RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14349
(91 letters)
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane
protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos
taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 132 bits (334), Expect = 6e-40
Identities = 57/86 (66%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 3 GQSDFVHDFVVGGIAATISKTTVAPIERVKILLQIQDSSKNIAA-RRYRGIGDCFVRIHK 61
F+ DF+ GG+AA ISKT VAPIERVK+LLQ+Q +SK I+A ++Y+GI DC VRI K
Sbjct: 3 QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPK 62
Query: 62 EQGTLSFWRGNSANILRYFPAQALNF 87
EQG LSFWRGN AN++RYFP QALNF
Sbjct: 63 EQGFLSFWRGNLANVIRYFPTQALNF 88
Score = 62.7 bits (153), Expect = 2e-13
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 2 GGQSDFVHDFVVGGIAATISKTTVAPIERVKILLQIQDSSKNIAARRYRGIGDCFVRIHK 61
F + GG A S V P++ + L K A R + G+G+C +I K
Sbjct: 107 QFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKGAAQREFTGLGNCITKIFK 165
Query: 62 EQGTLSFWRGNSANILRYFPAQALNF 87
G ++G + ++ +A F
Sbjct: 166 SDGLRGLYQGFNVSVQGIIIYRAAYF 191
Score = 60.0 bits (146), Expect = 1e-12
Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 4 QSDFVHDFVVGGIAATISKTTVAPIERVKILLQIQDSSKNIAARRYRGIGDCFVRIHKEQ 63
+ +++ ++ P + V+ + +Q S + A Y G DC+ +I K++
Sbjct: 206 NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQ-SGRKGADIMYTGTVDCWRKIAKDE 264
Query: 64 GTLSFWRGNSANILRYFPA 82
G +F++G +N+LR
Sbjct: 265 GPKAFFKGAWSNVLRGMGG 283
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 61.2 bits (149), Expect = 7e-13
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 10 DFVVGGIAATISKTTVAPIERVKILLQIQ----DSSKNIAARRYRGIGDCFVRIHKEQGT 65
F+ G AA I+ P++ K+ LQIQ + A+ +YRG+ + + + +G
Sbjct: 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGP 63
Query: 66 LSFWRGNSANILR 78
S + G A + R
Sbjct: 64 RSLYNGLVAGLQR 76
Score = 58.5 bits (142), Expect = 5e-12
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 2 GGQSDFVHDFVVGGIAATISKTTVAPIERVKILLQIQDSSKNIAARRYRGIGDCFVRIHK 61
+ + G ++ P + VK+ Q Q ++ RRY+ + + I +
Sbjct: 99 SEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQ--ARAGGGRRYQSTVEAYKTIAR 156
Query: 62 EQGTLSFWRGNSANILR 78
E+G W+G S N+ R
Sbjct: 157 EEGIRGLWKGTSPNVAR 173
Score = 47.3 bits (113), Expect = 5e-08
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 11 FVVGGIAATISKTTVAPIERVKILLQIQDSSKNIAARRYRGIGDCFVRIHKEQGTLSFWR 70
F A + +P++ VK N A +Y G C + + +++G +F++
Sbjct: 206 FTSAFGAGFCTTVIASPVDVVKTRYM------NSALGQYHSAGHCALTMLRKEGPRAFYK 259
Query: 71 GNSANILRYFPAQALNF 87
G + LR + F
Sbjct: 260 GFMPSFLRLGSWNVVMF 276
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.9 bits (84), Expect = 2e-04
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 6/28 (21%)
Query: 59 IHKEQGTLSFWRGNSANILRYFPAQALN 86
+ K Q +L + +SA PA A+
Sbjct: 22 LKKLQASLKLYADDSA------PALAIK 43
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 1.2
Identities = 13/92 (14%), Positives = 38/92 (41%), Gaps = 18/92 (19%)
Query: 6 DFVHDFVVGG----IAATISKTTVAPIERVKILLQIQDSSKNIAARRYRGIGDCFVRIHK 61
+F + ++ G +AA + + + + K L++ +++ +A R +
Sbjct: 90 EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPF-----------D 138
Query: 62 EQGTLSFWRG---NSANILRYFPAQALNFEYW 90
++ + +R +A ++ F Q +Y+
Sbjct: 139 KKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF 170
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead
transcription factors, FOXM1, W helix; HET: DNA; 2.21A
{Homo sapiens}
Length = 142
Score = 24.8 bits (54), Expect = 4.5
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 54 DCFVRIHKEQGTLSFWR 70
D FVR G +SFW
Sbjct: 75 DMFVRETSANGKVSFWT 91
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo
sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Length = 341
Score = 24.5 bits (53), Expect = 7.1
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 33 ILLQIQDSSKNIAARRYRGIGDCFV-RIHKEQGTLSFWRGNSANILRYFP 81
++ ++D S+NI + + FV +K Q L N A ++ +
Sbjct: 259 MMNLLRDKSRNIQFEAFH-VFKVFVANPNKTQPILDILLKNQAKLIEFLS 307
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP;
1.87A {Homo sapiens} PDB: 3co6_C*
Length = 110
Score = 23.6 bits (51), Expect = 9.7
Identities = 6/18 (33%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 54 DCFVRIHKEQ-GTLSFWR 70
F+++H E G S+W
Sbjct: 85 SKFIKVHNEATGKSSWWM 102
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.138 0.425
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,402,462
Number of extensions: 70644
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 12
Length of query: 91
Length of database: 6,701,793
Length adjustment: 58
Effective length of query: 33
Effective length of database: 5,082,375
Effective search space: 167718375
Effective search space used: 167718375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.6 bits)