Query psy14349
Match_columns 91
No_of_seqs 175 out of 1449
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 17:36:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14349.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14349hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 99.9 4E-24 1.4E-28 136.2 8.7 90 2-91 2-92 (297)
2 2lck_A Mitochondrial uncouplin 99.9 4.4E-24 1.5E-28 136.5 8.0 82 4-91 199-280 (303)
3 1okc_A ADP, ATP carrier protei 99.9 2.2E-23 7.4E-28 132.8 8.4 84 7-91 112-195 (297)
4 2lck_A Mitochondrial uncouplin 99.9 2.3E-23 7.7E-28 133.2 8.3 86 4-91 101-186 (303)
5 2acm_A Mucin-1; auto-catalytic 68.6 0.92 3.1E-05 22.1 -0.2 20 50-69 40-59 (66)
6 3vjj_A P9-1; 3.00A {Rice black 54.4 6.9 0.00024 25.1 1.9 53 20-86 274-326 (368)
7 3i71_A Ethanolamine utilizatio 52.1 9.3 0.00032 18.5 1.7 26 11-36 15-40 (68)
8 3f2e_A SIRV coat protein; four 42.4 17 0.00057 18.6 1.9 34 47-80 6-43 (100)
9 2bnk_A Early protein GP16.7; D 39.9 28 0.00095 16.7 2.3 45 24-72 21-65 (67)
10 2a3d_A Protein (de novo three- 34.7 41 0.0014 16.0 3.9 16 26-41 9-24 (73)
11 2l5r_A Antimicrobial peptide a 28.0 26 0.0009 13.4 0.9 19 57-76 3-21 (26)
12 1yro_A Alpha-lactalbumin; Arg2 27.4 42 0.0014 18.5 2.1 20 52-72 88-107 (123)
13 1hml_A Alpha-lactalbumin; calc 25.7 46 0.0016 18.9 2.1 20 52-72 107-126 (142)
14 2fbd_A Lysozyme 1; digestive l 25.3 49 0.0017 18.2 2.1 20 52-72 89-108 (122)
15 1iiz_A Lysozyme; hydrolase; 2. 25.2 44 0.0015 18.4 1.9 16 52-67 87-102 (120)
16 1b9o_A Protein (alpha-lactalbu 24.7 44 0.0015 18.5 1.8 16 52-67 88-103 (123)
17 2z5i_I TM, tropomyosin alpha-1 23.9 29 0.00098 15.3 0.8 13 27-39 4-16 (40)
18 2b2h_A AMT-1, ammonium transpo 22.7 1.2E+02 0.0041 20.3 3.9 33 5-41 267-299 (399)
19 2da7_A Zinc finger homeobox pr 22.3 85 0.0029 15.6 2.5 20 20-39 38-57 (71)
20 3c2b_A Transcriptional regulat 21.0 27 0.00092 19.9 0.5 18 50-67 18-35 (221)
21 3b9w_A Ammonium transporter fa 21.0 1.4E+02 0.0049 19.9 4.0 36 5-40 257-293 (407)
22 3hd6_A Ammonium transporter RH 20.1 1.9E+02 0.0064 20.0 4.5 37 5-41 306-343 (490)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.91 E-value=4e-24 Score=136.18 Aligned_cols=90 Identities=62% Similarity=1.037 Sum_probs=79.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhhccHHHHHHHHHhcCCCcc-ccccCCCCHHHHHHHHHHhhchhhcccccHHHHHHHh
Q psy14349 2 GGQSDFVHDFVVGGIAATISKTTVAPIERVKILLQIQDSSKN-IAARRYRGIGDCFVRIHKEQGTLSFWRGNSANILRYF 80 (91)
Q Consensus 2 ~~~~~~~~~~~ag~~ag~~~~~~~~P~d~ik~r~q~~~~~~~-~~~~~~~~~~~~~~~i~~~~G~~g~y~G~~~~~~~~~ 80 (91)
|++++.+..+++|++||+++.++++|+|+||+|+|.+..... ....+|+++++++++|+++||++|||||+.+++++.+
T Consensus 2 ~~~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~ 81 (297)
T 1okc_A 2 DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYF 81 (297)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHH
Confidence 345678899999999999999999999999999999864211 1235789999999999999999999999999999999
Q ss_pred hhhhhhhhccC
Q psy14349 81 PAQALNFEYWN 91 (91)
Q Consensus 81 ~~~~i~~~~ye 91 (91)
|.++++|.+||
T Consensus 82 ~~~~~~f~~ye 92 (297)
T 1okc_A 82 PTQALNFAFKD 92 (297)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.90 E-value=4.4e-24 Score=136.45 Aligned_cols=82 Identities=18% Similarity=0.316 Sum_probs=76.2
Q ss_pred CchhHHHHHHHHHHHHHHHHhhccHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHhhchhhcccccHHHHHHHhhhh
Q psy14349 4 QSDFVHDFVVGGIAATISKTTVAPIERVKILLQIQDSSKNIAARRYRGIGDCFVRIHKEQGTLSFWRGNSANILRYFPAQ 83 (91)
Q Consensus 4 ~~~~~~~~~ag~~ag~~~~~~~~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~g~y~G~~~~~~~~~~~~ 83 (91)
+.+.+..+++|++||++++++++|+|+||+|+|.+.. ..|.++++|+++|+++||++|||||+.++++|.+|.+
T Consensus 199 ~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~------~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~ 272 (303)
T 2lck_A 199 TDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL------GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWN 272 (303)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS------SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc------cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHH
Confidence 3456788999999999999999999999999999864 2589999999999999999999999999999999999
Q ss_pred hhhhhccC
Q psy14349 84 ALNFEYWN 91 (91)
Q Consensus 84 ~i~~~~ye 91 (91)
+++|.+||
T Consensus 273 ~i~f~~ye 280 (303)
T 2lck_A 273 VVMFVTYE 280 (303)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999997
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.89 E-value=2.2e-23 Score=132.80 Aligned_cols=84 Identities=23% Similarity=0.443 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHHHHHHhhccHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHhhchhhcccccHHHHHHHhhhhhhh
Q psy14349 7 FVHDFVVGGIAATISKTTVAPIERVKILLQIQDSSKNIAARRYRGIGDCFVRIHKEQGTLSFWRGNSANILRYFPAQALN 86 (91)
Q Consensus 7 ~~~~~~ag~~ag~~~~~~~~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~g~y~G~~~~~~~~~~~~~i~ 86 (91)
.+..+++|++||+++.++++|+|+||+|+|++.... ....+|.++++++++|+++||++|||||+.+++++.+|.++++
T Consensus 112 ~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~-~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~ 190 (297)
T 1okc_A 112 FAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG-AAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAY 190 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS-TTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC-CcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHH
Confidence 467899999999999999999999999999986431 1235789999999999999999999999999999999999999
Q ss_pred hhccC
Q psy14349 87 FEYWN 91 (91)
Q Consensus 87 ~~~ye 91 (91)
|.+||
T Consensus 191 f~~ye 195 (297)
T 1okc_A 191 FGVYD 195 (297)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99986
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.89 E-value=2.3e-23 Score=133.15 Aligned_cols=86 Identities=20% Similarity=0.434 Sum_probs=78.1
Q ss_pred CchhHHHHHHHHHHHHHHHHhhccHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHhhchhhcccccHHHHHHHhhhh
Q psy14349 4 QSDFVHDFVVGGIAATISKTTVAPIERVKILLQIQDSSKNIAARRYRGIGDCFVRIHKEQGTLSFWRGNSANILRYFPAQ 83 (91)
Q Consensus 4 ~~~~~~~~~ag~~ag~~~~~~~~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~g~y~G~~~~~~~~~~~~ 83 (91)
..+.+..+++|++||+++.++++|+|+||+|+|.+.... ...+|.++++++++|+++||++|||||+.+++++.+|.+
T Consensus 101 ~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~--~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 178 (303)
T 2lck_A 101 HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAG--GGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVN 178 (303)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCC--CSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccC--CCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHH
Confidence 356788999999999999999999999999999987531 235789999999999999999999999999999999999
Q ss_pred hhhhhccC
Q psy14349 84 ALNFEYWN 91 (91)
Q Consensus 84 ~i~~~~ye 91 (91)
+++|.+||
T Consensus 179 ~i~f~~ye 186 (303)
T 2lck_A 179 CAELVTYD 186 (303)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999986
No 5
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=68.64 E-value=0.92 Score=22.06 Aligned_cols=20 Identities=35% Similarity=0.575 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHHhhchhhcc
Q psy14349 50 RGIGDCFVRIHKEQGTLSFW 69 (91)
Q Consensus 50 ~~~~~~~~~i~~~~G~~g~y 69 (91)
+++.+.+.+|++++++.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 46788899999999999875
No 6
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=54.39 E-value=6.9 Score=25.11 Aligned_cols=53 Identities=15% Similarity=0.134 Sum_probs=28.4
Q ss_pred HHHHhhccHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHhhchhhcccccHHHHHHHhhhhhhh
Q psy14349 20 ISKTTVAPIERVKILLQIQDSSKNIAARRYRGIGDCFVRIHKEQGTLSFWRGNSANILRYFPAQALN 86 (91)
Q Consensus 20 ~~~~~~~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~g~y~G~~~~~~~~~~~~~i~ 86 (91)
++++--+|+|.+|..+++.-. ....+++.++++| +|+-+..+-++..+.+.+.
T Consensus 274 LaTFdnypfdllRfqL~Slis-----------tp~~I~e~i~K~G---LFk~it~~~~rg~~~q~vl 326 (368)
T 3vjj_A 274 LATFDNYPFDLLRFQLSSLIS-----------TPALIREKIAKEG---LFKIITSNTLRGASRQTVL 326 (368)
T ss_dssp HHHCTTCBHHHHHHHCSSCCC-----------CCHHHHHHHHHSC---SEEECC----------CEE
T ss_pred eecCCCCCHHHHHHHhhhhcc-----------ChHHHHHHHHhcC---ceEEEecccccCCccceEE
Confidence 456667899999887766543 2256667777776 4555555555555554443
No 7
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=52.10 E-value=9.3 Score=18.45 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHH
Q psy14349 11 FVVGGIAATISKTTVAPIERVKILLQ 36 (91)
Q Consensus 11 ~~ag~~ag~~~~~~~~P~d~ik~r~q 36 (91)
.--|+.+|=++.-+..|+|..|..+-
T Consensus 15 ~~QGMTaGEVAA~f~w~Le~ar~aLe 40 (68)
T 3i71_A 15 VRQGMTAGEVAAHFGWPLEKARNALE 40 (68)
T ss_dssp CTTCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HhccccHHHHHHHhCCcHHHHHHHHH
Confidence 33477889899999999999998764
No 8
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=42.36 E-value=17 Score=18.65 Aligned_cols=34 Identities=9% Similarity=0.318 Sum_probs=21.7
Q ss_pred cCCCCHHHHHHHHHHhhch----hhcccccHHHHHHHh
Q psy14349 47 RRYRGIGDCFVRIHKEQGT----LSFWRGNSANILRYF 80 (91)
Q Consensus 47 ~~~~~~~~~~~~i~~~~G~----~g~y~G~~~~~~~~~ 80 (91)
+++.+.-+-+..++.+-|+ +.+|+|+...+.|..
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 3566666666677777765 458888887766643
No 9
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=39.89 E-value=28 Score=16.73 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=28.8
Q ss_pred hhccHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHhhchhhccccc
Q psy14349 24 TVAPIERVKILLQIQDSSKNIAARRYRGIGDCFVRIHKEQGTLSFWRGN 72 (91)
Q Consensus 24 ~~~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~g~y~G~ 72 (91)
+--|+|+|..-. .+... ......+..+.-|.-|+-|.-+.+|||.
T Consensus 21 IrIP~DIIEdl~-~~~L~---te~EVmnYiEnqR~~WKLEN~KKly~g~ 65 (67)
T 2bnk_A 21 IRIPSDIIEDLV-NQRLQ---SEQEVLNYIETQRTYWKLENQKKLYRGS 65 (67)
T ss_dssp CCCCHHHHHHHH-TTCCC---CSHHHHHHHHHHHHHHHHHTTSCCCCSC
T ss_pred CcCcHHHHHHHH-HHhhh---hHHHHHHHHHhhHhHHhhhhhHHHHhcc
Confidence 456888886644 32222 1112245566778888989889999985
No 10
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=34.67 E-value=41 Score=16.03 Aligned_cols=16 Identities=25% Similarity=0.243 Sum_probs=12.6
Q ss_pred ccHHHHHHHHHhcCCC
Q psy14349 26 APIERVKILLQIQDSS 41 (91)
Q Consensus 26 ~P~d~ik~r~q~~~~~ 41 (91)
+-+..||+|+|.-+..
T Consensus 9 qrlaaiktrlqalggs 24 (73)
T 2a3d_A 9 QRLAAIKTRLQALGGS 24 (73)
T ss_dssp HHHHHHHHHHHHCSSG
T ss_pred HHHHHHHHHHHHhcCc
Confidence 4567899999998764
No 11
>2l5r_A Antimicrobial peptide alyteserin-1C; alpha helix, antimicrobial protein; NMR {Alytes obstetricans}
Probab=27.96 E-value=26 Score=13.40 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=10.4
Q ss_pred HHHHHhhchhhcccccHHHH
Q psy14349 57 VRIHKEQGTLSFWRGNSANI 76 (91)
Q Consensus 57 ~~i~~~~G~~g~y~G~~~~~ 76 (91)
++|++ -|+.++.+|+.+.+
T Consensus 3 keifk-aglgslvkgiaahv 21 (26)
T 2l5r_A 3 KEIFK-AGLGSLVKGIAAHV 21 (26)
T ss_dssp HHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHH-HhHHHHHHHHHHHH
Confidence 34444 45666666665543
No 12
>1yro_A Alpha-lactalbumin; Arg228Lys mutation, UDP-GAL complex, transferase activator/transferase complex; HET: GDU UDP MES PG4; 1.90A {Mus musculus} SCOP: d.2.1.2 PDB: 1nhe_A* 1nkh_A* 1nmm_A* 1nqi_A* 1nwg_A* 1o23_A* 1oqm_A* 1pzy_A* 1nf5_A* 2fyc_A* 2fyd_A*
Probab=27.37 E-value=42 Score=18.53 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhchhhccccc
Q psy14349 52 IGDCFVRIHKEQGTLSFWRGN 72 (91)
Q Consensus 52 ~~~~~~~i~~~~G~~g~y~G~ 72 (91)
...|.++|++++|+.. |.++
T Consensus 88 ~i~CAk~I~~~~G~~a-W~~w 107 (123)
T 1yro_A 88 DIACAKKILAIKGIDY-WKAY 107 (123)
T ss_dssp HHHHHHHHHHHTCGGG-STTH
T ss_pred HHHHHHHHHHhcCcch-hHHH
Confidence 4789999999999764 4444
No 13
>1hml_A Alpha-lactalbumin; calcium-binding protein; 1.70A {Homo sapiens} SCOP: d.2.1.2
Probab=25.67 E-value=46 Score=18.87 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhhchhhccccc
Q psy14349 52 IGDCFVRIHKEQGTLSFWRGN 72 (91)
Q Consensus 52 ~~~~~~~i~~~~G~~g~y~G~ 72 (91)
...|.++|++++|+.. |.++
T Consensus 107 ~i~CAk~I~~~~G~~a-W~~w 126 (142)
T 1hml_A 107 DIMCAKKILDIKGIDY-WLAH 126 (142)
T ss_dssp HHHHHHHHHHHTCGGG-STHH
T ss_pred HHHHHHHHHHhcCcch-hHHH
Confidence 4789999999999764 4444
No 14
>2fbd_A Lysozyme 1; digestive lysozime, hydrolase; HET: PEG; 1.90A {Musca domestica} PDB: 2h5z_A* 3cb7_A
Probab=25.30 E-value=49 Score=18.23 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhhchhhccccc
Q psy14349 52 IGDCFVRIHKEQGTLSFWRGN 72 (91)
Q Consensus 52 ~~~~~~~i~~~~G~~g~y~G~ 72 (91)
...|.++|++++|+.. |.++
T Consensus 89 ~i~CAk~I~~~~G~~a-W~~w 108 (122)
T 2fbd_A 89 SVTCARKIKSQQGWTA-WSTW 108 (122)
T ss_dssp HHHHHHHHHHHHCGGG-STTH
T ss_pred HHHHHHHHHHhcCCcc-chhh
Confidence 4789999999999765 4443
No 15
>1iiz_A Lysozyme; hydrolase; 2.40A {Antheraea mylitta} SCOP: d.2.1.2 PDB: 1gd6_A
Probab=25.18 E-value=44 Score=18.37 Aligned_cols=16 Identities=19% Similarity=0.189 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhhchhh
Q psy14349 52 IGDCFVRIHKEQGTLS 67 (91)
Q Consensus 52 ~~~~~~~i~~~~G~~g 67 (91)
...|.++|++++|+..
T Consensus 87 ~v~CAk~I~~~~G~~a 102 (120)
T 1iiz_A 87 ASTCAKKIYKRTKFDA 102 (120)
T ss_dssp HHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhcCcch
Confidence 4789999999998764
No 16
>1b9o_A Protein (alpha-lactalbumin); calcium-binding protein, high resolution; 1.15A {Homo sapiens} SCOP: d.2.1.2 PDB: 1a4v_A 1alc_A 1hmk_A 1hfy_A 1f6r_A 1f6s_A 2g4n_A 1fkq_A 1fkv_A 1hfz_A 1hfx_A
Probab=24.75 E-value=44 Score=18.47 Aligned_cols=16 Identities=19% Similarity=0.011 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhhchhh
Q psy14349 52 IGDCFVRIHKEQGTLS 67 (91)
Q Consensus 52 ~~~~~~~i~~~~G~~g 67 (91)
...|.++|++++|+..
T Consensus 88 ~i~CAk~I~~~~G~~a 103 (123)
T 1b9o_A 88 DIMCAKKILDIKGIDY 103 (123)
T ss_dssp HHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHhcCcch
Confidence 4789999999998764
No 17
>2z5i_I TM, tropomyosin alpha-1 chain and general control protein GCN4; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Oryctolagus cuniculus} PDB: 2z5h_I 2g9j_A 1tmz_A
Probab=23.88 E-value=29 Score=15.28 Aligned_cols=13 Identities=15% Similarity=0.360 Sum_probs=9.8
Q ss_pred cHHHHHHHHHhcC
Q psy14349 27 PIERVKILLQIQD 39 (91)
Q Consensus 27 P~d~ik~r~q~~~ 39 (91)
-+|.||-+||+-.
T Consensus 4 ~MdAIKKKMq~lK 16 (40)
T 2z5i_I 4 SMDAIKKKMQMLK 16 (40)
T ss_dssp -CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 4788999998754
No 18
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=22.67 E-value=1.2e+02 Score=20.25 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=24.6
Q ss_pred chhHHHHHHHHHHHHHHHHhhccHHHHHHHHHhcCCC
Q psy14349 5 SDFVHDFVVGGIAATISKTTVAPIERVKILLQIQDSS 41 (91)
Q Consensus 5 ~~~~~~~~ag~~ag~~~~~~~~P~d~ik~r~q~~~~~ 41 (91)
.+++..++.|.++|.++.... .+|.|+..+...
T Consensus 267 v~p~~A~iiG~iag~i~~~~~----~l~~kl~iDD~l 299 (399)
T 2b2h_A 267 VDVKGAIVIGLVAGIVCYLAM----DFRIKKKIDESL 299 (399)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH----HHHHHTTCCCTT
T ss_pred CCHHHHHHHHHHHHHHHHHHH----HHHHHcCCCCCC
Confidence 467788889999998887665 467777776653
No 19
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.34 E-value=85 Score=15.62 Aligned_cols=20 Identities=30% Similarity=0.223 Sum_probs=16.0
Q ss_pred HHHHhhccHHHHHHHHHhcC
Q psy14349 20 ISKTTVAPIERVKILLQIQD 39 (91)
Q Consensus 20 ~~~~~~~P~d~ik~r~q~~~ 39 (91)
++..+..|.|+||.-.|...
T Consensus 38 LA~~lgL~~~VVrVWFqNrR 57 (71)
T 2da7_A 38 ISIAVGLPQEFVKEWFEQRK 57 (71)
T ss_dssp HHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHhhcc
Confidence 56677899999999888754
No 20
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=21.01 E-value=27 Score=19.88 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHhhchhh
Q psy14349 50 RGIGDCFVRIHKEQGTLS 67 (91)
Q Consensus 50 ~~~~~~~~~i~~~~G~~g 67 (91)
..+.++..+++.++|+.+
T Consensus 18 ~~Il~aA~~lf~~~G~~~ 35 (221)
T 3c2b_A 18 NAVLDQALRLLVEGGEKA 35 (221)
T ss_dssp HHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHhCCccc
Confidence 468899999999998654
No 21
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=20.95 E-value=1.4e+02 Score=19.94 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=22.8
Q ss_pred chhHHHHHHHHHHHHHHHHhhccHH-HHHHHHHhcCC
Q psy14349 5 SDFVHDFVVGGIAATISKTTVAPIE-RVKILLQIQDS 40 (91)
Q Consensus 5 ~~~~~~~~ag~~ag~~~~~~~~P~d-~ik~r~q~~~~ 40 (91)
.+++..++.|.++|+++.....-++ .++.|+..+..
T Consensus 257 v~p~~A~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~ 293 (407)
T 3b9w_A 257 VGPVGAFVIGLLGGAISVVGFVFIQPMLESKAKTIDT 293 (407)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCCCCT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 4677788888888888766553332 24455555554
No 22
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=20.09 E-value=1.9e+02 Score=19.99 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=25.3
Q ss_pred chhHHHHHHHHHHHHHHHHhhccH-HHHHHHHHhcCCC
Q psy14349 5 SDFVHDFVVGGIAATISKTTVAPI-ERVKILLQIQDSS 41 (91)
Q Consensus 5 ~~~~~~~~ag~~ag~~~~~~~~P~-d~ik~r~q~~~~~ 41 (91)
.+++..++.|.+||+++.....-+ ..+|.|+..+...
T Consensus 306 v~P~~AliIG~iaG~i~~~~~~~l~~~l~~kl~iDD~l 343 (490)
T 3hd6_A 306 LMPYGALIIGFVCGIISTLGFVYLTPFLESRLHIQDTC 343 (490)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHCCCCccc
Confidence 467888899999998887654322 1366777776653
Done!