BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14349
(91 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX
WITH Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 122 bits (305), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 70/84 (83%), Gaps = 1/84 (1%)
Query: 7 FVHDFVVGGIAATISKTTVAPIERVKILLQIQDSSKNIAA-RRYRGIGDCFVRIHKEQGT 65
F+ DF+ GG+AA ISKT VAPIERVK+LLQ+Q +SK I+A ++Y+GI DC VRI KEQG
Sbjct: 7 FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGF 66
Query: 66 LSFWRGNSANILRYFPAQALNFEY 89
LSFWRGN AN++RYFP QALNF +
Sbjct: 67 LSFWRGNLANVIRYFPTQALNFAF 90
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 8 VHDFVVGGIAATISKTTVA-----PIERVKILLQIQDSSKNIAARRYRGIGDCFVRIHKE 62
VH V IA T+ T VA P + V+ + +Q K A Y G DC+ +I K+
Sbjct: 207 VHIIVSWMIAQTV--TAVAGLVSYPFDTVRRRMMMQSGRKG-ADIMYTGTVDCWRKIAKD 263
Query: 63 QGTLSFWRGNSANILR 78
+G +F++G +N+LR
Sbjct: 264 EGPKAFFKGAWSNVLR 279
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 11 FVVGGIAATISKTTVAPIERVKILLQIQDSSKNI----AARRYRGIGDCFVRIHKEQGTL 66
F+ G AA I+ P++ K+ LQIQ S+ + A+ +YRG+ + + + +G
Sbjct: 5 FLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPR 64
Query: 67 SFWRGNSANILR 78
S + G A + R
Sbjct: 65 SLYNGLVAGLQR 76
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 11 FVVGGIAATISKTTVAPIERVKILLQIQDSSKNIAARRYRGIGDCFVRIHKEQGTLSFWR 70
+ G ++ P + VK+ Q Q ++ RRY+ + + I +E+G W+
Sbjct: 108 LLAGSTTGALAVAVAQPTDVVKVRFQAQ--ARAGGGRRYQSTVEAYKTIAREEGIRGLWK 165
Query: 71 GNSANILR 78
G S N+ R
Sbjct: 166 GTSPNVAR 173
>pdb|2HRG|A Chain A, Crystal Structure Of Blue Laccase From Trametes Trogii
Complexed With P-Methylbenzoate
pdb|2HRH|A Chain A, Crystal Strucure Of Blue Laccase From Trametes Trogii
Length = 496
Score = 28.9 bits (63), Expect = 0.69, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 24 TVAPIERVKILLQIQDSSKNIAARRY-------RGIGDCFVRIHKEQGTLSFWRGNSANI 76
TV + V + Q DS + AA+RY + +G+ ++R GT +F G ++ I
Sbjct: 218 TVIEADSVNLKPQTVDSIQIFAAQRYSFVLNADQDVGNYWIRALPNSGTRNFDGGVNSAI 277
Query: 77 LRY 79
LRY
Sbjct: 278 LRY 280
>pdb|2FGH|A Chain A, Atp Bound Gelsolin
pdb|2FGH|B Chain B, Atp Bound Gelsolin
Length = 731
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 54 DCFVRIHKEQGTLSFWRGNSANI 76
DCF+ H + G + W+G AN+
Sbjct: 279 DCFILDHGKDGKIFVWKGKQANM 301
>pdb|1D0N|A Chain A, The Crystal Structure Of Calcium-Free Equine Plasma
Gelsolin.
pdb|1D0N|B Chain B, The Crystal Structure Of Calcium-Free Equine Plasma
Gelsolin
Length = 729
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 54 DCFVRIHKEQGTLSFWRGNSANI 76
DCF+ H + G + W+G AN+
Sbjct: 277 DCFILDHGKDGKIFVWKGKQANM 299
>pdb|1RGI|G Chain G, Crystal Structure Of Gelsolin Domains G1-G3 Bound To Actin
Length = 346
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 54 DCFVRIHKEQGTLSFWRGNSANI 76
DCF+ H + G + W+G AN+
Sbjct: 278 DCFILDHGKDGKIFVWKGKQANM 300
>pdb|3FFN|A Chain A, Crystal Structure Of Calcium-Free Human Gelsolin
pdb|3FFN|B Chain B, Crystal Structure Of Calcium-Free Human Gelsolin
Length = 782
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 54 DCFVRIHKEQGTLSFWRGNSAN 75
DCF+ H + G + W+G AN
Sbjct: 330 DCFILDHGKDGKIFVWKGKQAN 351
>pdb|1GYC|A Chain A, Crystal Structure Determination At Room Temperature Of A
Laccase From Trametes Versicolor In Its Oxidised Form
Containing A Full Complement Of Copper Ions
Length = 499
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Query: 39 DSSKNIAARRY-------RGIGDCFVRIHKEQGTLSFWRGNSANILRY 79
DS + AA+RY + +G+ ++R + GT+ F G ++ ILRY
Sbjct: 234 DSIQIFAAQRYSFVLNANQTVGNYWIRANPNFGTVGFAGGINSAILRY 281
>pdb|3FFK|A Chain A, Crystal Structure Of Human Gelsolin Domains G1-G3 Bound To
Actin
pdb|3FFK|D Chain D, Crystal Structure Of Human Gelsolin Domains G1-G3 Bound To
Actin
Length = 377
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 54 DCFVRIHKEQGTLSFWRGNSAN 75
DCF+ H + G + W+G AN
Sbjct: 281 DCFILDHGKDGKIFVWKGKQAN 302
>pdb|4A2F|A Chain A, Coriolopsis Gallica Laccase Collected At 12.65 Kev
Length = 497
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 24 TVAPIERVKILLQIQDSSKNIAARRY-------RGIGDCFVRIHKEQGTLSFWRGNSANI 76
TV + V + DS + AA+RY + + + ++R GT +F G ++ I
Sbjct: 218 TVIEADSVNLKPHTVDSLQIFAAQRYSFVLNADQDVDNYWIRALPNSGTQNFAGGTNSAI 277
Query: 77 LRY 79
LRY
Sbjct: 278 LRY 280
>pdb|4A2D|A Chain A, Coriolopsis Gallica Laccase T2 Copper Depleted At Ph 4.5
pdb|4A2E|A Chain A, Crystal Structure Of A Coriolopsis Gallica Laccase At 1.7
A Resolution Ph 5.5
pdb|4A2H|A Chain A, Crystal Structure Of Laccase From Coriolopsis Gallica Ph
7.0
pdb|4A2G|A Chain A, Coriolopsis Gallica Laccase Collected At 8.98 Kev
Length = 496
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 24 TVAPIERVKILLQIQDSSKNIAARRY-------RGIGDCFVRIHKEQGTLSFWRGNSANI 76
TV + V + DS + AA+RY + + + ++R GT +F G ++ I
Sbjct: 218 TVIEADSVNLKPHTVDSLQIFAAQRYSFVLNADQDVDNYWIRALPNSGTQNFAGGTNSAI 277
Query: 77 LRY 79
LRY
Sbjct: 278 LRY 280
>pdb|2HZH|A Chain A, Crystal Structure Of Laccase From Coriolus Zonatus At 2.6
A Resolution
Length = 499
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Query: 45 AARRY-------RGIGDCFVRIHKEQGTLSFWRGNSANILRYFPAQA 84
AA+RY + + + ++R + QG + F G ++ ILRY A A
Sbjct: 240 AAQRYSFILNANQAVNNYWIRANPNQGNVGFTNGINSAILRYSGAAA 286
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,508,183
Number of Sequences: 62578
Number of extensions: 76454
Number of successful extensions: 193
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 183
Number of HSP's gapped (non-prelim): 14
length of query: 91
length of database: 14,973,337
effective HSP length: 58
effective length of query: 33
effective length of database: 11,343,813
effective search space: 374345829
effective search space used: 374345829
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)