RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14347
(316 letters)
>gnl|CDD|216686 pfam01762, Galactosyl_T, Galactosyltransferase. This family
includes the galactosyltransferases
UDP-galactose:2-acetamido-2-deoxy-D-glucose3beta-
galactosyltransferase and UDP-Gal:beta-GlcNAc beta
1,3-galactosyltranferase. Specific
galactosyltransferases transfer galactose to GlcNAc
terminal chains in the synthesis of the lacto-series
oligosaccharides types 1 and 2.
Length = 196
Score = 142 bits (360), Expect = 2e-41
Identities = 56/217 (25%), Positives = 91/217 (41%), Gaps = 24/217 (11%)
Query: 59 ERRLAIRQSWGYEKRFSDVPIVTVFILGYDPDNEG-LQIEIAEESERYNDIVQAKFIDSY 117
RR AIR++W + I ++F++G D +G ++ + EE++ Y DIV F D+Y
Sbjct: 1 ARRNAIRKTWMNKGNSEGGRIKSLFLVGLSADTDGKVKDLVMEEAKLYGDIVVVDFEDTY 60
Query: 118 FNNTIKTMMGFKWAANYCKHSKFYFFADDDFYVSTRNVLRFLRNPLQYPQYLELPIETIQ 177
N T KT+ G +A + +K+ DDD Y +L L P ++
Sbjct: 61 ENLTFKTLTGLLYAVSKAPSAKYIGKIDDDVYFFPDKLLSLLDRGNINPSESSFYGYVMK 120
Query: 178 SKSNIMDYELPSDVKLFSGFVFVSSPHRHYTSKWYISLQEYPYHLWPPYVTAGSYVVSRE 237
I R+ SKWY+ +YP +PPY + Y++SR+
Sbjct: 121 EGPVI----------------------RNKKSKWYVPPSDYPCSRYPPYASGPFYLLSRD 158
Query: 238 VLLDFYFASHFTKHFRFDDIYL-GILAKKTNTEPFHC 273
AS + + +D+Y+ GILA
Sbjct: 159 AAELLLKASKHRRFLQIEDVYVTGILADDLGISRVDL 195
>gnl|CDD|215596 PLN03133, PLN03133, beta-1,3-galactosyltransferase; Provisional.
Length = 636
Score = 68.7 bits (168), Expect = 6e-13
Identities = 77/281 (27%), Positives = 121/281 (43%), Gaps = 59/281 (20%)
Query: 51 VKSALRHFERRLAIRQSWGYEKRFSDVPIVTV---FILGYDPDNEGLQIEIAEESERYND 107
V S +F+RR+A+R++W ++ V V F +G N+ + E+ E+ Y D
Sbjct: 391 VFSTANNFKRRMAVRRTW---MQYDAVRSGAVAVRFFVGLH-KNQMVNEELWNEARTYGD 446
Query: 108 IVQAKFIDSYFNNTIKT----MMGFKWAANYCKHSKFYFFADDDFYVSTRNVLRFLRNPL 163
I F+D Y T KT + G + + +K+ DDD +V VL L
Sbjct: 447 IQLMPFVDYYSLITWKTLAICIFGTEVVS-----AKYVMKTDDDAFVRVDEVLASL---- 497
Query: 164 QYPQYLELPIETIQSKSNIMDYELPSDVKLFSGFVFVSSPHRHYTSKWYISLQEYPYHLW 223
++N+ S L+ S PHR+ SKWYIS +E+P +
Sbjct: 498 --------------KRTNV------SHGLLYGLINSDSQPHRNPDSKWYISPEEWPEETY 537
Query: 224 PPYVTAGSYVVSREVLLDFY--FASHFTKHFRFDDIYLGIL---AKKTNTEPFHCGEFYF 278
PP+ YVVSR++ + Y K F+ +D+ +GI KK E
Sbjct: 538 PPWAHGPGYVVSRDIAKEVYKRHKEGRLKMFKLEDVAMGIWIAEMKKEGLEV-------K 590
Query: 279 YKKDYSLHNYQ----YVIASHGYGNHDELLRVWNE-QRGIG 314
Y+ D ++N YV+A H Y + E+L +W + Q G
Sbjct: 591 YENDGRIYNEGCKDGYVVA-H-YQSPREMLCLWQKLQEGKR 629
>gnl|CDD|224618 COG1704, LemA, Uncharacterized conserved protein [Function
unknown].
Length = 185
Score = 31.5 bits (72), Expect = 0.39
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 6/56 (10%)
Query: 91 NEGLQIEIAEESERYNDIVQAKFIDSYFNNTIKTMMGFKWAANYCKHSKFYFFADD 146
EG + IA YN+ V+ +N I++ A + +K FF
Sbjct: 127 LEGTENRIAVARRLYNEAVRD------YNVKIRSFPSNIVAKLFGFKAKPNFFQAK 176
>gnl|CDD|235050 PRK02546, PRK02546, NAD(P)H-quinone oxidoreductase subunit 4;
Provisional.
Length = 525
Score = 30.4 bits (69), Expect = 1.2
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 5/28 (17%)
Query: 79 IVTVFILGYDPDNEGLQIEIAEESERYN 106
V F GYD N GLQ+ E Y+
Sbjct: 50 TVYAFYTGYDFSNPGLQL-----VESYS 72
>gnl|CDD|216679 pfam01751, Toprim, Toprim domain. This is a conserved region from
DNA primase. This corresponds to the Toprim domain
common to DnaG primases, topoisomerases, OLD family
nucleases and RecR proteins. Both DnaG motifs IV and V
are present in the alignment, the DxD (V) motif may be
involved in Mg2+ binding and mutations to the conserved
glutamate (IV) completely abolish DnaG type primase
activity. DNA primase EC:2.7.7.6 is a
nucleotidyltransferase it synthesises the
oligoribonucleotide primers required for DNA replication
on the lagging strand of the replication fork; it can
also prime the leading stand and has been implicated in
cell division. This family also includes the atypical
archaeal A subunit from type II DNA topoisomerases. Type
II DNA topoisomerases catalyze the relaxation of DNA
supercoiling by causing transient double strand breaks.
Length = 86
Score = 28.0 bits (63), Expect = 1.6
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 84 ILGYDPDNEGLQI--EIAEESERYNDIVQAKFI 114
IL DPD EG I ++ E + I + +
Sbjct: 52 ILATDPDREGEAIALKLLELLKPLGPIGRVEIS 84
>gnl|CDD|182895 PRK11006, phoR, phosphate regulon sensor protein; Provisional.
Length = 430
Score = 29.6 bits (67), Expect = 2.1
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 50 IVKSALRHFERRLAIRQSWGYEKRFS 75
IVK AL H + RL I G RFS
Sbjct: 393 IVKHALSHHDSRLEIESEVGKGTRFS 418
>gnl|CDD|150994 pfam10413, Rhodopsin_N, Amino terminal of the G-protein receptor
rhodopsin. Rhodopsin is the archetypal
G-protein-coupled receptor. Such receptors participate
in virtually all physiological processes, as signalling
molecules. They utilise heterotrimeric guanosine
triphosphate (GTP)-binding proteins to transduce
extracellular signals to intracellular events. Rhodopsin
is important because of the pivotal role it plays in
visual signal transduction. Rhodopsin is a dimeric
transmembrane protein and its intradiskal surface
consists of this amino terminal domain and three loops
connecting six of the seven transmembrane helices. The
N-terminus is a compact domain of alpha-helical regions
with breaks and bends at proline residues outside the
membrane. The transmembrane part of rhodopsin is
represented by 7tm_1 (pfam00001). The N-terminal domain
is extracellular is and is necessary for successful
dimerisation and molecular stability.
Length = 36
Score = 26.2 bits (58), Expect = 2.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 146 DDFYVSTRNVLRFLRNPLQYPQY 168
+FYV N +R+P +YPQY
Sbjct: 6 PNFYVPMSNRTGVVRSPFEYPQY 28
>gnl|CDD|223618 COG0544, Tig, FKBP-type peptidyl-prolyl cis-trans isomerase
(trigger factor) [Posttranslational modification,
protein turnover, chaperones].
Length = 441
Score = 29.2 bits (66), Expect = 2.9
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 89 PDNEGLQIEIAEESERYNDIVQAKFIDSYFNNTIKTMM 126
E ++ EI E + +Y + I Y+NN
Sbjct: 368 VTEEEIKAEIEELARQYGGEQPEEVIKLYYNNQELLDA 405
>gnl|CDD|218536 pfam05282, AAR2, AAR2 protein. This family consists of several
eukaryotic AAR2-like proteins. The yeast protein AAR2 is
involved in splicing pre-mRNA of the a1 cistron and
other genes that are important for cell growth.
Length = 339
Score = 29.2 bits (66), Expect = 3.0
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 82 VFILGYDPDNEGLQIEIAEESERYNDIVQAKFIDSY 117
V +L +D +E L E E E Y + D Y
Sbjct: 66 VLVLKWDSKDETLVPEEESEEEDYRERANLGEFDQY 101
>gnl|CDD|227475 COG5146, PanK, Pantothenate kinase, acetyl-CoA regulated [Coenzyme
metabolism].
Length = 342
Score = 29.2 bits (65), Expect = 3.1
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 97 EIAEESERYNDIVQAKFIDSYFNNTIKTMMGFKWAANY-CKHSKFYFFADDDFY 149
+IA R + F S+ N + TM+ +A K + +F + + Y
Sbjct: 267 QIAYLVAREFNTQNIYFGGSFHRNHLLTMVTLDYAILRWSKPTMNAYFLEHEGY 320
>gnl|CDD|112810 pfam04011, LemA, LemA family. The members of this family are
related to the LemA protein. LemA contains an amino
terminal predicted transmembrane helix. It has been
predicted that the small amino terminus is
extracellular. The exact molecular function of this
protein is uncertain.
Length = 186
Score = 28.1 bits (63), Expect = 4.8
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 92 EGLQIEIAEESERYNDIVQAKFIDSYFNNTIKTMMGFKWA 131
EG + IA YN+ VQ +N I+ A
Sbjct: 128 EGTENRIAVARRDYNEAVQE------YNTKIRQFPSVIVA 161
>gnl|CDD|235846 PRK06654, fliL, flagellar basal body-associated protein FliL;
Reviewed.
Length = 181
Score = 27.8 bits (62), Expect = 5.4
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Query: 75 SDVPIVTVFI---LGYDPDNEGLQIEIAEESERYNDIVQAKFIDSYF 118
+D P T + LGY +N+ + E+ R D I YF
Sbjct: 96 ADTPPKTFVVKLALGYAENNKNILNELGRRKVRLKD-----IIREYF 137
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.441
Gapped
Lambda K H
0.267 0.0668 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,628,177
Number of extensions: 1602479
Number of successful extensions: 1295
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1292
Number of HSP's successfully gapped: 23
Length of query: 316
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 219
Effective length of database: 6,635,264
Effective search space: 1453122816
Effective search space used: 1453122816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.6 bits)