RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14348
         (225 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
           heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score =  107 bits (267), Expect = 9e-29
 Identities = 166/212 (78%), Positives = 186/212 (87%), Gaps = 1/212 (0%)

Query: 1   MVDCFVRIPKEQGFGAYWRGNMANVIRYFPTQALNFAFKDKYKQIFLGGIDK-SQFWAYF 59
           ++DC VRIPKEQGF ++WRGN+ANVIRYFPTQALNFAFKDKYKQIFLGG+D+  QFW YF
Sbjct: 52  IIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYF 111

Query: 60  AGNLASGGAAGATSLCFVYPLDFARTRLGADVGKTGGAREFTGLGDCLTKIFKSDGIVGL 119
           AGNLASGGAAGATSLCFVYPLDFARTRL ADVGK    REFTGLG+C+TKIFKSDG+ GL
Sbjct: 112 AGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGL 171

Query: 120 YRGFGVSVQGIIIYRASYFGFFDTAKGMLPDPKNAGFLVSWGIAQVVTTVAGIVSYPFDT 179
           Y+GF VSVQGIIIYRA+YFG +DTAKGMLPDPKN   +VSW IAQ VT VAG+VSYPFDT
Sbjct: 172 YQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDT 231

Query: 180 VRRRLMMQSGRGKSEIVYKGTLHCWAVIAKTE 211
           VRRR+MMQSGR  ++I+Y GT+ CW  IAK E
Sbjct: 232 VRRRMMMQSGRKGADIMYTGTVDCWRKIAKDE 263



 Score = 58.6 bits (140), Expect = 5e-11
 Identities = 36/159 (22%), Positives = 60/159 (37%), Gaps = 8/159 (5%)

Query: 59  FAGNLASGGAAGATSLCFVYPLDFARTRLGADVG--KTGGAREFTGLGDCLTKIFKSDGI 116
           F  +  +GG A A S   V P++  +  L       +    +++ G+ DC+ +I K  G 
Sbjct: 6   FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGF 65

Query: 117 VGLYRGFGVSVQGIIIYRASYFGFFDTAKGML------PDPKNAGFLVSWGIAQVVTTVA 170
           +  +RG   +V      +A  F F D  K +              F  +          +
Sbjct: 66  LSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATS 125

Query: 171 GIVSYPFDTVRRRLMMQSGRGKSEIVYKGTLHCWAVIAK 209
               YP D  R RL    G+G ++  + G  +C   I K
Sbjct: 126 LCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFK 164



 Score = 56.3 bits (134), Expect = 4e-10
 Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 5/127 (3%)

Query: 1   MVDCFVRIPKEQGFGAYWRGNMANVIRYFPTQALNFAFKDKYKQIFLGGIDKSQFWAYFA 60
           + +C  +I K  G    ++G   +V      +A  F   D  K +            +  
Sbjct: 155 LGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGML-----PDPKNVHII 209

Query: 61  GNLASGGAAGATSLCFVYPLDFARTRLGADVGKTGGAREFTGLGDCLTKIFKSDGIVGLY 120
            +        A +    YP D  R R+    G+ G    +TG  DC  KI K +G    +
Sbjct: 210 VSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFF 269

Query: 121 RGFGVSV 127
           +G   +V
Sbjct: 270 KGAWSNV 276



 Score = 33.9 bits (76), Expect = 0.012
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 157 LVSWGIAQVVTTVAGIVSYPFDTVRRRLMMQ--SGRGKSEIVYKGTLHCWAVIAKTE 211
            ++ G+A  ++        P + V+  L +Q  S +  +E  YKG + C   I K +
Sbjct: 10  FLAGGVAAAISKT---AVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQ 63


>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA,
           nucleotide-binding domains {Mycobacterium tuberculosis
           [TaxId: 1773]}
          Length = 219

 Score = 27.3 bits (60), Expect = 1.3
 Identities = 9/35 (25%), Positives = 14/35 (40%)

Query: 92  GKTGGAREFTGLGDCLTKIFKSDGIVGLYRGFGVS 126
           G  G +R +  LGD L + F    +  L     + 
Sbjct: 179 GDPGESRFYLSLGDELMRRFNGAALETLLTRLNLP 213


>d1v1oa1 b.40.2.2 (A:18-108) Exotoxin 1 (SET1, Superantigen-like
          protein 7) {Staphylococcus aureus [TaxId: 1280]}
          Length = 91

 Score = 24.3 bits (53), Expect = 5.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 28 YFPTQALNFAFKDKYKQIFLGGIDKSQF 55
          Y  +  + F  KD+  Q+FL G DK Q+
Sbjct: 32 YNGSNVVRFNPKDQNHQLFLLGKDKEQY 59


>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 98

 Score = 24.4 bits (53), Expect = 5.8
 Identities = 7/20 (35%), Positives = 13/20 (65%), Gaps = 3/20 (15%)

Query: 3  DCFVRIPKEQ---GFGAYWR 19
            F+++P+ Q   G G++WR
Sbjct: 59 RYFIKVPRSQEEPGKGSFWR 78


>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11
          (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 94

 Score = 24.0 bits (52), Expect = 8.0
 Identities = 8/20 (40%), Positives = 14/20 (70%), Gaps = 3/20 (15%)

Query: 3  DCFVRIPKEQ---GFGAYWR 19
          +CFV++P++    G G+YW 
Sbjct: 60 ECFVKVPRDDKKPGKGSYWT 79


>d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease,
           catalytic domain {Helicobacter pylori [TaxId: 210]}
          Length = 389

 Score = 24.7 bits (54), Expect = 10.0
 Identities = 5/17 (29%), Positives = 8/17 (47%)

Query: 61  GNLASGGAAGATSLCFV 77
           G +  G A    ++ FV
Sbjct: 298 GKVHHGKAKYDANITFV 314


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.141    0.441 

Gapped
Lambda     K      H
   0.267   0.0658    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 873,262
Number of extensions: 39867
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 12
Length of query: 225
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 143
Effective length of database: 1,281,736
Effective search space: 183288248
Effective search space used: 183288248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (23.6 bits)