Query psy14347
Match_columns 316
No_of_seqs 171 out of 1170
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 17:34:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14347.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14347hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j0a_A Beta-1,3-N-acetylglucos 100.0 4.2E-28 1.4E-32 223.6 16.6 207 45-295 13-236 (280)
2 1xhb_A Polypeptide N-acetylgal 96.1 0.32 1.1E-05 46.5 18.0 197 44-273 28-250 (472)
3 1qg8_A Protein (spore coat pol 94.6 1.1 3.8E-05 38.3 14.8 160 78-267 30-201 (255)
4 4fix_A UDP-galactofuranosyl tr 93.9 0.42 1.4E-05 48.4 11.8 49 224-274 362-410 (657)
5 2d7i_A Polypeptide N-acetylgal 93.8 1.7 5.7E-05 42.9 15.9 76 79-161 145-220 (570)
6 2ffu_A Ppgalnact-2, polypeptid 93.1 2.3 7.9E-05 40.9 15.4 72 79-161 99-170 (501)
7 3bcv_A Putative glycosyltransf 91.2 1.9 6.4E-05 36.4 10.8 75 78-161 34-108 (240)
8 4hg6_A Cellulose synthase subu 86.7 13 0.00045 38.1 15.2 124 121-272 224-359 (802)
9 2z86_A Chondroitin synthase; G 85.3 9.5 0.00032 37.5 12.9 75 78-161 404-478 (625)
10 2z86_A Chondroitin synthase; G 83.4 19 0.00066 35.2 14.2 45 226-272 275-321 (625)
11 2c0n_A A197; thermophil protei 80.4 9.6 0.00033 32.5 9.0 131 97-264 16-159 (203)
12 3ckj_A Putative uncharacterize 41.8 22 0.00075 31.9 4.1 34 127-161 122-156 (329)
13 2l82_A Designed protein OR32; 36.5 60 0.002 24.8 5.1 54 51-111 55-108 (162)
14 2lnd_A De novo designed protei 30.1 72 0.0024 23.0 4.3 68 52-130 32-101 (112)
No 1
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=99.95 E-value=4.2e-28 Score=223.57 Aligned_cols=207 Identities=17% Similarity=0.160 Sum_probs=139.6
Q ss_pred eeEEEEEEcCCCC-HHHHHHHHHHhcCCcCCCCcCEEEEEEecCCCCChhHHHHHHHHHHHCCCEEEeeecc--CCCCch
Q psy14347 45 IRVVYIVKSALRH-FERRLAIRQSWGYEKRFSDVPIVTVFILGYDPDNEGLQIEIAEESERYNDIVQAKFID--SYFNNT 121 (316)
Q Consensus 45 ~~lli~V~S~~~~-~~rR~~IR~TW~~~~~~~~~~v~~vFvlG~~~~~~~~~~~l~~E~~~~~DIl~~d~~D--sY~Nlt 121 (316)
-+|+|+|+|++.+ .+||.+||+||++... . .+|+++... ++.. ... ..+++++.++.+ ++.+++
T Consensus 13 ~~I~~~V~T~~~~~~~R~~~I~~TW~~~~~--~----~~fifsd~~-d~~l----~~~--~~~~~~~~~~~~~~~~~~l~ 79 (280)
T 2j0a_A 13 GDIFIAVKTTWAFHRSRLDLLLDTWVSRIR--Q----QTFIFTDSP-DERL----QER--LGPHLVVTQCSAEHSHPALS 79 (280)
T ss_dssp GGEEEEEECCGGGTTTTHHHHHHTGGGGSG--G----GEEEEESSC-CHHH----HHH--HGGGEEECCC-------CCC
T ss_pred ccEEEEEECcHHHHHHHHHHHHHHHhccCC--C----ceEEEcCCC-cccc----ccc--ccccceeccccccccccchH
Confidence 4689999999985 4577999999998754 1 134444433 3433 222 246788877644 678899
Q ss_pred HHHHHHHHHHHHHCCCccEEEEeCCceEEeHHHHHHHHhcCCCCCcccccchhhhhccccccccCCCCCcceEEEEeecC
Q psy14347 122 IKTMMGFKWAANYCKHSKFYFFADDDFYVSTRNVLRFLRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKLFSGFVFVS 201 (316)
Q Consensus 122 ~K~~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ly~G~~~~~ 201 (316)
.|+...+++... ++++|++|+||||||++++|+++|... +++.++|+|.....
T Consensus 80 ~K~~~~~~~~l~--~~~~Wf~~~DDDtyv~~~nL~~~L~~~-------------------------d~~~~~YiG~~~~~ 132 (280)
T 2j0a_A 80 CKMAAEFDAFLV--SGLRWFCHVDDDNYVNPKALLQLLKTF-------------------------PQDRDVYVGKPSLN 132 (280)
T ss_dssp HHHHHHHHHHHH--HTCSEEEEEETTEEECHHHHHHHHTTS-------------------------CTTSCCEEECEEC-
T ss_pred HHHHHHHHHHhC--CCCcEEEEeCCCcEEcHHHHHHHHHhC-------------------------CCCCCEEEEEeccC
Confidence 999999987643 589999999999999999999999874 36678999999877
Q ss_pred cCccCCCCCccccccCCCCCCccccc-ccceEEecHHHHHHHHHHhccC-------CCCCCCchHHHHhhH-HcCCceee
Q psy14347 202 SPHRHYTSKWYISLQEYPYHLWPPYV-TAGSYVVSREVLLDFYFASHFT-------KHFRFDDIYLGILAK-KTNTEPFH 272 (316)
Q Consensus 202 ~p~r~~~~Kw~v~~~~y~~~~yP~y~-~G~~yvlS~~~~~~l~~~s~~~-------~~~~~eDv~~Gi~~~-k~gi~~~~ 272 (316)
.|+|. ++++|...++...|+ || +|+||+||++++++|+...... .....||+++|+|++ ++||++++
T Consensus 133 ~~~~~---~~~~~~~~~~~~~~~-y~~GGaG~vlSr~~l~~l~~~~~~~~~~~~~~~~~~~dD~~lG~Cl~~~lGV~~~~ 208 (280)
T 2j0a_A 133 RPIHA---SELQSKQRTKLVRFW-FATGGAGFCINRQLALKMVPWASGSHFVDTSALIRLPDDCTVGYIIECKLGGRLQP 208 (280)
T ss_dssp ---------------------CC-EECGGGCEEEEHHHHHHHHHHHTTCTTSCCTTTTTSCHHHHHHHHHHHTTCCCEEE
T ss_pred ccccc---cccCccccccccccC-cccCCCEEEECHHHHHHHHHhhcccccccccccCCCCccHHHHHHHHhcCCCCcee
Confidence 77663 455554444444565 55 6789999999999999765432 223468999999998 99999999
Q ss_pred cCCceecCCC---CCccccce--eEEEe
Q psy14347 273 CGEFYFYKKD---YSLHNYQY--VIASH 295 (316)
Q Consensus 273 ~~~f~~~~~~---~~~c~~~~--~i~~H 295 (316)
.++|+.+... +.++.+.. .+++|
T Consensus 209 ~~~Fh~~~~~~~~~~~~~l~~~~~~s~~ 236 (280)
T 2j0a_A 209 SPLFHSHLETLQLLGAAQLPEQVTLSYG 236 (280)
T ss_dssp CTTCCCSSSCGGGCCTTTGGGCSEEECE
T ss_pred cccccCCCchhccCCHHHhccCcceecc
Confidence 9999976542 45666544 44555
No 2
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=96.09 E-value=0.32 Score=46.51 Aligned_cols=197 Identities=6% Similarity=0.014 Sum_probs=100.0
Q ss_pred CeeEEEEEEcCCCC-HHHHHHHHHHhcCCcCCCCcCEEEEEEecCCCCChhHHHHHHHHHHHCC-CEEEeeeccCCCCch
Q psy14347 44 QIRVVYIVKSALRH-FERRLAIRQSWGYEKRFSDVPIVTVFILGYDPDNEGLQIEIAEESERYN-DIVQAKFIDSYFNNT 121 (316)
Q Consensus 44 ~~~lli~V~S~~~~-~~rR~~IR~TW~~~~~~~~~~v~~vFvlG~~~~~~~~~~~l~~E~~~~~-DIl~~d~~DsY~Nlt 121 (316)
.+.+-|+|.+--+. ...+..|+.--.+.. ......++.|-..+. ++...+.|++-.+.+. .+..+...+. .-
T Consensus 28 ~p~vSVIIp~yN~~~~~l~~~l~Sl~~q~~--~~~~~EIIvVDd~S~-d~~t~~~l~~~~~~~~~~v~vi~~~~n---~G 101 (472)
T 1xhb_A 28 LPTTSVVIVFHNEAWSTLLRTVHSVINRSP--RHMIEEIVLVDDASE-RDFLKRPLESYVKKLKVPVHVIRMEQR---SG 101 (472)
T ss_dssp CCCEEEEEEESSCCHHHHHHHHHHHHHSSC--GGGEEEEEEEECSCC-CGGGTHHHHHHHHSSSSCEEEEECSSC---CC
T ss_pred CCCeEEEEEeCCCCHHHHHHHHHHHHhcCc--HhHceEEEEEECCCC-cHHHHHHHHHHHHHCCCcEEEEECCCC---CC
Confidence 34556666665443 333333333222211 122245665554444 4445555666556676 4555544332 22
Q ss_pred HHHHHHHHHHHHHCCCccEEEEeCCceEEeHHHHHHHHhcCCCCCcccccchhhhhccccccccCCCCCcceEEEEee--
Q psy14347 122 IKTMMGFKWAANYCKHSKFYFFADDDFYVSTRNVLRFLRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKLFSGFVF-- 199 (316)
Q Consensus 122 ~K~~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ly~G~~~-- 199 (316)
...+.....+.. ..+|++..|+|+.+.++-|...+..... ......+|.+.
T Consensus 102 --~~~a~N~g~~~A-~gd~i~flD~D~~~~p~~L~~ll~~~~~------------------------~~~~~v~~~~~~~ 154 (472)
T 1xhb_A 102 --LIRARLKGAAVS-RGQVITFLDAHCECTAGWLEPLLARIKH------------------------DRRTVVCPIIDVI 154 (472)
T ss_dssp --HHHHHHHHHHHC-CSSEEEEEESSEEECTTCHHHHHHHHHH------------------------CTTEEEEEEEEEE
T ss_pred --hHHHHHHHHHhc-cCCeEEEECCCeEeCccHHHHHHHHHHh------------------------CCCEEEEeeeeeE
Confidence 234555566665 6899999999999998877776654210 01112222211
Q ss_pred cCc---------Ccc-----CCCCCcc-cccc-------CCCCCCcccccccceEEecHHHHHHHHHHhccCCCCCCCch
Q psy14347 200 VSS---------PHR-----HYTSKWY-ISLQ-------EYPYHLWPPYVTAGSYVVSREVLLDFYFASHFTKHFRFDDI 257 (316)
Q Consensus 200 ~~~---------p~r-----~~~~Kw~-v~~~-------~y~~~~yP~y~~G~~yvlS~~~~~~l~~~s~~~~~~~~eDv 257 (316)
... ..+ ....+|. ++.. .......-+++.|+++++++++++++-.-.........||+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iGgfde~~~~~g~ED~ 234 (472)
T 1xhb_A 155 SDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENL 234 (472)
T ss_dssp CSSSCCEECCCTTEEEEECTTCCEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHHHHHHTTSCCTTSCTTCCCCS
T ss_pred cCCCceeccCCCcccceeeccceeecccCCHHHHhcccCCCCCcccCccccceeEEEEHHHHHHcCCCCCcccccCchhH
Confidence 000 000 0000110 1100 00001223577899999999999886321112222347999
Q ss_pred HHHHhhHHcCCceeec
Q psy14347 258 YLGILAKKTNTEPFHC 273 (316)
Q Consensus 258 ~~Gi~~~k~gi~~~~~ 273 (316)
-+++-+.+.|.+....
T Consensus 235 dl~~R~~~~G~~i~~~ 250 (472)
T 1xhb_A 235 EISFRIWQCGGTLEIV 250 (472)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHhcCCeEEEc
Confidence 9988888888665543
No 3
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=94.57 E-value=1.1 Score=38.34 Aligned_cols=160 Identities=9% Similarity=-0.052 Sum_probs=82.4
Q ss_pred CEEEEEEecCCCCChhHHHHHHHHHHHCCCEEEeeeccCC-----CCchHHHHHHHHHHHHHCCCccEEEEeCCceEEeH
Q psy14347 78 PIVTVFILGYDPDNEGLQIEIAEESERYNDIVQAKFIDSY-----FNNTIKTMMGFKWAANYCKHSKFYFFADDDFYVST 152 (316)
Q Consensus 78 ~v~~vFvlG~~~~~~~~~~~l~~E~~~~~DIl~~d~~DsY-----~Nlt~K~~~~l~w~~~~c~~~~fvlk~DDD~~Vn~ 152 (316)
.+.++.+-..+. + ...+ +.++......|........- .|.- .-.+++.+.+.+ +.+|++..|+|.++.+
T Consensus 30 ~~eiivvDd~S~-d-~t~~-~~~~~~~~~~i~~i~~~~~~~~~~~~n~G--~~~a~N~gi~~a-~g~~i~~lD~Dd~~~~ 103 (255)
T 1qg8_A 30 DFELFIMDDNSN-E-ETLN-VIRPFLNDNRVRFYQSDISGVKERTEKTR--YAALINQAIEMA-EGEYITYATDDNIYMP 103 (255)
T ss_dssp CEEEEEEECSCC-H-HHHH-HHGGGGGSTTEEEEECCCCSHHHHHSSCH--HHHHHHHHHHHC-CCSEEEEEETTEEECT
T ss_pred ceEEEEEECCCC-c-hHHH-HHHHHhhcCCEEEEecccccccccccccC--HHHHHHHHHHHc-CCCEEEEeCCCCccCh
Confidence 466666655444 3 2222 33343334556554432100 2332 344667777776 7899999999999998
Q ss_pred HHHHHHHhcCCCCCcccccchhhhhccccccccCCCCCcceEEEEeecC--cCccCCCCCccccccCCCCCCcccccccc
Q psy14347 153 RNVLRFLRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKLFSGFVFVS--SPHRHYTSKWYISLQEYPYHLWPPYVTAG 230 (316)
Q Consensus 153 ~~L~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ly~G~~~~~--~p~r~~~~Kw~v~~~~y~~~~yP~y~~G~ 230 (316)
+.|...+..... .+...+.+|.+... .........+..|..... .....++.|+
T Consensus 104 ~~l~~~~~~~~~-----------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 159 (255)
T 1qg8_A 104 DRLLKMVRELDT-----------------------HPEKAVIYSASKTYHLNENRDIVKETVRPAAQVT-WNAPCAIDHC 159 (255)
T ss_dssp THHHHHHHHHHH-----------------------CTTCCEEEEEEEEEEEC---CEEEEEEECCCSCB-SCCTTTSCGG
T ss_pred HHHHHHHHHHHh-----------------------CCCceEEEeceEEEEeCCCCcchhhccCchHHHH-HhhcCCCccc
Confidence 877776654210 12233444433210 000000001111111111 1234466789
Q ss_pred eEEecHHHHHHHHHHh-----ccCCCCCCCchHHHHhhHHcC
Q psy14347 231 SYVVSREVLLDFYFAS-----HFTKHFRFDDIYLGILAKKTN 267 (316)
Q Consensus 231 ~yvlS~~~~~~l~~~s-----~~~~~~~~eDv~~Gi~~~k~g 267 (316)
+.++.+++++.+-..- ........||..+..-+.+.|
T Consensus 160 ~~~~rr~~~~~~g~~f~~~~~~~~~~~~~eD~~~~~r~~~~g 201 (255)
T 1qg8_A 160 SVMHRYSVLEKVKEKFGSYWDESPAFYRIGDARFFWRVNHFY 201 (255)
T ss_dssp GEEEETHHHHHHHHHHSSSSCCCGGGSTTHHHHHHHHHTTTC
T ss_pred eEEEEHHHHHhhcccccccccCCcccchHHHHHHHHHHHHhC
Confidence 9999999999875111 012234579998876655555
No 4
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=93.88 E-value=0.42 Score=48.35 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=36.2
Q ss_pred ccccccceEEecHHHHHHHHHHhccCCCCCCCchHHHHhhHHcCCceeecC
Q psy14347 224 PPYVTAGSYVVSREVLLDFYFASHFTKHFRFDDIYLGILAKKTNTEPFHCG 274 (316)
Q Consensus 224 P~y~~G~~yvlS~~~~~~l~~~s~~~~~~~~eDv~~Gi~~~k~gi~~~~~~ 274 (316)
..|++|++.++.+++++.+-- ...-.+..||+-+++-+.+.|.+....+
T Consensus 362 v~~~~g~~~lirr~v~~~vGg--fd~~F~~~ED~Dl~lR~~~~G~ki~~~p 410 (657)
T 4fix_A 362 VDYNGWWTCMIPRQVAEELGQ--PLPLFIKWDDADYGLRAAEHGYPTVTLP 410 (657)
T ss_dssp CSBCCTTEEEEEHHHHHHHCS--CCSCSSSSHHHHHHHHHHHTTCCEEEEE
T ss_pred ccccchhHhHhhHHHHHHhCC--ChhHhccCcHHHHHHHHHHcCCeEEEEC
Confidence 458899999999999998631 2212345799999998888997765443
No 5
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=93.82 E-value=1.7 Score=42.92 Aligned_cols=76 Identities=9% Similarity=0.052 Sum_probs=47.0
Q ss_pred EEEEEEecCCCCChhHHHHHHHHHHHCCCEEEeeeccCCCCchHHHHHHHHHHHHHCCCccEEEEeCCceEEeHHHHHHH
Q psy14347 79 IVTVFILGYDPDNEGLQIEIAEESERYNDIVQAKFIDSYFNNTIKTMMGFKWAANYCKHSKFYFFADDDFYVSTRNVLRF 158 (316)
Q Consensus 79 v~~vFvlG~~~~~~~~~~~l~~E~~~~~DIl~~d~~DsY~Nlt~K~~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~ 158 (316)
..++.|-..+. +.++.+.|++..+.+..|..+..... ..+ ..+.....+.. ..+|++..|+|+.+.++-|..+
T Consensus 145 ~EIIVVDDgS~-D~tl~~~l~~~~~~~~~v~vi~~~~n-~G~----~~A~N~G~~~A-~gd~i~fLD~D~~~~p~~L~~l 217 (570)
T 2d7i_A 145 AEIVLVDDFSD-REHLKKPLEDYMALFPSVRILRTKKR-EGL----IRTRMLGASVA-TGDVITFLDSHCEANVNWLPPL 217 (570)
T ss_dssp EEEEEEECSCC-CGGGTHHHHHHHTTSTTEEEEECSSC-CCH----HHHHHHHHHHC-CSSEEEECCSSEEECTTCSHHH
T ss_pred EEEEEEECCCC-cHHHHHHHHHHHHhCCeEEEEECCCC-CCH----HHHHHHHHHhc-CCCEEEEEcCCccccccHHHHH
Confidence 35665554454 55545566666666766665544332 122 23455555555 6799999999999988766655
Q ss_pred Hhc
Q psy14347 159 LRN 161 (316)
Q Consensus 159 L~~ 161 (316)
+..
T Consensus 218 l~~ 220 (570)
T 2d7i_A 218 LDR 220 (570)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 6
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=93.15 E-value=2.3 Score=40.89 Aligned_cols=72 Identities=10% Similarity=0.036 Sum_probs=44.6
Q ss_pred EEEEEEecCCCCChhHHHHHHHHHHHCCCEEEeeeccCCCCchHHHHHHHHHHHHHCCCccEEEEeCCceEEeHHHHHHH
Q psy14347 79 IVTVFILGYDPDNEGLQIEIAEESERYNDIVQAKFIDSYFNNTIKTMMGFKWAANYCKHSKFYFFADDDFYVSTRNVLRF 158 (316)
Q Consensus 79 v~~vFvlG~~~~~~~~~~~l~~E~~~~~DIl~~d~~DsY~Nlt~K~~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~ 158 (316)
..+++|-..+. +.+.. ...+.+..+-.+.... |.- ...+.....+.. ..+|++..|+|+.+.++-|..+
T Consensus 99 ~EIIvVDDgS~-D~t~~----~~~~~~~~v~vi~~~~---n~G--~~~A~N~G~~~A-~gd~i~flD~D~~~~p~~L~~l 167 (501)
T 2ffu_A 99 KEIILVDDYSN-DPEDG----ALLGKIEKVRVLRNDR---REG--LMRSRVRGADAA-QAKVLTFLDSHCECNEHWLEPL 167 (501)
T ss_dssp EEEEEEECSCS-CTHHH----HGGGGBTTEEEEECSS---CCH--HHHHHHHHHHHC-CSSEEEECCSSEEECTTCHHHH
T ss_pred eeEEEEECCCC-chHHH----HHHhcCCCEEEEECCC---CcC--HHHHHHHHHHhc-CCCEEEEECCCcccCccHHHHH
Confidence 46666655554 44432 2234556665554333 332 234556666666 6899999999999998877776
Q ss_pred Hhc
Q psy14347 159 LRN 161 (316)
Q Consensus 159 L~~ 161 (316)
+..
T Consensus 168 l~~ 170 (501)
T 2ffu_A 168 LER 170 (501)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 7
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=91.17 E-value=1.9 Score=36.45 Aligned_cols=75 Identities=16% Similarity=0.202 Sum_probs=48.2
Q ss_pred CEEEEEEecCCCCChhHHHHHHHHHHHCCCEEEeeeccCCCCchHHHHHHHHHHHHHCCCccEEEEeCCceEEeHHHHHH
Q psy14347 78 PIVTVFILGYDPDNEGLQIEIAEESERYNDIVQAKFIDSYFNNTIKTMMGFKWAANYCKHSKFYFFADDDFYVSTRNVLR 157 (316)
Q Consensus 78 ~v~~vFvlG~~~~~~~~~~~l~~E~~~~~DIl~~d~~DsY~Nlt~K~~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~ 157 (316)
.+.++.|-..+. +. ..+.+++-.+++..|.... .+ |.- .-.+.+...+.+ ..+|++.+|+|.++.++.|..
T Consensus 34 ~~eiIvvDd~S~-d~-t~~~~~~~~~~~~~i~~i~-~~---n~G--~~~a~N~g~~~a-~g~~i~~lD~Dd~~~~~~l~~ 104 (240)
T 3bcv_A 34 DIEIILIDDESP-DN-CPKICDDYAAQYPNIKVIH-KK---NAG--LGMACNSGLDVA-TGEYVAFCDSDDYVDSDMYMT 104 (240)
T ss_dssp SEEEEEEECCCS-SS-HHHHHHHHHHHCSSEEEEE-CC---CCC--HHHHHHHHHHHC-CSSEEEECCTTCCCCTTHHHH
T ss_pred CeEEEEEECCCC-cC-HHHHHHHHHhhCCCEEEEE-CC---CCC--hHHHHHHHHHHc-CCCEEEEECCCCcCCHHHHHH
Confidence 466666655444 33 3445555556677776664 22 332 234556666666 679999999999999887777
Q ss_pred HHhc
Q psy14347 158 FLRN 161 (316)
Q Consensus 158 ~L~~ 161 (316)
.+..
T Consensus 105 l~~~ 108 (240)
T 3bcv_A 105 MYNV 108 (240)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 8
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=86.66 E-value=13 Score=38.10 Aligned_cols=124 Identities=13% Similarity=0.032 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHHHCCCccEEEEeCCceEEeHHHHHHHHhcCCCCCcccccchhhhhccccccccCCCCCcceEEEEee-
Q psy14347 121 TIKTMMGFKWAANYCKHSKFYFFADDDFYVSTRNVLRFLRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKLFSGFVF- 199 (316)
Q Consensus 121 t~K~~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ly~G~~~- 199 (316)
..|.- +++...+.+ +.+|++.+|+|+.+..+.|.+.+..... +++..+.+|...
T Consensus 224 ~GKa~-alN~gl~~a-~gd~Il~lDaD~~~~pd~L~~lv~~~~~-----------------------dp~v~~V~~~~~~ 278 (802)
T 4hg6_A 224 HAKAG-NMSAALERL-KGELVVVFDADHVPSRDFLARTVGYFVE-----------------------DPDLFLVQTPHFF 278 (802)
T ss_dssp SHHHH-HHHHHHHHC-CCSEEEECCTTEEECTTHHHHHHHHHHH-----------------------SSSCCEEECCCCB
T ss_pred CcchH-HHHHHHHhc-CCCEEEEECCCCCcChHHHHHHHHHHhc-----------------------CCCeEEEeccEEE
Confidence 34443 567777776 7899999999999998887776654210 122333433322
Q ss_pred -cCcCccCCCCCcc-cccc---CCC------CCCcccccccceEEecHHHHHHHHHHhccCCCCCCCchHHHHhhHHcCC
Q psy14347 200 -VSSPHRHYTSKWY-ISLQ---EYP------YHLWPPYVTAGSYVVSREVLLDFYFASHFTKHFRFDDIYLGILAKKTNT 268 (316)
Q Consensus 200 -~~~p~r~~~~Kw~-v~~~---~y~------~~~yP~y~~G~~yvlS~~~~~~l~~~s~~~~~~~~eDv~~Gi~~~k~gi 268 (316)
+..|.....+.+. ++.+ .|. ...--+++.|++.++.+++++++- ......-.||..++.-+.+.|.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~vG---gf~~~~~~ED~~l~~rl~~~G~ 355 (802)
T 4hg6_A 279 INPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSAAVLRRRALDEAG---GFAGETITEDAETALEIHSRGW 355 (802)
T ss_dssp SSCCHHHHHHTCCTTSCCTTHHHHHTHHHHHHHTTCCCCCSSSEEEEHHHHHHHT---TCCCSSSSHHHHHHHHHHTTTC
T ss_pred eCCchHhhhhhHHhhhhHHHHHHHHHHHhhHhhcCCceecccchhhhHHHHHHcC---CcCCCCcchHHHHHHHHHHcCC
Confidence 1111000000000 0000 000 000113467999999999999762 1111223599999999888887
Q ss_pred ceee
Q psy14347 269 EPFH 272 (316)
Q Consensus 269 ~~~~ 272 (316)
+...
T Consensus 356 ri~~ 359 (802)
T 4hg6_A 356 KSLY 359 (802)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 6543
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=85.29 E-value=9.5 Score=37.48 Aligned_cols=75 Identities=11% Similarity=-0.004 Sum_probs=46.8
Q ss_pred CEEEEEEecCCCCChhHHHHHHHHHHHCCCEEEeeeccCCCCchHHHHHHHHHHHHHCCCccEEEEeCCceEEeHHHHHH
Q psy14347 78 PIVTVFILGYDPDNEGLQIEIAEESERYNDIVQAKFIDSYFNNTIKTMMGFKWAANYCKHSKFYFFADDDFYVSTRNVLR 157 (316)
Q Consensus 78 ~v~~vFvlG~~~~~~~~~~~l~~E~~~~~DIl~~d~~DsY~Nlt~K~~~~l~w~~~~c~~~~fvlk~DDD~~Vn~~~L~~ 157 (316)
.+.++.+-..+. |. ..+.+++-.+.+..|.... . .|.- .-.+++...+.+ ..+|++..|+|.++.++.|..
T Consensus 404 ~~eiivvdd~S~-d~-t~~~~~~~~~~~~~i~~~~-~---~n~G--~~~a~n~g~~~a-~g~~i~~ld~D~~~~~~~l~~ 474 (625)
T 2z86_A 404 DLEVCICDDGST-DD-TLRILQEHYANHPRVRFIS-Q---KNKG--IGSASNTAVRLC-RGFYIGQLDSDDFLEPDAVEL 474 (625)
T ss_dssp SEEEEEEEESCS-SS-HHHHHHHHHTTCTTEEEEE-E---CCCC--HHHHHHHHHHHC-CSSEEEECCTTCEECTTHHHH
T ss_pred CeEEEEEECcCC-hh-HHHHHHHHHhhCCcEEEEe-C---CCCC--HHHHHHHHHHhc-CCCEEEEECCCcccChhHHHH
Confidence 466666655554 43 3344544445566666553 2 2332 234556666666 779999999999999888877
Q ss_pred HHhc
Q psy14347 158 FLRN 161 (316)
Q Consensus 158 ~L~~ 161 (316)
.+..
T Consensus 475 ~~~~ 478 (625)
T 2z86_A 475 CLDE 478 (625)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 10
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=83.44 E-value=19 Score=35.24 Aligned_cols=45 Identities=9% Similarity=-0.018 Sum_probs=32.3
Q ss_pred ccccceEEecHHHHHHHHHHhccCCCC--CCCchHHHHhhHHcCCceee
Q psy14347 226 YVTAGSYVVSREVLLDFYFASHFTKHF--RFDDIYLGILAKKTNTEPFH 272 (316)
Q Consensus 226 y~~G~~yvlS~~~~~~l~~~s~~~~~~--~~eDv~~Gi~~~k~gi~~~~ 272 (316)
++.|++.++++++++.+- ......+ ..||.-+++-+.+.|.+...
T Consensus 275 ~~~g~~~~~rr~~l~~iG--gfde~~~~~g~ED~dl~~Rl~~~G~~i~~ 321 (625)
T 2z86_A 275 FFSGGNVAFAKKWLFRAG--WFDEEFTHWGGEDNEFGYRLYREGCYFRS 321 (625)
T ss_dssp GCCTTEEEEETHHHHHHC--CCCTTCSSCCCHHHHHHHHHHHTTCEEEE
T ss_pred EEeeceeeeEHHHHHHhC--CCccccccCCcchhhhhhhHHhCCceEEE
Confidence 578999999999999872 1222222 36999999888888865543
No 11
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=80.44 E-value=9.6 Score=32.47 Aligned_cols=131 Identities=11% Similarity=0.130 Sum_probs=72.9
Q ss_pred HHHHHHHHCCCEEEeeeccCCCCchH-HHHHHHHHHHHHCCCccEEEEeCCc---eEEeHHHHHHHHhcCCCCCcccccc
Q psy14347 97 EIAEESERYNDIVQAKFIDSYFNNTI-KTMMGFKWAANYCKHSKFYFFADDD---FYVSTRNVLRFLRNPLQYPQYLELP 172 (316)
Q Consensus 97 ~l~~E~~~~~DIl~~d~~DsY~Nlt~-K~~~~l~w~~~~c~~~~fvlk~DDD---~~Vn~~~L~~~L~~~~~~~~~l~~~ 172 (316)
.|+.+..+.|==+++.+.++ .++. .-.+.=+|+.+ .++++++.+|-| .-.+++.+.++|..
T Consensus 16 ~l~~~l~~~gi~~~l~~~~S--lI~raRN~lv~~Fl~~--~~~dhllfIDAD~~~I~FdPe~V~rLl~~----------- 80 (203)
T 2c0n_A 16 PLIDFLVKNDIEYVILSRRN--HVAVQREIALDMFLEM--KDYDTLAFLDEDVVPIEIDFQKVEAKFNE----------- 80 (203)
T ss_dssp HHHHHHHHTTCCEEEECCCS--CHHHHHHHHHHHHHHC--TTCCEEEEECTTEEEEECCHHHHHHHHHH-----------
T ss_pred HHHHHHHhCCCeEEEEcccc--chHHHHHHHHHHHHhc--CCCCEEEEEeCCCCccccCHHHHHHHHhC-----------
Confidence 35555555553344444422 2222 22222335554 378999999999 99999999999964
Q ss_pred hhhhhccccccccCCCCCcceEEEEeecCcCccCCCCCccccccCCCCCCc---ccccccceEEecHHHHHHHHHHhcc-
Q psy14347 173 IETIQSKSNIMDYELPSDVKLFSGFVFVSSPHRHYTSKWYISLQEYPYHLW---PPYVTAGSYVVSREVLLDFYFASHF- 248 (316)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~ly~G~~~~~~p~r~~~~Kw~v~~~~y~~~~y---P~y~~G~~yvlS~~~~~~l~~~s~~- 248 (316)
..++.+|... .+... +...-...|..... -.||++|+-++++++++.|.+....
T Consensus 81 -----------------g~DVV~GsYp----~K~~~-~~s~~a~~y~~~i~~~~V~d~~tGF~lIkR~V~e~L~~p~fl~ 138 (203)
T 2c0n_A 81 -----------------GYDVVCGYYY----LKTLR-GYSVYRKDWEKEIFDGEVNGCGLGFTFIKREFLEKIKRPAFLA 138 (203)
T ss_dssp -----------------TCSEEEEECB----CTTSS-SBSEESSSBCSSCCCEECSEECSSEEEEEHHHHTTSCSSCCCC
T ss_pred -----------------CCCEEEEEee----ccCCC-ccchHHHHHHHhccCceeeeccccEEEEhHHHHHHHhhhhhhc
Confidence 2467777643 21100 00000112322211 1488889999999999998655431
Q ss_pred -----CCCCCCCchHHHHhhH
Q psy14347 249 -----TKHFRFDDIYLGILAK 264 (316)
Q Consensus 249 -----~~~~~~eDv~~Gi~~~ 264 (316)
.+-.--|||++=..++
T Consensus 139 ~~~~e~~~~~gEdv~F~~~~k 159 (203)
T 2c0n_A 139 FKPIESPHWIGEDVYFFSTHK 159 (203)
T ss_dssp ---------CCHHHHHHHHHC
T ss_pred CChhhhccccCCceEEEeccc
Confidence 1122347888754444
No 12
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=41.80 E-value=22 Score=31.88 Aligned_cols=34 Identities=12% Similarity=0.095 Sum_probs=25.4
Q ss_pred HHHHHHHHCCCccEEEEeCCceE-EeHHHHHHHHhc
Q psy14347 127 GFKWAANYCKHSKFYFFADDDFY-VSTRNVLRFLRN 161 (316)
Q Consensus 127 ~l~w~~~~c~~~~fvlk~DDD~~-Vn~~~L~~~L~~ 161 (316)
+++...+.+ ..+|++.+|+|.. +.++.|...+..
T Consensus 122 a~n~g~~~a-~gd~i~~lD~D~~~~~p~~l~~l~~~ 156 (329)
T 3ckj_A 122 ALWRSLAAS-RGDIVVFVDSDLINPHPMFVPWLVGP 156 (329)
T ss_dssp HHHHHHHHC-CCSEEEECCTTEESCCTTHHHHHHHH
T ss_pred HHHHHHHhC-CCCEEEEECCCCCCcChHHHHHHHHH
Confidence 445555665 6799999999999 888777666553
No 13
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=36.55 E-value=60 Score=24.83 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=36.5
Q ss_pred EEcCCCCHHHHHHHHHHhcCCcCCCCcCEEEEEEecCCCCChhHHHHHHHHHHHCCCEEEe
Q psy14347 51 VKSALRHFERRLAIRQSWGYEKRFSDVPIVTVFILGYDPDNEGLQIEIAEESERYNDIVQA 111 (316)
Q Consensus 51 V~S~~~~~~rR~~IR~TW~~~~~~~~~~v~~vFvlG~~~~~~~~~~~l~~E~~~~~DIl~~ 111 (316)
|.|-....+-|..||+.|-+... . .++-++. +. +.++-....+|+++-|=-+..
T Consensus 55 vrtvedkedfrenireiwerypq---l--dvvvivt-td-dkewikdfieeakergvevfv 108 (162)
T 2l82_A 55 VRTVEDKEDFRENIREIWERYPQ---L--DVVVIVT-TD-DKEWIKDFIEEAKERGVEVFV 108 (162)
T ss_dssp EEECCSHHHHHHHHHHHHHHCTT---C--CEEEEEE-CC-CHHHHHHHHHHHHHTTCEEEE
T ss_pred eeeeccHHHHHHHHHHHHHhCCC---C--cEEEEEe-cC-cHHHHHHHHHHHHhcCcEEEE
Confidence 45556667788999999987543 2 2333443 33 677888888899888855544
No 14
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=30.07 E-value=72 Score=22.98 Aligned_cols=68 Identities=19% Similarity=0.178 Sum_probs=36.7
Q ss_pred EcCCCCHHHHHHHHHHhcCCcCCCCcCEEEEEEecCCCCChhHHHHHHHHHHHCCCEEEeeeccCC--CCchHHHHHHHH
Q psy14347 52 KSALRHFERRLAIRQSWGYEKRFSDVPIVTVFILGYDPDNEGLQIEIAEESERYNDIVQAKFIDSY--FNNTIKTMMGFK 129 (316)
Q Consensus 52 ~S~~~~~~rR~~IR~TW~~~~~~~~~~v~~vFvlG~~~~~~~~~~~l~~E~~~~~DIl~~d~~DsY--~Nlt~K~~~~l~ 129 (316)
.|+.+..+-|+.|...=. +|.. -++|+-|.++++ ..+.+.|+++-| +-.|...+- ..||..+..+++
T Consensus 32 rtatssqdirdiiksmkd-----ngkp-lvvfvngasqnd---vnefqneakkeg--vsydvlkstdpeeltqrvreflk 100 (112)
T 2lnd_A 32 RTATSSQDIRDIIKSMKD-----NGKP-LVVFVNGASQND---VNEFQNEAKKEG--VSYDVLKSTDPEELTQRVREFLK 100 (112)
T ss_dssp EEECSHHHHHHHHHHHTT-----CCSC-EEEEECSCCHHH---HHHHHHHHHHHT--CEEEEEECCCHHHHHHHHHHHHH
T ss_pred eeccchhhHHHHHHHHHh-----cCCe-EEEEecCccccc---HHHHHHHHHhcC--cchhhhccCCHHHHHHHHHHHHH
Confidence 444555666666654422 3443 478999987722 245677777666 222222221 235666665555
Q ss_pred H
Q psy14347 130 W 130 (316)
Q Consensus 130 w 130 (316)
-
T Consensus 101 t 101 (112)
T 2lnd_A 101 T 101 (112)
T ss_dssp H
T ss_pred h
Confidence 4
Done!