BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14348
         (225 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
           Carboxyatractyloside
 pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
          Length = 297

 Score =  325 bits (832), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 155/217 (71%), Positives = 175/217 (80%), Gaps = 1/217 (0%)

Query: 1   MVDCFVRIPKEQGFGAYWRGNMANVIRYFPTQALNFAFKDKYKQIFLGGIDKS-QFWAYF 59
           ++DC VRIPKEQGF ++WRGN+ANVIRYFPTQALNFAFKDKYKQIFLGG+D+  QFW YF
Sbjct: 53  IIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYF 112

Query: 60  XXXXXXXXXXXXTSLCFVYPLDFARTRLGADVGKTGGAREFTGLGDCLTKIFKSDGIVGL 119
                       TSLCFVYPLDFARTRL ADVGK    REFTGLG+C+TKIFKSDG+ GL
Sbjct: 113 AGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGL 172

Query: 120 YRGFGVSVQGIIIYRASYFGFFDTAKGMLPDPKNAGFLVSWGIAQVVTTVAGIVSYPFDT 179
           Y+GF VSVQGIIIYRA+YFG +DTAKGMLPDPKN   +VSW IAQ VT VAG+VSYPFDT
Sbjct: 173 YQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDT 232

Query: 180 VRRRLMMQSGRGKSEIVYKGTLHCWAVIAKTEEQSNF 216
           VRRR+MMQSGR  ++I+Y GT+ CW  IAK E    F
Sbjct: 233 VRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAF 269



 Score = 37.7 bits (86), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 12/123 (9%)

Query: 98  REFTGLGDCLTKIFKSDGIVGLYRGFGVSVQGIIIYRASYFGFFDTAK----GMLPDPKN 153
           +++ G+ DC+ +I K  G +  +RG   +V      +A  F F D  K    G +   K 
Sbjct: 48  KQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQ 107

Query: 154 -----AGFLVSWGIAQVVTTVAGIVSYPFDTVRRRLMMQSGRGKSEIVYKGTLHCWAVIA 208
                AG L S G A   +       YP D  R RL    G+G ++  + G  +C   I 
Sbjct: 108 FWRYFAGNLASGGAAGATSLC---FVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164

Query: 209 KTE 211
           K++
Sbjct: 165 KSD 167



 Score = 33.5 bits (75), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 22/45 (48%)

Query: 78  YPLDFARTRLGADVGKTGGAREFTGLGDCLTKIFKSDGIVGLYRG 122
           YP D  R R+    G+ G    +TG  DC  KI K +G    ++G
Sbjct: 228 YPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKG 272



 Score = 28.9 bits (63), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 20/26 (76%)

Query: 2   VDCFVRIPKEQGFGAYWRGNMANVIR 27
           VDC+ +I K++G  A+++G  +NV+R
Sbjct: 254 VDCWRKIAKDEGPKAFFKGAWSNVLR 279


>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
           Determined By Nmr Molecular Fragment Replacement
          Length = 303

 Score = 36.2 bits (82), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 41/208 (19%), Positives = 75/208 (36%), Gaps = 20/208 (9%)

Query: 10  KEQGFGAYWRGNMANVIRYFPTQALNFAFKDKYKQIFLGGIDKSQFWAYFXXXXXXXXXX 69
           + +G  + + G +A + R     ++     D  KQ +  G + +   +            
Sbjct: 59  RTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGAL- 117

Query: 70  XXTSLCFVYPLDFARTRLGADVGKTGGAREFTGLGDCLTKIFKSDGIVGLYRGFGVSVQG 129
              ++    P D  + R  A   + GG R +    +    I + +GI GL++G   +V  
Sbjct: 118 ---AVAVAQPTDVVKVRFQAQ-ARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVAR 173

Query: 130 IIIYRASYFGFFDTAK------GMLPDPKNAGFLVSWGIAQVVTTVAGIVSYPFDTVRRR 183
             I   +    +D  K       ++ D     F  ++G     T +A     P D V+ R
Sbjct: 174 NAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIAS----PVDVVKTR 229

Query: 184 LMMQSGRGKSEIVYKGTLHCWAVIAKTE 211
             M S  G+    Y    HC   + + E
Sbjct: 230 Y-MNSALGQ----YHSAGHCALTMLRKE 252


>pdb|1NHY|A Chain A, Crystal Structure Of The Gst-Like Domain Of Elongation
           Factor 1-Gamma From Saccharomyces Cerevisiae
          Length = 219

 Score = 27.3 bits (59), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 11  EQGFGAYWRGNMANVIRYFPTQALNFAFKDKYK 43
           E  FG  WR     ++R+F T   +   KD+YK
Sbjct: 174 ESLFGTEWRAQHPAIVRWFNTVRASPFLKDEYK 206


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.142    0.448 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,547,550
Number of Sequences: 62578
Number of extensions: 258685
Number of successful extensions: 580
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 571
Number of HSP's gapped (non-prelim): 12
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)