RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14348
(225 letters)
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 326 bits (838), Expect = e-114
Identities = 166/212 (78%), Positives = 186/212 (87%), Gaps = 1/212 (0%)
Query: 1 MVDCFVRIPKEQGFGAYWRGNMANVIRYFPTQALNFAFKDKYKQIFLGGIDK-SQFWAYF 59
++DC VRIPKEQGF ++WRGN+ANVIRYFPTQALNFAFKDKYKQIFLGG+D+ QFW YF
Sbjct: 53 IIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYF 112
Query: 60 AGNLASGGAAGATSLCFVYPLDFARTRLGADVGKTGGAREFTGLGDCLTKIFKSDGIVGL 119
AGNLASGGAAGATSLCFVYPLDFARTRL ADVGK REFTGLG+C+TKIFKSDG+ GL
Sbjct: 113 AGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGL 172
Query: 120 YRGFGVSVQGIIIYRASYFGFFDTAKGMLPDPKNAGFLVSWGIAQVVTTVAGIVSYPFDT 179
Y+GF VSVQGIIIYRA+YFG +DTAKGMLPDPKN +VSW IAQ VT VAG+VSYPFDT
Sbjct: 173 YQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDT 232
Query: 180 VRRRLMMQSGRGKSEIVYKGTLHCWAVIAKTE 211
VRRR+MMQSGR ++I+Y GT+ CW IAK E
Sbjct: 233 VRRRMMMQSGRKGADIMYTGTVDCWRKIAKDE 264
Score = 111 bits (281), Expect = 5e-30
Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 14/164 (8%)
Query: 59 FAGNLASGGAAGATSLCFVYPLDFARTRL--GADVGKTGGAREFTGLGDCLTKIFKSDGI 116
F + +GG A A S V P++ + L + +++ G+ DC+ +I K G
Sbjct: 7 FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGF 66
Query: 117 VGLYRGFGVSVQGIIIYRASYFGFFDTAKGMLPDPKN---------AGFLVSWGIAQVVT 167
+ +RG +V +A F F D K + + AG L S G A +
Sbjct: 67 LSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATS 126
Query: 168 TVAGIVSYPFDTVRRRLMMQSGRGKSEIVYKGTLHCWAVIAKTE 211
YP D R RL G+G ++ + G +C I K++
Sbjct: 127 L---CFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSD 167
Score = 99.3 bits (248), Expect = 3e-25
Identities = 31/148 (20%), Positives = 52/148 (35%), Gaps = 6/148 (4%)
Query: 1 MVDCFVRIPKEQGFGAYWRGNMANVIRYFPTQALNFAFKDKYKQIFLGGIDKSQFWAYFA 60
+ +C +I K G ++G +V +A F D K + +
Sbjct: 156 LGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIV---- 211
Query: 61 GNLASGGAAGATSLCFVYPLDFARTRLGADVGKTGGAREFTGLGDCLTKIFKSDGIVGLY 120
+ A + YP D R R+ G+ G +TG DC KI K +G +
Sbjct: 212 -SWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFF 270
Query: 121 RGFGVSVQGIIIYRASYFGFFDTAKGML 148
+G +V + A +D K +
Sbjct: 271 KGAWSNVLR-GMGGAFVLVLYDEIKKFV 297
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 115 bits (290), Expect = 3e-31
Identities = 44/216 (20%), Positives = 80/216 (37%), Gaps = 18/216 (8%)
Query: 1 MVDCFVRIPKEQGFGAYWRGNMANVIRYFPTQALNFAFKDKYKQIFLGGIDKSQFWAYFA 60
++ + + + +G + + G +A + R ++ D KQ + G + + +
Sbjct: 50 VLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGS--- 106
Query: 61 GNLASGGAAGATSLCFVYPLDFARTRLGADVGKTGGAREFTGLGDCLTKIFKSDGIVGLY 120
L +G GA ++ P D + R A + GG R + + I + +GI GL+
Sbjct: 107 -RLLAGSTTGALAVAVAQPTDVVKVRFQAQ-ARAGGGRRYQSTVEAYKTIAREEGIRGLW 164
Query: 121 RGFGVSVQGIIIYRASYFGFFDTAKGMLPDPKNAG-----FLVSWGIAQVVTTVAGIVSY 175
+G +V I + +D K L S A TTV ++
Sbjct: 165 KGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTV---IAS 221
Query: 176 PFDTVRRRLMMQSGRGKSEIVYKGTLHCWAVIAKTE 211
P D V+ R M + Y HC + + E
Sbjct: 222 PVDVVKTRYMNSALGQ-----YHSAGHCALTMLRKE 252
Score = 97.8 bits (244), Expect = 1e-24
Identities = 33/156 (21%), Positives = 63/156 (40%), Gaps = 7/156 (4%)
Query: 62 NLASGGAAGATSLCFVYPLDFARTRL-----GADVGKTGGAREFTGLGDCLTKIFKSDGI 116
G A + +PLD A+ RL + +T + ++ G+ + + +++G
Sbjct: 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGP 63
Query: 117 VGLYRGFGVSVQGIIIYRASYFGFFDTAKGML-PDPKNAGFLVSWGIAQVVTTVAGIVSY 175
LY G +Q + + + G +D+ K ++AG +A V+
Sbjct: 64 RSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQ 123
Query: 176 PFDTVRRRLMMQSGRGKSEIVYKGTLHCWAVIAKTE 211
P D V+ R Q+ G Y+ T+ + IA+ E
Sbjct: 124 PTDVVKVRFQAQARAGGGR-RYQSTVEAYKTIAREE 158
Score = 82.0 bits (203), Expect = 7e-19
Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 10/125 (8%)
Query: 1 MVDCFVRIPKEQGFGAYWRGNMANVIRYFPTQALNFAFKDKYKQIFLG-GIDKSQFWAYF 59
V+ + I +E+G W+G NV R D K L + +F
Sbjct: 147 TVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHF 206
Query: 60 AGNLASGGAAGATSLCFVYPLDFARTRLGADVGKTGGAREFTGLGDCLTKIFKSDGIVGL 119
+G + P+D +TR ++ G C + + +G
Sbjct: 207 TSAFGAGFCTTVIAS----PVDVVKTRYMNS-----ALGQYHSAGHCALTMLRKEGPRAF 257
Query: 120 YRGFG 124
Y+GF
Sbjct: 258 YKGFM 262
Score = 41.5 bits (98), Expect = 1e-04
Identities = 8/47 (17%), Positives = 23/47 (48%)
Query: 1 MVDCFVRIPKEQGFGAYWRGNMANVIRYFPTQALNFAFKDKYKQIFL 47
C + + +++G A+++G M + +R + F ++ K+ +
Sbjct: 241 AGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead
transcription factors, FOXM1, W helix; HET: DNA; 2.21A
{Homo sapiens}
Length = 142
Score = 31.0 bits (70), Expect = 0.14
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 3 DCFVRIPKEQGFGAYWR 19
D FVR G ++W
Sbjct: 75 DMFVRETSANGKVSFWT 91
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.19
Identities = 36/163 (22%), Positives = 48/163 (29%), Gaps = 59/163 (36%)
Query: 31 TQ-ALNFA-----FKD-KYKQIFLGGIDKSQFWAYFAGNLASGG-----AAGATSLCF-- 76
TQ AL F+D K K G I A FAG+ S G A+ A +
Sbjct: 1732 TQPAL-TLMEKAAFEDLKSK----GLIPAD---ATFAGH--SLGEYAALASLADVMSIES 1781
Query: 77 VYPLDFARTRLGAD-VGKTGGAREFTGLGDCLTKIFKSDGIVGLYRGFGVSVQGIIIYRA 135
+ + F R V + R G+ + G V F ++ R
Sbjct: 1782 LVEVVFYRGMTMQVAVPRDELGRSNYGMIAI------NPGRVAA--SFSQEALQYVVERV 1833
Query: 136 SYFGFFDTAKGMLPDPKNAGFLVSWGIA-------QVVTTVAG 171
K G+LV I Q V AG
Sbjct: 1834 G---------------KRTGWLVE--IVNYNVENQQYV--AAG 1857
Score = 28.5 bits (63), Expect = 2.2
Identities = 22/128 (17%), Positives = 39/128 (30%), Gaps = 51/128 (39%)
Query: 141 FDTAKGMLPDPKN---AGFLVS---------WGIAQVVTTVAG--------IVSY----P 176
F + KG+L + A L+ G+ T AG + S
Sbjct: 1719 FRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMS 1778
Query: 177 FDT----VRRR-LMMQS-------GRGKSEIVYKGTLHCWAV----IAKT---EEQSNFS 217
++ V R + MQ GR ++ A+ +A + E
Sbjct: 1779 IESLVEVVFYRGMTMQVAVPRDELGRSNYGMI--------AINPGRVAASFSQEALQYVV 1830
Query: 218 PEIEEKTG 225
+ ++TG
Sbjct: 1831 ERVGKRTG 1838
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA
binding domain; forkhead BOX, winged helix; 1.87A {Homo
sapiens} SCOP: a.4.5.14
Length = 85
Score = 28.8 bits (65), Expect = 0.38
Identities = 4/17 (23%), Positives = 9/17 (52%), Gaps = 1/17 (5%)
Query: 3 DCFVRIPKEQ-GFGAYW 18
F+++ E G ++W
Sbjct: 66 SKFIKVHNEATGKSSWW 82
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.43
Identities = 27/182 (14%), Positives = 56/182 (30%), Gaps = 61/182 (33%)
Query: 24 NVIRYFPTQALNFAFKDKYKQIFLG----GIDKSQFWAYFAGNLASGGAAGATSLCFVYP 79
N+ + F + L + D+Y +G I+ + F V+
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM---------------VF- 497
Query: 80 LDFARTR-LGADVGKTGGAREFTG-LGDCLTKIFKSDGIVGLYRGFGVSVQGIIIYRASY 137
LDF R L + A +G + + L ++ Y+ + I Y
Sbjct: 498 LDF---RFLEQKIRHDSTAWNASGSILNTLQQLKF-------YKPY------ICDNDPKY 541
Query: 138 FGFFDTAKGMLPDPKNAGFLVSWGIAQVVTTVAGIVSYPF-DTVRRRLMMQSGRGKSEIV 196
+ ++ + FL ++ + D +R LM + E +
Sbjct: 542 -------ERLVNAILD--FLPKIE--------ENLICSKYTDLLRIALM-----AEDEAI 579
Query: 197 YK 198
++
Sbjct: 580 FE 581
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP;
1.87A {Homo sapiens} PDB: 3co6_C*
Length = 110
Score = 29.0 bits (65), Expect = 0.43
Identities = 4/18 (22%), Positives = 9/18 (50%), Gaps = 1/18 (5%)
Query: 3 DCFVRIPKEQ-GFGAYWR 19
F+++ E G ++W
Sbjct: 85 SKFIKVHNEATGKSSWWM 102
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer,
monomer, winged-helix, magnesium, transcription/DNA
complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB:
2as5_F 2kiu_A 3qrf_F
Length = 93
Score = 28.4 bits (64), Expect = 0.58
Identities = 7/17 (41%), Positives = 8/17 (47%), Gaps = 2/17 (11%)
Query: 3 DCFVRIPKEQGFGAYWR 19
CFVR+ GA W
Sbjct: 59 KCFVRVEN--VKGAVWT 73
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 29.6 bits (67), Expect = 0.89
Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 176 PFDTVRRRLM--MQSGRGKSEIVYKGTLHCWAVIAKTEEQSNFSPEIEEK 223
PFD V ++++ ++S +G+ KG V+ EE E+++
Sbjct: 450 PFDPVSKKVVAVVESPQGERITCVKGAPL--FVLKTVEEDHPIPEEVDQA 497
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR
{Rattus norvegicus} SCOP: a.4.5.14
Length = 109
Score = 28.1 bits (63), Expect = 0.90
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 3/20 (15%)
Query: 3 DCFVRIPKEQ---GFGAYWR 19
DCFV+IP+E G G YW
Sbjct: 59 DCFVKIPREPGNPGKGNYWT 78
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP:
a.4.5.14
Length = 150
Score = 28.4 bits (63), Expect = 1.0
Identities = 4/18 (22%), Positives = 9/18 (50%), Gaps = 1/18 (5%)
Query: 3 DCFVRIPKEQ-GFGAYWR 19
F+++ E G ++W
Sbjct: 101 SKFIKVHNEATGKSSWWM 118
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis,
winged helix protein, protein/DNA complex; HET: DNA;
NMR {Rattus norvegicus} SCOP: a.4.5.14
Length = 97
Score = 27.6 bits (62), Expect = 1.2
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 3/20 (15%)
Query: 3 DCFVRIPKEQ---GFGAYWR 19
DCFV+IP+E G G YW
Sbjct: 58 DCFVKIPREPGNPGKGNYWT 77
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding
domain, forkhead transcription factors, interleukin
enhancer binding factor; 2.4A {Homo sapiens} SCOP:
a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Length = 111
Score = 27.7 bits (62), Expect = 1.3
Identities = 7/20 (35%), Positives = 13/20 (65%), Gaps = 3/20 (15%)
Query: 3 DCFVRIPKEQ---GFGAYWR 19
F+++P+ Q G G++WR
Sbjct: 72 RYFIKVPRSQEEPGKGSFWR 91
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex,
double helix, transcription-DNA complex; HET: DNA;
2.50A {Homo sapiens} PDB: 1d5v_A
Length = 102
Score = 27.6 bits (62), Expect = 1.4
Identities = 8/20 (40%), Positives = 12/20 (60%), Gaps = 3/20 (15%)
Query: 3 DCFVRIPKEQ---GFGAYWR 19
DCFV++ + G G+YW
Sbjct: 59 DCFVKVARSPDKPGKGSYWA 78
>3coa_C Forkhead box protein O1; winged helix, forkhead domain,
chromosomal rearrangement; HET: DNA; 2.20A {Homo
sapiens} PDB: 3co7_C* 2k86_A 2uzk_A
Length = 117
Score = 27.5 bits (61), Expect = 1.6
Identities = 5/18 (27%), Positives = 9/18 (50%), Gaps = 1/18 (5%)
Query: 3 DCFVRIPKEQ-GFGAYWR 19
F+R+ E G ++W
Sbjct: 72 SKFIRVQNEGTGKSSWWM 89
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged;
winged helix protein, structure, transcription; NMR
{Rattus norvegicus} SCOP: a.4.5.14
Length = 100
Score = 26.1 bits (58), Expect = 4.3
Identities = 7/21 (33%), Positives = 11/21 (52%), Gaps = 4/21 (19%)
Query: 3 DCFVRIPKEQ----GFGAYWR 19
DCFV++ ++ G YW
Sbjct: 58 DCFVKVLRDPSRPWGKDNYWM 78
>1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A
{Galactomyces geotrichum} SCOP: c.69.1.17
Length = 544
Score = 27.0 bits (60), Expect = 5.5
Identities = 10/33 (30%), Positives = 11/33 (33%), Gaps = 4/33 (12%)
Query: 125 VSVQGIIIYRASYFGFFDTAKGMLPDPKNAGFL 157
VS+ YR FGF NAG
Sbjct: 160 VSIN----YRTGPFGFLGGDAITAEGNTNAGLH 188
>2rdg_A Superantigen-like protein 11; OB fold, beta grAsp,
protein-carbohydrate complex, toxin; HET: SIA NDG GAL
FUC CIT; 1.60A {Staphylococcus aureus} PDB: 2rdh_A
3o13_A
Length = 196
Score = 26.4 bits (58), Expect = 6.2
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 21 NMANVIRYFPTQALNFAFKDKYKQIFLGGIDKSQF 55
++ N+ Y + F + + L G DK +
Sbjct: 23 DLRNLSGYREGNTVTFINHYQQTDVKLEGKDKDKI 57
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.141 0.441
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,601,032
Number of extensions: 217998
Number of successful extensions: 521
Number of sequences better than 10.0: 1
Number of HSP's gapped: 504
Number of HSP's successfully gapped: 37
Length of query: 225
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 135
Effective length of database: 4,188,903
Effective search space: 565501905
Effective search space used: 565501905
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.4 bits)