RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14347
(316 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 1e-04
Identities = 53/311 (17%), Positives = 90/311 (28%), Gaps = 119/311 (38%)
Query: 24 YN-YP-----FISKCEQKCAAYNEKEQIRVVYIVKSALRHFERRLAIRQSW--------- 68
Y Y I + + ++ A + F + L I + W
Sbjct: 177 YQTYHVLVGDLIKFSAETLS--------ELIRTTLDAEKVFTQGLNILE-WLENPSNTPD 227
Query: 69 -GYEKRFSDVPI--------------VTVFILGYDPDNEGLQIEIAEESERYNDIVQAKF 113
Y +PI VT +LG+ P L+ + + +V A
Sbjct: 228 KDY---LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE--LRSYLKGATGHSQGLVTAVA 282
Query: 114 I---DSYFNNTIKTMMGFKWAANYCKHSKFYFFADDDFYVSTRNVLRFL-----RNPLQY 165
I DS W + F+VS R + L R Y
Sbjct: 283 IAETDS-------------W---------------ESFFVSVRKAITVLFFIGVRCYEAY 314
Query: 166 PQYLELPIETIQ-SKSNIMDYELPS---------DVKLFSGFVFVSSPHRHYTSKWYISL 215
P LP ++ S N + +PS ++ +V ++ H + ISL
Sbjct: 315 PN-TSLPPSILEDSLEN--NEGVPSPMLSISNLTQEQVQD-YVNKTNSHLPAGKQVEISL 370
Query: 216 QEYPYHLWPPYVTAGS----YVVSREVLLDFYFASH--------FTK-HFRFDDIYLGIL 262
+ V +G Y ++ L A F++ +F + +L +
Sbjct: 371 VNGAKN----LVVSGPPQSLYGLNLT--LRKAKAPSGLDQSRIPFSERKLKFSNRFLPV- 423
Query: 263 AKKTNTEPFHC 273
PFH
Sbjct: 424 -----ASPFHS 429
Score = 35.4 bits (81), Expect = 0.027
Identities = 27/209 (12%), Positives = 49/209 (23%), Gaps = 89/209 (42%)
Query: 28 FISKC--EQKCAAYNEKEQIRVVYIVKSALRHFERR---------------------LAI 64
++S K +++ ++ L FE L
Sbjct: 67 YVSSLVEPSKVGQFDQ--------VLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 65 RQSWG---YEKRF--------------------SDVPIVTVF-----ILGYDPDNEGLQI 96
+ R + +V +F Y +
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY------FE- 171
Query: 97 EIAEESERYNDIVQAKFIDSYFNNTIKTMMGFKWAANYCKHSKFYFFADDDFYVSTRNVL 156
E+ + + Y+ +V I +A + + N+L
Sbjct: 172 ELRDLYQTYHVLVGD-LIKF--------------SAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 157 RFLRNPLQYP--QYLE-----LP-IETIQ 177
+L NP P YL P I IQ
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQ 245
Score = 28.5 bits (63), Expect = 3.3
Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 30/125 (24%)
Query: 148 FYVSTRNVLRF--LRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKLFSGFV-FVSS-- 202
V T + L+ Q+ + L P E + D E + +L F+ +VSS
Sbjct: 20 LLVPTASFFIASQLQE--QFNKILPEPTEGFAA-----DDEPTTPAELVGKFLGYVSSLV 72
Query: 203 ---PHRHYTSKWYISLQEY--PY------H-----LWPPYVTAGSYVVSREVLLDFYFAS 246
+ + L E+ Y H L + V ++E++ ++ A
Sbjct: 73 EPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKL--LQENDTTLVKTKELIKNYITAR 130
Query: 247 HFTKH 251
K
Sbjct: 131 IMAKR 135
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR;
glycosyltransferase, developmental protein,
transmembrane, G apparatus, notch signaling; 1.8A {Mus
musculus} PDB: 2j0b_A*
Length = 280
Score = 41.3 bits (96), Expect = 2e-04
Identities = 34/241 (14%), Positives = 71/241 (29%), Gaps = 52/241 (21%)
Query: 47 VVYIVKSALR-HFERRLAIRQSWGYEKRFSDVPIVTVFILGYDPDNEGLQIEIAEESERY 105
+ VK+ H R + +W S + T + + E +
Sbjct: 15 IFIAVKTTWAFHRSRLDLLLDTWV-----SRIRQQTFIFTDSPDE------RLQERLGPH 63
Query: 106 NDIVQAKFIDSYFNNTIKTMMGFKWAANYCKHSKFYFFADDDFYVSTRNVLRFLRNPLQY 165
+ Q S+ + K F +++ DDD YV+ + +L+ L+
Sbjct: 64 LVVTQCSAEHSHPALSCKMAAEFDA--FLVSGLRWFCHVDDDNYVNPKALLQLLKT---- 117
Query: 166 PQYLELPIETIQSKSNIMDYELPSDVKLFSGFVFVSSPHRHYTSKWYISLQEYPYHLWPP 225
P D ++ G ++ P + + +
Sbjct: 118 ---------------------FPQDRDVYVGKPSLNRPIHASELQSKQRTKLVRF----W 152
Query: 226 YVTAGS-YVVSREVLLDF-------YFASHFTKHFRFDDIYLG-ILAKKTNTEPFHCGEF 276
+ T G+ + ++R++ L +F DD +G I+ K F
Sbjct: 153 FATGGAGFCINRQLALKMVPWASGSHFVDTSALIRLPDDCTVGYIIECKLGGRLQPSPLF 212
Query: 277 Y 277
+
Sbjct: 213 H 213
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 6e-04
Identities = 34/182 (18%), Positives = 59/182 (32%), Gaps = 35/182 (19%)
Query: 94 LQIEIAEESERYNDIVQA---KFIDSYFNNTIKTMMGFKWAANYCKH--------SKFYF 142
+ E E +Y DI+ F+D++ ++ M + H S
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 143 FADDDFYVSTRNVLRFLRNPLQ--YPQYLELPI--ETIQSKSNIMDYE-----LPSDVKL 193
V +F+ L+ Y +L PI E Q Y L +D ++
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYK-FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 194 FSGFVFVSSPHRHYTSKWYISLQEYPYHLWP-PYVT------AGSYVVSREVLLDFYFAS 246
F+ + VS Y+ L++ L P V +G V+ +V L +
Sbjct: 126 FAKY-NVSRLQP------YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 247 HF 248
Sbjct: 179 KM 180
Score = 37.1 bits (85), Expect = 0.008
Identities = 21/124 (16%), Positives = 39/124 (31%), Gaps = 20/124 (16%)
Query: 6 CVEGY----KHDQP-CSTRPINNYNYPFI----SKCEQKCAAYNEKEQIRVVYI----VK 52
V+ Y D ++ Y Y I E R+V++ ++
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH----PERMTLFRMVFLDFRFLE 504
Query: 53 SALRHFERRLAIRQSWGYEKRFSDVPIVTVFILGYDPDNEGLQIEIAEESERYN-DIVQA 111
+RH A S + +I DP E L I + + +++ +
Sbjct: 505 QKIRH--DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562
Query: 112 KFID 115
K+ D
Sbjct: 563 KYTD 566
Score = 35.6 bits (81), Expect = 0.023
Identities = 44/331 (13%), Positives = 89/331 (26%), Gaps = 107/331 (32%)
Query: 23 NYNYPFISKCEQKCAAYNEKEQIRVVYIVKSALRHFERRLAIRQSWGYEKRFSDVPIVTV 82
NY F+ + + +YI E+R ++ ++D +
Sbjct: 88 RINYKFLM--SPIKTEQRQPSMMTRMYI--------EQR---------DRLYNDNQV--- 125
Query: 83 FILGYDPDN-----EGLQIEIAEESERYNDIVQAKFIDSYFNNTIKTMMGF-KW--AANY 134
+ N L++ A R V I ++G K A +
Sbjct: 126 ----FAKYNVSRLQPYLKLRQALLELRPAKNV-----------LIDGVLGSGKTWVALDV 170
Query: 135 CKHSKFY-FFADDDFYVSTRNVLRFLRNPLQYPQYLELPIETIQSKSNIMDYELPSDVKL 193
C K F+++ +N E +E +Q +D S
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNS-----------PETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 194 FSGFVFVSSPHRHYTSKWYIS--LQEYPY--------HLWPPYVTAG------SYVVSRE 237
S + R ++ + + L+ PY ++ + +R
Sbjct: 220 SS-----NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 238 VLLDFYFASHFTKHFRFDDIY--------LGILAKKTNTE------------PFHCGEFY 277
+ + ++ T H D +L K + P
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 278 FYKKDYSLH--NYQYVIASHGYGNHDELLRV 306
+D N+++V N D+L +
Sbjct: 335 ESIRDGLATWDNWKHV-------NCDKLTTI 358
Score = 31.7 bits (71), Expect = 0.37
Identities = 24/110 (21%), Positives = 35/110 (31%), Gaps = 37/110 (33%)
Query: 204 HRHYTSKWYISLQEYPY-HLWPPYVTAGSYVVSREVLLDFYFASHFTKHFR--------- 253
HR Y + + L PPY LD YF SH H +
Sbjct: 446 HRSIVDH-YNIPKTFDSDDLIPPY-------------LDQYFYSHIGHHLKNIEHPERMT 491
Query: 254 -FDDIYL--GILAKK---TNTEPFHCG-------EFYFYKKDYSLHNYQY 290
F ++L L +K +T G + FYK ++ +Y
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 2.6
Identities = 6/31 (19%), Positives = 17/31 (54%), Gaps = 7/31 (22%)
Query: 41 EKEQIRVVYIVKSALRHFER----RLAIRQS 67
EK+ ++ ++++L+ + LAI+ +
Sbjct: 18 EKQALKK---LQASLKLYADDSAPALAIKAT 45
Score = 26.8 bits (58), Expect = 7.2
Identities = 9/51 (17%), Positives = 14/51 (27%), Gaps = 23/51 (45%)
Query: 52 KSALRHFERRLAIRQSWGYEKRFSDVPIVTVFILGYDPDNE-GLQIEIAEE 101
K AL+ + L + Y D+ L I+ E
Sbjct: 19 KQALKKLQASLKL----------------------YADDSAPALAIKATME 47
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate,
indole-3-acetic acid, TDP dependent enzyme, lyase; HET:
TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3
c.36.1.5 c.36.1.9
Length = 552
Score = 28.7 bits (65), Expect = 2.6
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 6/38 (15%)
Query: 80 VTVFILGYDPDNEGLQIE--IAEESERYNDIVQAKFID 115
+ +L +NEG +E I +RYNDI +
Sbjct: 455 PIILVL----NNEGYTVERAIHGAEQRYNDIALWNWTH 488
>3sek_C Follistatin-related protein 3; protein-protein complex, TB domain,
cystine knot motif, TGF- fold, disulfide linked dimer,
follistatin domain (FSD); HET: NAG; 2.40A {Homo sapiens}
PDB: 2kcx_A
Length = 209
Score = 28.4 bits (62), Expect = 2.9
Identities = 12/54 (22%), Positives = 15/54 (27%), Gaps = 8/54 (14%)
Query: 2 NLTACVEGYKHDQPCSTRPI------NNYNYPFISKCEQKCAAYNEKEQIRVVY 49
CV P + P NN Y S C + A I V +
Sbjct: 153 GSAHCVVCRAAPCPVPSSPGQELCGNNNVTYI--SSCHMRQATCFLGRSIGVRH 204
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv
flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A
{Acetobacter pasteurianus}
Length = 566
Score = 27.5 bits (62), Expect = 6.1
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Query: 80 VTVFILGYDPDNEGLQIEIAEESERYNDIVQAKFID--SYFNNTIKTMMGFK 129
V +F++ +N G IEIA YN I + FN +G K
Sbjct: 456 VIIFLI----NNRGYVIEIAIHDGPYNYIKNWDYAGLMEVFNAGEGHGLGLK 503
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.441
Gapped
Lambda K H
0.267 0.0450 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,166,839
Number of extensions: 308093
Number of successful extensions: 716
Number of sequences better than 10.0: 1
Number of HSP's gapped: 708
Number of HSP's successfully gapped: 25
Length of query: 316
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 222
Effective length of database: 4,077,219
Effective search space: 905142618
Effective search space used: 905142618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.4 bits)