BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1435
(171 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Y5C|A Chain A, Structure Of Human Ferredoxin 2 (Fdx2)in Complex With
2fe2s Cluster
pdb|2Y5C|B Chain B, Structure Of Human Ferredoxin 2 (Fdx2)in Complex With
2fe2s Cluster
Length = 109
Score = 147 bits (370), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 68/117 (58%), Positives = 89/117 (76%), Gaps = 11/117 (9%)
Query: 43 EIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDA 102
++VN+ F+D+ G+R + G+VGDNVL+LA R+ + +EGACEASLAC+TCHVYV ++LD
Sbjct: 4 DVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACSTCHVYVSEDHLDL 63
Query: 103 LPPAEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKATR 159
LPP EE+EDD+LD+AP L++N SRLGCQI+LT ELEG E TLPK TR
Sbjct: 64 LPPPEEREDDMLDMAPLLQEN-----------SRLGCQIVLTPELEGAEFTLPKITR 109
>pdb|2WLB|A Chain A, Adrenodoxin-Like Ferredoxin Etp1fd(516-618) Of
Schizosaccharomyces Pombe Mitochondria
pdb|2WLB|B Chain B, Adrenodoxin-Like Ferredoxin Etp1fd(516-618) Of
Schizosaccharomyces Pombe Mitochondria
Length = 103
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 71/111 (63%), Gaps = 11/111 (9%)
Query: 45 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALP 104
+ + F+ +G+ I+G GD++L LAH I +EGACE S+AC+TCHV V E+ + L
Sbjct: 4 IKVFFVTPEGREIMIEGNEGDSILDLAHANNIDLEGACEGSVACSTCHVIVDPEHYELLD 63
Query: 105 PAEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLP 155
P EE E+D+LDLA L++ SRLGCQ++L K+L+GI V +P
Sbjct: 64 PPEEDEEDMLDLAFGLEE-----------TSRLGCQVLLRKDLDGIRVRIP 103
>pdb|1L6V|A Chain A, Structure Of Reduced Bovine Adrenodoxin
Length = 128
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 72/125 (57%), Gaps = 14/125 (11%)
Query: 38 PKSEDEIVNITFIDKDGKRREIKGKVGDNVL--YLAHRYEIPMEGACEASLACTTCHVYV 95
SED+I + FI++DG+ KGK+GD++L + + +I GACE +LAC+TCH+
Sbjct: 1 SSSEDKIT-VHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIF 59
Query: 96 KHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLP 155
+ + L ++E+D+LDLA L D SRLGCQI LTK ++ + V +P
Sbjct: 60 EQHIFEKLEAITDEENDMLDLAYGLTD-----------RSRLGCQICLTKAMDNMTVRVP 108
Query: 156 KATRN 160
A +
Sbjct: 109 DAVSD 113
>pdb|1CJE|A Chain A, Adrenodoxin From Bovine
pdb|1CJE|B Chain B, Adrenodoxin From Bovine
pdb|1CJE|C Chain C, Adrenodoxin From Bovine
pdb|1CJE|D Chain D, Adrenodoxin From Bovine
Length = 127
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 72/124 (58%), Gaps = 14/124 (11%)
Query: 39 KSEDEIVNITFIDKDGKRREIKGKVGDNVL--YLAHRYEIPMEGACEASLACTTCHVYVK 96
SED+I + FI++DG+ KGK+GD++L + + +I GACE +LAC+TCH+ +
Sbjct: 1 SSEDKIT-VHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFE 59
Query: 97 HEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPK 156
+ L ++E+D+LDLA L D SRLGCQI LTK ++ + V +P
Sbjct: 60 QHIFEKLEAITDEENDMLDLAYGLTD-----------RSRLGCQICLTKAMDNMTVRVPD 108
Query: 157 ATRN 160
A +
Sbjct: 109 AVSD 112
>pdb|1L6U|A Chain A, Nmr Structure Of Oxidized Adrenodoxin
Length = 128
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 72/124 (58%), Gaps = 14/124 (11%)
Query: 39 KSEDEIVNITFIDKDGKRREIKGKVGDNVL--YLAHRYEIPMEGACEASLACTTCHVYVK 96
SED+I + FI++DG+ KGK+GD++L + + +I GACE +LAC+TCH+ +
Sbjct: 2 SSEDKIT-VHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFE 60
Query: 97 HEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPK 156
+ L ++E+D+LDLA L D SRLGCQI LTK ++ + V +P
Sbjct: 61 QHIFEKLEAITDEENDMLDLAYGLTD-----------RSRLGCQICLTKAMDNMTVRVPD 109
Query: 157 ATRN 160
A +
Sbjct: 110 AVSD 113
>pdb|1E6E|B Chain B, Adrenodoxin ReductaseADRENODOXIN COMPLEX OF MITOCHONDRIAL
P450 Systems
pdb|1E6E|D Chain D, Adrenodoxin ReductaseADRENODOXIN COMPLEX OF MITOCHONDRIAL
P450 Systems
Length = 128
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 72/124 (58%), Gaps = 14/124 (11%)
Query: 39 KSEDEIVNITFIDKDGKRREIKGKVGDNVL--YLAHRYEIPMEGACEASLACTTCHVYVK 96
SED+I + FI++DG+ KGK+GD++L + + +I GACE +LAC+TCH+ +
Sbjct: 2 SSEDKIT-VHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFE 60
Query: 97 HEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPK 156
+ L ++E+D+LDLA L D SRLGCQI LTK ++ + V +P
Sbjct: 61 QHIFEKLEAITDEENDMLDLAYGLTD-----------RSRLGCQICLTKAMDNMTVRVPD 109
Query: 157 ATRN 160
A +
Sbjct: 110 AVSD 113
>pdb|3P1M|A Chain A, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|B Chain B, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|C Chain C, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|D Chain D, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|E Chain E, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|F Chain F, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|G Chain G, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|H Chain H, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
Length = 132
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 71/122 (58%), Gaps = 14/122 (11%)
Query: 38 PKSEDEIVNITFIDKDGKRREIKGKVGDNVL--YLAHRYEIPMEGACEASLACTTCHVYV 95
SED+I + FI++DG+ KGKVGD++L + + +I GACE +LAC+TCH+
Sbjct: 2 SSSEDKIT-VHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIF 60
Query: 96 KHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLP 155
+ + L ++E+D+LDLA L D SRLGCQI LTK ++ + V +P
Sbjct: 61 EDHIYEKLDAITDEENDMLDLAYGLTD-----------RSRLGCQICLTKSMDNMTVRVP 109
Query: 156 KA 157
+
Sbjct: 110 ET 111
>pdb|3N9Z|C Chain C, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3N9Z|D Chain D, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3NA1|C Chain C, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
pdb|3NA1|D Chain D, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
Length = 123
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 71/121 (58%), Gaps = 14/121 (11%)
Query: 39 KSEDEIVNITFIDKDGKRREIKGKVGDNVL--YLAHRYEIPMEGACEASLACTTCHVYVK 96
SED+I + FI++DG+ KGKVGD++L + + +I GACE +LAC+TCH+ +
Sbjct: 1 SSEDKIT-VHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFE 59
Query: 97 HEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPK 156
+ L ++E+D+LDLA L D SRLGCQI LTK ++ + V +P+
Sbjct: 60 DHIYEKLDAITDEENDMLDLAYGLTD-----------RSRLGCQICLTKSMDNMTVRVPE 108
Query: 157 A 157
Sbjct: 109 T 109
>pdb|3N9Y|C Chain C, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
pdb|3N9Y|D Chain D, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
Length = 114
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 71/121 (58%), Gaps = 14/121 (11%)
Query: 39 KSEDEIVNITFIDKDGKRREIKGKVGDNVL--YLAHRYEIPMEGACEASLACTTCHVYVK 96
SED+I + FI++DG+ KGKVGD++L + + +I GACE +LAC+TCH+ +
Sbjct: 1 SSEDKIT-VHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFE 59
Query: 97 HEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPK 156
+ L ++E+D+LDLA L D SRLGCQI LTK ++ + V +P+
Sbjct: 60 DHIYEKLDAITDEENDMLDLAYGLTD-----------RSRLGCQICLTKSMDNMTVRVPE 108
Query: 157 A 157
Sbjct: 109 T 109
>pdb|2BT6|A Chain A, Ru(Bpy)2(Mbpy)-Modified Bovine Adrenodoxin
pdb|2BT6|B Chain B, Ru(Bpy)2(Mbpy)-Modified Bovine Adrenodoxin
Length = 108
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 68/118 (57%), Gaps = 13/118 (11%)
Query: 40 SEDEIVNITFIDKDGKRREIKGKVGDNVL--YLAHRYEIPMEGACEASLACTTCHVYVKH 97
S + + + FI++DG+ KGK+GD++L + + +I GACE +LAC+TCH+ +
Sbjct: 2 SSGDKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQ 61
Query: 98 EYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLP 155
+ L ++E+D+LDLA L D SRLGCQI LTK ++ + V +P
Sbjct: 62 HIFEKLEAITDEENDMLDLAYGLTD-----------RSRLGCQICLTKAMDNMTVRVP 108
>pdb|1AYF|A Chain A, Bovine Adrenodoxin (oxidized)
pdb|1AYF|B Chain B, Bovine Adrenodoxin (oxidized)
Length = 105
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 66/113 (58%), Gaps = 13/113 (11%)
Query: 45 VNITFIDKDGKRREIKGKVGDNVL--YLAHRYEIPMEGACEASLACTTCHVYVKHEYLDA 102
+ + FI++DG+ KGK+GD++L + + +I GACE +LAC+TCH+ + +
Sbjct: 4 ITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEK 63
Query: 103 LPPAEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLP 155
L ++E+D+LDLA L D SRLGCQI LTK ++ + V +P
Sbjct: 64 LEAITDEENDMLDLAYGLTD-----------RSRLGCQICLTKAMDNMTVRVP 105
>pdb|2JQR|B Chain B, Solution Model Of Crosslinked Complex Of Cytochrome C And
Adrenodoxin
Length = 105
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 65/113 (57%), Gaps = 13/113 (11%)
Query: 45 VNITFIDKDGKRREIKGKVGDNVL--YLAHRYEIPMEGACEASLACTTCHVYVKHEYLDA 102
+ + FI++DG+ KGK+GD++L + + +I GACE +LAC+TCH+ + +
Sbjct: 4 ITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEK 63
Query: 103 LPPAEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLP 155
L ++E+D+LD A L D SRLGCQI LTK ++ + V +P
Sbjct: 64 LEAITDEENDMLDCAYGLTD-----------RSRLGCQISLTKAMDNMTVRVP 105
>pdb|3HUI|A Chain A, Crystal Structure Of The Mutant A105r Of [2fe-2s]
Ferredoxin In The Class I Cyp199a2 System From
Rhodopseudomonas Palustris
Length = 126
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 12/117 (10%)
Query: 44 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDA 102
+ I F+D G+ R ++ + G V+ A R IP +E C + AC TCHVYV + +
Sbjct: 21 MAKINFVDHTGETRTVEVEEGATVMEAAIRNAIPGVEAECGGACACATCHVYVDEAWREK 80
Query: 103 LPPAEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKATR 159
+ E+D+LD +V NSRL CQI ++ EL+G+ VT P+ R
Sbjct: 81 VGGPSPMEEDMLDFG-----------YDVRPNSRLSCQIKVSNELDGLIVTTPERQR 126
>pdb|1OQQ|A Chain A, Crystal Structure Of C73sC85S MUTANT OF PUTIDAREDOXIN, A
[2FE-2s] Ferredoxin From Pseudomonas Putida, At 1.47a
Resolution
pdb|1OQQ|B Chain B, Crystal Structure Of C73sC85S MUTANT OF PUTIDAREDOXIN, A
[2FE-2s] Ferredoxin From Pseudomonas Putida, At 1.47a
Resolution
pdb|1XLN|A Chain A, Crystal Structure Of Oxidized C73sC85S PUTIDAREDOXIN, A
[2fe-2s] Ferredoxin From Pseudomonas Putida
pdb|1XLN|B Chain B, Crystal Structure Of Oxidized C73sC85S PUTIDAREDOXIN, A
[2fe-2s] Ferredoxin From Pseudomonas Putida
pdb|1XLO|A Chain A, Structure Of Reduced C73s/c85s Putidaredoxin, A [2fe-2s]
Ferredoxin From Pseudomonas Putida
pdb|1XLO|B Chain B, Structure Of Reduced C73s/c85s Putidaredoxin, A [2fe-2s]
Ferredoxin From Pseudomonas Putida
pdb|3LB8|C Chain C, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
pdb|3LB8|D Chain D, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
Length = 106
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 13/111 (11%)
Query: 47 ITFIDKDGKRREIKGKVGDNVLYLAHRYEI-PMEGACEASLACTTCHVYVKHEYLDALPP 105
+ ++ DG RRE+ G +++ A I + G C S +C TCHVYV + D +P
Sbjct: 3 VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPA 62
Query: 106 AEEKEDDLLD-LAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLP 155
A E+E +L+ + LK NSRL CQII+T EL+GI V +P
Sbjct: 63 ANEREIGMLESVTAELKP-----------NSRLSCQIIMTPELDGIVVDVP 102
>pdb|1GPX|A Chain A, C85s Gapdx, Nmr, 20 Structures
Length = 106
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 11/110 (10%)
Query: 47 ITFIDKDGKRREIKGKVGDNVLYLAHRYEI-PMEGACEASLACTTCHVYVKHEYLDALPP 105
+ ++ DG RRE+ G +++ A I + G C S +C TCHVYV + D +P
Sbjct: 3 VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPA 62
Query: 106 AEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLP 155
A E+E +L+ + NSRL CQII+T EL+GI V +P
Sbjct: 63 ANEREIGMLECVT----------AELKPNSRLSCQIIMTPELDGIVVDVP 102
>pdb|1PDX|A Chain A, Putidaredoxin
pdb|1YJI|A Chain A, Rdc-Refined Solution Nmr Structure Of Reduced
Putidaredoxin
pdb|1YJJ|A Chain A, Rdc-Refined Solution Nmr Structure Of Oxidized
Putidaredoxin
Length = 106
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 11/110 (10%)
Query: 47 ITFIDKDGKRREIKGKVGDNVLYLAHRYEI-PMEGACEASLACTTCHVYVKHEYLDALPP 105
+ ++ DG RRE+ G +++ A I + G C S +C TCHVYV + D +P
Sbjct: 3 VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPA 62
Query: 106 AEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLP 155
A E+E +L+ + NSRL CQII+T EL+GI V +P
Sbjct: 63 ANEREIGMLECVT----------AELKPNSRLCCQIIMTPELDGIVVDVP 102
>pdb|1OQR|A Chain A, Crystal Structure Of C73s Mutant Of Putidaredoxin, A [2fe-
2s] Ferredoxin From Pseudomonas Putida, At 1.65a
Resolution
pdb|1OQR|B Chain B, Crystal Structure Of C73s Mutant Of Putidaredoxin, A [2fe-
2s] Ferredoxin From Pseudomonas Putida, At 1.65a
Resolution
pdb|1OQR|C Chain C, Crystal Structure Of C73s Mutant Of Putidaredoxin, A [2fe-
2s] Ferredoxin From Pseudomonas Putida, At 1.65a
Resolution
pdb|1XLP|A Chain A, Structure Of Oxidized C73s Putidaredoxin From Pseudomonas
Putida
pdb|1XLP|B Chain B, Structure Of Oxidized C73s Putidaredoxin From Pseudomonas
Putida
pdb|1XLP|C Chain C, Structure Of Oxidized C73s Putidaredoxin From Pseudomonas
Putida
pdb|1XLQ|A Chain A, Crystal Structure Of Reduced C73s Putidaredoxin From
Pseudomonas Putida
pdb|1XLQ|B Chain B, Crystal Structure Of Reduced C73s Putidaredoxin From
Pseudomonas Putida
pdb|1XLQ|C Chain C, Crystal Structure Of Reduced C73s Putidaredoxin From
Pseudomonas Putida
Length = 106
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 60/111 (54%), Gaps = 13/111 (11%)
Query: 47 ITFIDKDGKRREIKGKVGDNVLYLAHRYEI-PMEGACEASLACTTCHVYVKHEYLDALPP 105
+ ++ DG RRE+ G +++ A I + G C S +C TCHVYV + D +P
Sbjct: 3 VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPA 62
Query: 106 AEEKEDDLLD-LAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLP 155
A E+E +L+ + LK NSRL C CQII+T EL+GI V +P
Sbjct: 63 ANEREIGMLESVTAELKPNSRL-C----------CQIIMTPELDGIVVDVP 102
>pdb|1R7S|A Chain A, Putidaredoxin (Fe2s2 Ferredoxin), C73g Mutant
pdb|1R7S|B Chain B, Putidaredoxin (Fe2s2 Ferredoxin), C73g Mutant
pdb|1R7S|C Chain C, Putidaredoxin (Fe2s2 Ferredoxin), C73g Mutant
Length = 106
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 60/111 (54%), Gaps = 13/111 (11%)
Query: 47 ITFIDKDGKRREIKGKVGDNVLYLAHRYEI-PMEGACEASLACTTCHVYVKHEYLDALPP 105
+ ++ DG RRE+ G +++ A I + G C S +C TCHVYV + D +P
Sbjct: 3 VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPA 62
Query: 106 AEEKEDDLLD-LAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLP 155
A E+E +L+ + LK NSRL C CQII+T EL+GI V +P
Sbjct: 63 ANEREIGMLEGVTAELKPNSRL-C----------CQIIMTPELDGIVVDVP 102
>pdb|1PUT|A Chain A, An Nmr-Derived Model For The Solution Structure Of
Oxidized Putidaredoxin, A 2fe, 2-S Ferredoxin From
Pseudomonas
Length = 106
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 57/110 (51%), Gaps = 11/110 (10%)
Query: 47 ITFIDKDGKRREIKGKVGDNVLYLAHRYEI-PMEGACEASLACTTCHVYVKHEYLDALPP 105
+ ++ DG RR++ G +++ A I + G C S +C TCHVYV + D +P
Sbjct: 3 VVYVSHDGTRRQLDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPA 62
Query: 106 AEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLP 155
A E+E +L+ + NSRL CQII+T EL+GI V +P
Sbjct: 63 ANEREIGMLECVT----------AELKPNSRLCCQIIMTPELDGIVVDVP 102
>pdb|1E9M|A Chain A, Ferredoxin Vi From Rhodobacter Capsulatus
pdb|1UWM|A Chain A, Reduced Ferredoxin 6 From Rhodobacter Capsulatus
Length = 106
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 59/113 (52%), Gaps = 11/113 (9%)
Query: 45 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDAL 103
I FI+ +G R E++ K G V+ A +P ++ C + AC+TCH YV ++D L
Sbjct: 1 AKIIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKL 60
Query: 104 PPAEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPK 156
P A E D++D A + N SRL CQI +T L+G+ V LP+
Sbjct: 61 PKALPTETDMIDFA--YEPNPA--------TSRLTCQIKVTSLLDGLVVHLPE 103
>pdb|1I7H|A Chain A, Crystal Sturcuture Of Fdx
pdb|1I7H|B Chain B, Crystal Sturcuture Of Fdx
pdb|1I7H|C Chain C, Crystal Sturcuture Of Fdx
Length = 111
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 59 IKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAP 118
++ G+ +L A R I +E ACE S ACTTCH V+ E D+LP + E+EDD+LD A
Sbjct: 19 LEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVR-EGFDSLPESSEQEDDMLDKAW 77
Query: 119 FLKDNSRLGCQNVMYNSRLGCQI 141
L+ SRL CQ + + L +I
Sbjct: 78 GLEPESRLSCQARVTDEDLVVEI 100
>pdb|3NA0|C Chain C, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
pdb|3NA0|D Chain D, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
Length = 68
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 72 HRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQ 129
+ +I GACE +LAC+TCH+ + + L ++E+D+LDLA L D SRLGCQ
Sbjct: 9 NNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQ 66
>pdb|3AH7|A Chain A, Crystal Structure Of The Isc-Like [2fe-2s] Ferredoxin
(Fdxb) From Pseudomonas Putida Jcm 20004
Length = 113
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 59 IKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAP 118
++ K G N+L LAH + I ME AC ACTTCH V+ + D+L A+E E+D+LD A
Sbjct: 19 VEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIVRKGF-DSLEEADELEEDMLDKAW 77
Query: 119 FLKDNSRLGCQNVMYNSRLGCQI 141
L+ SRLGCQ + + L +I
Sbjct: 78 GLEAQSRLGCQVFVADEDLTIEI 100
>pdb|3LXF|A Chain A, Crystal Structure Of [2fe-2s] Ferredoxin Arx From
Novosphingobium Aromaticivorans
pdb|3LXF|B Chain B, Crystal Structure Of [2fe-2s] Ferredoxin Arx From
Novosphingobium Aromaticivorans
pdb|3LXF|C Chain C, Crystal Structure Of [2fe-2s] Ferredoxin Arx From
Novosphingobium Aromaticivorans
pdb|3LXF|D Chain D, Crystal Structure Of [2fe-2s] Ferredoxin Arx From
Novosphingobium Aromaticivorans
pdb|3LXF|E Chain E, Crystal Structure Of [2fe-2s] Ferredoxin Arx From
Novosphingobium Aromaticivorans
Length = 104
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 47 ITFIDKDGKRREIKGKVGDNVLYLAHRYEI-PMEGACEASLACTTCHVYVKHEYLDALPP 105
I +DG R EI+ + G +++ I + C +C TCHV V + D LP
Sbjct: 3 ILVTTRDGTRTEIQAEPGLSLMEALRDAGIDELLALCGGCCSCATCHVLVAPAFADRLPA 62
Query: 106 AEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEV 152
E+DLLD + + +SRL CQI + +LEG+EV
Sbjct: 63 LSGDENDLLDSS-----------DHRTPHSRLSCQITINDKLEGLEV 98
>pdb|1B9R|A Chain A, Terpredoxin From Pseudomonas Sp
Length = 105
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Query: 47 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPP 105
+ FID+ + + G +++ +A + +P + C S C TC + ++ +++ +
Sbjct: 3 VVFIDEQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGE 62
Query: 106 AEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLP 155
A E+DLL + + +RL CQ+ + ++G+ V +P
Sbjct: 63 ANPDENDLLQSTG----------EPMTAGTRLSCQVFIDPSMDGLIVRVP 102
>pdb|1S9V|A Chain A, Crystal Structure Of Hla-Dq2 Complexed With Deamidated
Gliadin Peptide
pdb|1S9V|D Chain D, Crystal Structure Of Hla-Dq2 Complexed With Deamidated
Gliadin Peptide
Length = 193
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 66 NVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKED 111
N+ +L++ + + EG E S + H + K YL LP AEE D
Sbjct: 120 NITWLSNGHSV-TEGVSETSFLSKSDHSFFKISYLTLLPSAEESYD 164
>pdb|4GG6|A Chain A, Protein Complex
pdb|4GG6|C Chain C, Protein Complex
Length = 192
Score = 30.0 bits (66), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 66 NVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKED 111
N+ +L++ + + EG E S + H + K YL LP A+E D
Sbjct: 121 NITWLSNGHSV-TEGVSETSFLSKSDHSFFKISYLTFLPSADEIYD 165
>pdb|2NNA|A Chain A, Structure Of The Mhc Class Ii Molecule Hla-Dq8 Bound With
A Deamidated Gluten Peptide
Length = 184
Score = 30.0 bits (66), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 66 NVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKED 111
N+ +L++ + + EG E S + H + K YL LP A+E D
Sbjct: 121 NITWLSNGHSV-TEGVSETSFLSKSDHSFFKISYLTFLPSADEIYD 165
>pdb|4D8P|A Chain A, Structural And Functional Studies Of The Trans-Encoded
Hla-Dq2.3 (Dqa103:01DQB102:01) MOLECULE
pdb|4D8P|C Chain C, Structural And Functional Studies Of The Trans-Encoded
Hla-Dq2.3 (Dqa103:01DQB102:01) MOLECULE
Length = 213
Score = 30.0 bits (66), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 66 NVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKED 111
N+ +L++ + + EG E S + H + K YL LP A+E D
Sbjct: 121 NITWLSNGHSV-TEGVSETSFLSKSDHSFFKISYLTFLPSADEIYD 165
>pdb|1UVQ|A Chain A, Crystal Structure Of Hla-Dq0602 In Complex With A
Hypocretin Peptide
Length = 197
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 66 NVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKED 111
N+ +L++ + EG E S + H + K YL LP A+E D
Sbjct: 121 NITWLSNGQSV-TEGVSETSFLSKSDHSFFKISYLTFLPSADEIYD 165
>pdb|3PL6|A Chain A, Structure Of Autoimmune Tcr Hy.1b11 In Complex With
Hla-Dq1 And Mbp 85-99
Length = 194
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 66 NVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKED 111
N+ +L++ + EG E S + H + K YL LP A+E D
Sbjct: 121 NITWLSNGQSV-TEGVSETSFLSKSDHSFFKISYLTFLPSADEIYD 165
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 32 EYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHR----YEIPMEGACEASL- 86
EY+ Q + ED++ N+ +D E+ GD+ YL+ R Y + + A E SL
Sbjct: 77 EYDLQ--RCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGGKYSVSKDEAEEVSLI 134
Query: 87 ACTTCHVYVK 96
+C TC + ++
Sbjct: 135 SCDTCSLIIE 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,528,356
Number of Sequences: 62578
Number of extensions: 220069
Number of successful extensions: 661
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 594
Number of HSP's gapped (non-prelim): 43
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)