RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14349
         (91 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
          heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score = 66.7 bits (161), Expect = 2e-15
 Identities = 57/86 (66%), Positives = 71/86 (82%), Gaps = 1/86 (1%)

Query: 7  FVHDFVVGGIAATISKTTVAPIERVKILLQIQDSSKNIAA-RRYRGIGDCFVRIHKEQGT 65
          F+ DF+ GG+AA ISKT VAPIERVK+LLQ+Q +SK I+A ++Y+GI DC VRI KEQG 
Sbjct: 6  FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGF 65

Query: 66 LSFWRGNSANILRYFPAQALNFEYWN 91
          LSFWRGN AN++RYFP QALNF + +
Sbjct: 66 LSFWRGNLANVIRYFPTQALNFAFKD 91



 Score = 46.6 bits (109), Expect = 3e-08
 Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 7   FVHDFVVGGIAATISKTTVAPIERVKILLQIQDSSKNIAARRYRGIGDCFVRIHKEQGTL 66
            +  +++      ++     P + V+  + +Q   K  A   Y G  DC+ +I K++G  
Sbjct: 208 IIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKG-ADIMYTGTVDCWRKIAKDEGPK 266

Query: 67  SFWRGNSANILRYFPA 82
           +F++G  +N+LR    
Sbjct: 267 AFFKGAWSNVLRGMGG 282


>d1hh2p4 d.202.1.1 (P:1-126) Transcription factor NusA, N-terminal
          domain {Thermotoga maritima [TaxId: 2336]}
          Length = 126

 Score = 24.1 bits (52), Expect = 2.4
 Identities = 4/43 (9%), Positives = 19/43 (44%)

Query: 28 IERVKILLQIQDSSKNIAARRYRGIGDCFVRIHKEQGTLSFWR 70
          I + +++  ++ +  +   + +    +  V I +  G +  ++
Sbjct: 18 ISKEEVIPILEKALVSAYRKNFGNSKNVEVVIDRNTGNIKVYQ 60


>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 93

 Score = 23.1 bits (49), Expect = 4.9
 Identities = 7/30 (23%), Positives = 10/30 (33%)

Query: 53 GDCFVRIHKEQGTLSFWRGNSANILRYFPA 82
          GD      K  G   +  G+      +FP 
Sbjct: 27 GDIIQVDEKTVGEPGWLYGSFQGNFGWFPC 56


>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 137

 Score = 23.0 bits (49), Expect = 6.5
 Identities = 3/17 (17%), Positives = 4/17 (23%)

Query: 49 YRGIGDCFVRIHKEQGT 65
           RG G   +        
Sbjct: 41 ERGRGLLRLNDMASTDD 57


>d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus)
          [TaxId: 9796]}
          Length = 121

 Score = 22.7 bits (48), Expect = 7.2
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 53 GDCFVRIHKEQGTLSFWRGNSANILRYFPAQALNFEYWN 91
           DCF+  H + G +  W+G  AN+     A     ++ +
Sbjct: 40 EDCFILDHGKDGKIFVWKGKQANMEERKAALKTASDFIS 78


>d1eu8a_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP
          {Archaeon Thermococcus litoralis [TaxId: 2265]}
          Length = 407

 Score = 22.9 bits (47), Expect = 8.7
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 62 EQGTLSFWRGNSANILRYFPAQALNFE 88
          E+G + F  G + N + Y+      FE
Sbjct: 2  EEGKIVFAVGGAPNEIEYWKGVIAEFE 28


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.138    0.425 

Gapped
Lambda     K      H
   0.267   0.0592    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 342,000
Number of extensions: 12921
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 7
Length of query: 91
Length of database: 2,407,596
Length adjustment: 55
Effective length of query: 36
Effective length of database: 1,652,446
Effective search space: 59488056
Effective search space used: 59488056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.2 bits)