeeEecCCCC
Confidence 4666666532 2299999999999999888888754221 111122222210
Q ss_pred -cCc-cC-----CCCCc-cccccCCCC-----CCcccccccceEEecHHHHHHHHHHhccCC-CCCCCchHHHHhhHHcC
Q psy14347 202 -SPH-RH-----YTSKW-YISLQEYPY-----HLWPPYVTAGSYVVSREVLLDFYFASHFTK-HFRFDDIYLGILAKKTN 267 (316)
Q Consensus 202 -~p~-r~-----~~~Kw-~v~~~~y~~-----~~yP~y~~G~~yvlS~~~~~~l~~~s~~~~-~~~~eDv~~Gi~~~k~g 267 (316)
.+. +. ....| ..+..+.+. ...-++++|++.++++++++++-- ..-. .+..||+-.+.=+.++|
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~--~de~~F~y~eD~D~~~R~~~~G 206 (305)
T COG1216 129 LYIDRRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKVGG--FDERFFIYYEDVDLCLRARKAG 206 (305)
T ss_pred cchheeccccccccccceecccccccccccchhhhhhhcceeeeEEcHHHHHHhCC--CCcccceeehHHHHHHHHHHcC
Confidence 000 00 01112 111111111 112225789999999999999854 2223 35799999999999999
Q ss_pred CceeecCC
Q psy14347 268 TEPFHCGE 275 (316)
Q Consensus 268 i~~~~~~~ 275 (316)
.+..-.|.
T Consensus 207 ~~i~~~p~ 214 (305)
T COG1216 207 YKIYYVPD 214 (305)
T ss_pred CeEEEeec
Confidence 76654443
No 35
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=91.48 E-value=11 Score=37.23 Aligned_cols=185 Identities=13% Similarity=0.097 Sum_probs=95.5
Q ss_pred eeEEEEEEcCCCCHHHHHHHHHHhcCCcCCCCcCEEEEEEecCCCCChhHHHHHHHHHHHCCCEEEeeeccCCCCchHHH
Q psy14347 45 IRVVYIVKSALRHFERRLAIRQSWGYEKRFSDVPIVTVFILGYDPDNEGLQIEIAEESERYNDIVQAKFIDSYFNNTIKT 124 (316)
Q Consensus 45 ~~lli~V~S~~~~~~rR~~IR~TW~~~~~~~~~~v~~vFvlG~~~~~~~~~~~l~~E~~~~~DIl~~d~~DsY~Nlt~K~ 124 (316)
+.+-|+|.+.-+...-++.|+.- .+.. +. ..+++.+-..+. | ...+.+++..+++..+...... .|.. |.
T Consensus 75 p~vsViIP~yNE~~~i~~~l~sl-l~q~-yp--~~eIivVdDgs~-D-~t~~~~~~~~~~~~~v~vv~~~---~n~G-ka 144 (444)
T PRK14583 75 PLVSILVPCFNEGLNARETIHAA-LAQT-YT--NIEVIAINDGSS-D-DTAQVLDALLAEDPRLRVIHLA---HNQG-KA 144 (444)
T ss_pred CcEEEEEEeCCCHHHHHHHHHHH-HcCC-CC--CeEEEEEECCCC-c-cHHHHHHHHHHhCCCEEEEEeC---CCCC-HH
Confidence 44556666554433333444332 2221 12 356555544443 3 3445555555667665544332 2322 43
Q ss_pred HHHHHHHHHHCCCccEEEEeCCceEEeHHHHHHHHhcCCCCCcccccchhhhhccccccccCCCCCcceEEEEeecCcCc
Q psy14347 125 MMGFKWAANYCKHSKFYFFADDDFYVSTRNVLRFLRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKLFSGFVFVSSPH 204 (316)
Q Consensus 125 ~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ly~G~~~~~~p~ 204 (316)
.+++.....+ +.+|++..|.|+.+..+.|...+..... +++.....|.... ..
T Consensus 145 -~AlN~gl~~a-~~d~iv~lDAD~~~~~d~L~~lv~~~~~-----------------------~~~~g~v~g~~~~--~~ 197 (444)
T PRK14583 145 -IALRMGAAAA-RSEYLVCIDGDALLDKNAVPYLVAPLIA-----------------------NPRTGAVTGNPRI--RT 197 (444)
T ss_pred -HHHHHHHHhC-CCCEEEEECCCCCcCHHHHHHHHHHHHh-----------------------CCCeEEEEcccee--cC
Confidence 4566666665 7899999999999999988776653210 1222222221110 00
Q ss_pred cC-CCCCccccc------------cCCCCCCcccccccceEEecHHHHHHHHHHhccCCCCCCCchHHHHhhHHcCCcee
Q psy14347 205 RH-YTSKWYISL------------QEYPYHLWPPYVTAGSYVVSREVLLDFYFASHFTKHFRFDDIYLGILAKKTNTEPF 271 (316)
Q Consensus 205 r~-~~~Kw~v~~------------~~y~~~~yP~y~~G~~yvlS~~~~~~l~~~s~~~~~~~~eDv~~Gi~~~k~gi~~~ 271 (316)
++ ..++....+ ..|. . +..++|++..+.+++++++---. +..-.||.-+|.-+...|.+..
T Consensus 198 ~~~~~~~~~~~e~~~~~~~~~~~~~~~g-~--~~~~sG~~~~~rr~al~~vGg~~---~~~i~ED~dl~~rl~~~G~~i~ 271 (444)
T PRK14583 198 RSTLIGRVQVGEFSSIIGLIKRTQRVYG-Q--VFTVSGVVAAFRRRALADVGYWS---PDMITEDIDISWKLQLKHWSVF 271 (444)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHhC-C--ceEecCceeEEEHHHHHHcCCCC---CCcccccHHHHHHHHHcCCeEE
Confidence 10 001111000 0110 1 22357888899999988763111 2234699999999888887554
Q ss_pred e
Q psy14347 272 H 272 (316)
Q Consensus 272 ~ 272 (316)
.
T Consensus 272 ~ 272 (444)
T PRK14583 272 F 272 (444)
T ss_pred E
Confidence 3
No 36
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=90.51 E-value=0.39 Score=48.38 Aligned_cols=61 Identities=16% Similarity=0.250 Sum_probs=44.2
Q ss_pred CCCCchHHHHhhHH-cCCceeec-CCcee--cCCC---C----CccccceeEEEeccCChHHHHHHHHHHHh
Q psy14347 252 FRFDDIYLGILAKK-TNTEPFHC-GEFYF--YKKD---Y----SLHNYQYVIASHGYGNHDELLRVWNEQRG 312 (316)
Q Consensus 252 ~~~eDv~~Gi~~~k-~gi~~~~~-~~f~~--~~~~---~----~~c~~~~~i~~H~~~~p~~m~~~W~~~~~ 312 (316)
-.-||+.+|.|..+ +||.+++. .++.. +... + ....+..+||+|.+++|+.|++++.++..
T Consensus 11 s~~~Dv~lGRCI~~~~gi~Ct~~~q~l~y~~~~~~~~~~~~~~~~~~~~~AiTlHPvk~p~~mYrLH~y~~~ 82 (499)
T PF05679_consen 11 SNHEDVELGRCIKKFTGISCTWSYQGLFYHNYELNKNDFIGDLKNKEFHNAITLHPVKSPAYMYRLHRYFLS 82 (499)
T ss_pred CCCchhHHHHHHHHhcCCCeeecccceEEEeeccCCCcccccccchhhhcceeeccCCCHHHHHHHHHHHHH
Confidence 35699999999864 89998864 22221 1111 1 23456789999999999999999998865
No 37
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=90.24 E-value=7.7 Score=34.38 Aligned_cols=122 Identities=9% Similarity=0.037 Sum_probs=66.0
Q ss_pred HHHHHHHHHCCCccEEEEeCCceEEeHHHHHHHHhcCCCCCcccccchhhhhccccccccCCCCCcceEEEEeecCcCcc
Q psy14347 126 MGFKWAANYCKHSKFYFFADDDFYVSTRNVLRFLRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKLFSGFVFVSSPHR 205 (316)
Q Consensus 126 ~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ly~G~~~~~~p~r 205 (316)
.+++...++. +.+|++.+|+|+.+.++.|.+.+..... .+++.....|.+.......
T Consensus 74 ~a~n~g~~~a-~gd~i~~~DaD~~~~~~~l~~~~~~~~~----------------------~~~~v~~~~~~~~~~~~~~ 130 (241)
T cd06427 74 KACNYALAFA-RGEYVVIYDAEDAPDPDQLKKAVAAFAR----------------------LDDKLACVQAPLNYYNARE 130 (241)
T ss_pred HHHHHHHHhc-CCCEEEEEcCCCCCChHHHHHHHHHHHh----------------------cCCCEEEEeCceEeeCCCc
Confidence 4566666665 6799999999999999988887765310 0011111112211000000
Q ss_pred CCCCCccccc--c----CCC---CCCcccccccceEEecHHHHHHHHHHhccCCCCCCCchHHHHhhHHcCCceeec
Q psy14347 206 HYTSKWYISL--Q----EYP---YHLWPPYVTAGSYVVSREVLLDFYFASHFTKHFRFDDIYLGILAKKTNTEPFHC 273 (316)
Q Consensus 206 ~~~~Kw~v~~--~----~y~---~~~yP~y~~G~~yvlS~~~~~~l~~~s~~~~~~~~eDv~~Gi~~~k~gi~~~~~ 273 (316)
....+.+... . ..+ ....+..++|++.++++++++.+-.- -+....||..+++-+.+.|.+....
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~vgg~---~~~~~~eD~~l~~rl~~~G~r~~~~ 204 (241)
T cd06427 131 NWLTRMFALEYAAWFDYLLPGLARLGLPIPLGGTSNHFRTDVLRELGGW---DPFNVTEDADLGLRLARAGYRTGVL 204 (241)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCeeecCCchHHhhHHHHHHcCCC---CcccchhhHHHHHHHHHCCceEEEe
Confidence 0000100000 0 000 11233456788899999999886321 1223469999998887777666543
No 38
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=90.16 E-value=11 Score=31.99 Aligned_cols=163 Identities=9% Similarity=-0.014 Sum_probs=77.4
Q ss_pred EEEEEEecCCCCChhHHHHHHHHHHHCCCEEEeeeccCCCCchHHHHHHHHHHHHHCCCccEEEEeCCceEEeHHHHHHH
Q psy14347 79 IVTVFILGYDPDNEGLQIEIAEESERYNDIVQAKFIDSYFNNTIKTMMGFKWAANYCKHSKFYFFADDDFYVSTRNVLRF 158 (316)
Q Consensus 79 v~~vFvlG~~~~~~~~~~~l~~E~~~~~DIl~~d~~DsY~Nlt~K~~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~ 158 (316)
+.++.+-+.+. +......+......+.-+... ..+.-.+. -.+++++.+.. ..+|++..|+|..+..+.|...
T Consensus 32 ~eiivvd~gs~-d~~~~~~~~~~~~~~~~~~~~-~~~~~~g~----~~a~n~g~~~a-~~d~i~~ld~D~~~~~~~l~~~ 104 (202)
T cd04184 32 WELCIADDAST-DPEVKRVLKKYAAQDPRIKVV-FREENGGI----SAATNSALELA-TGEFVALLDHDDELAPHALYEV 104 (202)
T ss_pred eEEEEEeCCCC-ChHHHHHHHHHHhcCCCEEEE-EcccCCCH----HHHHHHHHHhh-cCCEEEEECCCCcCChHHHHHH
Confidence 55655545444 444433344333333323322 22221121 23455555554 6799999999999998877777
Q ss_pred HhcCCCCCcccccchhhhhccccccccCCCCCcceEEEEeecCcCccCCCCCccccccCCCCC-CcccccccceEEecHH
Q psy14347 159 LRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKLFSGFVFVSSPHRHYTSKWYISLQEYPYH-LWPPYVTAGSYVVSRE 237 (316)
Q Consensus 159 L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ly~G~~~~~~p~r~~~~Kw~v~~~~y~~~-~yP~y~~G~~yvlS~~ 237 (316)
+..... .+...+..+....-.........++.+ .|... .+..-+.|++-+++++
T Consensus 105 ~~~~~~-----------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~r~ 159 (202)
T cd04184 105 VKALNE-----------------------HPDADLIYSDEDKIDEGGKRSEPFFKP--DWSPDLLLSQNYIGHLLVYRRS 159 (202)
T ss_pred HHHHHh-----------------------CCCCCEEEccHHhccCCCCEeccccCC--CCCHHHhhhcCCccceEeEEHH
Confidence 764311 112222222111000000000001100 01111 0111123555678888
Q ss_pred HHHHHHHHhccCCCCCCCchHHHHhhHHcCCceeecCC
Q psy14347 238 VLLDFYFASHFTKHFRFDDIYLGILAKKTNTEPFHCGE 275 (316)
Q Consensus 238 ~~~~l~~~s~~~~~~~~eDv~~Gi~~~k~gi~~~~~~~ 275 (316)
+++++-- ........||.-++.-+.+.|.+..+.++
T Consensus 160 ~~~~igg--f~~~~~~~eD~~l~~rl~~~g~~~~~~~~ 195 (202)
T cd04184 160 LVRQVGG--FREGFEGAQDYDLVLRVSEHTDRIAHIPR 195 (202)
T ss_pred HHHHhCC--CCcCcccchhHHHHHHHHhccceEEEccH
Confidence 8877631 11223356899888877777877766553
No 39
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=89.91 E-value=5.2 Score=32.33 Aligned_cols=93 Identities=11% Similarity=0.023 Sum_probs=45.9
Q ss_pred EEEEcCCCCHHHHHHHHHHhcCCcCCCCcCEEEEEEecCCCCChhHHHHHHHHHHHCCCE-EEeeeccCCCCchHHHHHH
Q psy14347 49 YIVKSALRHFERRLAIRQSWGYEKRFSDVPIVTVFILGYDPDNEGLQIEIAEESERYNDI-VQAKFIDSYFNNTIKTMMG 127 (316)
Q Consensus 49 i~V~S~~~~~~rR~~IR~TW~~~~~~~~~~v~~vFvlG~~~~~~~~~~~l~~E~~~~~DI-l~~d~~DsY~Nlt~K~~~~ 127 (316)
+.|.|-+...+||..+++..... + +.+-|+-|-.. .......+......+... ......-+----.+..+.+
T Consensus 2 i~vInL~~~~~Rr~~~~~~~~~~----~--~~~~~~~Avd~-~~~~~~~~~~~~~~~~~~~~~~~l~~gEiGC~lSH~~~ 74 (128)
T cd06532 2 IFVINLDRSTDRRERMEAQLAAL----G--LDFEFFDAVDG-KDLSEEELAALYDALFLPRYGRPLTPGEIGCFLSHYKL 74 (128)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc----C--CCeEEEecccc-ccCCHHHHHHHhHHHhhhhcCCCCChhhHHHHHHHHHH
Confidence 45677788899999999865543 2 33455655543 111111222211100000 0000011111113455566
Q ss_pred HHHHHHHCCCccEEEEeCCceEE
Q psy14347 128 FKWAANYCKHSKFYFFADDDFYV 150 (316)
Q Consensus 128 l~w~~~~c~~~~fvlk~DDD~~V 150 (316)
++-+.+. +.++.+-..||+.+
T Consensus 75 w~~~~~~--~~~~alIlEDDv~~ 95 (128)
T cd06532 75 WQKIVES--NLEYALILEDDAIL 95 (128)
T ss_pred HHHHHHc--CCCeEEEEccCcEE
Confidence 6666653 56788888888654
No 40
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=88.58 E-value=13 Score=30.84 Aligned_cols=101 Identities=11% Similarity=-0.041 Sum_probs=57.3
Q ss_pred HHHHHHHHCCCccEEEEeCCceEEeHHHHHHHHhcCCCCCcccccchhhhhccccccccCCCCCcceEEEEeecCcCccC
Q psy14347 127 GFKWAANYCKHSKFYFFADDDFYVSTRNVLRFLRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKLFSGFVFVSSPHRH 206 (316)
Q Consensus 127 ~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ly~G~~~~~~p~r~ 206 (316)
+++...+.+ ..+|++..|+|..+..+-|...++... +...++.+.+....+..
T Consensus 70 ~~n~g~~~a-~g~~i~~lD~D~~~~~~~l~~~~~~~~-------------------------~~~~v~g~~~~~~~~~~- 122 (182)
T cd06420 70 IRNKAIAAA-KGDYLIFIDGDCIPHPDFIADHIELAE-------------------------PGVFLSGSRVLLNEKLT- 122 (182)
T ss_pred HHHHHHHHh-cCCEEEEEcCCcccCHHHHHHHHHHhC-------------------------CCcEEecceeecccccc-
Confidence 345555554 689999999999998877776665421 22222222221111000
Q ss_pred CCCCccccccCCCCCCcccccccceEEecHHHHHHHHHHhccCCCCCCCchHHHHhhHHcCCcee
Q psy14347 207 YTSKWYISLQEYPYHLWPPYVTAGSYVVSREVLLDFYFASHFTKHFRFDDIYLGILAKKTNTEPF 271 (316)
Q Consensus 207 ~~~Kw~v~~~~y~~~~yP~y~~G~~yvlS~~~~~~l~~~s~~~~~~~~eDv~~Gi~~~k~gi~~~ 271 (316)
.....|+++.+.++.+.++..-.........||+.++.-+.+.|+...
T Consensus 123 -----------------~~~~~~~~~~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g~~~~ 170 (182)
T cd06420 123 -----------------ERGIRGCNMSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSGIKFR 170 (182)
T ss_pred -----------------eeEeccceEEEEHHHHHHhCCCCcccccCCcchHHHHHHHHHcCCcEE
Confidence 023457778888877764321111111223799999888888886553
No 41
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=86.42 E-value=1.9 Score=36.81 Aligned_cols=49 Identities=14% Similarity=0.147 Sum_probs=36.4
Q ss_pred cccccccceEEecHHHHHHHHHHhccCCCCCCCchHHHHhhHHcCCceeec
Q psy14347 223 WPPYVTAGSYVVSREVLLDFYFASHFTKHFRFDDIYLGILAKKTNTEPFHC 273 (316)
Q Consensus 223 yP~y~~G~~yvlS~~~~~~l~~~s~~~~~~~~eDv~~Gi~~~k~gi~~~~~ 273 (316)
.+.++.|++.++++++++++.--. -+....||..+|.-+.+.|.+....
T Consensus 68 ~~~~~~G~~~~~r~~~l~~vg~~~--~~~~~~ED~~l~~~l~~~G~~~~~~ 116 (193)
T PF13632_consen 68 RPLFLSGSGMLFRREALREVGGFD--DPFSIGEDMDLGFRLRRAGYRIVYV 116 (193)
T ss_pred CCccccCcceeeeHHHHHHhCccc--ccccccchHHHHHHHHHCCCEEEEe
Confidence 466789999999999999873111 1345569999999888888666443
No 42
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=85.09 E-value=25 Score=30.57 Aligned_cols=51 Identities=10% Similarity=0.038 Sum_probs=34.2
Q ss_pred cccccceEEecHHHHHHHHHHhccCCCCCCCchHHHHhhHHcCCceeecCCc
Q psy14347 225 PYVTAGSYVVSREVLLDFYFASHFTKHFRFDDIYLGILAKKTNTEPFHCGEF 276 (316)
Q Consensus 225 ~y~~G~~yvlS~~~~~~l~~~s~~~~~~~~eDv~~Gi~~~k~gi~~~~~~~f 276 (316)
.++.|++.++++++++.+-.-.... .+..||+.+++-+.+.|.+....+.-
T Consensus 149 ~~~~~~~~~~rr~~~~~~ggfd~~~-~~~~eD~d~~~r~~~~G~~~~~~~~~ 199 (237)
T cd02526 149 DFLITSGSLISLEALEKVGGFDEDL-FIDYVDTEWCLRARSKGYKIYVVPDA 199 (237)
T ss_pred eeeeccceEEcHHHHHHhCCCCHHH-cCccchHHHHHHHHHcCCcEEEEcCe
Confidence 3556778899999988863111111 23468999998888889877665543
No 43
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=84.90 E-value=24 Score=34.70 Aligned_cols=35 Identities=11% Similarity=0.113 Sum_probs=28.3
Q ss_pred HHHHHHHHHCCCccEEEEeCCceEEeHHHHHHHHhc
Q psy14347 126 MGFKWAANYCKHSKFYFFADDDFYVSTRNVLRFLRN 161 (316)
Q Consensus 126 ~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~L~~ 161 (316)
.+++++.+++ +.+|++.+|+|..+..+.|.+.+..
T Consensus 121 ~AlN~gl~~s-~g~~v~~~DaD~~~~~d~L~~l~~~ 155 (439)
T TIGR03111 121 KALNAAIYNS-IGKYIIHIDSDGKLHKDAIKNMVTR 155 (439)
T ss_pred HHHHHHHHHc-cCCEEEEECCCCCcChHHHHHHHHH
Confidence 3667777765 6899999999999999888776654
No 44
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=84.57 E-value=7 Score=32.70 Aligned_cols=76 Identities=9% Similarity=0.030 Sum_probs=44.2
Q ss_pred CEEEEEEecCCCCChhHHHHHHHHHHHCCCEEEeeeccCCCCchHHHHHHHHHHHHHCCCccEEEEeCCceEEeHHHHHH
Q psy14347 78 PIVTVFILGYDPDNEGLQIEIAEESERYNDIVQAKFIDSYFNNTIKTMMGFKWAANYCKHSKFYFFADDDFYVSTRNVLR 157 (316)
Q Consensus 78 ~v~~vFvlG~~~~~~~~~~~l~~E~~~~~DIl~~d~~DsY~Nlt~K~~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~ 157 (316)
.+.++.+-+.+. +. ....++...+++..+....... |.- | -.+++...+.+ ..+|++.+|+|.......|..
T Consensus 29 ~~eiivvdd~s~-d~-t~~~~~~~~~~~~~i~~i~~~~---n~G-~-~~a~n~g~~~a-~~d~i~~~D~D~~~~~~~l~~ 100 (181)
T cd04187 29 DYEIIFVDDGST-DR-TLEILRELAARDPRVKVIRLSR---NFG-Q-QAALLAGLDHA-RGDAVITMDADLQDPPELIPE 100 (181)
T ss_pred CeEEEEEeCCCC-cc-HHHHHHHHHhhCCCEEEEEecC---CCC-c-HHHHHHHHHhc-CCCEEEEEeCCCCCCHHHHHH
Confidence 356666555544 33 2334444445565555554433 321 2 23445555555 569999999999998776666
Q ss_pred HHhc
Q psy14347 158 FLRN 161 (316)
Q Consensus 158 ~L~~ 161 (316)
.+..
T Consensus 101 l~~~ 104 (181)
T cd04187 101 MLAK 104 (181)
T ss_pred HHHH
Confidence 6553
No 45
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=82.57 E-value=6.7 Score=32.65 Aligned_cols=75 Identities=8% Similarity=0.071 Sum_probs=45.5
Q ss_pred EEEEEEecCCCCChhHHHHHHHHHHHCCCEEEeeeccCCCCchHHHHHHHHHHHHHCCCccEEEEeCCceEEeHHHHHHH
Q psy14347 79 IVTVFILGYDPDNEGLQIEIAEESERYNDIVQAKFIDSYFNNTIKTMMGFKWAANYCKHSKFYFFADDDFYVSTRNVLRF 158 (316)
Q Consensus 79 v~~vFvlG~~~~~~~~~~~l~~E~~~~~DIl~~d~~DsY~Nlt~K~~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~ 158 (316)
..++.+-..+. + .....++....++..+.......... .-.++....+.. ..+|++..|+|..+.++.|.++
T Consensus 29 ~eiivvd~~s~-d-~~~~~~~~~~~~~~~~~~~~~~~n~G-----~~~a~n~g~~~a-~gd~i~~lD~D~~~~~~~l~~l 100 (185)
T cd04179 29 YEIIVVDDGST-D-GTAEIARELAARVPRVRVIRLSRNFG-----KGAAVRAGFKAA-RGDIVVTMDADLQHPPEDIPKL 100 (185)
T ss_pred EEEEEEcCCCC-C-ChHHHHHHHHHhCCCeEEEEccCCCC-----ccHHHHHHHHHh-cCCEEEEEeCCCCCCHHHHHHH
Confidence 45554544443 3 33455555556666665554444332 123445555544 4599999999999998888877
Q ss_pred Hhc
Q psy14347 159 LRN 161 (316)
Q Consensus 159 L~~ 161 (316)
+..
T Consensus 101 ~~~ 103 (185)
T cd04179 101 LEK 103 (185)
T ss_pred HHH
Confidence 764
No 46
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=82.31 E-value=7.9 Score=32.65 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=24.7
Q ss_pred HHHHHHHHCCCccEEEEeCCceEEeHHHHHHHHhc
Q psy14347 127 GFKWAANYCKHSKFYFFADDDFYVSTRNVLRFLRN 161 (316)
Q Consensus 127 ~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~L~~ 161 (316)
+++++...-.+.++++.+|.|+.+.++.|...+..
T Consensus 71 g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~ 105 (183)
T cd06438 71 GFRHLLNLADDPDAVVVFDADNLVDPNALEELNAR 105 (183)
T ss_pred HHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHH
Confidence 44444321236899999999999998877766654
No 47
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=81.49 E-value=31 Score=36.39 Aligned_cols=46 Identities=11% Similarity=0.005 Sum_probs=33.3
Q ss_pred cccccceEEecHHHHHHHHHHhccCCCCCCCchHHHHhhHHcCCceeec
Q psy14347 225 PYVTAGSYVVSREVLLDFYFASHFTKHFRFDDIYLGILAKKTNTEPFHC 273 (316)
Q Consensus 225 ~y~~G~~yvlS~~~~~~l~~~s~~~~~~~~eDv~~Gi~~~k~gi~~~~~ 273 (316)
++|.|++.++.+++++++--- .. ..-.||..+|+.+.+.|.+....
T Consensus 305 ~~~~Gs~~~iRR~al~~iGGf--~~-~~vtED~~l~~rL~~~G~~~~y~ 350 (713)
T TIGR03030 305 AFFCGSAAVLRREALDEIGGI--AG-ETVTEDAETALKLHRRGWNSAYL 350 (713)
T ss_pred eeecCceeEEEHHHHHHcCCC--CC-CCcCcHHHHHHHHHHcCCeEEEe
Confidence 456799999999999876311 11 22379999999999888775443
No 48
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=80.80 E-value=35 Score=29.22 Aligned_cols=33 Identities=9% Similarity=0.107 Sum_probs=24.2
Q ss_pred HHHHHHHCCCccEEEEeCCceEEeHHHHHHHHhc
Q psy14347 128 FKWAANYCKHSKFYFFADDDFYVSTRNVLRFLRN 161 (316)
Q Consensus 128 l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~L~~ 161 (316)
++...+.. ..+|++.+|+|..+.++.|...+..
T Consensus 70 ~n~g~~~a-~gd~i~~lD~D~~~~~~~l~~l~~~ 102 (224)
T cd06442 70 YIEGFKAA-RGDVIVVMDADLSHPPEYIPELLEA 102 (224)
T ss_pred HHHHHHHc-CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 33333433 4589999999999998888777764
No 49
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=80.49 E-value=47 Score=32.00 Aligned_cols=193 Identities=7% Similarity=-0.042 Sum_probs=104.8
Q ss_pred eeEEEEEEcCCCCH-HHHHHHHHHhcCCcCCCCcCEEEEEEecCCCCChhHHHHHHHHHHHCCCEEEeeeccCCCCchHH
Q psy14347 45 IRVVYIVKSALRHF-ERRLAIRQSWGYEKRFSDVPIVTVFILGYDPDNEGLQIEIAEESERYNDIVQAKFIDSYFNNTIK 123 (316)
Q Consensus 45 ~~lli~V~S~~~~~-~rR~~IR~TW~~~~~~~~~~v~~vFvlG~~~~~~~~~~~l~~E~~~~~DIl~~d~~DsY~Nlt~K 123 (316)
+.+-|+|.+--++. -..+.++..=... -....++.+...+. ++..+.+++-.+++++.+..... ..-...
T Consensus 54 p~vsviiP~ynE~~~~~~~~l~s~~~~d----yp~~evivv~d~~~--d~~~~~~~~~~~~~~~~~~~~~~---~~~~~g 124 (439)
T COG1215 54 PKVSVIIPAYNEEPEVLEETLESLLSQD----YPRYEVIVVDDGST--DETYEILEELGAEYGPNFRVIYP---EKKNGG 124 (439)
T ss_pred CceEEEEecCCCchhhHHHHHHHHHhCC----CCCceEEEECCCCC--hhHHHHHHHHHhhcCcceEEEec---cccCcc
Confidence 45666776665544 3334444443322 11245555554333 34445566666666544444422 111222
Q ss_pred HHHHHHHHHHHCCCccEEEEeCCceEEeHHHHHHHHhcCCCCCcccccchhhhhccccccccCCCCCcceEEEEee-cCc
Q psy14347 124 TMMGFKWAANYCKHSKFYFFADDDFYVSTRNVLRFLRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKLFSGFVF-VSS 202 (316)
Q Consensus 124 ~~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ly~G~~~-~~~ 202 (316)
-..++.++.... ..++++..|-|+.+..+.|.+.+..... +.....+|... .+.
T Consensus 125 K~~al~~~l~~~-~~d~V~~~DaD~~~~~d~l~~~~~~f~~------------------------~~~~~v~~~~~~~~~ 179 (439)
T COG1215 125 KAGALNNGLKRA-KGDVVVILDADTVPEPDALRELVSPFED------------------------PPVGAVVGTPRIRNR 179 (439)
T ss_pred chHHHHHHHhhc-CCCEEEEEcCCCCCChhHHHHHHhhhcC------------------------CCeeEEeCCceeeec
Confidence 245677777765 5899999999999999999887775421 11111111110 000
Q ss_pred Cc-cCCCCCccc------c--ccCCC-CCCcccccccceEEecHHHHHHHHHHhccCCCCCCCchHHHHhhHHcCCceee
Q psy14347 203 PH-RHYTSKWYI------S--LQEYP-YHLWPPYVTAGSYVVSREVLLDFYFASHFTKHFRFDDIYLGILAKKTNTEPFH 272 (316)
Q Consensus 203 p~-r~~~~Kw~v------~--~~~y~-~~~yP~y~~G~~yvlS~~~~~~l~~~s~~~~~~~~eDv~~Gi~~~k~gi~~~~ 272 (316)
+. ....++-.. . ..... ....+..|.|++.++.+++++++- ...+..--||.-+++.++..|.+...
T Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G~~~~~rr~aL~~~g---~~~~~~i~ED~~lt~~l~~~G~~~~~ 256 (439)
T COG1215 180 PDPSNLLGRIQAIEYLSAFYFRLRAASKGGLISFLSGSSSAFRRSALEEVG---GWLEDTITEDADLTLRLHLRGYRVVY 256 (439)
T ss_pred CChhhhcchhcchhhhhhHHHhhhhhhhcCCeEEEcceeeeEEHHHHHHhC---CCCCCceeccHHHHHHHHHCCCeEEE
Confidence 00 000000000 0 00001 122577899999999999999875 22233345999999999988877654
Q ss_pred cC
Q psy14347 273 CG 274 (316)
Q Consensus 273 ~~ 274 (316)
.+
T Consensus 257 ~~ 258 (439)
T COG1215 257 VP 258 (439)
T ss_pred ee
Confidence 43
No 50
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=80.27 E-value=32 Score=31.20 Aligned_cols=33 Identities=9% Similarity=-0.039 Sum_probs=25.8
Q ss_pred HHHHHHHHCCCccEEEEeCCceEEeHHHHHHHHhc
Q psy14347 127 GFKWAANYCKHSKFYFFADDDFYVSTRNVLRFLRN 161 (316)
Q Consensus 127 ~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~L~~ 161 (316)
+++++.+. +.+|++..|||+.+..+.|...+..
T Consensus 65 Gi~~a~~~--~~d~i~~lD~D~~~~~~~l~~l~~~ 97 (281)
T TIGR01556 65 GLDASFRR--GVQGVLLLDQDSRPGNAFLAAQWKL 97 (281)
T ss_pred HHHHHHHC--CCCEEEEECCCCCCCHHHHHHHHHH
Confidence 66777652 6899999999999998777666653
No 51
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=74.13 E-value=38 Score=26.06 Aligned_cols=33 Identities=12% Similarity=0.150 Sum_probs=24.7
Q ss_pred HHHHHHHHCCCccEEEEeCCceEEeHHHHHHHHh
Q psy14347 127 GFKWAANYCKHSKFYFFADDDFYVSTRNVLRFLR 160 (316)
Q Consensus 127 ~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~L~ 160 (316)
++..+.+.+ +.++++.+|+|..+..+.+...+.
T Consensus 68 ~~~~~~~~~-~~d~v~~~d~D~~~~~~~~~~~~~ 100 (156)
T cd00761 68 ARNAGLKAA-RGEYILFLDADDLLLPDWLERLVA 100 (156)
T ss_pred HHHHHHHHh-cCCEEEEECCCCccCccHHHHHHH
Confidence 445555554 789999999999998887776533
No 52
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=70.75 E-value=61 Score=29.47 Aligned_cols=110 Identities=11% Similarity=0.075 Sum_probs=60.1
Q ss_pred EEEEcCCCCHH-HHHHHHHHhcCC--cCCCCcCEEEEEEecCCCCChhHHHHHHHH----HHHCCCEEEeeeccCCCCch
Q psy14347 49 YIVKSALRHFE-RRLAIRQSWGYE--KRFSDVPIVTVFILGYDPDNEGLQIEIAEE----SERYNDIVQAKFIDSYFNNT 121 (316)
Q Consensus 49 i~V~S~~~~~~-rR~~IR~TW~~~--~~~~~~~v~~vFvlG~~~~~~~~~~~l~~E----~~~~~DIl~~d~~DsY~Nlt 121 (316)
|+|.+.-...+ -...++.++... ..+. ..+++ |++..+. +++.......+ .+++..-+.+-+..--.|.-
T Consensus 3 IliP~~ne~~~~l~~~l~~~~~~~~~~~~~-~~~eI-~vldD~~-d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~~g 79 (254)
T cd04191 3 IVMPVYNEDPARVFAGLRAMYESLAKTGLA-DHFDF-FILSDTR-DPDIWLAEEAAWLDLCEELGAQGRIYYRRRRENTG 79 (254)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHhcCCc-CceEE-EEECCCC-ChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCCCC
Confidence 55666555554 566677666421 1110 13455 8887665 54432211111 12244333333444444555
Q ss_pred HHHHHHHHHHHHHCCCccEEEEeCCceEEeHHHHHHHHhc
Q psy14347 122 IKTMMGFKWAANYCKHSKFYFFADDDFYVSTRNVLRFLRN 161 (316)
Q Consensus 122 ~K~~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~L~~ 161 (316)
.|+-..-......-.+.+|++-.|.|+.+.++.|.+.+..
T Consensus 80 ~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~ 119 (254)
T cd04191 80 RKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRR 119 (254)
T ss_pred ccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 5665544444332236799999999999999988887764
No 53
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=70.29 E-value=60 Score=27.72 Aligned_cols=76 Identities=8% Similarity=0.068 Sum_probs=45.6
Q ss_pred CEEEEEEecCCCCChhHHHHHHHHHHHCCCEEE-eeeccCCCCchHHHHHHHHHHHHHCCCccEEEEeCCceEEeHHHHH
Q psy14347 78 PIVTVFILGYDPDNEGLQIEIAEESERYNDIVQ-AKFIDSYFNNTIKTMMGFKWAANYCKHSKFYFFADDDFYVSTRNVL 156 (316)
Q Consensus 78 ~v~~vFvlG~~~~~~~~~~~l~~E~~~~~DIl~-~d~~DsY~Nlt~K~~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~ 156 (316)
.+.++.+-+.+. +. ....+++..++++..++ .... .|.- |. .+++...+.+ ..+|++.+|+|....++.+.
T Consensus 30 ~~eiivvdd~S~-D~-t~~~~~~~~~~~~~~i~~i~~~---~n~G-~~-~a~~~g~~~a-~gd~i~~ld~D~~~~~~~l~ 101 (211)
T cd04188 30 SYEIIVVDDGSK-DG-TAEVARKLARKNPALIRVLTLP---KNRG-KG-GAVRAGMLAA-RGDYILFADADLATPFEELE 101 (211)
T ss_pred CEEEEEEeCCCC-Cc-hHHHHHHHHHhCCCcEEEEEcc---cCCC-cH-HHHHHHHHHh-cCCEEEEEeCCCCCCHHHHH
Confidence 356666655554 33 34455555566666422 2222 2221 11 3444455555 56999999999999998888
Q ss_pred HHHhc
Q psy14347 157 RFLRN 161 (316)
Q Consensus 157 ~~L~~ 161 (316)
+++..
T Consensus 102 ~l~~~ 106 (211)
T cd04188 102 KLEEA 106 (211)
T ss_pred HHHHH
Confidence 87764
No 54
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=69.99 E-value=89 Score=28.59 Aligned_cols=164 Identities=14% Similarity=0.134 Sum_probs=86.6
Q ss_pred cCEEEEEEecCCCCChhHHHHHHHHHHHCCCE-EE-eeeccCCCCchHHHHHHHHHHHHHCCCccEEEEeCCceEEeHHH
Q psy14347 77 VPIVTVFILGYDPDNEGLQIEIAEESERYNDI-VQ-AKFIDSYFNNTIKTMMGFKWAANYCKHSKFYFFADDDFYVSTRN 154 (316)
Q Consensus 77 ~~v~~vFvlG~~~~~~~~~~~l~~E~~~~~DI-l~-~d~~DsY~Nlt~K~~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~ 154 (316)
..+.++++=+.+. ....+.|.+-.+.++-+ ++ .+.....-+.+ .+.+-+.+.+ ..++++..|.|+++..+.
T Consensus 33 ~~~eiIvvd~~s~--~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a----~arN~g~~~A-~~d~l~flD~D~i~~~~~ 105 (281)
T PF10111_consen 33 PDFEIIVVDDGSS--DEFDEELKKLCEKNGFIRYIRHEDNGEPFSRA----KARNIGAKYA-RGDYLIFLDADCIPSPDF 105 (281)
T ss_pred CCEEEEEEECCCc--hhHHHHHHHHHhccCceEEEEcCCCCCCcCHH----HHHHHHHHHc-CCCEEEEEcCCeeeCHHH
Confidence 3466666655443 34446677777777766 32 22222222322 3455566666 889999999999999998
Q ss_pred HHHHHh---cCCCCCcccccchhhhhccccccccCCCCCcceEEEEee-cCcCc--cC-CCCCccccc----cCC--CCC
Q psy14347 155 VLRFLR---NPLQYPQYLELPIETIQSKSNIMDYELPSDVKLFSGFVF-VSSPH--RH-YTSKWYISL----QEY--PYH 221 (316)
Q Consensus 155 L~~~L~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ly~G~~~-~~~p~--r~-~~~Kw~v~~----~~y--~~~ 221 (316)
+.+.+. .... ....+.++.+. -..+. .. ...+..... ... ...
T Consensus 106 i~~~~~~~~~l~~------------------------~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (281)
T PF10111_consen 106 IEKLLNHVKKLDK------------------------NPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFISGKNS 161 (281)
T ss_pred HHHHHHHHHHHhc------------------------CCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHhhcccc
Confidence 888777 2210 11122222211 11000 00 000000000 000 011
Q ss_pred Ccc-cccccceEEecHHHHHHHHHHhccCCCCCCCchHHHHhhHHcCCcee
Q psy14347 222 LWP-PYVTAGSYVVSREVLLDFYFASHFTKHFRFDDIYLGILAKKTNTEPF 271 (316)
Q Consensus 222 ~yP-~y~~G~~yvlS~~~~~~l~~~s~~~~~~~~eDv~~Gi~~~k~gi~~~ 271 (316)
.+. ....|++.+++++.-.++----........||.-+|.=+.++|....
T Consensus 162 ~~~~~~~~s~~~~i~r~~f~~iGGfDE~f~G~G~ED~D~~~RL~~~~~~~~ 212 (281)
T PF10111_consen 162 LWEFIAFASSCFLINREDFLEIGGFDERFRGWGYEDIDFGYRLKKAGYKFK 212 (281)
T ss_pred ccccccccceEEEEEHHHHHHhCCCCccccCCCcchHHHHHHHHHcCCcEe
Confidence 111 22346899999998887643333333356899999988888886553
No 55
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=69.17 E-value=30 Score=29.60 Aligned_cols=41 Identities=12% Similarity=0.146 Sum_probs=27.9
Q ss_pred ccceEEecHHHHHHHHHHhccCCCCCCCchHHHHhhHHcCCcee
Q psy14347 228 TAGSYVVSREVLLDFYFASHFTKHFRFDDIYLGILAKKTNTEPF 271 (316)
Q Consensus 228 ~G~~yvlS~~~~~~l~~~s~~~~~~~~eDv~~Gi~~~k~gi~~~ 271 (316)
++.+.++++++.+.+-. .-+.+..||.-++.-+.+.|....
T Consensus 137 ~~~~~~~r~~~~~~~G~---fd~~~~~ED~d~~~r~~~~G~~~~ 177 (221)
T cd02522 137 GDQGLFIRRELFEELGG---FPELPLMEDVELVRRLRRRGRPAL 177 (221)
T ss_pred CCceEEEEHHHHHHhCC---CCccccccHHHHHHHHHhCCCEEE
Confidence 35678899998876631 112237899999887887886543
No 56
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=68.90 E-value=1.4e+02 Score=30.32 Aligned_cols=48 Identities=13% Similarity=0.025 Sum_probs=36.3
Q ss_pred ccccceEEecHHHHHHHHHHhcc---CCCCCCCchHHHHhhHHcCCceeec
Q psy14347 226 YVTAGSYVVSREVLLDFYFASHF---TKHFRFDDIYLGILAKKTNTEPFHC 273 (316)
Q Consensus 226 y~~G~~yvlS~~~~~~l~~~s~~---~~~~~~eDv~~Gi~~~k~gi~~~~~ 273 (316)
.|.|.++.+++++++++...... -+..--||.-+|+-+...|.+..-.
T Consensus 231 ~~~Gtg~afRR~aLe~l~~~~GG~~fd~~sLTED~dLglRL~~~G~rv~y~ 281 (504)
T PRK14716 231 PSAGVGTAFSRRALERLAAERGGQPFDSDSLTEDYDIGLRLKRAGFRQIFV 281 (504)
T ss_pred ccCCeeEEeEHHHHHHHHhhcCCCCCCCCCcchHHHHHHHHHHCCCEEEEe
Confidence 46799999999999998654321 1223469999999999999887643
No 57
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=67.32 E-value=1.1e+02 Score=28.74 Aligned_cols=76 Identities=11% Similarity=0.098 Sum_probs=45.3
Q ss_pred CEEEEEEecCCCCChhHHHHHHHHHHHCCC-EEEeeeccCCCCchHHHHHHHHHHHHHCCCccEEEEeCCceEEeHHHHH
Q psy14347 78 PIVTVFILGYDPDNEGLQIEIAEESERYND-IVQAKFIDSYFNNTIKTMMGFKWAANYCKHSKFYFFADDDFYVSTRNVL 156 (316)
Q Consensus 78 ~v~~vFvlG~~~~~~~~~~~l~~E~~~~~D-Il~~d~~DsY~Nlt~K~~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~ 156 (316)
.+.++++-..+. |.+ .+.+++-.+.+++ ++......++. |. .+++-..+++ +.+|++.+|.|.-.+++.+.
T Consensus 38 ~~EIIvVDDgS~-D~T-~~il~~~~~~~~~~v~~i~~~~n~G----~~-~A~~~G~~~A-~gd~vv~~DaD~q~~p~~i~ 109 (325)
T PRK10714 38 EYEILLIDDGSS-DNS-AEMLVEAAQAPDSHIVAILLNRNYG----QH-SAIMAGFSHV-TGDLIITLDADLQNPPEEIP 109 (325)
T ss_pred CEEEEEEeCCCC-CcH-HHHHHHHHhhcCCcEEEEEeCCCCC----HH-HHHHHHHHhC-CCCEEEEECCCCCCCHHHHH
Confidence 467888877665 433 3334433444454 33333333221 11 2333344444 68999999999999999888
Q ss_pred HHHhc
Q psy14347 157 RFLRN 161 (316)
Q Consensus 157 ~~L~~ 161 (316)
++++.
T Consensus 110 ~l~~~ 114 (325)
T PRK10714 110 RLVAK 114 (325)
T ss_pred HHHHH
Confidence 88775
No 58
>KOG3588|consensus
Probab=64.28 E-value=3.5 Score=39.75 Aligned_cols=78 Identities=22% Similarity=0.250 Sum_probs=48.9
Q ss_pred ecHHHHHHHHHHhccCCCCCCCchHHHHhhHHcCCceeecCCceecCCCC--CccccceeEEEeccCChHHHHHHHHHHH
Q psy14347 234 VSREVLLDFYFASHFTKHFRFDDIYLGILAKKTNTEPFHCGEFYFYKKDY--SLHNYQYVIASHGYGNHDELLRVWNEQR 311 (316)
Q Consensus 234 lS~~~~~~l~~~s~~~~~~~~eDv~~Gi~~~k~gi~~~~~~~f~~~~~~~--~~c~~~~~i~~H~~~~p~~m~~~W~~~~ 311 (316)
||++++..|...-+.. .-..|||-+|.|..+.=-+..+. .....++.| +....++.|+.|.+++|.-|+++.-...
T Consensus 1 Msr~~l~hl~~cL~~m-~t~hedve~grc~r~~mq~Lf~~-n~~ank~sy~~~~~~~~~aitlhp~K~p~~~~r~h~~~l 78 (494)
T KOG3588|consen 1 MSRDTLLHLESCLQHM-LTSHEDVELGRCIRKHMQKLFHN-NQSANKESYAKNMKELKDAITLHPIKDPAVMRRVHLRNL 78 (494)
T ss_pred CcHHHHHHHHHHHHHH-HhhccCcchhHHHHHHHHHHhhh-hhhhcChhhhccchhhhhhhccccccCHHHHHHHHHHHH
Confidence 6888888776554321 23589999999987651111111 111111222 2334578999999999999999887665
Q ss_pred hc
Q psy14347 312 GI 313 (316)
Q Consensus 312 ~~ 313 (316)
++
T Consensus 79 ~~ 80 (494)
T KOG3588|consen 79 EI 80 (494)
T ss_pred HH
Confidence 54
No 59
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=63.34 E-value=2e+02 Score=30.56 Aligned_cols=190 Identities=9% Similarity=0.025 Sum_probs=100.6
Q ss_pred CeeEEEEEEcCCCCHHHHHHHHHHhcCCcCCCCcCEEEEEEecCCCCChhHHHHHHHHHHHCCCEEEeeeccCCCCchHH
Q psy14347 44 QIRVVYIVKSALRHFERRLAIRQSWGYEKRFSDVPIVTVFILGYDPDNEGLQIEIAEESERYNDIVQAKFIDSYFNNTIK 123 (316)
Q Consensus 44 ~~~lli~V~S~~~~~~rR~~IR~TW~~~~~~~~~~v~~vFvlG~~~~~~~~~~~l~~E~~~~~DIl~~d~~DsY~Nlt~K 123 (316)
...+-|+|.-.-+...-.+.|...=. ...+++ ..++|+.. .. |+.....+++-.++|.++..+-... ...+-|
T Consensus 62 ~~~vsIlVPa~nE~~vi~~~i~~ll~-~ldYP~--~eI~vi~~-~n-D~~T~~~~~~l~~~~p~~~~v~~~~--~g~~gK 134 (727)
T PRK11234 62 EKPLAIMVPAWNETGVIGNMAELAAT-TLDYEN--YHIFVGTY-PN-DPATQADVDAVCARFPNVHKVVCAR--PGPTSK 134 (727)
T ss_pred CCCEEEEEecCcchhhHHHHHHHHHH-hCCCCC--eEEEEEec-CC-ChhHHHHHHHHHHHCCCcEEEEeCC--CCCCCH
Confidence 34566666654444434444444311 222333 55555544 33 5555566666677888864333333 123456
Q ss_pred HHHHHHHHHHHC------C--CccEEEEeCCceEEeHHHHHHHHhcCCCCCcccccchhhhhccccccccCCCCCcceEE
Q psy14347 124 TMMGFKWAANYC------K--HSKFYFFADDDFYVSTRNVLRFLRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKLFS 195 (316)
Q Consensus 124 ~~~~l~w~~~~c------~--~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ly~ 195 (316)
.- +++|+...+ + .++.++-.|-|+.|.++.|. .+.... ++. .+.-
T Consensus 135 a~-aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l~------------------------~~~-~~VQ 187 (727)
T PRK11234 135 AD-CLNNVLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYLV------------------------ERK-DLIQ 187 (727)
T ss_pred HH-HHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhhc------------------------CCC-CeEe
Confidence 54 566666654 1 24557779999999999886 332211 011 1111
Q ss_pred EEeecCcCccCCCCCc----cccccCCC----C-----C--CcccccccceEEecHHHHHHHHHHhcc---CCCCCCCch
Q psy14347 196 GFVFVSSPHRHYTSKW----YISLQEYP----Y-----H--LWPPYVTAGSYVVSREVLLDFYFASHF---TKHFRFDDI 257 (316)
Q Consensus 196 G~~~~~~p~r~~~~Kw----~v~~~~y~----~-----~--~yP~y~~G~~yvlS~~~~~~l~~~s~~---~~~~~~eDv 257 (316)
+.+. |.....+.| |+. +|. . . .-+-.++|.+..+|+.+++.+.+.... .+..--||.
T Consensus 188 ~p~~---p~~~~~~~~~~~~~~~--EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l~al~~~ggg~~~~~~~lTED~ 262 (727)
T PRK11234 188 IPVY---PFEREWTHFTSGTYID--EFAELHGKDVPVREALAGQVPSAGVGTCFSRRAVTALLEDGDGIAFDVQSLTEDY 262 (727)
T ss_pred eccc---CCCccHHHHHHHHHHH--HHHHHhhhhhHHHHHcCCCcccCCceEEEecccHHHHHHhcCCCCcCCCcchHHH
Confidence 1111 110001111 111 111 0 0 123457899999999887777666522 233446999
Q ss_pred HHHHhhHHcCCceee
Q psy14347 258 YLGILAKKTNTEPFH 272 (316)
Q Consensus 258 ~~Gi~~~k~gi~~~~ 272 (316)
-+|+-+...|.+..-
T Consensus 263 dlg~rL~~~G~~v~f 277 (727)
T PRK11234 263 DIGFRLKEKGMREIF 277 (727)
T ss_pred HHHHHHHHCCCEEEE
Confidence 999999999987754
No 60
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=62.51 E-value=71 Score=30.57 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=22.4
Q ss_pred HHHHHHHHCCCccEEEEeCCceEEeHH
Q psy14347 127 GFKWAANYCKHSKFYFFADDDFYVSTR 153 (316)
Q Consensus 127 ~l~w~~~~c~~~~fvlk~DDD~~Vn~~ 153 (316)
++.|+-+.. +.++++..|||..+.++
T Consensus 88 aln~vF~~~-~~~~vIILEDDl~~sPd 113 (334)
T cd02514 88 ALTQTFNLF-GYSFVIILEDDLDIAPD 113 (334)
T ss_pred HHHHHHHhc-CCCEEEEECCCCccCHh
Confidence 777777665 78999999999999997
No 61
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=61.43 E-value=1.5e+02 Score=32.23 Aligned_cols=45 Identities=9% Similarity=0.031 Sum_probs=33.7
Q ss_pred cccccceEEecHHHHHHHHHHhccCCCCCCCchHHHHhhHHcCCceee
Q psy14347 225 PYVTAGSYVVSREVLLDFYFASHFTKHFRFDDIYLGILAKKTNTEPFH 272 (316)
Q Consensus 225 ~y~~G~~yvlS~~~~~~l~~~s~~~~~~~~eDv~~Gi~~~k~gi~~~~ 272 (316)
.+|.|++.++.+++++++---. .. .--||..+++.+.+.|-+...
T Consensus 416 ~~~~Gs~aviRReaLeeVGGfd--~~-titED~dlslRL~~~Gyrv~y 460 (852)
T PRK11498 416 TFFCGSCAVIRRKPLDEIGGIA--VE-TVTEDAHTSLRLHRRGYTSAY 460 (852)
T ss_pred cccccceeeeEHHHHHHhcCCC--CC-ccCccHHHHHHHHHcCCEEEE
Confidence 4577999999999999873211 12 236999999999998876654
No 62
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=57.18 E-value=7.7 Score=34.72 Aligned_cols=25 Identities=12% Similarity=0.392 Sum_probs=21.6
Q ss_pred CccEEEEeCCceEEeHHHHHHHHhc
Q psy14347 137 HSKFYFFADDDFYVSTRNVLRFLRN 161 (316)
Q Consensus 137 ~~~fvlk~DDD~~Vn~~~L~~~L~~ 161 (316)
+.+|++.+|.|+.+..+.|...+..
T Consensus 73 ~~e~i~~~DaD~~~~~~~l~~l~~~ 97 (244)
T cd04190 73 DPEFILLVDADTKFDPDSIVQLYKA 97 (244)
T ss_pred CCCEEEEECCCCcCCHhHHHHHHHH
Confidence 6899999999999999887776654
No 63
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=55.28 E-value=83 Score=29.30 Aligned_cols=98 Identities=17% Similarity=0.173 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHhcCCcCCCCcCEEEEEEecCCCCChhHHHHHHHHHHHCCCEEEeeecc--CCCCchHHHHHHHHHHHHH
Q psy14347 57 HFERRLAIRQSWGYEKRFSDVPIVTVFILGYDPDNEGLQIEIAEESERYNDIVQAKFID--SYFNNTIKTMMGFKWAANY 134 (316)
Q Consensus 57 ~~~rR~~IR~TW~~~~~~~~~~v~~vFvlG~~~~~~~~~~~l~~E~~~~~DIl~~d~~D--sY~Nlt~K~~~~l~w~~~~ 134 (316)
-.+.|+.-|-.=.+.-. +...+.++|+=|.. .....|..=.....-.+.+++.+ .+..-+.-...+..|..+.
T Consensus 18 ~~~~R~f~~~~~~k~ft-s~~~~~vi~~~~~~----~~d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~ 92 (346)
T COG4092 18 LTDSRQFSRTSAVKVFT-SSDITMVICLRAHE----VMDRLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEK 92 (346)
T ss_pred hhHHHHHhhHhhhhhcc-ccccEEEEEEecch----hHHHHHHHHhccccceEEEecCCCccccchhhhhhccchhhhcc
Confidence 45566666554333211 22334555554432 33455666555566666666643 4444456666788899988
Q ss_pred CCCccEEEEeCCceEEeHHHHHHHHh
Q psy14347 135 CKHSKFYFFADDDFYVSTRNVLRFLR 160 (316)
Q Consensus 135 c~~~~fvlk~DDD~~Vn~~~L~~~L~ 160 (316)
| +..+++..|-|+|...++..+.|.
T Consensus 93 ~-~Sn~vlFlDvDc~~S~dnF~k~l~ 117 (346)
T COG4092 93 C-ESNLVLFLDVDCFGSSDNFAKMLS 117 (346)
T ss_pred c-cccEEEEEeccccccHHHHHHHHH
Confidence 9 899999999999999999998884
No 64
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=54.59 E-value=95 Score=28.79 Aligned_cols=98 Identities=9% Similarity=0.121 Sum_probs=58.2
Q ss_pred HHHHhcCCcC--CCCcCEEEEEEecCCCCChhHHHHHHHHH----------HHCCCEEE--eeeccCC------------
Q psy14347 64 IRQSWGYEKR--FSDVPIVTVFILGYDPDNEGLQIEIAEES----------ERYNDIVQ--AKFIDSY------------ 117 (316)
Q Consensus 64 IR~TW~~~~~--~~~~~v~~vFvlG~~~~~~~~~~~l~~E~----------~~~~DIl~--~d~~DsY------------ 117 (316)
+-+-|..... ++...+.+-|+++.+.......+.|+.+. ..|+-|.+ -||.+.-
T Consensus 40 l~~y~~~L~~L~YP~~lIsLgfLv~d~~e~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~df~~~~~~~~~~RH~~~~ 119 (269)
T PF03452_consen 40 LPDYFDNLLSLTYPHELISLGFLVSDSSEFDNTLKILEAALKKLQSHGPESKRFRSITILRKDFGQQLSQDRSERHAFEV 119 (269)
T ss_pred HHHHHHHHHhCCCCchheEEEEEcCCCchhHHHHHHHHHHHHHHhccCcccCCcceEEEEcCCCcccccCchhhccchhh
Confidence 4445544332 34456899999999763334444555443 33555554 4665421
Q ss_pred CCchHHHHHHH-HHHHHH--CCCccEEEEeCCceEEeHHHHHHHHhc
Q psy14347 118 FNNTIKTMMGF-KWAANY--CKHSKFYFFADDDFYVSTRNVLRFLRN 161 (316)
Q Consensus 118 ~Nlt~K~~~~l-~w~~~~--c~~~~fvlk~DDD~~Vn~~~L~~~L~~ 161 (316)
...-++.++-. +|+..+ -|..+||+-.|-|+.-.++.|++-|.+
T Consensus 120 Q~~RR~~mAraRN~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~ 166 (269)
T PF03452_consen 120 QRPRRRAMARARNFLLSSALGPWHSWVLWLDADIVETPPTLIQDLIA 166 (269)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCcccEEEEEecCcccCChHHHHHHHh
Confidence 11123333322 343332 257899999999999999999998865
No 65
>PHA01631 hypothetical protein
Probab=50.86 E-value=60 Score=27.85 Aligned_cols=26 Identities=12% Similarity=0.358 Sum_probs=21.8
Q ss_pred CCcccccccceEEecHHHHHHHHHHh
Q psy14347 221 HLWPPYVTAGSYVVSREVLLDFYFAS 246 (316)
Q Consensus 221 ~~yP~y~~G~~yvlS~~~~~~l~~~s 246 (316)
+..-+||.|.-+.+.++.+..|....
T Consensus 109 ~~v~~FC~sTNf~~pr~~l~~l~~vi 134 (176)
T PHA01631 109 NEIRPFCSGTNYIFRKSLLPYLEYTI 134 (176)
T ss_pred CcEEEEEccccEEeeHHHhHHHHHHH
Confidence 44568999999999999999887654
No 66
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=48.30 E-value=1.1e+02 Score=22.67 Aligned_cols=49 Identities=10% Similarity=0.145 Sum_probs=31.7
Q ss_pred CCCEEEeeeccCCCCchHHHHHHHHHHHHHCCCccEEEEeCCceEEeHHH
Q psy14347 105 YNDIVQAKFIDSYFNNTIKTMMGFKWAANYCKHSKFYFFADDDFYVSTRN 154 (316)
Q Consensus 105 ~~DIl~~d~~DsY~Nlt~K~~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~ 154 (316)
+.++-.......+..-... ...++.+.+....++|++.+|-|=|+.++.
T Consensus 40 ~~~v~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 40 LPGVGIIRWVDPYRDERRQ-RAWRNALIERAFDADWVLFLDADEFLVPPP 88 (97)
T ss_pred CCCcEEEEeCCCccchHHH-HHHHHHHHHhCCCCCEEEEEeeeEEEecCC
Confidence 4556666666666554444 334444444434789999999998887654
No 67
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=48.18 E-value=2e+02 Score=30.49 Aligned_cols=116 Identities=11% Similarity=0.035 Sum_probs=67.6
Q ss_pred CeeEEEEEEcCCCCHH-HHHHHHHHhcCCcCCC-CcCEEEEEEecCCCCChhHHH----HHHHHHHHCCCEEEeeeccCC
Q psy14347 44 QIRVVYIVKSALRHFE-RRLAIRQSWGYEKRFS-DVPIVTVFILGYDPDNEGLQI----EIAEESERYNDIVQAKFIDSY 117 (316)
Q Consensus 44 ~~~lli~V~S~~~~~~-rR~~IR~TW~~~~~~~-~~~v~~vFvlG~~~~~~~~~~----~l~~E~~~~~DIl~~d~~DsY 117 (316)
..++-|+|.+.-+..+ -+..|+.++.+....+ ...+.+ |++..+. ++.... .+.+-.+++++-..+-+..--
T Consensus 123 ~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~-~vLdD~~-d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R~ 200 (691)
T PRK05454 123 EARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDF-FILSDTR-DPDIAAAEEAAWLELRAELGGEGRIFYRRRR 200 (691)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEE-EEEECCC-ChhHHHHHHHHHHHHHHhcCCCCcEEEEECC
Confidence 4566777777655543 3456777776433211 123444 8888766 443221 122223444321112223333
Q ss_pred CCchHHHHHHHHHHHHHCCCccEEEEeCCceEEeHHHHHHHHhc
Q psy14347 118 FNNTIKTMMGFKWAANYCKHSKFYFFADDDFYVSTRNVLRFLRN 161 (316)
Q Consensus 118 ~Nlt~K~~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~L~~ 161 (316)
.|.-.|.-..-.|......+.+|++-.|-|+.+..+.|.+.+..
T Consensus 201 ~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~ 244 (691)
T PRK05454 201 RNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRL 244 (691)
T ss_pred cCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHH
Confidence 45556777666666654447899999999999999988887764
No 68
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=41.29 E-value=49 Score=31.60 Aligned_cols=38 Identities=26% Similarity=0.356 Sum_probs=25.7
Q ss_pred ccceEEecHHHH-HHHHHHhc--cCCCCCCCchHHHHhhHH
Q psy14347 228 TAGSYVVSREVL-LDFYFASH--FTKHFRFDDIYLGILAKK 265 (316)
Q Consensus 228 ~G~~yvlS~~~~-~~l~~~s~--~~~~~~~eDv~~Gi~~~k 265 (316)
+|.--.+-|+++ ..+|..-. .-+.-..||+|-|.|+++
T Consensus 206 ~~~NlAF~ReligPA~y~g~m~~g~~i~R~dDiWsG~c~K~ 246 (346)
T PLN03180 206 CGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCAKV 246 (346)
T ss_pred ccchhhhhhhhcchhheecccCCCCcccchhhhHHHHHHHH
Confidence 355566778888 66665311 225567999999999874
No 69
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=38.11 E-value=2.6e+02 Score=24.05 Aligned_cols=32 Identities=9% Similarity=0.097 Sum_probs=25.6
Q ss_pred HHHHHHHHCCCccEEEEeCCceEEeHHHHHHHH
Q psy14347 127 GFKWAANYCKHSKFYFFADDDFYVSTRNVLRFL 159 (316)
Q Consensus 127 ~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~L 159 (316)
+++...+.. +.+|++.+|.|+.+..+.|.+.+
T Consensus 78 a~n~g~~~a-~~~~i~~~DaD~~~~~~~l~~~~ 109 (232)
T cd06437 78 ALAEGMKVA-KGEYVAIFDADFVPPPDFLQKTP 109 (232)
T ss_pred HHHHHHHhC-CCCEEEEEcCCCCCChHHHHHhh
Confidence 456666665 78999999999999998887743
No 70
>PLN03181 glycosyltransferase; Provisional
Probab=33.67 E-value=3.3e+02 Score=27.04 Aligned_cols=87 Identities=14% Similarity=0.093 Sum_probs=49.5
Q ss_pred HHHHHhcCCcC--CCCcCEEEEEEecCCC-------CChhHHHHH---HHHHHHCC-CEEEeeec-c-CCCCchHHHHHH
Q psy14347 63 AIRQSWGYEKR--FSDVPIVTVFILGYDP-------DNEGLQIEI---AEESERYN-DIVQAKFI-D-SYFNNTIKTMMG 127 (316)
Q Consensus 63 ~IR~TW~~~~~--~~~~~v~~vFvlG~~~-------~~~~~~~~l---~~E~~~~~-DIl~~d~~-D-sY~Nlt~K~~~~ 127 (316)
.-|+.|.+... ..+.+-++|-|.|..+ .+.-+...+ .+-+++|| ++...+.. + .+..-..|..++
T Consensus 110 ~kR~~Wl~~~p~~~~~~~prVViVT~Sdp~~C~~~~gD~~LlriikNR~dYArrHGY~lf~~~a~Ld~~~p~~WaKipal 189 (453)
T PLN03181 110 EKRAEWLKLHPSFAPGAEERVVMVTGSQPTPCKNPIGDHLLLRFFKNKVDYCRIHGYDIFYNNALLHPKMNSYWAKLPVV 189 (453)
T ss_pred HHHHHHHHhCCCCCCCCCCCEEEEECCCCCCCCCcccHHHHHHHHHHHHHHHHHhCCcEEEeccccCccCchhhhHHHHH
Confidence 33678876542 1233456777777652 122222222 24567777 55543322 2 344455666544
Q ss_pred HHHHHHHCCCccEEEEeCCceEE
Q psy14347 128 FKWAANYCKHSKFYFFADDDFYV 150 (316)
Q Consensus 128 l~w~~~~c~~~~fvlk~DDD~~V 150 (316)
+-+-...|+++|+.-+|.|+++
T Consensus 190 -RaAM~a~PeAEWfWWLDsDALI 211 (453)
T PLN03181 190 -RAAMLAHPEAEWIWWVDSDAVF 211 (453)
T ss_pred -HHHHHHCCCceEEEEecCCcee
Confidence 4444446999999999999887
No 71
>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C33 (clan CA). The type example is equine arteritis virus Nsp2-type cysteine proteinase, which is involved in viral polyprotein processing [].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=29.46 E-value=42 Score=26.54 Aligned_cols=29 Identities=10% Similarity=0.392 Sum_probs=20.5
Q ss_pred HHHHHHHHHH--H---HHCCCccEEEEeCCceEE
Q psy14347 122 IKTMMGFKWA--A---NYCKHSKFYFFADDDFYV 150 (316)
Q Consensus 122 ~K~~~~l~w~--~---~~c~~~~fvlk~DDD~~V 150 (316)
.+++..++.- . ..||+++|++|.|++-+.
T Consensus 48 ~~~iq~l~lPat~~~~~~Cp~ArYv~~l~~qHW~ 81 (108)
T PF05412_consen 48 YQVIQSLRLPATLDRNGACPHARYVLKLDGQHWE 81 (108)
T ss_pred HHHHHHccCceeccCCCCCCCCEEEEEecCceEE
Confidence 4455555542 2 569999999999999553
No 72
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=28.39 E-value=1.1e+02 Score=25.77 Aligned_cols=23 Identities=9% Similarity=-0.051 Sum_probs=19.4
Q ss_pred ccEEEEeCCceEEeHHHHHHHHh
Q psy14347 138 SKFYFFADDDFYVSTRNVLRFLR 160 (316)
Q Consensus 138 ~~fvlk~DDD~~Vn~~~L~~~L~ 160 (316)
.+|++.+|.|+.+.+..|.....
T Consensus 90 ~d~v~~~DaD~~~~~~~l~~~~~ 112 (191)
T cd06436 90 RVIIAVIDADGRLDPNALEAVAP 112 (191)
T ss_pred ccEEEEECCCCCcCHhHHHHHHH
Confidence 47999999999999988887443
No 73
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=24.98 E-value=1.6e+02 Score=29.34 Aligned_cols=90 Identities=16% Similarity=0.289 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHC---CCccEEEEeCCceEEeHHHHHHHHhcCCCCCcccccchhhhhccccccccCCCCCcceEEEEee
Q psy14347 123 KTMMGFKWAANYC---KHSKFYFFADDDFYVSTRNVLRFLRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKLFSGFVF 199 (316)
Q Consensus 123 K~~~~l~w~~~~c---~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ly~G~~~ 199 (316)
|.-.=++|+..+. -+++.++.+.||.-+-++ +++|...... . +..++.+||-.-+
T Consensus 174 ~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPD-Ff~Yf~~~~~---l------------------l~~D~sl~ciSaw 231 (434)
T PF03071_consen 174 KIARHYKWALSQVFNKFKYSSVIILEDDLEISPD-FFEYFSATLP---L------------------LENDPSLWCISAW 231 (434)
T ss_dssp HHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TT-HHHHHHHHHH---H------------------HHH-TTEEEEES-
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEecCcccCcc-HHHHHHHHHH---H------------------HhcCCCeEEEEcc
Confidence 4455566766532 257899999999999887 4455544210 0 1245678886555
Q ss_pred cCcCccCCCCCccc----cccCCCCCCcccccccceEEecHHHHHHHH
Q psy14347 200 VSSPHRHYTSKWYI----SLQEYPYHLWPPYVTAGSYVVSREVLLDFY 243 (316)
Q Consensus 200 ~~~p~r~~~~Kw~v----~~~~y~~~~yP~y~~G~~yvlS~~~~~~l~ 243 (316)
+. ++.+.++ |...|-.+.| .|-|++|++++-..|.
T Consensus 232 Nd-----nG~~~~~~~~~~~~lyRsdff----pglGWml~r~~w~el~ 270 (434)
T PF03071_consen 232 ND-----NGKEHFVDDSRPSLLYRSDFF----PGLGWMLTRELWDELE 270 (434)
T ss_dssp -T-----T-BGGGS-TT-TT-EEEESS-------SSEEEEHHHHHHHG
T ss_pred cc-----CCccccccCCCccceEecccC----CchHHHhhHHHHHhhc
Confidence 21 1111211 2334444444 4999999999988654
No 74
>PF03490 Varsurf_PPLC: Variant-surface-glycoprotein phospholipase C; InterPro: IPR003633 Variant-surface-glycoprotein phospholipase C, by hydrolysis of the attached glycolipid, releases soluble variant surface glycoprotein containing phosphoinositol from the cell wall after lysis. It catalyses the conversion of variant-surface-glycoprotein 1,2 didecanoyl-SN-phosphatidylinositol and water to 1,2-didecanoylglycerol and the soluble variant-surface-glycoprotein. It also cleaves similar membrane anchors on some mammalian proteins.; GO: 0047396 glycosylphosphatidylinositol diacylglycerol-lyase activity, 0006650 glycerophospholipid metabolic process
Probab=23.48 E-value=39 Score=22.91 Aligned_cols=24 Identities=33% Similarity=0.607 Sum_probs=18.8
Q ss_pred HHhcCCcC--CCCcCEEEEEEecCCC
Q psy14347 66 QSWGYEKR--FSDVPIVTVFILGYDP 89 (316)
Q Consensus 66 ~TW~~~~~--~~~~~v~~vFvlG~~~ 89 (316)
++|++..+ +.+..+.-+|++|...
T Consensus 9 qSWM~DLrS~I~~~~I~ql~ipGsHn 34 (51)
T PF03490_consen 9 QSWMSDLRSSIGEMAITQLFIPGSHN 34 (51)
T ss_pred HHHHHHHHHHHhcceeeeEEeccccc
Confidence 67888764 4677889999999865
No 75
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=23.39 E-value=7.4e+02 Score=24.58 Aligned_cols=92 Identities=11% Similarity=0.127 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHHHhcCCcC-CCC---cCEEEEEEecCCCC-------ChhHHHHHH---HHHHHCCCEEEeee---ccCC
Q psy14347 55 LRHFERRLAIRQSWGYEKR-FSD---VPIVTVFILGYDPD-------NEGLQIEIA---EESERYNDIVQAKF---IDSY 117 (316)
Q Consensus 55 ~~~~~rR~~IR~TW~~~~~-~~~---~~v~~vFvlG~~~~-------~~~~~~~l~---~E~~~~~DIl~~d~---~DsY 117 (316)
..+.+.+ |+.|.+... +.. ..-+++-|.|..+. +.-++..++ .-++.||=-+..+. .+..
T Consensus 102 i~~wd~~---R~~wl~~~p~~~~~~~g~prVviVT~sdp~~c~n~~gd~yLlks~kNK~dYAr~HGY~~fyn~~~ld~~~ 178 (429)
T PLN03182 102 ISDWDEQ---RRRWLRKNPGFPSFVNGKPRVLLVTGSQPKPCENPVGDHYLLKSLKNKIDYCRLHGIEIFYNMAHLDAEM 178 (429)
T ss_pred CCCHHHH---HHHHHHhCCCCCCccCCCCCEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHHHHhCCEEEeehhhcCcCC
Confidence 3444433 777776543 111 23477878877541 222233232 44577774444444 2233
Q ss_pred CCchHHHHHHHHHHHHHCCCccEEEEeCCceEE
Q psy14347 118 FNNTIKTMMGFKWAANYCKHSKFYFFADDDFYV 150 (316)
Q Consensus 118 ~Nlt~K~~~~l~w~~~~c~~~~fvlk~DDD~~V 150 (316)
.....|.-++.+-+.+ .|+++|+.=+|.|+++
T Consensus 179 p~~WaKlpaLR~aM~~-~PeaEWiWWLDsDALI 210 (429)
T PLN03182 179 AGFWAKLPLLRKLMLA-HPEVEWIWWMDSDALF 210 (429)
T ss_pred CcchhHHHHHHHHHHH-CCCceEEEEecCCcee
Confidence 4456687776666665 5899999999999887
Done!