Query psy1435
Match_columns 171
No_of_seqs 143 out of 1212
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 17:38:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1435.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1435hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3309|consensus 100.0 2.3E-33 5.1E-38 221.5 11.3 143 15-171 17-159 (159)
2 PLN02593 adrenodoxin-like ferr 100.0 8.8E-32 1.9E-36 204.7 13.0 116 45-171 1-117 (117)
3 PTZ00490 Ferredoxin superfamil 100.0 8E-28 1.7E-32 189.2 13.2 119 31-160 21-141 (143)
4 TIGR02007 fdx_isc ferredoxin, 99.9 2.1E-21 4.6E-26 145.7 11.1 95 51-161 12-106 (110)
5 COG0633 Fdx Ferredoxin [Energy 99.9 4.1E-21 9E-26 142.7 9.9 100 44-157 1-101 (102)
6 TIGR02008 fdx_plant ferredoxin 99.8 1.4E-18 3E-23 127.6 8.1 94 45-160 3-96 (97)
7 CHL00134 petF ferredoxin; Vali 99.7 1.1E-17 2.4E-22 123.5 8.6 94 45-160 4-98 (99)
8 TIGR01941 nqrF NADH:ubiquinone 99.7 6.9E-17 1.5E-21 143.7 10.2 96 43-157 28-123 (405)
9 PTZ00038 ferredoxin; Provision 99.7 9.2E-17 2E-21 131.8 9.2 93 45-160 96-188 (191)
10 PLN03136 Ferredoxin; Provision 99.7 3.4E-16 7.5E-21 123.9 8.8 93 44-159 54-146 (148)
11 PRK10713 2Fe-2S ferredoxin Yfa 99.6 3.1E-15 6.7E-20 107.2 9.0 83 44-154 1-84 (84)
12 PRK05464 Na(+)-translocating N 99.6 3.5E-15 7.6E-20 133.0 10.4 97 40-157 31-127 (409)
13 cd00207 fer2 2Fe-2S iron-sulfu 99.6 2.2E-15 4.7E-20 105.3 7.2 83 48-153 2-84 (84)
14 COG3894 Uncharacterized metal- 99.6 2.8E-15 6.1E-20 137.3 6.1 91 44-159 1-91 (614)
15 COG2871 NqrF Na+-transporting 99.6 2.7E-15 5.9E-20 130.6 5.2 111 30-161 21-132 (410)
16 PF00111 Fer2: 2Fe-2S iron-sul 99.5 8.4E-15 1.8E-19 101.8 5.7 48 52-100 3-52 (78)
17 PRK07609 CDP-6-deoxy-delta-3,4 99.5 1.8E-14 3.8E-19 124.6 7.9 92 45-159 3-94 (339)
18 PRK11872 antC anthranilate dio 99.5 2.6E-14 5.7E-19 124.4 8.7 93 46-158 4-96 (340)
19 PRK05713 hypothetical protein; 99.5 6.2E-14 1.3E-18 120.6 6.8 85 44-155 1-85 (312)
20 TIGR02160 PA_CoA_Oxy5 phenylac 99.4 5.3E-13 1.1E-17 115.9 7.9 90 43-154 261-351 (352)
21 PRK10684 HCP oxidoreductase, N 99.4 9.8E-13 2.1E-17 113.9 7.9 102 20-152 230-331 (332)
22 PF13510 Fer2_4: 2Fe-2S iron-s 98.9 1E-09 2.2E-14 78.5 4.4 50 42-96 1-59 (82)
23 PRK07569 bidirectional hydroge 98.8 9E-09 2E-13 86.1 6.4 71 44-156 3-78 (234)
24 PRK08166 NADH dehydrogenase su 98.5 1.5E-07 3.2E-12 91.2 7.0 76 44-156 1-81 (847)
25 PTZ00305 NADH:ubiquinone oxido 98.1 7E-06 1.5E-10 71.7 6.3 54 40-96 62-121 (297)
26 PRK07860 NADH dehydrogenase su 97.9 1.9E-05 4.1E-10 76.5 6.5 50 42-96 2-56 (797)
27 PRK12814 putative NADPH-depend 97.9 1.6E-05 3.5E-10 75.2 5.8 48 44-96 3-55 (652)
28 PRK08493 NADH dehydrogenase su 97.9 2E-05 4.4E-10 76.9 5.8 48 44-96 1-53 (819)
29 PRK06259 succinate dehydrogena 97.8 2.4E-05 5.1E-10 71.4 5.2 60 57-156 23-88 (486)
30 PRK09129 NADH dehydrogenase su 97.8 3.2E-05 6.9E-10 74.4 6.3 48 44-96 1-53 (776)
31 TIGR01973 NuoG NADH-quinone ox 97.7 6.5E-05 1.4E-09 70.4 5.7 42 53-96 4-50 (603)
32 COG1034 NuoG NADH dehydrogenas 97.7 6.1E-05 1.3E-09 72.4 5.6 50 44-98 1-55 (693)
33 PRK09130 NADH dehydrogenase su 97.7 7.9E-05 1.7E-09 71.3 6.3 49 44-97 1-54 (687)
34 PRK09908 xanthine dehydrogenas 97.6 0.00018 3.8E-09 57.9 6.3 50 45-96 7-57 (159)
35 PF13085 Fer2_3: 2Fe-2S iron-s 97.5 0.00013 2.8E-09 55.3 4.6 40 57-98 21-66 (110)
36 PRK12577 succinate dehydrogena 97.5 0.00033 7.2E-09 61.6 7.3 40 56-96 20-65 (329)
37 PRK13552 frdB fumarate reducta 97.5 0.00018 3.9E-09 60.8 4.9 41 56-98 25-71 (239)
38 PRK08640 sdhB succinate dehydr 97.4 0.00022 4.9E-09 60.6 4.7 41 56-98 24-77 (249)
39 COG3383 Uncharacterized anaero 97.2 0.00047 1E-08 67.1 5.3 51 41-96 2-57 (978)
40 PRK12385 fumarate reductase ir 97.2 0.00047 1E-08 58.4 4.7 39 57-96 27-71 (244)
41 PRK11433 aldehyde oxidoreducta 97.1 0.0016 3.5E-08 54.8 6.6 51 45-98 50-102 (217)
42 PLN00129 succinate dehydrogena 97.1 0.0011 2.3E-08 57.6 5.4 40 57-98 64-110 (276)
43 PRK07570 succinate dehydrogena 97.0 0.0012 2.6E-08 56.4 4.8 40 57-98 22-72 (250)
44 TIGR03193 4hydroxCoAred 4-hydr 96.9 0.002 4.3E-08 51.3 5.5 44 52-96 6-51 (148)
45 TIGR03198 pucE xanthine dehydr 96.7 0.0046 1E-07 49.3 6.3 45 52-97 8-54 (151)
46 PRK12386 fumarate reductase ir 96.6 0.0054 1.2E-07 52.5 6.3 40 56-96 21-66 (251)
47 COG0479 FrdB Succinate dehydro 96.6 0.0028 6.2E-08 53.9 4.5 39 57-96 22-66 (234)
48 PRK12576 succinate dehydrogena 96.5 0.009 2E-07 51.6 6.9 41 56-98 26-72 (279)
49 TIGR00384 dhsB succinate dehyd 96.3 0.0038 8.2E-08 51.7 3.4 39 57-96 17-61 (220)
50 PRK05950 sdhB succinate dehydr 96.2 0.0098 2.1E-07 49.7 5.3 39 57-96 20-65 (232)
51 PRK12575 succinate dehydrogena 96.2 0.0043 9.3E-08 52.5 3.1 39 57-96 25-69 (235)
52 COG2080 CoxS Aerobic-type carb 96.2 0.016 3.4E-07 46.7 6.1 50 46-97 3-54 (156)
53 PRK09800 putative hypoxanthine 95.4 0.029 6.2E-07 56.1 6.0 49 47-96 3-52 (956)
54 TIGR02963 xanthine_xdhA xanthi 95.2 0.025 5.5E-07 52.2 4.6 44 52-96 5-51 (467)
55 TIGR01372 soxA sarcosine oxida 95.1 0.099 2.2E-06 52.1 8.5 72 47-156 13-95 (985)
56 TIGR03313 Se_sel_red_Mo probab 94.3 0.068 1.5E-06 53.4 5.2 43 53-96 4-48 (951)
57 KOG2282|consensus 94.0 0.098 2.1E-06 49.6 5.3 56 37-98 26-86 (708)
58 PLN00192 aldehyde oxidase 92.4 0.22 4.7E-06 51.6 5.4 48 47-96 6-56 (1344)
59 TIGR02969 mam_aldehyde_ox alde 92.3 0.18 4E-06 52.0 4.8 48 47-96 3-53 (1330)
60 TIGR03311 Se_dep_Molyb_1 selen 91.1 0.36 7.8E-06 47.7 5.2 41 53-96 6-48 (848)
61 PF02196 RBD: Raf-like Ras-bin 76.7 5.3 0.00012 27.6 4.2 26 45-72 3-28 (71)
62 cd01760 RBD Ubiquitin-like dom 75.5 6.1 0.00013 27.6 4.2 24 49-72 4-27 (72)
63 smart00455 RBD Raf-like Ras-bi 71.7 8.9 0.00019 26.5 4.3 23 50-72 5-27 (70)
64 cd06221 sulfite_reductase_like 68.6 3.4 7.5E-05 34.3 2.0 30 65-94 203-240 (253)
65 PRK00054 dihydroorotate dehydr 67.1 4.6 9.9E-05 33.4 2.4 32 66-98 195-232 (250)
66 PF02824 TGS: TGS domain; Int 66.1 11 0.00024 24.9 3.7 32 49-82 3-34 (60)
67 cd01791 Ubl5 UBL5 ubiquitin-li 65.2 14 0.00031 25.4 4.3 35 44-78 1-39 (73)
68 COG4630 XdhA Xanthine dehydrog 64.9 17 0.00037 33.8 5.7 51 44-96 6-59 (493)
69 PLN02906 xanthine dehydrogenas 63.4 7.6 0.00016 40.5 3.6 32 64-96 1-33 (1319)
70 cd06218 DHOD_e_trans FAD/NAD b 62.3 9 0.0002 31.7 3.3 33 65-97 193-230 (246)
71 PF03658 Ub-RnfH: RnfH family 58.3 13 0.00029 26.9 3.2 33 45-77 3-36 (84)
72 cd06220 DHOD_e_trans_like2 FAD 58.0 8.7 0.00019 31.3 2.5 31 65-96 180-216 (233)
73 TIGR02911 sulfite_red_B sulfit 56.9 7.6 0.00017 32.6 2.0 29 66-94 204-240 (261)
74 PRK08364 sulfur carrier protei 55.7 28 0.0006 23.6 4.3 35 43-78 3-37 (70)
75 cd06219 DHOD_e_trans_like1 FAD 54.0 13 0.00028 30.7 2.9 29 66-95 194-228 (248)
76 cd01816 Raf_RBD Ubiquitin doma 53.7 19 0.00042 25.6 3.3 40 52-97 7-46 (74)
77 PF03990 DUF348: Domain of unk 51.8 39 0.00084 20.8 4.2 30 47-78 2-31 (43)
78 PRK08345 cytochrome-c3 hydroge 49.2 11 0.00025 32.0 1.9 39 59-98 217-266 (289)
79 PF11470 TUG-UBL1: GLUT4 regul 49.2 19 0.00042 24.7 2.7 24 50-73 2-25 (65)
80 PRK05659 sulfur carrier protei 48.1 32 0.00069 22.6 3.6 24 53-78 6-29 (66)
81 PRK01777 hypothetical protein; 47.3 55 0.0012 24.0 5.0 23 57-79 19-41 (95)
82 cd01817 RGS12_RBD Ubiquitin do 46.0 38 0.00082 24.0 3.8 38 51-98 6-47 (73)
83 PRK08221 anaerobic sulfite red 43.8 15 0.00033 30.8 1.8 28 66-94 206-242 (263)
84 PRK06222 ferredoxin-NADP(+) re 43.6 22 0.00048 30.1 2.8 30 66-96 195-230 (281)
85 KOG0430|consensus 42.8 41 0.00089 35.1 4.9 45 52-97 7-54 (1257)
86 cd01802 AN1_N ubiquitin-like d 41.2 1.4E+02 0.0031 21.8 7.1 58 8-78 4-65 (103)
87 PF10418 DHODB_Fe-S_bind: Iron 40.1 20 0.00044 22.3 1.5 17 81-98 5-21 (40)
88 PRK06437 hypothetical protein; 39.9 61 0.0013 21.9 4.0 26 53-78 9-34 (67)
89 cd01818 TIAM1_RBD Ubiquitin do 39.7 44 0.00096 24.0 3.4 28 51-78 6-37 (77)
90 COG1683 Uncharacterized conser 39.1 10 0.00022 30.6 0.0 34 65-98 89-122 (156)
91 PRK07440 hypothetical protein; 38.9 64 0.0014 22.0 4.0 30 44-78 4-33 (70)
92 cd01763 Sumo Small ubiquitin-r 38.2 1.3E+02 0.0028 21.0 5.7 35 43-77 10-48 (87)
93 cd01787 GRB7_RA RA (RAS-associ 37.1 86 0.0019 22.8 4.6 27 47-73 5-31 (85)
94 PF10531 SLBB: SLBB domain; I 36.3 67 0.0015 20.8 3.7 26 55-80 10-35 (59)
95 cd01809 Scythe_N Ubiquitin-lik 35.4 80 0.0017 20.4 4.0 25 46-70 2-26 (72)
96 TIGR02899 spore_safA spore coa 34.0 24 0.00053 20.4 1.2 18 62-79 2-19 (44)
97 cd01806 Nedd8 Nebb8-like ubiq 32.4 94 0.002 20.3 4.0 25 46-70 2-26 (76)
98 PF02762 Cbl_N3: CBL proto-onc 32.3 77 0.0017 23.0 3.6 37 24-73 31-67 (86)
99 PF01476 LysM: LysM domain; I 32.1 47 0.001 19.6 2.2 19 60-78 2-20 (44)
100 cd00118 LysM Lysin domain, fou 30.3 56 0.0012 17.9 2.3 20 59-78 3-22 (46)
101 PRK12778 putative bifunctional 30.1 43 0.00094 32.4 2.7 29 66-95 195-229 (752)
102 KOG3049|consensus 30.0 53 0.0012 28.4 2.9 38 58-96 69-113 (288)
103 PRK06083 sulfur carrier protei 29.7 1.1E+02 0.0024 21.8 4.2 33 41-78 15-47 (84)
104 cd01810 ISG15_repeat2 ISG15 ub 29.2 1.2E+02 0.0025 20.3 4.1 31 47-77 1-35 (74)
105 PRK05863 sulfur carrier protei 28.4 1.2E+02 0.0025 20.2 3.9 24 53-78 6-29 (65)
106 PF01835 A2M_N: MG2 domain; I 28.2 1.5E+02 0.0033 20.5 4.7 41 12-56 9-49 (99)
107 cd01805 RAD23_N Ubiquitin-like 27.3 1.3E+02 0.0028 19.9 4.0 25 46-70 2-26 (77)
108 cd01807 GDX_N ubiquitin-like d 27.1 1.3E+02 0.0028 20.0 4.0 25 46-70 2-26 (74)
109 cd01803 Ubiquitin Ubiquitin. U 26.7 1.4E+02 0.003 19.5 4.0 25 46-70 2-26 (76)
110 PTZ00044 ubiquitin; Provisiona 26.4 1.4E+02 0.003 19.7 4.1 25 46-70 2-26 (76)
111 cd01804 midnolin_N Ubiquitin-l 26.3 1.5E+02 0.0033 20.2 4.3 26 45-70 2-27 (78)
112 PRK06944 sulfur carrier protei 25.9 1.1E+02 0.0024 19.8 3.4 23 53-77 6-28 (65)
113 PF11976 Rad60-SLD: Ubiquitin- 25.5 1.1E+02 0.0025 20.0 3.5 34 45-78 1-38 (72)
114 COG2104 ThiS Sulfur transfer p 24.7 1.4E+02 0.003 20.6 3.8 24 53-78 8-31 (68)
115 cd01792 ISG15_repeat1 ISG15 ub 24.7 1.5E+02 0.0032 20.3 4.0 26 45-70 3-28 (80)
116 TIGR00364 exsB protein. This p 24.5 57 0.0012 26.0 2.1 26 66-91 163-195 (201)
117 cd01995 ExsB ExsB is a transcr 24.4 60 0.0013 24.9 2.2 28 65-92 127-158 (169)
118 cd01790 Herp_N Homocysteine-re 23.9 1.7E+02 0.0038 20.7 4.3 26 45-70 2-29 (79)
119 smart00166 UBX Domain present 23.7 2.1E+02 0.0045 19.5 4.6 29 43-71 3-31 (80)
120 smart00257 LysM Lysin motif. 23.0 85 0.0018 16.8 2.1 20 59-78 2-21 (44)
121 PRK12775 putative trifunctiona 22.4 67 0.0014 32.7 2.5 30 66-96 195-230 (1006)
122 PRK14595 peptide deformylase; 22.4 1.9E+02 0.0042 23.1 4.7 50 23-77 86-135 (162)
123 cd01767 UBX UBX (ubiquitin reg 21.5 2.2E+02 0.0048 19.1 4.4 26 45-70 3-28 (77)
124 PF00789 UBX: UBX domain; Int 21.2 2.5E+02 0.0055 18.9 4.6 29 42-70 4-32 (82)
125 cd06192 DHOD_e_trans_like FAD/ 21.0 50 0.0011 26.9 1.1 30 66-96 192-229 (243)
126 PRK05802 hypothetical protein; 20.2 82 0.0018 27.5 2.4 30 66-96 268-305 (320)
127 cd01812 BAG1_N Ubiquitin-like 20.2 1.8E+02 0.0039 18.7 3.6 25 45-70 1-25 (71)
No 1
>KOG3309|consensus
Probab=100.00 E-value=2.3e-33 Score=221.50 Aligned_cols=143 Identities=52% Similarity=0.853 Sum_probs=128.8
Q ss_pred ecCcceeEEeeeeeccccccccCCCCCCCceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEE
Q psy1435 15 RPNNVHRIHTSVCTRHGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVY 94 (171)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~ 94 (171)
.+..-|+++|++-.--+ ++|..+++.+ |+|+|+++||+.+.+.+..|+|||++|.+|||++++.|+|.-+|.||||+
T Consensus 17 ~~~~~~~f~~~~t~~~~-~~~~~~~~e~--i~Itfv~~dG~~~~i~g~vGdtlLd~ah~n~idleGACEgslACSTCHVi 93 (159)
T KOG3309|consen 17 PFTRNHIFRTSSTSEFS-PSKGPRKVED--IKITFVDPDGEEIKIKGKVGDTLLDAAHENNLDLEGACEGSLACSTCHVI 93 (159)
T ss_pred ccccceeeccCcccccc-cccCCCCCce--EEEEEECCCCCEEEeeeecchHHHHHHHHcCCCccccccccccccceEEE
Confidence 34455666676655444 5666444444 99999999999999999999999999999999999999999999999999
Q ss_pred EecCCccCCCCCChHHHhhcccCCCCCCCeeeccccccCCCceeeeEEEecCCCceEEEeCCCcccccccCCCCCCC
Q psy1435 95 VKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKATRNFYVDGHTPKPH 171 (171)
Q Consensus 95 V~~g~~~~L~~~t~~E~~~L~~~~~~~~g~R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~~~~~~~~~~~~~~~~ 171 (171)
|.+.+++++++++++|.++|+.+..+.+.|| |+||+.++++||||+|+||...+|+++||+.||||
T Consensus 94 v~~~~yekl~ep~DeE~DmLDlA~gLt~tSR-----------LGCQI~l~keldG~~v~vP~atrn~~vd~~~~kph 159 (159)
T KOG3309|consen 94 VDEEYYEKLPEPEDEENDMLDLAFGLTETSR-----------LGCQIVLTKELDGMRVAVPEATRNFRVDGFVPKPH 159 (159)
T ss_pred EcHHHHhcCCCCcchHHHHHHhhhccccccc-----------cceEEEeccccCCcEEECccccccccccCCCCCCC
Confidence 9999999999999999999999888999999 99999999999999999999999999999999998
No 2
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=99.98 E-value=8.8e-32 Score=204.66 Aligned_cols=116 Identities=53% Similarity=0.953 Sum_probs=108.8
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEE-ecCCccCCCCCChHHHhhcccCCCCCCC
Q psy1435 45 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYV-KHEYLDALPPAEEKEDDLLDLAPFLKDN 123 (171)
Q Consensus 45 v~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V-~~g~~~~L~~~t~~E~~~L~~~~~~~~g 123 (171)
|+|+|++++|+++++++..|+|||++++++|+++++.|||+|.||+|||+| ..++.+.++++++.|.++|+.+.+..+|
T Consensus 1 ~~V~fi~~~G~~~~v~~~~G~tLl~a~~~~gi~i~~~CgG~g~C~tC~V~V~~~~~~~~l~~~~~~E~~~L~~~~~~~~~ 80 (117)
T PLN02593 1 ISVTFVDKDGEERTVKAPVGMSLLEAAHENDIELEGACEGSLACSTCHVIVMDEKVYNKLPEPTDEENDMLDLAFGLTET 80 (117)
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCcceeCCCEEEEecCccccCCCCCChHHHHHHhcccCCCCC
Confidence 589999999999999999999999999999999999999999999999999 4566788999999999999865667889
Q ss_pred eeeccccccCCCceeeeEEEecCCCceEEEeCCCcccccccCCCCCCC
Q psy1435 124 SRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKATRNFYVDGHTPKPH 171 (171)
Q Consensus 124 ~R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~~~~~~~~~~~~~~~~ 171 (171)
+| ||||+.+.++++|++|+||+...++..++|.||||
T Consensus 81 sR-----------LaCQ~~v~~~~~~~~v~ip~~~~~~~~~~~~~~~~ 117 (117)
T PLN02593 81 SR-----------LGCQVIAKPELDGMRLALPAATRNFAVDGHVPKPH 117 (117)
T ss_pred eE-----------ecceeEeecCCCCEEEEcCchhccccccCCCCCCC
Confidence 99 99999999999999999999999999999999998
No 3
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=99.95 E-value=8e-28 Score=189.17 Aligned_cols=119 Identities=31% Similarity=0.552 Sum_probs=106.5
Q ss_pred ccccccCCC-CCCCceEEEEEcCCCCEEEEEecCCchHHHHHHHC-CCCCcCCCCCCccccccEEEEecCCccCCCCCCh
Q psy1435 31 GEYEWQDPK-SEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRY-EIPMEGACEASLACTTCHVYVKHEYLDALPPAEE 108 (171)
Q Consensus 31 ~~~~~~~p~-~~~~mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~-gI~i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~ 108 (171)
|.+.+...+ ++.+.|+|+|++++|.++++++.+|+|||++++++ ++++++.|||.|+||+|||+|.+||+++++++++
T Consensus 21 ~~~~~~~~~~~~~g~v~I~~~~~dG~~~~v~~~~G~sLLeal~~~~~i~i~~~CGG~g~CgtC~V~V~~g~~~~l~~~~~ 100 (143)
T PTZ00490 21 GPLSTSRALYSTPGKVKVCVKKRDGTHCDVEVPVGMSLMHALRDVAKLDVEGTCNGCMQCATCHVYLSAASFKKLGGPSE 100 (143)
T ss_pred cceeeeeeeccCCCcEEEEEEcCCCCEEEEEECCCccHHHHHHHcCCCCccccCCCCCEeCCCEEEECCCccccCCCCCh
Confidence 455555444 45667999999999999999999999999999995 6899999999999999999999999999999999
Q ss_pred HHHhhcccCCCCCCCeeeccccccCCCceeeeEEEecCCCceEEEeCCCccc
Q psy1435 109 KEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKATRN 160 (171)
Q Consensus 109 ~E~~~L~~~~~~~~g~R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~~~~~ 160 (171)
.|.++|+.+.+..+|+| ||||+.+.++|||++|+||+...+
T Consensus 101 ~E~~~L~~~~~~~~gsR-----------LaCQi~v~~~ldgl~V~vp~~~~~ 141 (143)
T PTZ00490 101 EEEDVLAKALDVKETSR-----------LACQVDLTPEMDGLEVELPSYVTN 141 (143)
T ss_pred HHHHHhhccccCCCCcE-----------EeeeEEEecCCCCEEEEeCccccc
Confidence 99999997657889999 999999999999999999988764
No 4
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=99.86 E-value=2.1e-21 Score=145.71 Aligned_cols=95 Identities=41% Similarity=0.651 Sum_probs=81.9
Q ss_pred cCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEecCCccCCCCCChHHHhhcccCCCCCCCeeecccc
Q psy1435 51 DKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQN 130 (171)
Q Consensus 51 ~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~~~~~g~R~~~~~ 130 (171)
.+.|. ++++.+|+|||++|+++|+++++.|+|.|.||+|+|+|.+|. ..+++++..|.+.|+...++.+|+|
T Consensus 12 ~p~~~--~~~~~~g~tLL~a~~~~gi~i~~~CgG~G~CgtC~v~V~~G~-~~~~~~~~~e~~~L~~~~~~~~~~R----- 83 (110)
T TIGR02007 12 CPEGA--VVEAKPGETILDVALDNGIEIEHACEKSCACTTCHCIVREGF-DSLEEASEQEEDMLDKAWGLEPDSR----- 83 (110)
T ss_pred CCCCe--EEEECCCChHHHHHHHcCCCccccCCCCceeCCCEEEEeecc-ccCCCCCHHHHHHHhhccCCCCCcE-----
Confidence 46664 489999999999999999999999999999999999999984 6788888999999875446788999
Q ss_pred ccCCCceeeeEEEecCCCceEEEeCCCcccc
Q psy1435 131 VMYNSRLGCQIILTKELEGIEVTLPKATRNF 161 (171)
Q Consensus 131 ~~~~~RLACQ~~v~~dl~glvV~vp~~~~~~ 161 (171)
||||+.+.++ |++|++|..+.++
T Consensus 84 ------LaCq~~~~~~--dl~v~~~~~~~~~ 106 (110)
T TIGR02007 84 ------LSCQAVVADE--DLVVEIPKYTINH 106 (110)
T ss_pred ------EeeeEEEcCC--CEEEEECchhhhh
Confidence 9999999864 7999999766543
No 5
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=99.85 E-value=4.1e-21 Score=142.73 Aligned_cols=100 Identities=39% Similarity=0.572 Sum_probs=84.2
Q ss_pred ceEEEEEcCCCCE-EEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEecCCccCCCCCChHHHhhcccCCCCCC
Q psy1435 44 IVNITFIDKDGKR-REIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKD 122 (171)
Q Consensus 44 mv~Vtfv~~~G~~-~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~~~~~ 122 (171)
|.++.|+..+++. ..+.+..|+|||++|.++||++++.|+| |.||||||+|.+| ++.++++++.|.++|+ +....+
T Consensus 1 ~~~~~~v~~~~~~~~~~~~~~g~tiLe~a~~~gi~i~~~C~~-g~C~TC~v~v~~G-~~~v~~~~~~e~~~l~-~~~~~~ 77 (102)
T COG0633 1 MPKIAFVTIDGEGDVTEAVNEGETLLEAAERNGIPIEYACRG-GACGTCRVKVLEG-FDEVSPPEESEEDLLD-AAGLEG 77 (102)
T ss_pred CCceEEEeccCCcceEEeccCCcHHHHHHHHCCCcceecCCC-CccCccEEEEecC-cccCCCcchHHHHHHH-hhccCC
Confidence 4566777677643 3445555999999999999999999998 5999999999999 7889999999999998 456677
Q ss_pred CeeeccccccCCCceeeeEEEecCCCceEEEeCCC
Q psy1435 123 NSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKA 157 (171)
Q Consensus 123 g~R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~~ 157 (171)
++| |+||+++.++++..++.+|..
T Consensus 78 ~~r-----------L~Cq~~~~~d~~i~~~~~~~~ 101 (102)
T COG0633 78 NSR-----------LSCQCRVKGDLDIEVVEEPEY 101 (102)
T ss_pred CcE-----------EeeeeEECCCcceEEEeccCC
Confidence 899 999999999988888887754
No 6
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=99.77 E-value=1.4e-18 Score=127.56 Aligned_cols=94 Identities=21% Similarity=0.321 Sum_probs=76.0
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEecCCccCCCCCChHHHhhcccCCCCCCCe
Q psy1435 45 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNS 124 (171)
Q Consensus 45 v~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~~~~~g~ 124 (171)
.+|+|..++|..+++.+.+|+|||++|+++||++++.|+ +|.||+|+++|.+|.... .+...|+. .+.++|+
T Consensus 3 ~~v~~~~~~~~~~~~~~~~g~tLLda~~~~Gi~i~~~C~-~G~Cg~C~v~v~~G~~~~------~~~~~l~~-~~~~~g~ 74 (97)
T TIGR02008 3 YKVTLVNPDGGEETIECPDDQYILDAAEEAGIDLPYSCR-AGACSTCAGKVEEGTVDQ------SDQSFLDD-DQMEAGY 74 (97)
T ss_pred EEEEEEECCCCEEEEEECCCCcHHHHHHHcCCCCCcCCC-CccCCCCceEEEeCcEec------CccCCCCH-HHHhCCe
Confidence 567886688877889999999999999999999999999 599999999999996431 11122332 2356889
Q ss_pred eeccccccCCCceeeeEEEecCCCceEEEeCCCccc
Q psy1435 125 RLGCQNVMYNSRLGCQIILTKELEGIEVTLPKATRN 160 (171)
Q Consensus 125 R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~~~~~ 160 (171)
| |+||+.+.+| ++|++|...++
T Consensus 75 ~-----------LaC~~~~~~d---i~v~~~~~~~~ 96 (97)
T TIGR02008 75 V-----------LTCVAYPTSD---CTIETHKEEDL 96 (97)
T ss_pred E-----------EEeeCEECCC---eEEEecccccc
Confidence 9 9999999985 99999986654
No 7
>CHL00134 petF ferredoxin; Validated
Probab=99.73 E-value=1.1e-17 Score=123.51 Aligned_cols=94 Identities=20% Similarity=0.274 Sum_probs=75.3
Q ss_pred eEEEEEc-CCCCEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEecCCccCCCCCChHHHhhcccCCCCCCC
Q psy1435 45 VNITFID-KDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN 123 (171)
Q Consensus 45 v~Vtfv~-~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~~~~~g 123 (171)
++|+|.+ .+|..+.|++.+|+|||++|+++||++++.|+ .|.||+|+++|.+|.... .+...|+. .+.++|
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~tLL~a~~~~Gi~i~~~C~-~G~Cg~C~v~v~~G~v~~------~~~~~l~~-~e~~~g 75 (99)
T CHL00134 4 YKVTLLSEEEGIDVTIDCPDDVYILDAAEEQGIDLPYSCR-AGACSTCAGKVTEGTVDQ------SDQSFLDD-DQLEAG 75 (99)
T ss_pred EEEEEEecCCCCeEEEEECCCCcHHHHHHHcCCCCCcCCC-CccCCCCEEEEEeCcccc------CcccCCCH-HHHhCC
Confidence 5677754 26776789999999999999999999999999 699999999999996432 11122432 245689
Q ss_pred eeeccccccCCCceeeeEEEecCCCceEEEeCCCccc
Q psy1435 124 SRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKATRN 160 (171)
Q Consensus 124 ~R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~~~~~ 160 (171)
++ |+||+++.+| ++|++|..+.+
T Consensus 76 ~~-----------L~C~~~~~~d---~~i~~~~~~~~ 98 (99)
T CHL00134 76 FV-----------LTCVAYPTSD---CTILTHQEEEL 98 (99)
T ss_pred eE-----------EEeeCEECCC---eEEEecccccc
Confidence 99 9999999986 99999987764
No 8
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.70 E-value=6.9e-17 Score=143.75 Aligned_cols=96 Identities=21% Similarity=0.288 Sum_probs=80.0
Q ss_pred CceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEecCCccCCCCCChHHHhhcccCCCCCC
Q psy1435 43 EIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKD 122 (171)
Q Consensus 43 ~mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~~~~~ 122 (171)
+|.+|+++..+|..+++++.+|+|||++|+++|+++++.|+|+|.||+|+|+|.+|.. .++..|...|+. .+.++
T Consensus 28 ~~~~v~v~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~G~~----~~~~~~~~~L~~-~~~~~ 102 (405)
T TIGR01941 28 SSGDITIGINDDEEKSITVPAGGKLLNTLASNGIFISSACGGGGTCGQCRVRVVEGGG----EILPTELSHFSK-REAKE 102 (405)
T ss_pred ccccEEEEEcCCCceEEEECCCChHHHHHHHcCCCCcccCCCccEeCCCEEEEccCCc----CCChhhhhhcCH-hHhcC
Confidence 3455666656777788999999999999999999999999988999999999999863 245566777775 46788
Q ss_pred CeeeccccccCCCceeeeEEEecCCCceEEEeCCC
Q psy1435 123 NSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKA 157 (171)
Q Consensus 123 g~R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~~ 157 (171)
|+| ||||+.+.+| ++|+++..
T Consensus 103 g~r-----------LaCq~~~~~d---~~i~~~~~ 123 (405)
T TIGR01941 103 GWR-----------LSCQVKVKQD---MSIEIPEE 123 (405)
T ss_pred CcE-----------EEeeCEECCC---EEEEECcc
Confidence 999 9999999985 99999844
No 9
>PTZ00038 ferredoxin; Provisional
Probab=99.69 E-value=9.2e-17 Score=131.79 Aligned_cols=93 Identities=23% Similarity=0.332 Sum_probs=76.9
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEecCCccCCCCCChHHHhhcccCCCCCCCe
Q psy1435 45 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNS 124 (171)
Q Consensus 45 v~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~~~~~g~ 124 (171)
++|+|..++|. +++++.+|+||||+|+++||++++.|++ |.||+|+++|.+|.++. .|...|+. .+.++|+
T Consensus 96 ~~Vt~~~~~g~-~~~~v~~geTILdAae~aGI~lp~sCr~-G~CGtCkvrV~~GeV~~------~e~~~Ls~-ee~~~G~ 166 (191)
T PTZ00038 96 YNITLQTPDGE-KVIECDEDEYILDAAERQGVELPYSCRG-GSCSTCAAKLLEGEVDN------EDQSYLDD-EQLKKGY 166 (191)
T ss_pred EEEEEEeCCCc-EEEEeCCCCcHHHHHHHcCCCCCcCCCC-ccCCCCEeEEeeccccc------CccccCCH-HHhcCCE
Confidence 78888766664 5699999999999999999999999996 99999999999996432 33344553 3567899
Q ss_pred eeccccccCCCceeeeEEEecCCCceEEEeCCCccc
Q psy1435 125 RLGCQNVMYNSRLGCQIILTKELEGIEVTLPKATRN 160 (171)
Q Consensus 125 R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~~~~~ 160 (171)
| |+||+++.+| ++|++|...+.
T Consensus 167 ~-----------LaCqa~p~sD---i~Ie~p~e~~~ 188 (191)
T PTZ00038 167 C-----------LLCTCYPKSD---CTIETHKEDEL 188 (191)
T ss_pred E-----------EEeeCEECCC---eEEecCChHHh
Confidence 9 9999999985 99999987653
No 10
>PLN03136 Ferredoxin; Provisional
Probab=99.66 E-value=3.4e-16 Score=123.87 Aligned_cols=93 Identities=20% Similarity=0.343 Sum_probs=75.8
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEecCCccCCCCCChHHHhhcccCCCCCCC
Q psy1435 44 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN 123 (171)
Q Consensus 44 mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~~~~~g 123 (171)
.++|+|++++| .+++++.+|++|||+|+++||++++.|+ .|.||+|+++|.+|.++. .+...|+. .+.++|
T Consensus 54 ~~~V~l~~~~~-~~~~~~~~g~tILdAa~~~Gi~lp~sCr-~G~CGtC~~~l~~G~V~~------~~~~~L~~-~e~~~G 124 (148)
T PLN03136 54 TYKVKFITPEG-EQEVECEEDVYVLDAAEEAGIDLPYSCR-AGSCSSCAGKVVSGSIDQ------SDQSFLDD-EQISEG 124 (148)
T ss_pred eEEEEEecCCC-cEEEEeCCCCcHHHHHHHcCCCCCcCCC-CccCCCCEEEEecCcCcc------CcccCCCH-HHhcCC
Confidence 47888876666 3569999999999999999999999999 699999999999997542 22233553 356789
Q ss_pred eeeccccccCCCceeeeEEEecCCCceEEEeCCCcc
Q psy1435 124 SRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKATR 159 (171)
Q Consensus 124 ~R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~~~~ 159 (171)
+| |+||+++.+| ++|+++....
T Consensus 125 ~~-----------LaC~a~p~sD---~~Ie~~~e~~ 146 (148)
T PLN03136 125 YV-----------LTCVAYPTSD---VVIETHKEEA 146 (148)
T ss_pred EE-----------EEeEeEECCC---cEEecCChhh
Confidence 99 9999999986 9999987654
No 11
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=99.62 E-value=3.1e-15 Score=107.24 Aligned_cols=83 Identities=16% Similarity=0.293 Sum_probs=65.5
Q ss_pred ceEEEEEcCCCCEEEEEecC-CchHHHHHHHCCCCCcCCCCCCccccccEEEEecCCccCCCCCChHHHhhcccCCCCCC
Q psy1435 44 IVNITFIDKDGKRREIKGKV-GDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKD 122 (171)
Q Consensus 44 mv~Vtfv~~~G~~~~v~~~~-G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~~~~~ 122 (171)
|.+|+|. ..|.. +.+.+ |+|||++|+++|+++++.|+ .|.||+|++++.+|.++.... .. .+.++
T Consensus 1 ~~~v~~~-~~~~~--~~~~~~~~tlL~a~~~~gi~~p~~Cr-~G~Cg~C~~~~~sG~v~~~~~-~~---------~~~~~ 66 (84)
T PRK10713 1 MARVTLR-ITGTQ--LLCQDEHPSLLAALESHNVAVEYQCR-EGYCGSCRTRLVAGQVDWIAE-PL---------AFIQP 66 (84)
T ss_pred CCEEEEE-eCCcE--EEecCCCCcHHHHHHHcCCCCCCCCC-CeECCCCEeEEEeCeEecCCC-cc---------chhhC
Confidence 6678875 56654 88876 59999999999999999999 599999999999997643211 11 13467
Q ss_pred CeeeccccccCCCceeeeEEEecCCCceEEEe
Q psy1435 123 NSRLGCQNVMYNSRLGCQIILTKELEGIEVTL 154 (171)
Q Consensus 123 g~R~~~~~~~~~~RLACQ~~v~~dl~glvV~v 154 (171)
|++ |+||+++.+| ++|++
T Consensus 67 g~~-----------L~C~~~p~sd---~~ie~ 84 (84)
T PRK10713 67 GEI-----------LPCCCRAKGD---IEIEM 84 (84)
T ss_pred CEE-----------EEeeCEECCC---EEEeC
Confidence 889 9999999986 88874
No 12
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.61 E-value=3.5e-15 Score=132.97 Aligned_cols=97 Identities=22% Similarity=0.304 Sum_probs=77.4
Q ss_pred CCCCceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEecCCccCCCCCChHHHhhcccCCC
Q psy1435 40 SEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPF 119 (171)
Q Consensus 40 ~~~~mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~~ 119 (171)
++-.+++|++. .+..+++++.+|+|||++++++|+++++.|+|+|.||+|+|+|.+|+.+ +...|...|+. .+
T Consensus 31 ~~~~~~~i~~~--~~~~~~~~~~~g~tLL~a~~~~gi~i~~~C~g~G~CgtC~v~v~~G~~~----~~~~e~~~l~~-~e 103 (409)
T PRK05464 31 VPSGDVTIKIN--GDPEKTITVPAGGKLLGALASNGIFLSSACGGGGSCGQCRVKVKEGGGD----ILPTELSHISK-RE 103 (409)
T ss_pred ccCccEEEEEc--CCCcEEEEECCCchHHHHHHHcCCCcccCCCCccEeCCCEEEEecCCcC----CChhhhhhcCH-hh
Confidence 44455777763 2213569999999999999999999999999889999999999999632 34556667764 45
Q ss_pred CCCCeeeccccccCCCceeeeEEEecCCCceEEEeCCC
Q psy1435 120 LKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKA 157 (171)
Q Consensus 120 ~~~g~R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~~ 157 (171)
.++|+| ||||+.+.+| ++|+++..
T Consensus 104 ~~~g~r-----------LaCq~~~~~d---~~ie~~~~ 127 (409)
T PRK05464 104 AKEGWR-----------LSCQVKVKQD---MKIEVPEE 127 (409)
T ss_pred ccCCcE-----------EEeeCEECCC---EEEEECcc
Confidence 778999 9999999986 99998743
No 13
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=99.61 E-value=2.2e-15 Score=105.29 Aligned_cols=83 Identities=29% Similarity=0.384 Sum_probs=62.7
Q ss_pred EEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEecCCccCCCCCChHHHhhcccCCCCCCCeeec
Q psy1435 48 TFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLG 127 (171)
Q Consensus 48 tfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~~~~~g~R~~ 127 (171)
+|. ..|+.+++.+.+|+|||++++++|+++++.|++ |.||+|+|+|.+|.....++ ..+. ..+..+++|
T Consensus 2 ~~~-~~~~~~~~~~~~g~~ll~al~~~g~~~~~~C~~-g~Cg~C~v~v~~G~~~~~~~------~~~~-~~~~~~~~~-- 70 (84)
T cd00207 2 TIN-VPGSGVEVEVPEGETLLDAAREAGIDIPYSCRA-GACGTCKVEVVEGEVDQSDP------SLLD-EEEAEGGYV-- 70 (84)
T ss_pred EEe-cCCCCEEEEECCCCcHHHHHHHcCCCcccCCCC-cCCcCCEEEEeeCccccCcc------cCCC-HHHHhCCeE--
Confidence 444 235556799999999999999999999999997 79999999999996432221 2222 123457788
Q ss_pred cccccCCCceeeeEEEecCCCceEEE
Q psy1435 128 CQNVMYNSRLGCQIILTKELEGIEVT 153 (171)
Q Consensus 128 ~~~~~~~~RLACQ~~v~~dl~glvV~ 153 (171)
||||+.+.+| ++|+
T Consensus 71 ---------LaC~~~~~~~---i~v~ 84 (84)
T cd00207 71 ---------LACQTRVTDG---LVIE 84 (84)
T ss_pred ---------EEEeCeeCCC---cEEC
Confidence 9999999775 7763
No 14
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=99.57 E-value=2.8e-15 Score=137.31 Aligned_cols=91 Identities=24% Similarity=0.476 Sum_probs=77.9
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEecCCccCCCCCChHHHhhcccCCCCCCC
Q psy1435 44 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN 123 (171)
Q Consensus 44 mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~~~~~g 123 (171)
|+.|||. |.|++ .+ .+|+|+|++|++.|+.+.+.|||+|+||+|+|.|.+|. .++...++-|+.. . ..|
T Consensus 1 ~p~v~f~-psgkr--~~-~~g~~il~aar~~gv~i~s~cggk~~cgkc~v~v~~g~-~~i~s~~dh~k~~-~-----~~g 69 (614)
T COG3894 1 MPLVTFM-PSGKR--GE-DEGTTILDAARRLGVYIRSVCGGKGTCGKCQVVVQEGN-HKIVSSTDHEKYL-R-----ERG 69 (614)
T ss_pred CceeEee-cCCCc--CC-CCCchHHHHHHhhCceEeeecCCCccccceEEEEEeCC-ceeccchhHHHHH-H-----hhc
Confidence 6789987 99988 66 99999999999999999999999999999999999996 4555556665543 2 248
Q ss_pred eeeccccccCCCceeeeEEEecCCCceEEEeCCCcc
Q psy1435 124 SRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKATR 159 (171)
Q Consensus 124 ~R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~~~~ 159 (171)
+| ||||+++.+| ++|.||++++
T Consensus 70 ~r-----------lac~~~v~gd---~~i~ip~es~ 91 (614)
T COG3894 70 YR-----------LACQAQVLGD---LVIFIPPESR 91 (614)
T ss_pred ee-----------eeeehhhcCc---eEEEcCchhh
Confidence 99 9999999985 9999999987
No 15
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.56 E-value=2.7e-15 Score=130.57 Aligned_cols=111 Identities=17% Similarity=0.224 Sum_probs=86.2
Q ss_pred cccccccCCC-CCCCceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEecCCccCCCCCCh
Q psy1435 30 HGEYEWQDPK-SEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEE 108 (171)
Q Consensus 30 ~~~~~~~~p~-~~~~mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~ 108 (171)
++.+-|+..+ +...-++|.+. +...+++.+++|.+||.++..+||.+++.|||.|+||+|+|+|.+|.-+ +-+
T Consensus 21 v~vIL~ak~klv~~gd~ti~IN--~d~e~~~t~~aG~kLL~~L~~~gifi~SaCGGggsC~QCkv~v~~ggge----~Lp 94 (410)
T COG2871 21 VAVILFAKSKLVKVGDITIKIN--GDPEKTKTVPAGGKLLGALASSGIFISSACGGGGSCGQCKVRVKKGGGE----ILP 94 (410)
T ss_pred HHHHHHHHhheeecCceEEEeC--CChhhceecCCchhHHHHHHhCCcccccCCCCCccccccEEEEecCCCc----cCc
Confidence 3344444444 44455666653 3334678899999999999999999999999999999999999998633 345
Q ss_pred HHHhhcccCCCCCCCeeeccccccCCCceeeeEEEecCCCceEEEeCCCcccc
Q psy1435 109 KEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKATRNF 161 (171)
Q Consensus 109 ~E~~~L~~~~~~~~g~R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~~~~~~ 161 (171)
.|+..++. .+.++|+| ||||+.+..| |.+++|+...+.
T Consensus 95 Te~sh~sk-rea~eG~R-----------LsCQ~~Vk~d---m~levpEe~fgv 132 (410)
T COG2871 95 TELSHISK-REAKEGWR-----------LSCQVNVKHD---MDLEVPEEVFGV 132 (410)
T ss_pred chhhhhhh-hhhhccce-----------EEEEeccccc---ceeechHHhcCc
Confidence 66777664 46789999 9999999996 999999887655
No 16
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=99.55 E-value=8.4e-15 Score=101.83 Aligned_cols=48 Identities=25% Similarity=0.405 Sum_probs=44.1
Q ss_pred CCCCEEEEEecCCch-HHHHHHHC-CCCCcCCCCCCccccccEEEEecCCc
Q psy1435 52 KDGKRREIKGKVGDN-VLYLAHRY-EIPMEGACEASLACTTCHVYVKHEYL 100 (171)
Q Consensus 52 ~~G~~~~v~~~~G~t-LLdaa~~~-gI~i~~~CgG~G~CgtC~V~V~~g~~ 100 (171)
.+|+.++|++.+|+| ||++|+++ |+++++.|++. .||+|+|+|.+|+.
T Consensus 3 i~g~~~~~~~~~~~~~ll~~~~~~~gi~i~~~C~~g-~Cg~C~v~v~~G~~ 52 (78)
T PF00111_consen 3 INGKGVTVEVPPGETLLLDALERAGGIGIPYSCGGG-GCGTCRVRVLEGEV 52 (78)
T ss_dssp TTTEEEEEEEETTSBBHHHHHHHTTTTTSTTSSSSS-SSSTTEEEEEESEE
T ss_pred ECCeEEEEEeCCCccHHHHHHHHcCCCCcccCCCCC-ccCCcEEEEeeCcc
Confidence 578888999999999 99999999 99999999984 59999999999964
No 17
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.53 E-value=1.8e-14 Score=124.61 Aligned_cols=92 Identities=15% Similarity=0.237 Sum_probs=71.9
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEecCCccCCCCCChHHHhhcccCCCCCCCe
Q psy1435 45 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNS 124 (171)
Q Consensus 45 v~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~~~~~g~ 124 (171)
.+|+|. +.| +++++.+|+|||++++++||++++.|+ .|.||+|++++.+|..+. ...+...|+. .+.++|+
T Consensus 3 ~~v~~~-~~~--~~~~~~~g~tlL~a~~~~gi~~~~~C~-~G~Cg~C~~~~~~G~~~~----~~~~~~~l~~-~~~~~g~ 73 (339)
T PRK07609 3 FQVTLQ-PSG--RQFTAEPDETILDAALRQGIHLPYGCK-NGACGSCKGRLLEGEVEQ----GPHQASALSG-EERAAGE 73 (339)
T ss_pred EEEEEe-cCC--eEEEeCCCCcHHHHHHHcCCCCCCCCC-CeECCCCEEEEEECcEec----ccccccCCCH-HHHhCCc
Confidence 467775 555 458999999999999999999999998 699999999999997532 2222334443 2446788
Q ss_pred eeccccccCCCceeeeEEEecCCCceEEEeCCCcc
Q psy1435 125 RLGCQNVMYNSRLGCQIILTKELEGIEVTLPKATR 159 (171)
Q Consensus 125 R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~~~~ 159 (171)
| |+||+++.+| ++|+++....
T Consensus 74 ~-----------L~C~~~~~~d---~~i~~~~~~~ 94 (339)
T PRK07609 74 A-----------LTCCAKPLSD---LVLEAREVPA 94 (339)
T ss_pred E-----------EEeeCEECCC---EEEEeccccc
Confidence 9 9999999985 9999986544
No 18
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.53 E-value=2.6e-14 Score=124.45 Aligned_cols=93 Identities=18% Similarity=0.215 Sum_probs=72.7
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEecCCccCCCCCChHHHhhcccCCCCCCCee
Q psy1435 46 NITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSR 125 (171)
Q Consensus 46 ~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~~~~~g~R 125 (171)
+|++...+|+...+++.+|+||||+|+++|+.+++.|+ .|.||+|++++.+|..+. ...+...|.. .+.++|++
T Consensus 4 ~v~~~~~~~~~~~~~~~~g~tlL~a~~~~g~~~p~~C~-~G~Cg~C~~~~~~G~~~~----~~~~~~~l~~-~~~~~g~~ 77 (340)
T PRK11872 4 KVALSFADGKTLFFPVGKDELLLDAALRNGINLPLDCR-EGVCGTCQGRCESGIYSQ----DYVDEDALSE-RDLAQRKM 77 (340)
T ss_pred EEEEEecCCcEEEEEeCCCCcHHHHHHHcCCCCcCCCC-CeECCCCEEEEEeCcccc----CccccccCCH-HHHhCCeE
Confidence 45554467888788999999999999999999999999 599999999999996431 1222333443 24568899
Q ss_pred eccccccCCCceeeeEEEecCCCceEEEeCCCc
Q psy1435 126 LGCQNVMYNSRLGCQIILTKELEGIEVTLPKAT 158 (171)
Q Consensus 126 ~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~~~ 158 (171)
|+||+++.+| ++|+++...
T Consensus 78 -----------L~C~~~~~~d---~~i~~~~~~ 96 (340)
T PRK11872 78 -----------LACQTRVKSD---AAFYFDFDS 96 (340)
T ss_pred -----------EEeeCEECCc---eEEEecCcc
Confidence 9999999986 999987543
No 19
>PRK05713 hypothetical protein; Provisional
Probab=99.48 E-value=6.2e-14 Score=120.56 Aligned_cols=85 Identities=16% Similarity=0.241 Sum_probs=66.4
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEecCCccCCCCCChHHHhhcccCCCCCCC
Q psy1435 44 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN 123 (171)
Q Consensus 44 mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~~~~~g 123 (171)
|.+++ ++|+ +|++.+|+||||+|+++||++++.|++ |.||+|+|+|.+|..+. .....|+. .+.++|
T Consensus 1 ~~~~~---~~~~--~~~~~~g~tlL~a~~~~gi~~~~~C~~-G~Cg~C~~~~~~G~~~~------~~~~~l~~-~~~~~g 67 (312)
T PRK05713 1 MPELR---VGER--RWSVPAGSNLLDALNAAGVAVPYSCRA-GSCHACLVRCLQGEPED------ALPEALAA-EKREQG 67 (312)
T ss_pred CCcEe---cCCe--EEEECCCCcHHHHHHHcCCCCCcCCCC-cCCCCCeEEEEeCcccc------CccccCCH-HHHhCC
Confidence 44455 3564 599999999999999999999999994 99999999999996431 11123332 245678
Q ss_pred eeeccccccCCCceeeeEEEecCCCceEEEeC
Q psy1435 124 SRLGCQNVMYNSRLGCQIILTKELEGIEVTLP 155 (171)
Q Consensus 124 ~R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp 155 (171)
+| ||||+.+.+| ++|+++
T Consensus 68 ~~-----------L~C~~~~~~d---~~i~~~ 85 (312)
T PRK05713 68 WR-----------LACQCRVVGD---LRVEVF 85 (312)
T ss_pred eE-----------EEeECEECCc---eEEEec
Confidence 89 9999999985 999987
No 20
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.41 E-value=5.3e-13 Score=115.94 Aligned_cols=90 Identities=22% Similarity=0.287 Sum_probs=69.7
Q ss_pred CceEEEEEcCCCCEEE-EEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEecCCccCCCCCChHHHhhcccCCCCC
Q psy1435 43 EIVNITFIDKDGKRRE-IKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLK 121 (171)
Q Consensus 43 ~mv~Vtfv~~~G~~~~-v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~~~~ 121 (171)
....|+|. .+|+.+. +.+.+|+|||++|+++|+++++.|++ |.||+|++++.+|.... .+...|+. .+.+
T Consensus 261 ~~~~v~~~-~~~~~~~~~~~~~~~slL~~~~~~gi~~~~~C~~-G~Cg~C~~~~~~G~v~~------~~~~~l~~-~~~~ 331 (352)
T TIGR02160 261 DVSKVTVT-LDGRSTETSSLSRDESVLDAALRARPDLPFACKG-GVCGTCRAKVLEGKVDM------ERNYALEP-DEVD 331 (352)
T ss_pred CceEEEEE-ECCceEEEEecCCCCcHHHHHHHcCCCCcCCCCC-ccCCCCEEEEecccccc------ccccCCCH-HHHh
Confidence 34677775 5777654 57889999999999999999999996 99999999999996432 12223443 2456
Q ss_pred CCeeeccccccCCCceeeeEEEecCCCceEEEe
Q psy1435 122 DNSRLGCQNVMYNSRLGCQIILTKELEGIEVTL 154 (171)
Q Consensus 122 ~g~R~~~~~~~~~~RLACQ~~v~~dl~glvV~v 154 (171)
+|++ |+||+++.+| +++|++
T Consensus 332 ~g~~-----------l~C~~~~~~~--~~~~~~ 351 (352)
T TIGR02160 332 AGYV-----------LTCQAYPLSD--KLVVDY 351 (352)
T ss_pred CCcE-----------EEeeEEECCC--cEEEec
Confidence 8899 9999999986 688764
No 21
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.38 E-value=9.8e-13 Score=113.89 Aligned_cols=102 Identities=16% Similarity=0.220 Sum_probs=73.7
Q ss_pred eeEEeeeeeccccccccCCCCCCCceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEecCC
Q psy1435 20 HRIHTSVCTRHGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEY 99 (171)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~p~~~~~mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~g~ 99 (171)
.|||+|.-.-- .+......++|++.+ .| +++.+.+|+|||++|+++|+++++.|+ .|.||+|++++.+|.
T Consensus 230 ~~i~~E~F~~~------~~~~~~~~~~v~~~~-~~--~~~~~~~~~~lL~~~~~~gi~~~~~C~-~G~Cg~C~~~~~~G~ 299 (332)
T PRK10684 230 DRFFKEKFFTP------VAEAATSGLTFTKLQ-PA--REFYAPVGTTLLEALESNKVPVVAACR-AGVCGCCKTKVVSGE 299 (332)
T ss_pred HHeEeeccCCC------CCCcCCCceEEEEec-CC--EEEEeCCCChHHHHHHHcCCCccCCCC-CcCCCCCEEEEecCc
Confidence 57888764210 112233456777763 45 458889999999999999999999999 699999999999997
Q ss_pred ccCCCCCChHHHhhcccCCCCCCCeeeccccccCCCceeeeEEEecCCCceEE
Q psy1435 100 LDALPPAEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEV 152 (171)
Q Consensus 100 ~~~L~~~t~~E~~~L~~~~~~~~g~R~~~~~~~~~~RLACQ~~v~~dl~glvV 152 (171)
.+... ...|+. .+.++|++ |+||+++.+| ++|
T Consensus 300 v~~~~------~~~l~~-~~~~~g~~-----------l~C~~~~~~d---~~i 331 (332)
T PRK10684 300 YTVSS------TMTLTP-AEIAQGYV-----------LACSCHPQGD---LVL 331 (332)
T ss_pred ccccc------cccCCH-HHHhCCcE-----------EEeeCEECCC---eEE
Confidence 54211 123433 24568899 9999999986 665
No 22
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.94 E-value=1e-09 Score=78.55 Aligned_cols=50 Identities=30% Similarity=0.458 Sum_probs=36.9
Q ss_pred CCceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCC---------CccccccEEEEe
Q psy1435 42 DEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEA---------SLACTTCHVYVK 96 (171)
Q Consensus 42 ~~mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG---------~G~CgtC~V~V~ 96 (171)
|++|+|+| ||+. +++++|+||++|++++|+.|++.|.. .|.|+.|.|.|.
T Consensus 1 ~~~v~i~i---dG~~--v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev~ 59 (82)
T PF13510_consen 1 DKMVTITI---DGKP--VEVPPGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLCLVEVD 59 (82)
T ss_dssp -EEEEEEE---TTEE--EEEEET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS-EEEES
T ss_pred CCEEEEEE---CCEE--EEEcCCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceEEEEEC
Confidence 45677776 7866 88899999999999999999999975 489999999995
No 23
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=98.81 E-value=9e-09 Score=86.07 Aligned_cols=71 Identities=21% Similarity=0.407 Sum_probs=56.2
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCC-----CCccccccEEEEecCCccCCCCCChHHHhhcccCC
Q psy1435 44 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACE-----ASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAP 118 (171)
Q Consensus 44 mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~Cg-----G~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~ 118 (171)
||+|++ ||+. +++++|+|||+||+++|+++++.|. +.|.|+.|.|.|. |.
T Consensus 3 ~v~i~i---dg~~--~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~-g~------------------- 57 (234)
T PRK07569 3 VKTLTI---DDQL--VSAREGETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEIE-GS------------------- 57 (234)
T ss_pred eEEEEE---CCEE--EEeCCCCHHHHHHHHcCCCCCcCcCCCCCCCCCccCCcEEEEC-CC-------------------
Confidence 355554 7866 9999999999999999999999997 5699999999993 31
Q ss_pred CCCCCeeeccccccCCCceeeeEEEecCCCceEEEeCC
Q psy1435 119 FLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPK 156 (171)
Q Consensus 119 ~~~~g~R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~ 156 (171)
.+.+ .||++.+.+ ||+|..-.
T Consensus 58 ---~~~~-----------~aC~t~v~~---Gm~v~t~~ 78 (234)
T PRK07569 58 ---NKLL-----------PACVTPVAE---GMVVQTNT 78 (234)
T ss_pred ---Cccc-----------cCcCCCCCC---CCEEEECC
Confidence 1234 789988886 68887643
No 24
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=98.54 E-value=1.5e-07 Score=91.21 Aligned_cols=76 Identities=21% Similarity=0.265 Sum_probs=61.3
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCC-----CCccccccEEEEecCCccCCCCCChHHHhhcccCC
Q psy1435 44 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACE-----ASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAP 118 (171)
Q Consensus 44 mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~Cg-----G~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~ 118 (171)
|++|++ +|+. +++++|+|||++|+++||.+|+.|. ..|.|+.|+|.|.+|..
T Consensus 1 ~~~i~i---dg~~--~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~v~v~~g~~------------------ 57 (847)
T PRK08166 1 MATIHV---DGKE--YEVNGADNLLEACLSLGIDIPYFCWHPALGSVGACRQCAVKQYQNPE------------------ 57 (847)
T ss_pred CeEEEE---CCEE--EEeCCCCHHHHHHHHcCCCCCccccCCCCCCCCccCCCeEEEeecCc------------------
Confidence 677775 7765 8889999999999999999999996 35899999999987721
Q ss_pred CCCCCeeeccccccCCCceeeeEEEecCCCceEEEeCC
Q psy1435 119 FLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPK 156 (171)
Q Consensus 119 ~~~~g~R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~ 156 (171)
+..++.+ +||++.+.+ ||+|....
T Consensus 58 ~~~~~~~-----------~aC~~~v~~---gm~v~t~~ 81 (847)
T PRK08166 58 DTRGRLV-----------MSCMTPATD---GTFISIDD 81 (847)
T ss_pred cCCCCcc-----------cCcCCCCCC---CCEEEeCC
Confidence 1124566 999988887 69998753
No 25
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=98.09 E-value=7e-06 Score=71.69 Aligned_cols=54 Identities=17% Similarity=0.253 Sum_probs=42.1
Q ss_pred CCCCceEEEEEcCCCCEEEEEe-cCCchHHHHHHHCCCCCcCCCC-----CCccccccEEEEe
Q psy1435 40 SEDEIVNITFIDKDGKRREIKG-KVGDNVLYLAHRYEIPMEGACE-----ASLACTTCHVYVK 96 (171)
Q Consensus 40 ~~~~mv~Vtfv~~~G~~~~v~~-~~G~tLLdaa~~~gI~i~~~Cg-----G~G~CgtC~V~V~ 96 (171)
+.+-.++|.++ .||+. |++ ++|+||||||+++||.||+.|. -.|.|..|.|.|.
T Consensus 62 ~~~~~~~~~I~-IDGk~--VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEVe 121 (297)
T PTZ00305 62 YAEHKPRAIMF-VNKRP--VEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQVD 121 (297)
T ss_pred hhccCCceEEE-ECCEE--EEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEEC
Confidence 33444444443 48865 998 8999999999999999999994 2478999999983
No 26
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=97.92 E-value=1.9e-05 Score=76.54 Aligned_cols=50 Identities=28% Similarity=0.464 Sum_probs=43.5
Q ss_pred CCceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCC-----CCccccccEEEEe
Q psy1435 42 DEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACE-----ASLACTTCHVYVK 96 (171)
Q Consensus 42 ~~mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~Cg-----G~G~CgtC~V~V~ 96 (171)
++|++|+| ||+. +++++|+|||+||+.+||.||+.|. ..|.|.-|.|.|.
T Consensus 2 ~~~v~~~i---dg~~--~~~~~g~til~aa~~~gi~ip~~C~~~~l~~~g~Cr~C~Vev~ 56 (797)
T PRK07860 2 PDLVTLTI---DGVE--VSVPKGTLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEVE 56 (797)
T ss_pred CceEEEEE---CCEE--EEeCCCChHHHHHHHcCCCCCeecCCCCCCCCcccCccEEEEC
Confidence 46888885 7855 8999999999999999999999995 3589999999993
No 27
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.92 E-value=1.6e-05 Score=75.24 Aligned_cols=48 Identities=23% Similarity=0.446 Sum_probs=40.7
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCC-----CccccccEEEEe
Q psy1435 44 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEA-----SLACTTCHVYVK 96 (171)
Q Consensus 44 mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG-----~G~CgtC~V~V~ 96 (171)
|++|+| ||+. +++++|+||+++|+++|+.++..|.. .|.|+.|.|.|.
T Consensus 3 ~v~~~i---dg~~--~~~~~g~ti~~a~~~~g~~ip~~c~~~~~~~~g~C~~C~V~v~ 55 (652)
T PRK12814 3 TISLTI---NGRS--VTAAPGTSILEAAASAGITIPTLCFHQELEATGSCWMCIVEIK 55 (652)
T ss_pred eEEEEE---CCEE--EEeCCcCcHHHHHHHcCCccccccCCCCCCCccccceeEEEEC
Confidence 355554 7865 89999999999999999999999973 699999999883
No 28
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=97.87 E-value=2e-05 Score=76.88 Aligned_cols=48 Identities=31% Similarity=0.628 Sum_probs=40.6
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCC-----CCCccccccEEEEe
Q psy1435 44 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGAC-----EASLACTTCHVYVK 96 (171)
Q Consensus 44 mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~C-----gG~G~CgtC~V~V~ 96 (171)
|++|++ ||+. +++++|+|||+||+++||.+|+.| ...|.|+.|.|.|.
T Consensus 1 mv~i~I---dG~~--v~~~~G~til~aa~~~gi~iP~lC~~~~~~~~G~Cr~C~VeV~ 53 (819)
T PRK08493 1 MITITI---NGKE--CEAQEGEYILNVARRNGIFIPAICYLSGCSPTLACRLCMVEAD 53 (819)
T ss_pred CeEEEE---CCEE--EEeCCCCHHHHHHHHcCCccccccccCCCCCCccccceEEEEC
Confidence 567765 7865 888999999999999999999887 33589999999883
No 29
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=97.83 E-value=2.4e-05 Score=71.39 Aligned_cols=60 Identities=22% Similarity=0.374 Sum_probs=48.0
Q ss_pred EEEEecCCchHHHHHHH------CCCCCcCCCCCCccccccEEEEecCCccCCCCCChHHHhhcccCCCCCCCeeecccc
Q psy1435 57 REIKGKVGDNVLYLAHR------YEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQN 130 (171)
Q Consensus 57 ~~v~~~~G~tLLdaa~~------~gI~i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~~~~~g~R~~~~~ 130 (171)
.++.+.+|+|||+++++ .++..++.|+ .|.||+|.|.| +|. .+
T Consensus 23 ~~v~~~~~~tvl~al~~~~~~~~~~l~~~~~C~-~g~Cg~C~v~v-~G~------------------------~~----- 71 (486)
T PRK06259 23 YEVPVKEGMTVLDALEYINKTYDANIAFRSSCR-AGQCGSCAVTI-NGE------------------------PV----- 71 (486)
T ss_pred EEEeCCCCChHHHHHHHhchhcCCCceecCCCC-CCCCCCCEEEE-CCe------------------------Ee-----
Confidence 45677799999999995 5556788998 59999999997 552 25
Q ss_pred ccCCCceeeeEEEecCCCceEEEeCC
Q psy1435 131 VMYNSRLGCQIILTKELEGIEVTLPK 156 (171)
Q Consensus 131 ~~~~~RLACQ~~v~~dl~glvV~vp~ 156 (171)
||||+.+.+ |++|+.+.
T Consensus 72 ------laC~~~~~~---~~~i~~~~ 88 (486)
T PRK06259 72 ------LACKTEVED---GMIIEPLD 88 (486)
T ss_pred ------cccccCCCC---CCEEEecC
Confidence 999999987 59998764
No 30
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=97.83 E-value=3.2e-05 Score=74.39 Aligned_cols=48 Identities=29% Similarity=0.486 Sum_probs=41.4
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCC-----CccccccEEEEe
Q psy1435 44 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEA-----SLACTTCHVYVK 96 (171)
Q Consensus 44 mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG-----~G~CgtC~V~V~ 96 (171)
|++|+| ||+. +++++|+|||+||+.+||.||+.|.- .|.|.-|.|.|.
T Consensus 1 m~~~~i---dg~~--~~~~~g~~il~a~~~~g~~ip~~c~~~~~~~~~~C~~C~v~v~ 53 (776)
T PRK09129 1 MVEIEI---DGKK--VEVPEGSMVIEAADKAGIYIPRFCYHKKLSIAANCRMCLVEVE 53 (776)
T ss_pred CeEEEE---CCEE--EEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCCCcceeEEEEC
Confidence 677775 7865 88899999999999999999999962 379999999984
No 31
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=97.68 E-value=6.5e-05 Score=70.39 Aligned_cols=42 Identities=29% Similarity=0.418 Sum_probs=37.8
Q ss_pred CCCEEEEEecCCchHHHHHHHCCCCCcCCCC-----CCccccccEEEEe
Q psy1435 53 DGKRREIKGKVGDNVLYLAHRYEIPMEGACE-----ASLACTTCHVYVK 96 (171)
Q Consensus 53 ~G~~~~v~~~~G~tLLdaa~~~gI~i~~~Cg-----G~G~CgtC~V~V~ 96 (171)
||+. +++++|+|||++|+++||+||+.|. ..|.|..|.|.|.
T Consensus 4 dg~~--~~~~~g~~il~a~~~~gi~ip~~C~~~~l~~~g~Cr~C~v~v~ 50 (603)
T TIGR01973 4 DGKE--LEVPKGTTVLQACLSAGIEIPRFCYHEKLSIAGNCRMCLVEVE 50 (603)
T ss_pred CCEE--EEeCCCCHHHHHHHHcCCCccccCCCCCCCCCCccccCEEEEC
Confidence 7855 9999999999999999999999995 3589999999994
No 32
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=97.68 E-value=6.1e-05 Score=72.41 Aligned_cols=50 Identities=36% Similarity=0.527 Sum_probs=42.6
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCC-----CCCccccccEEEEecC
Q psy1435 44 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGAC-----EASLACTTCHVYVKHE 98 (171)
Q Consensus 44 mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~C-----gG~G~CgtC~V~V~~g 98 (171)
|++|++ ||+. +++++|+|||+||+++||+||+.| +--|.|..|.|.+...
T Consensus 1 m~tI~I---DG~e--i~v~~g~tvLqAa~~aGi~IP~fCyh~~ls~~GaCRmClVEveg~ 55 (693)
T COG1034 1 MVTITI---DGKE--IEVPEGETVLQAAREAGIDIPTFCYHPRLSIAGACRMCLVEVEGA 55 (693)
T ss_pred CeEEEE---CCEE--EecCCCcHHHHHHHHcCCCCCcccccCCCCcccceeEEEEEecCC
Confidence 677775 7855 899999999999999999999998 3448999999999653
No 33
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=97.67 E-value=7.9e-05 Score=71.34 Aligned_cols=49 Identities=27% Similarity=0.379 Sum_probs=42.6
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCC-----CCccccccEEEEec
Q psy1435 44 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACE-----ASLACTTCHVYVKH 97 (171)
Q Consensus 44 mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~Cg-----G~G~CgtC~V~V~~ 97 (171)
|++|++ ||+. +++++|+||||||+++||.||..|- -.|.|..|.|.|..
T Consensus 1 m~~~~I---dg~~--v~v~~g~til~a~~~~gi~IP~lCy~~~l~~~g~Cr~ClVev~~ 54 (687)
T PRK09130 1 MVKLKV---DGKE--IEVPDGYTLLQACEAAGAEIPRFCYHERLSIAGNCRMCLVEVKG 54 (687)
T ss_pred CeEEEE---CCEE--EEeCCCCHHHHHHHHcCCCcCcccCCCCCCCCCCCCCCEEEECC
Confidence 678875 7855 9999999999999999999999994 34899999999964
No 34
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=97.59 E-value=0.00018 Score=57.94 Aligned_cols=50 Identities=18% Similarity=0.361 Sum_probs=42.8
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHHHHHCCC-CCcCCCCCCccccccEEEEe
Q psy1435 45 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEI-PMEGACEASLACTTCHVYVK 96 (171)
Q Consensus 45 v~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI-~i~~~CgG~G~CgtC~V~V~ 96 (171)
..|+|. -+|+.+++.+.++++|++.+++.|+ .....|+. |.||.|-|.|.
T Consensus 7 ~~i~~~-vNG~~~~~~~~~~~~Ll~~LR~~gltgtK~GC~~-G~CGACtVlvd 57 (159)
T PRK09908 7 ITIECT-INGMPFQLHAAPGTPLSELLREQGLLSVKQGCCV-GECGACTVLVD 57 (159)
T ss_pred eeEEEE-ECCEEEEEecCCCCcHHHHHHHcCCCCCCCCcCC-CCCCCcEEEEC
Confidence 446655 6899999999999999999999886 57789985 99999999984
No 35
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=97.54 E-value=0.00013 Score=55.35 Aligned_cols=40 Identities=18% Similarity=0.347 Sum_probs=29.4
Q ss_pred EEEEecCCchHHHHHHHC------CCCCcCCCCCCccccccEEEEecC
Q psy1435 57 REIKGKVGDNVLYLAHRY------EIPMEGACEASLACTTCHVYVKHE 98 (171)
Q Consensus 57 ~~v~~~~G~tLLdaa~~~------gI~i~~~CgG~G~CgtC~V~V~~g 98 (171)
.+|.+.+|.|+|+++..- -+...++|+. |.||+|.++| +|
T Consensus 21 y~v~~~~~~tVLd~L~~Ik~~~D~sLafr~sCr~-giCGsCam~I-NG 66 (110)
T PF13085_consen 21 YEVPVEPGMTVLDALNYIKEEQDPSLAFRYSCRS-GICGSCAMRI-NG 66 (110)
T ss_dssp EEEEGGSTSBHHHHHHHHHHHT-TT--B--SSSS-SSSSTTEEEE-TT
T ss_pred EEecCCCCCcHHHHHHHHHhccCCCeEEEecCCC-CCCCCCEEEE-CC
Confidence 568889999999998632 3446789985 9999999999 45
No 36
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.50 E-value=0.00033 Score=61.64 Aligned_cols=40 Identities=15% Similarity=0.420 Sum_probs=34.3
Q ss_pred EEEEEecCCchHHHHHHHCCCCCc------CCCCCCccccccEEEEe
Q psy1435 56 RREIKGKVGDNVLYLAHRYEIPME------GACEASLACTTCHVYVK 96 (171)
Q Consensus 56 ~~~v~~~~G~tLLdaa~~~gI~i~------~~CgG~G~CgtC~V~V~ 96 (171)
.++|++.+|+||||++...++.++ .+|+ .|.||+|.|.|.
T Consensus 20 ~~~v~~~~~~tvL~~l~~i~~~~d~tL~~~~~c~-~~~Cg~C~v~in 65 (329)
T PRK12577 20 TYTLEVEPGNTILDCLNRIKWEQDGSLAFRKNCR-NTICGSCAMRIN 65 (329)
T ss_pred EEEEECCCCChHHHHHHHhCCcCCCCcEEcCCCC-CCCCCCCEEEEC
Confidence 367888999999999999998874 4588 489999999994
No 37
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=97.45 E-value=0.00018 Score=60.83 Aligned_cols=41 Identities=15% Similarity=0.400 Sum_probs=32.0
Q ss_pred EEEEEecCCchHHHHHHHCC------CCCcCCCCCCccccccEEEEecC
Q psy1435 56 RREIKGKVGDNVLYLAHRYE------IPMEGACEASLACTTCHVYVKHE 98 (171)
Q Consensus 56 ~~~v~~~~G~tLLdaa~~~g------I~i~~~CgG~G~CgtC~V~V~~g 98 (171)
+.+|.+.+|.|||+++..-. +...++|.. |.||+|-++| +|
T Consensus 25 ~y~v~~~~~~tvLdaL~~Ik~~~D~sL~fr~sCr~-giCGsCam~I-NG 71 (239)
T PRK13552 25 TYQLEETPGMTLFIALNRIREEQDPSLQFDFVCRA-GICGSCAMVI-NG 71 (239)
T ss_pred EEEecCCCCCCHHHHHHHHHhcCCCCeeEeccCCC-CCCCCceeEE-CC
Confidence 36678889999999987433 334689995 9999999998 45
No 38
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=97.38 E-value=0.00022 Score=60.65 Aligned_cols=41 Identities=17% Similarity=0.282 Sum_probs=31.5
Q ss_pred EEEEEecCCchHHHHHHHCC-------------CCCcCCCCCCccccccEEEEecC
Q psy1435 56 RREIKGKVGDNVLYLAHRYE-------------IPMEGACEASLACTTCHVYVKHE 98 (171)
Q Consensus 56 ~~~v~~~~G~tLLdaa~~~g-------------I~i~~~CgG~G~CgtC~V~V~~g 98 (171)
+++|++.+|.|||+++..-. +...++|.. |.||+|-++| +|
T Consensus 24 ~y~v~~~~~~tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr~-giCGsCam~I-NG 77 (249)
T PRK08640 24 EFEIPYRPNMNVISALMEIRRNPVNAKGEKTTPVVWDMNCLE-EVCGACSMVI-NG 77 (249)
T ss_pred EEEecCCCCCcHHHHHHHHHhcccccccccCCCeeEecccCC-CCCCcCeeEE-CC
Confidence 35677788999999987331 345679985 9999999999 45
No 39
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=97.23 E-value=0.00047 Score=67.07 Aligned_cols=51 Identities=27% Similarity=0.550 Sum_probs=43.4
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCC-----CCccccccEEEEe
Q psy1435 41 EDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACE-----ASLACTTCHVYVK 96 (171)
Q Consensus 41 ~~~mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~Cg-----G~G~CgtC~V~V~ 96 (171)
+.+|++|++ ||+. +++.+|+|||++|.++||.+|+.|- --++|-+|.|.+.
T Consensus 2 ~~~~i~vti---dg~~--~~v~~G~tiL~a~~~~gI~iP~iCy~~~l~pi~sCd~ClVEid 57 (978)
T COG3383 2 AEKMITVTI---DGRS--IEVEEGTTILRAANRNGIEIPHICYHESLGPIGSCDTCLVEID 57 (978)
T ss_pred CceeEEEEE---CCeE--EecCCChHHHHHHHhcCCcccceeccCCCCcccccceEEEEec
Confidence 357788886 7865 8899999999999999999999993 3379999999964
No 40
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=97.21 E-value=0.00047 Score=58.44 Aligned_cols=39 Identities=15% Similarity=0.291 Sum_probs=30.4
Q ss_pred EEEEecCCchHHHHHHHCC------CCCcCCCCCCccccccEEEEe
Q psy1435 57 REIKGKVGDNVLYLAHRYE------IPMEGACEASLACTTCHVYVK 96 (171)
Q Consensus 57 ~~v~~~~G~tLLdaa~~~g------I~i~~~CgG~G~CgtC~V~V~ 96 (171)
.++++.+|.|||+++...+ +...++|+. |.||+|.|+|-
T Consensus 27 ~~v~~~~~~tvl~~L~~ik~~~d~~l~fr~~C~~-giCGsC~v~In 71 (244)
T PRK12385 27 YEVPYDETTSLLDALGYIKDNLAPDLSYRWSCRM-AICGSCGMMVN 71 (244)
T ss_pred EEeeCCCCCcHHHHHHHHHHhcCCCceeccCCCC-CcCCCCcceEC
Confidence 5677789999999995432 234578986 99999999995
No 41
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=97.08 E-value=0.0016 Score=54.78 Aligned_cols=51 Identities=18% Similarity=0.365 Sum_probs=40.9
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHHHHHC-CC-CCcCCCCCCccccccEEEEecC
Q psy1435 45 VNITFIDKDGKRREIKGKVGDNVLYLAHRY-EI-PMEGACEASLACTTCHVYVKHE 98 (171)
Q Consensus 45 v~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~-gI-~i~~~CgG~G~CgtC~V~V~~g 98 (171)
.+|+|. -+|+.+++++.++++||++++++ ++ .....|+. |.||.|.|.| +|
T Consensus 50 ~~i~~~-VNG~~~~~~v~~~~tLLd~LR~~l~ltGtK~GC~~-G~CGACTVlV-dG 102 (217)
T PRK11433 50 SPVTLK-VNGKTEQLEVDTRTTLLDALREHLHLTGTKKGCDH-GQCGACTVLV-NG 102 (217)
T ss_pred ceEEEE-ECCEEEEEecCCCCcHHHHHHHhcCCCCCCCCCCC-CCcCceEEEE-CC
Confidence 446554 68999999999999999999986 43 35678985 9999999966 45
No 42
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=97.05 E-value=0.0011 Score=57.58 Aligned_cols=40 Identities=15% Similarity=0.365 Sum_probs=28.7
Q ss_pred EEEEecC-CchHHHHHHHCC------CCCcCCCCCCccccccEEEEecC
Q psy1435 57 REIKGKV-GDNVLYLAHRYE------IPMEGACEASLACTTCHVYVKHE 98 (171)
Q Consensus 57 ~~v~~~~-G~tLLdaa~~~g------I~i~~~CgG~G~CgtC~V~V~~g 98 (171)
.+|.+.. |.|||+++..-. +...++|.. |.||+|-++| +|
T Consensus 64 y~v~~~~~~~tVLd~L~~Ik~~~D~sLsfr~sCr~-giCGsCam~I-NG 110 (276)
T PLN00129 64 YKVDLNDCGPMVLDVLIKIKNEQDPSLTFRRSCRE-GICGSCAMNI-DG 110 (276)
T ss_pred EEeCCCCCCchHHHHHHHHHHcCCCCeEEeccCCC-CCCCCCeeEE-CC
Confidence 3455444 789999987522 234689985 9999999998 45
No 43
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=96.96 E-value=0.0012 Score=56.39 Aligned_cols=40 Identities=13% Similarity=0.292 Sum_probs=30.8
Q ss_pred EEEE-ecCCchHHHHHHHC----------CCCCcCCCCCCccccccEEEEecC
Q psy1435 57 REIK-GKVGDNVLYLAHRY----------EIPMEGACEASLACTTCHVYVKHE 98 (171)
Q Consensus 57 ~~v~-~~~G~tLLdaa~~~----------gI~i~~~CgG~G~CgtC~V~V~~g 98 (171)
.+|+ +.+|.|||+++..- .+...++|.. |.||+|-++| +|
T Consensus 22 y~v~~~~~~~tvLd~L~~Ik~~~~~~~~~~l~fr~sCr~-~iCGsCam~I-NG 72 (250)
T PRK07570 22 YEVDDISPDMSFLEMLDVLNEQLIEKGEEPVAFDHDCRE-GICGMCGLVI-NG 72 (250)
T ss_pred EEecCCCCCCcHHHHHHHHHHHhhccCCCCeeEeccccC-CcCCcceeEE-CC
Confidence 4566 56899999998732 2556789995 9999999999 45
No 44
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=96.92 E-value=0.002 Score=51.32 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=37.9
Q ss_pred CCCCEEEEEecCCchHHHHHHHC-CC-CCcCCCCCCccccccEEEEe
Q psy1435 52 KDGKRREIKGKVGDNVLYLAHRY-EI-PMEGACEASLACTTCHVYVK 96 (171)
Q Consensus 52 ~~G~~~~v~~~~G~tLLdaa~~~-gI-~i~~~CgG~G~CgtC~V~V~ 96 (171)
-+|+.+++++.++++|++++++. |+ .....|+. |.||.|-|.|.
T Consensus 6 vNG~~~~~~~~~~~~Ll~~LR~~lgltg~K~gC~~-G~CGACtVlvd 51 (148)
T TIGR03193 6 VNGRWREDAVADNMLLVDYLRDTVGLTGTKQGCDG-GECGACTVLVD 51 (148)
T ss_pred ECCEEEEeecCCCCcHHHHHHHhcCCCCCCCCCCC-CCCCCCEEEEC
Confidence 48888899999999999999985 65 46788985 99999999994
No 45
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=96.75 E-value=0.0046 Score=49.31 Aligned_cols=45 Identities=16% Similarity=0.322 Sum_probs=38.0
Q ss_pred CCCCEEEEEecCCchHHHHHHHC-CC-CCcCCCCCCccccccEEEEec
Q psy1435 52 KDGKRREIKGKVGDNVLYLAHRY-EI-PMEGACEASLACTTCHVYVKH 97 (171)
Q Consensus 52 ~~G~~~~v~~~~G~tLLdaa~~~-gI-~i~~~CgG~G~CgtC~V~V~~ 97 (171)
-+|+.+++.+.++++|++++++. ++ .....|+. |.||.|.|.|..
T Consensus 8 vNG~~~~~~~~~~~~Ll~~LR~~~~ltgtK~gC~~-G~CGACtVlvdG 54 (151)
T TIGR03198 8 VNGQAWEVAAVPTTRLSDLLRKELQLTGTKVSCGI-GRCGACSVLIDG 54 (151)
T ss_pred ECCEEEEeecCCCcHHHHHHHhccCCCCCCCCCCC-CcCCccEEEECC
Confidence 48999889999999999999985 65 46678985 999999999953
No 46
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=96.61 E-value=0.0054 Score=52.45 Aligned_cols=40 Identities=23% Similarity=0.458 Sum_probs=33.3
Q ss_pred EEEEEecCCchHHHHHHHCCC------CCcCCCCCCccccccEEEEe
Q psy1435 56 RREIKGKVGDNVLYLAHRYEI------PMEGACEASLACTTCHVYVK 96 (171)
Q Consensus 56 ~~~v~~~~G~tLLdaa~~~gI------~i~~~CgG~G~CgtC~V~V~ 96 (171)
.++|++.++.|||++++.-+. ...++|+. |.||+|-|.|.
T Consensus 21 ~y~v~~~~~~tvLd~L~~i~~~~d~~l~~r~~C~~-g~CGsCa~~In 66 (251)
T PRK12386 21 DYTVEVNEGEVVLDVIHRLQATQAPDLAVRWNCKA-GKCGSCSAEIN 66 (251)
T ss_pred EEEEeCCCCCCHHHHHHHhccccCCCCcccCCCCC-CcCCCCEEEEC
Confidence 366888899999999999664 45688985 99999999995
No 47
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=96.60 E-value=0.0028 Score=53.86 Aligned_cols=39 Identities=18% Similarity=0.349 Sum_probs=30.3
Q ss_pred EEEEecCCchHHHHHHHCC------CCCcCCCCCCccccccEEEEe
Q psy1435 57 REIKGKVGDNVLYLAHRYE------IPMEGACEASLACTTCHVYVK 96 (171)
Q Consensus 57 ~~v~~~~G~tLLdaa~~~g------I~i~~~CgG~G~CgtC~V~V~ 96 (171)
.+|...+|.|||+++..-. +....+|.. |.||+|-+.|-
T Consensus 22 yev~~~~~~~vLdaL~~Ik~e~d~~Lsfr~sCR~-gICGSCam~IN 66 (234)
T COG0479 22 YEVPYDEGMTVLDALLYIKEEQDPTLSFRRSCRE-GICGSCAMNIN 66 (234)
T ss_pred EEecCCCCCcHHHHHHHHHHhcCCccchhhhccC-CcCCcceeEEC
Confidence 4566679999999987322 335689996 99999999984
No 48
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=96.49 E-value=0.009 Score=51.63 Aligned_cols=41 Identities=15% Similarity=0.260 Sum_probs=33.8
Q ss_pred EEEEEecCCchHHHHHHHCCCCC------cCCCCCCccccccEEEEecC
Q psy1435 56 RREIKGKVGDNVLYLAHRYEIPM------EGACEASLACTTCHVYVKHE 98 (171)
Q Consensus 56 ~~~v~~~~G~tLLdaa~~~gI~i------~~~CgG~G~CgtC~V~V~~g 98 (171)
.+++++.+|+|||+++...+..+ ...|+ .|.||.|.|.| +|
T Consensus 26 ~~~v~~~~~~tvLd~L~~i~~~~d~tl~~~~~C~-~G~CgsC~v~I-NG 72 (279)
T PRK12576 26 EYKVKVDRFTQVTEALRRIKEEQDPTLSYRASCH-MAVCGSCGMKI-NG 72 (279)
T ss_pred EEEEecCCCCHHHHHHHHhCCccCCCceecCCCC-CCCCCCCEEEE-CC
Confidence 36788899999999999977543 36786 69999999999 45
No 49
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=96.30 E-value=0.0038 Score=51.72 Aligned_cols=39 Identities=21% Similarity=0.423 Sum_probs=31.6
Q ss_pred EEEEecCCchHHHHHHHCC------CCCcCCCCCCccccccEEEEe
Q psy1435 57 REIKGKVGDNVLYLAHRYE------IPMEGACEASLACTTCHVYVK 96 (171)
Q Consensus 57 ~~v~~~~G~tLLdaa~~~g------I~i~~~CgG~G~CgtC~V~V~ 96 (171)
+++++.+|+|||++++..+ +.....|+ .|.||+|.|.|.
T Consensus 17 ~~v~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~-~g~Cg~C~v~vn 61 (220)
T TIGR00384 17 YEVPADEGMTVLDALNYIKDEQDPSLAFRRSCR-NGICGSCAMNVN 61 (220)
T ss_pred EEEeCCCCCcHHHHHHHHHHhcCCCceeecccC-CCCCCCCeeEEC
Confidence 5577889999999999865 23457897 599999999984
No 50
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=96.19 E-value=0.0098 Score=49.69 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=32.1
Q ss_pred EEEEec-CCchHHHHHHHCC-CCC-----cCCCCCCccccccEEEEe
Q psy1435 57 REIKGK-VGDNVLYLAHRYE-IPM-----EGACEASLACTTCHVYVK 96 (171)
Q Consensus 57 ~~v~~~-~G~tLLdaa~~~g-I~i-----~~~CgG~G~CgtC~V~V~ 96 (171)
++|++. +|+|||++++..+ ..+ ...|+ .|.||+|.|.|.
T Consensus 20 ~~v~~~~~~~tvl~~L~~~~~~~~~~l~~~~~c~-~g~Cg~C~v~vn 65 (232)
T PRK05950 20 YEVDVDECGPMVLDALIKIKNEIDPTLTFRRSCR-EGVCGSDAMNIN 65 (232)
T ss_pred EEeCCCCCCCHHHHHHHHhCCccCCcceeeCCCC-CCCCCCCEEEEC
Confidence 567888 9999999999997 332 47886 499999999994
No 51
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=96.16 E-value=0.0043 Score=52.49 Aligned_cols=39 Identities=15% Similarity=0.287 Sum_probs=27.4
Q ss_pred EEEEecC-CchHHHHHHHCC-----CCCcCCCCCCccccccEEEEe
Q psy1435 57 REIKGKV-GDNVLYLAHRYE-----IPMEGACEASLACTTCHVYVK 96 (171)
Q Consensus 57 ~~v~~~~-G~tLLdaa~~~g-----I~i~~~CgG~G~CgtC~V~V~ 96 (171)
++|++.+ +.|||+++..-. +...++|.. |.||+|-++|-
T Consensus 25 y~v~~~~~~~tvld~L~~ik~~d~~l~fr~sCr~-giCGsCa~~iN 69 (235)
T PRK12575 25 YEIAPRAEDRMLLDVLGRVKAQDETLSYRRSCRE-GICGSDAMNIN 69 (235)
T ss_pred EEecCCCCCCcHHHHHHHHHhcCCCeeeeccCCC-CCCCCCeeEEC
Confidence 4455544 468999876432 224588985 99999999984
No 52
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=96.16 E-value=0.016 Score=46.66 Aligned_cols=50 Identities=20% Similarity=0.311 Sum_probs=40.0
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHHHHHCC-C-CCcCCCCCCccccccEEEEec
Q psy1435 46 NITFIDKDGKRREIKGKVGDNVLYLAHRYE-I-PMEGACEASLACTTCHVYVKH 97 (171)
Q Consensus 46 ~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~g-I-~i~~~CgG~G~CgtC~V~V~~ 97 (171)
.|+|. -+|+.+++++.++++|++++++.. + .....|+ .|.||.|-|.+..
T Consensus 3 ~i~lt-vNG~~~~~~~~p~~~Ll~~LRd~l~ltgtk~GC~-~g~CGACtVlvDG 54 (156)
T COG2080 3 PITLT-VNGEPVELDVDPRTPLLDVLRDELGLTGTKKGCG-HGQCGACTVLVDG 54 (156)
T ss_pred cEEEE-ECCeEEEEEeCCCChHHHHHHHhcCCCCcCCCCC-CccCCceEEEECC
Confidence 34443 589999999999999999999554 4 3568898 5999999998854
No 53
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=95.44 E-value=0.029 Score=56.07 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=38.3
Q ss_pred EEEEcCCCCEEEEEecCCchHHHHHHHCCCC-CcCCCCCCccccccEEEEe
Q psy1435 47 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVK 96 (171)
Q Consensus 47 Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~-i~~~CgG~G~CgtC~V~V~ 96 (171)
|+|. -+|+.+++++.++++||+++++.|+. ....|.+.|.||.|-|.|.
T Consensus 3 i~~~-vNg~~~~~~~~~~~~l~~~LR~~~~~~~k~g~c~~g~CGaCtv~~d 52 (956)
T PRK09800 3 IHFT-LNGAPQELTVNPGENVQKLLFNMGMHSVRNSDDGFGFAGSDAIIFN 52 (956)
T ss_pred EEEE-ECCEEEEEecCCCCCHHHHHHHCCCCccccCCCCcccCCCCEEEEC
Confidence 4444 58999999999999999999996654 3344334699999999984
No 54
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=95.25 E-value=0.025 Score=52.16 Aligned_cols=44 Identities=16% Similarity=0.287 Sum_probs=37.9
Q ss_pred CCCCEEEE-EecCCchHHHHHHHC-CC-CCcCCCCCCccccccEEEEe
Q psy1435 52 KDGKRREI-KGKVGDNVLYLAHRY-EI-PMEGACEASLACTTCHVYVK 96 (171)
Q Consensus 52 ~~G~~~~v-~~~~G~tLLdaa~~~-gI-~i~~~CgG~G~CgtC~V~V~ 96 (171)
-+|+.+++ ++.++++|++.++++ |+ .....|+. |.||.|-|.|.
T Consensus 5 ~Ng~~~~~~~~~~~~~ll~~lR~~~~l~g~k~gC~~-G~CGaCtv~~~ 51 (467)
T TIGR02963 5 LNGETVTLSDVDPTRTLLDYLREDAGLTGTKEGCAE-GDCGACTVVVG 51 (467)
T ss_pred ECCEEEEeecCCCCCCHHHHHHHhcCCCCCCcccCC-CCCCceEEEEE
Confidence 48988888 699999999999975 65 47788985 99999999994
No 55
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.09 E-value=0.099 Score=52.13 Aligned_cols=72 Identities=18% Similarity=0.134 Sum_probs=52.6
Q ss_pred EEEEcCCCCEEEEEecCCchHHHHHHHCCCCCc-----------CCCCCCccccccEEEEecCCccCCCCCChHHHhhcc
Q psy1435 47 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIPME-----------GACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLD 115 (171)
Q Consensus 47 Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~-----------~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~ 115 (171)
|+|. .||+. +++.+|+||..|+..+|+.+- ..|.| +.|..|.|.|..+..
T Consensus 13 ~~~~-~dg~~--~~~~~g~t~a~al~a~g~~~~~~s~~~~~prg~~c~~-~~~~~c~v~i~~~~~--------------- 73 (985)
T TIGR01372 13 LRFT-FDGKS--YSGFAGDTLASALLANGVHLVGRSFKYHRPRGILTAG-VEEPNALVTVGSGAQ--------------- 73 (985)
T ss_pred EEEE-ECCEE--eecCCCCHHHHHHHhCCCeeecccCCCCCCCcccccC-ccCCCeEEEECCCcC---------------
Confidence 4443 48866 999999999999999997642 46875 789999999954410
Q ss_pred cCCCCCCCeeeccccccCCCceeeeEEEecCCCceEEEeCC
Q psy1435 116 LAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPK 156 (171)
Q Consensus 116 ~~~~~~~g~R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~ 156 (171)
-.++. .||++.+.+ ||.|+-..
T Consensus 74 ----~~~~~------------~ac~~~~~~---gm~~~~~~ 95 (985)
T TIGR01372 74 ----REPNT------------RATTQELYD---GLVATSQN 95 (985)
T ss_pred ----CCCCc------------cceeEEccc---CCEEeccc
Confidence 01333 599999987 68887643
No 56
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=94.28 E-value=0.068 Score=53.42 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=36.4
Q ss_pred CCCEEEEEecCCchHHHHHHHCCCC-CcC-CCCCCccccccEEEEe
Q psy1435 53 DGKRREIKGKVGDNVLYLAHRYEIP-MEG-ACEASLACTTCHVYVK 96 (171)
Q Consensus 53 ~G~~~~v~~~~G~tLLdaa~~~gI~-i~~-~CgG~G~CgtC~V~V~ 96 (171)
+|+.+++++.++++|++++++.|+. ... .|+ .|.||.|-|.|.
T Consensus 4 Ng~~~~~~~~~~~~l~~~LR~~~l~~~k~~~c~-~g~CGaCtv~~d 48 (951)
T TIGR03313 4 NGAPQTLECKLGENVQTLLFNMGMHSVRNSDDG-FGFAGSDAILFN 48 (951)
T ss_pred CCEEEEEecCCCCCHHHHHHHCCCCCCcCCCCC-cccCCCCEEEEC
Confidence 7888899999999999999998764 444 465 689999999985
No 57
>KOG2282|consensus
Probab=94.00 E-value=0.098 Score=49.56 Aligned_cols=56 Identities=20% Similarity=0.380 Sum_probs=43.1
Q ss_pred CCCCCCCceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCC-----CccccccEEEEecC
Q psy1435 37 DPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEA-----SLACTTCHVYVKHE 98 (171)
Q Consensus 37 ~p~~~~~mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG-----~G~CgtC~V~V~~g 98 (171)
.|.++ +.+.|. + ||.. |.+.+|.|+|+++...|++||-+|-- -|-|..|.|.|...
T Consensus 26 ~~a~~-~~ievf-v--d~~~--v~v~pg~tvlqac~~~gv~iprfcyh~rlsvagncrmclveveks 86 (708)
T KOG2282|consen 26 TPASP-NKIEVF-V--DDQS--VMVEPGTTVLQACAKVGVDIPRFCYHERLSVAGNCRMCLVEVEKS 86 (708)
T ss_pred ccCCc-cceEEE-E--CCee--EeeCCCcHHHHHHHHhCCCcchhhhhhhhhhccceeEEEEEeccC
Confidence 45554 446764 3 5655 88999999999999999999999931 17899999888653
No 58
>PLN00192 aldehyde oxidase
Probab=92.36 E-value=0.22 Score=51.56 Aligned_cols=48 Identities=19% Similarity=0.394 Sum_probs=39.5
Q ss_pred EEEEcCCCCEEEE-EecCCchHHHHHHHC-CC-CCcCCCCCCccccccEEEEe
Q psy1435 47 ITFIDKDGKRREI-KGKVGDNVLYLAHRY-EI-PMEGACEASLACTTCHVYVK 96 (171)
Q Consensus 47 Vtfv~~~G~~~~v-~~~~G~tLLdaa~~~-gI-~i~~~CgG~G~CgtC~V~V~ 96 (171)
|+|. -+|+.+++ .+.+++|||+.++++ |+ .....|+. |.||.|-|.|.
T Consensus 6 i~~~-vNg~~~~~~~~~p~~~Ll~~LR~~~~ltgtK~gC~~-G~CGaCtV~v~ 56 (1344)
T PLN00192 6 LVFA-VNGERFELSSVDPSTTLLEFLRTQTPFKSVKLGCGE-GGCGACVVLLS 56 (1344)
T ss_pred EEEE-ECCEEEEeccCCCCCcHHHHHHHhhCCCCcCCCCCC-CcCCCcEEEEe
Confidence 4444 58998888 589999999999975 65 46788985 99999999995
No 59
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=92.29 E-value=0.18 Score=52.03 Aligned_cols=48 Identities=17% Similarity=0.351 Sum_probs=38.5
Q ss_pred EEEEcCCCCEE-EEEecCCchHHHHHHHC-CC-CCcCCCCCCccccccEEEEe
Q psy1435 47 ITFIDKDGKRR-EIKGKVGDNVLYLAHRY-EI-PMEGACEASLACTTCHVYVK 96 (171)
Q Consensus 47 Vtfv~~~G~~~-~v~~~~G~tLLdaa~~~-gI-~i~~~CgG~G~CgtC~V~V~ 96 (171)
|+|. -+|+.+ ...+.++++||+.++++ |+ .....|+. |.||.|-|.|.
T Consensus 3 ~~~~-~Ng~~~~~~~~~~~~~ll~~LR~~~~l~gtk~gC~~-G~CGaCtV~~~ 53 (1330)
T TIGR02969 3 LLFY-VNGRKVVEKNVDPETMLLPYLRKKLRLTGTKYGCGG-GGCGACTVMIS 53 (1330)
T ss_pred EEEE-ECCEEEEeccCCCCCcHHHHHHhhcCCCCCCCCcCC-CCCCCcEEEEC
Confidence 4444 588875 45789999999999975 65 46788985 99999999996
No 60
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=91.14 E-value=0.36 Score=47.73 Aligned_cols=41 Identities=22% Similarity=0.489 Sum_probs=34.4
Q ss_pred CCCEEEEEecCCchHHHHHHHC-CC-CCcCCCCCCccccccEEEEe
Q psy1435 53 DGKRREIKGKVGDNVLYLAHRY-EI-PMEGACEASLACTTCHVYVK 96 (171)
Q Consensus 53 ~G~~~~v~~~~G~tLLdaa~~~-gI-~i~~~CgG~G~CgtC~V~V~ 96 (171)
+|+ ++++.++++||+++++. |+ .....|+. |.||.|-|.|.
T Consensus 6 ng~--~~~~~~~~~l~~~lr~~~~~~~~k~gc~~-g~cgactv~~d 48 (848)
T TIGR03311 6 NGR--EVDVNEEKKLLEFLREDLRLTGVKNGCGE-GACGACTVIVN 48 (848)
T ss_pred CCE--EeeCCCCCcHHHHHHHhcCCCcCCCCCCC-CCCCCcEEEEC
Confidence 675 47889999999999974 76 57789985 99999999994
No 61
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=76.66 E-value=5.3 Score=27.59 Aligned_cols=26 Identities=12% Similarity=0.248 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHHHH
Q psy1435 45 VNITFIDKDGKRREIKGKVGDNVLYLAH 72 (171)
Q Consensus 45 v~Vtfv~~~G~~~~v~~~~G~tLLdaa~ 72 (171)
+.|.+ |+|+...+.+++|+|+.|++.
T Consensus 3 ~~v~L--P~~q~t~V~vrpg~ti~d~L~ 28 (71)
T PF02196_consen 3 CRVHL--PNGQRTVVQVRPGMTIRDALS 28 (71)
T ss_dssp EEEEE--TTTEEEEEEE-TTSBHHHHHH
T ss_pred EEEEC--CCCCEEEEEEcCCCCHHHHHH
Confidence 45554 999999999999999988865
No 62
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=75.46 E-value=6.1 Score=27.64 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=20.4
Q ss_pred EEcCCCCEEEEEecCCchHHHHHH
Q psy1435 49 FIDKDGKRREIKGKVGDNVLYLAH 72 (171)
Q Consensus 49 fv~~~G~~~~v~~~~G~tLLdaa~ 72 (171)
+.-|+|++..|.+.+|+|+.|++.
T Consensus 4 V~LPng~~t~V~vrpg~ti~d~L~ 27 (72)
T cd01760 4 VYLPNGQRTVVPVRPGMSVRDVLA 27 (72)
T ss_pred EECcCCCeEEEEECCCCCHHHHHH
Confidence 445899999999999999998764
No 63
>smart00455 RBD Raf-like Ras-binding domain.
Probab=71.65 E-value=8.9 Score=26.46 Aligned_cols=23 Identities=22% Similarity=0.134 Sum_probs=19.9
Q ss_pred EcCCCCEEEEEecCCchHHHHHH
Q psy1435 50 IDKDGKRREIKGKVGDNVLYLAH 72 (171)
Q Consensus 50 v~~~G~~~~v~~~~G~tLLdaa~ 72 (171)
.-|+|+...|.+++|+||.|++.
T Consensus 5 ~LP~~~~~~V~vrpg~tl~e~L~ 27 (70)
T smart00455 5 HLPDNQRTVVKVRPGKTVRDALA 27 (70)
T ss_pred ECCCCCEEEEEECCCCCHHHHHH
Confidence 34899999999999999998865
No 64
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=68.63 E-value=3.4 Score=34.35 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=22.8
Q ss_pred chHHHHHHHCCCC---C-----cCCCCCCccccccEEE
Q psy1435 65 DNVLYLAHRYEIP---M-----EGACEASLACTTCHVY 94 (171)
Q Consensus 65 ~tLLdaa~~~gI~---i-----~~~CgG~G~CgtC~V~ 94 (171)
+.+.+++++.|++ + ...|-|.|.||+|+|.
T Consensus 203 ~~~~~~L~~~Gv~~~~i~~~~~~~~~~~~g~c~~c~~~ 240 (253)
T cd06221 203 RFVAKELLKLGVPEEQIWVSLERRMKCGVGKCGHCQIG 240 (253)
T ss_pred HHHHHHHHHcCCCHHHEEEehhhccccCCccccCcccC
Confidence 4678888999987 3 2345557999999987
No 65
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=67.06 E-value=4.6 Score=33.42 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=23.0
Q ss_pred hHHHHHHHCCCCC-----c-CCCCCCccccccEEEEecC
Q psy1435 66 NVLYLAHRYEIPM-----E-GACEASLACTTCHVYVKHE 98 (171)
Q Consensus 66 tLLdaa~~~gI~i-----~-~~CgG~G~CgtC~V~V~~g 98 (171)
.+.++++++|++. . -.|| .|.||+|.|.+..+
T Consensus 195 ~v~~~l~~~Gv~~~~~~e~~m~cg-~G~C~~C~~~~~~~ 232 (250)
T PRK00054 195 KVVEILKEKKVPAYVSLERRMKCG-IGACGACVCDTETG 232 (250)
T ss_pred HHHHHHHHcCCcEEEEEcccccCc-CcccCcCCcccCCC
Confidence 5667788889763 2 3465 69999999986543
No 66
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=66.12 E-value=11 Score=24.95 Aligned_cols=32 Identities=19% Similarity=0.105 Sum_probs=23.8
Q ss_pred EEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCC
Q psy1435 49 FIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGAC 82 (171)
Q Consensus 49 fv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~C 82 (171)
+..|+|+. .+.+.|.|.+|+|..-+-.+...|
T Consensus 3 v~lpdG~~--~~~~~g~T~~d~A~~I~~~l~~~~ 34 (60)
T PF02824_consen 3 VYLPDGSI--KELPEGSTVLDVAYSIHSSLAKRA 34 (60)
T ss_dssp EEETTSCE--EEEETTBBHHHHHHHHSHHHHHCE
T ss_pred EECCCCCe--eeCCCCCCHHHHHHHHCHHHHhhe
Confidence 33499988 567999999999998765554333
No 67
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=65.16 E-value=14 Score=25.45 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=27.2
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCC
Q psy1435 44 IVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPM 78 (171)
Q Consensus 44 mv~Vtfv~~~G~~~~v~~~~G~tLLda----a~~~gI~i 78 (171)
|+.|+|.+..|+...+++.+..|+.++ +...|++.
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~ 39 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRP 39 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCh
Confidence 688999988999988999999988765 33445553
No 68
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=64.87 E-value=17 Score=33.77 Aligned_cols=51 Identities=20% Similarity=0.365 Sum_probs=36.3
Q ss_pred ceEEEEEcCCCCEEEE-EecCCchHHHHHH-HCCCC-CcCCCCCCccccccEEEEe
Q psy1435 44 IVNITFIDKDGKRREI-KGKVGDNVLYLAH-RYEIP-MEGACEASLACTTCHVYVK 96 (171)
Q Consensus 44 mv~Vtfv~~~G~~~~v-~~~~G~tLLdaa~-~~gI~-i~~~CgG~G~CgtC~V~V~ 96 (171)
|-.|.|+ -+|+.+.+ .+.+.+||||-++ +.+.- -.-.|.. |.||.|-|.|-
T Consensus 6 ~~~irf~-lN~~~~~l~~v~P~~TlLd~LR~d~~ltGtKEGCAE-GDCGACTVlVg 59 (493)
T COG4630 6 RNTIRFL-LNGETRVLSDVPPTTTLLDYLRLDRRLTGTKEGCAE-GDCGACTVLVG 59 (493)
T ss_pred cceeEEE-ecCceEEeecCCcchHHHHHHHHhcccccccccccC-CCcCceEEEEE
Confidence 3445665 46766554 5788899999999 55542 4567874 89999999884
No 69
>PLN02906 xanthine dehydrogenase
Probab=63.45 E-value=7.6 Score=40.48 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=26.7
Q ss_pred CchHHHHHHHCCC-CCcCCCCCCccccccEEEEe
Q psy1435 64 GDNVLYLAHRYEI-PMEGACEASLACTTCHVYVK 96 (171)
Q Consensus 64 G~tLLdaa~~~gI-~i~~~CgG~G~CgtC~V~V~ 96 (171)
.+|||+.+++.|+ .....|+. |.||.|-|.|.
T Consensus 1 ~~~ll~~LR~~~l~g~k~gC~~-g~CGaCtv~~~ 33 (1319)
T PLN02906 1 HQTLLEYLRDLGLTGTKLGCGE-GGCGACTVMVS 33 (1319)
T ss_pred CCcHHHHHHhCCCCCCCCCcCC-CCCCCeEEEEC
Confidence 3689999998665 36788985 99999999997
No 70
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=62.33 E-value=9 Score=31.69 Aligned_cols=33 Identities=30% Similarity=0.330 Sum_probs=24.4
Q ss_pred chHHHHHHHCCCCC-----cCCCCCCccccccEEEEec
Q psy1435 65 DNVLYLAHRYEIPM-----EGACEASLACTTCHVYVKH 97 (171)
Q Consensus 65 ~tLLdaa~~~gI~i-----~~~CgG~G~CgtC~V~V~~ 97 (171)
+.+.+++++.|++. ...|-|.|.||+|.+...+
T Consensus 193 ~~~~~~L~~~Gv~~~~~~~~~~~~~~g~c~~c~~~~~~ 230 (246)
T cd06218 193 KAVAELAAERGVPCQVSLEERMACGIGACLGCVVKTKD 230 (246)
T ss_pred HHHHHHHHhcCCCEEEEecccccCccceecccEEEeec
Confidence 36777788999873 2334446999999999875
No 71
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=58.32 E-value=13 Score=26.90 Aligned_cols=33 Identities=12% Similarity=0.095 Sum_probs=24.5
Q ss_pred eEEEEEcCCCCE-EEEEecCCchHHHHHHHCCCC
Q psy1435 45 VNITFIDKDGKR-REIKGKVGDNVLYLAHRYEIP 77 (171)
Q Consensus 45 v~Vtfv~~~G~~-~~v~~~~G~tLLdaa~~~gI~ 77 (171)
|.|.+-.++.+. .++++++|.|+.+|++..|+.
T Consensus 3 VeV~yA~p~~q~~~~l~vp~GtTv~~Ai~~Sgi~ 36 (84)
T PF03658_consen 3 VEVAYALPERQVILTLEVPEGTTVAQAIEASGIL 36 (84)
T ss_dssp EEEEEEETTCEEEEEEEEETT-BHHHHHHHHTHH
T ss_pred EEEEEECCCeEEEEEEECCCcCcHHHHHHHcCch
Confidence 556665555433 568999999999999999985
No 72
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=57.96 E-value=8.7 Score=31.33 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=23.3
Q ss_pred chHHHHHHHCCCCC------cCCCCCCccccccEEEEe
Q psy1435 65 DNVLYLAHRYEIPM------EGACEASLACTTCHVYVK 96 (171)
Q Consensus 65 ~tLLdaa~~~gI~i------~~~CgG~G~CgtC~V~V~ 96 (171)
+.+.+++++.|++. -..|| .|.||+|.|...
T Consensus 180 ~~~~~~L~~~g~~~~i~~e~f~~cg-~g~C~~C~v~~~ 216 (233)
T cd06220 180 YKVLEILDERGVRAQFSLERYMKCG-IGICGSCCIDPT 216 (233)
T ss_pred HHHHHHHHhcCCcEEEEecccccCc-CCCcCccEeccC
Confidence 46777888888852 14566 699999999874
No 73
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=56.87 E-value=7.6 Score=32.58 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=20.3
Q ss_pred hHHHHHHHCCCCC--------cCCCCCCccccccEEE
Q psy1435 66 NVLYLAHRYEIPM--------EGACEASLACTTCHVY 94 (171)
Q Consensus 66 tLLdaa~~~gI~i--------~~~CgG~G~CgtC~V~ 94 (171)
.+.+.+.++|++- ...|-|.|.||.|+|-
T Consensus 204 ~~~~~L~~~Gv~~~~i~~~~~~~m~cg~g~c~~c~~~ 240 (261)
T TIGR02911 204 FTVQELLKKGIKEENIWVSYERKMCCGVGKCGHCKID 240 (261)
T ss_pred HHHHHHHHcCCCHHHEEEEeccceeccCcCCCCcccC
Confidence 4667788899862 2334457999999775
No 74
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=55.69 E-value=28 Score=23.62 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=25.7
Q ss_pred CceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCC
Q psy1435 43 EIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPM 78 (171)
Q Consensus 43 ~mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i 78 (171)
+|++|++... +...+++...|.|+.+.+...+++.
T Consensus 3 ~mm~v~vng~-~~~~~~~~~~~~tv~~ll~~l~~~~ 37 (70)
T PRK08364 3 LMIRVKVIGR-GIEKEIEWRKGMKVADILRAVGFNT 37 (70)
T ss_pred eEEEEEEecc-ccceEEEcCCCCcHHHHHHHcCCCC
Confidence 4678887532 2245688889999999999998753
No 75
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=53.98 E-value=13 Score=30.73 Aligned_cols=29 Identities=31% Similarity=0.411 Sum_probs=22.4
Q ss_pred hHHHHHHHCCCCCc------CCCCCCccccccEEEE
Q psy1435 66 NVLYLAHRYEIPME------GACEASLACTTCHVYV 95 (171)
Q Consensus 66 tLLdaa~~~gI~i~------~~CgG~G~CgtC~V~V 95 (171)
.+.+.+.++|++.. -.|| .|.|+.|.|..
T Consensus 194 ~~~~~l~~~Gv~~~~s~e~~m~Cg-~G~C~~C~~~~ 228 (248)
T cd06219 194 AVSELTRPYGIPTVVSLNPIMVDG-TGMCGACRVTV 228 (248)
T ss_pred HHHHHHHHcCCCEEEEecccccCc-cceeeeEEEEe
Confidence 56677888998742 3576 79999999986
No 76
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=53.69 E-value=19 Score=25.61 Aligned_cols=40 Identities=13% Similarity=0.181 Sum_probs=26.9
Q ss_pred CCCCEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEec
Q psy1435 52 KDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKH 97 (171)
Q Consensus 52 ~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~ 97 (171)
|+.++-.|++.+|++|.|++..+ +..-+.+ .-.|.|+...
T Consensus 7 PnqQrT~V~vrpG~tl~daL~Ka-Lk~R~l~-----pe~C~V~~~~ 46 (74)
T cd01816 7 PNKQRTVVNVRPGMTLRDALAKA-LKVRGLQ-----PECCAVFRLG 46 (74)
T ss_pred CCCCeEEEEecCCcCHHHHHHHH-HHHcCCC-----hhHeEEEEcC
Confidence 77777789999999998886644 2222222 2357788774
No 77
>PF03990 DUF348: Domain of unknown function (DUF348) ; InterPro: IPR007137 This domain normally occurs as tandem repeats; however it is found as a single copy in the Saccharomyces cerevisiae (Baker's yeast) DNA-binding nuclear protein YCR593 (P25357 from SWISSPROT).
Probab=51.76 E-value=39 Score=20.85 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=23.2
Q ss_pred EEEEcCCCCEEEEEecCCchHHHHHHHCCCCC
Q psy1435 47 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIPM 78 (171)
Q Consensus 47 Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i 78 (171)
|++. -+|+.+++... ..|+-+++.++||.+
T Consensus 2 Vtv~-~dG~~~~v~T~-a~tV~~~L~~~gI~l 31 (43)
T PF03990_consen 2 VTVT-VDGKEKTVYTT-ASTVGDALKELGITL 31 (43)
T ss_pred EEEE-ECCEEEEEEeC-CCCHHHHHHhCCCCC
Confidence 4444 48988777654 579999999999987
No 78
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=49.20 E-value=11 Score=32.03 Aligned_cols=39 Identities=18% Similarity=0.125 Sum_probs=28.3
Q ss_pred EEecCC--chHHHHHHHCCCC---C------cCCCCCCccccccEEEEecC
Q psy1435 59 IKGKVG--DNVLYLAHRYEIP---M------EGACEASLACTTCHVYVKHE 98 (171)
Q Consensus 59 v~~~~G--~tLLdaa~~~gI~---i------~~~CgG~G~CgtC~V~V~~g 98 (171)
+-++++ +.+.+.+.+.|++ + .-.|| .|.|+.|+|....|
T Consensus 217 iCGP~~m~~~v~~~L~~~Gv~~~~i~~~l~~~m~cg-~g~c~~c~~~~~~~ 266 (289)
T PRK08345 217 ICGPPVMYKFVFKELINRGYRPERIYVTLERRMRCG-IGKCGHCIVGTSTS 266 (289)
T ss_pred EECCHHHHHHHHHHHHHcCCCHHHEEEEehhccccc-CcccCCCccCCCCc
Confidence 334444 4678888899986 2 24698 59999999997655
No 79
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=49.16 E-value=19 Score=24.66 Aligned_cols=24 Identities=13% Similarity=0.027 Sum_probs=15.0
Q ss_pred EcCCCCEEEEEecCCchHHHHHHH
Q psy1435 50 IDKDGKRREIKGKVGDNVLYLAHR 73 (171)
Q Consensus 50 v~~~G~~~~v~~~~G~tLLdaa~~ 73 (171)
+.+++++.+|.+.++++|.+++.+
T Consensus 2 i~~~~rr~~vkvtp~~~l~~VL~e 25 (65)
T PF11470_consen 2 ICYNFRRFKVKVTPNTTLNQVLEE 25 (65)
T ss_dssp E-TTS-EEEE---TTSBHHHHHHH
T ss_pred CccCCcEEEEEECCCCCHHHHHHH
Confidence 457899999999999988776554
No 80
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=48.07 E-value=32 Score=22.61 Aligned_cols=24 Identities=21% Similarity=0.183 Sum_probs=19.9
Q ss_pred CCCEEEEEecCCchHHHHHHHCCCCC
Q psy1435 53 DGKRREIKGKVGDNVLYLAHRYEIPM 78 (171)
Q Consensus 53 ~G~~~~v~~~~G~tLLdaa~~~gI~i 78 (171)
+|+. .++.+|.||.+++...+++.
T Consensus 6 NG~~--~~~~~~~tl~~lL~~l~~~~ 29 (66)
T PRK05659 6 NGEP--RELPDGESVAALLAREGLAG 29 (66)
T ss_pred CCeE--EEcCCCCCHHHHHHhcCCCC
Confidence 6766 67788999999999998754
No 81
>PRK01777 hypothetical protein; Validated
Probab=47.28 E-value=55 Score=23.99 Aligned_cols=23 Identities=9% Similarity=-0.060 Sum_probs=20.1
Q ss_pred EEEEecCCchHHHHHHHCCCCCc
Q psy1435 57 REIKGKVGDNVLYLAHRYEIPME 79 (171)
Q Consensus 57 ~~v~~~~G~tLLdaa~~~gI~i~ 79 (171)
.++++++|.|+.|++...||...
T Consensus 19 ~~l~vp~GtTv~dal~~sgi~~~ 41 (95)
T PRK01777 19 QRLTLQEGATVEEAIRASGLLEL 41 (95)
T ss_pred EEEEcCCCCcHHHHHHHcCCCcc
Confidence 56889999999999999998654
No 82
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=45.97 E-value=38 Score=24.03 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=27.5
Q ss_pred cCCCCEEEEEecCCchHHHHHH----HCCCCCcCCCCCCccccccEEEEecC
Q psy1435 51 DKDGKRREIKGKVGDNVLYLAH----RYEIPMEGACEASLACTTCHVYVKHE 98 (171)
Q Consensus 51 ~~~G~~~~v~~~~G~tLLdaa~----~~gI~i~~~CgG~G~CgtC~V~V~~g 98 (171)
-|||.+-.|.+.+|+||.|++. ..|+. ...|.|+...+
T Consensus 6 LPdg~~T~V~vrpG~ti~d~L~kllekRgl~----------~~~~~vf~~g~ 47 (73)
T cd01817 6 LPDGSTTVVPTRPGESIRDLLSGLCEKRGIN----------YAAVDLFLVGG 47 (73)
T ss_pred CCCCCeEEEEecCCCCHHHHHHHHHHHcCCC----------hhHEEEEEecC
Confidence 4899998999999998877654 45543 23566777744
No 83
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=43.84 E-value=15 Score=30.81 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=20.4
Q ss_pred hHHHHHHHCCCCCc---------CCCCCCccccccEEE
Q psy1435 66 NVLYLAHRYEIPME---------GACEASLACTTCHVY 94 (171)
Q Consensus 66 tLLdaa~~~gI~i~---------~~CgG~G~CgtC~V~ 94 (171)
.+.+.+++.|++-. -.|| .|.||+|.|.
T Consensus 206 ~~~~~L~~~Gv~~~~i~~~~~~~m~cg-~g~c~~c~~~ 242 (263)
T PRK08221 206 FTVLEFLKRGIKEENIWVSYERKMCCG-VGKCGHCKID 242 (263)
T ss_pred HHHHHHHHcCCCHHHEEEEecceeEcc-CcccCCcccC
Confidence 56677888998621 2455 6999999976
No 84
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=43.65 E-value=22 Score=30.13 Aligned_cols=30 Identities=27% Similarity=0.265 Sum_probs=22.4
Q ss_pred hHHHHHHHCCCCCc------CCCCCCccccccEEEEe
Q psy1435 66 NVLYLAHRYEIPME------GACEASLACTTCHVYVK 96 (171)
Q Consensus 66 tLLdaa~~~gI~i~------~~CgG~G~CgtC~V~V~ 96 (171)
.+.+++.++|+++. -.|| .|.|+.|.|...
T Consensus 195 ~v~~~l~~~gv~~~~sle~~M~CG-~G~C~~C~v~~~ 230 (281)
T PRK06222 195 FVAELTKPYGIKTIVSLNPIMVDG-TGMCGACRVTVG 230 (281)
T ss_pred HHHHHHHhcCCCEEEECcccccCc-ccccceeEEEEC
Confidence 45677788898642 4685 699999999754
No 85
>KOG0430|consensus
Probab=42.77 E-value=41 Score=35.09 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=34.0
Q ss_pred CCCCEEEEE-ecCCchHHHHHHHC-CC-CCcCCCCCCccccccEEEEec
Q psy1435 52 KDGKRREIK-GKVGDNVLYLAHRY-EI-PMEGACEASLACTTCHVYVKH 97 (171)
Q Consensus 52 ~~G~~~~v~-~~~G~tLLdaa~~~-gI-~i~~~CgG~G~CgtC~V~V~~ 97 (171)
-+|++.+++ +.+..||+.-++++ ++ .....|+. |.||.|-|.|..
T Consensus 7 VNG~~~~~~~vdP~~TL~~fLR~k~~ltgtKlgC~E-GGCGaCtv~ls~ 54 (1257)
T KOG0430|consen 7 INGKRVEVELLPPDLTLNTFLREKLGLTGTKLGCGE-GGCGACTVVLSK 54 (1257)
T ss_pred ECCEEeeEecCCcchhHHHHHHHhcCCcceeeccCC-CCccceEEEEec
Confidence 478775553 57788999988765 23 35678986 999999999975
No 86
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=41.20 E-value=1.4e+02 Score=21.84 Aligned_cols=58 Identities=17% Similarity=0.198 Sum_probs=40.4
Q ss_pred cCCCceeecCcceeEEeeeeeccccccccCCCCCCCceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCC
Q psy1435 8 CKLPPVVRPNNVHRIHTSVCTRHGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPM 78 (171)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~mv~Vtfv~~~G~~~~v~~~~G~tLLda----a~~~gI~i 78 (171)
-|-||...-.|-.-+|--+| ......|+|....|+...+++.+.+|+-++ +...|++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~-------------~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~ 65 (103)
T cd01802 4 KKEPPFFNEDNMGPFHYKLP-------------FYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPV 65 (103)
T ss_pred ccCCCccccCCcceeEEeec-------------cCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCh
Confidence 36688888888766665333 122367777888999999999999998764 44555543
No 87
>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []. The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.
Probab=40.11 E-value=20 Score=22.25 Aligned_cols=17 Identities=47% Similarity=0.694 Sum_probs=13.2
Q ss_pred CCCCCccccccEEEEecC
Q psy1435 81 ACEASLACTTCHVYVKHE 98 (171)
Q Consensus 81 ~CgG~G~CgtC~V~V~~g 98 (171)
.|| .|.|+.|.|....+
T Consensus 5 ~CG-~G~C~~C~v~~~~~ 21 (40)
T PF10418_consen 5 ACG-VGACGGCVVPVKDG 21 (40)
T ss_dssp SSS-SSSS-TTEEECSST
T ss_pred cCC-CcEeCCcEeeeecC
Confidence 586 69999999998765
No 88
>PRK06437 hypothetical protein; Provisional
Probab=39.95 E-value=61 Score=21.87 Aligned_cols=26 Identities=8% Similarity=-0.079 Sum_probs=21.4
Q ss_pred CCCEEEEEecCCchHHHHHHHCCCCC
Q psy1435 53 DGKRREIKGKVGDNVLYLAHRYEIPM 78 (171)
Q Consensus 53 ~G~~~~v~~~~G~tLLdaa~~~gI~i 78 (171)
.++.++++.+++.|+.+.+.+.|++.
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~Lgi~~ 34 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKDLGLDE 34 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHHcCCCC
Confidence 44557788899999999999999853
No 89
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=39.71 E-value=44 Score=23.99 Aligned_cols=28 Identities=14% Similarity=-0.026 Sum_probs=22.1
Q ss_pred cCCCCEEEEEecCCchHHHHHH----HCCCCC
Q psy1435 51 DKDGKRREIKGKVGDNVLYLAH----RYEIPM 78 (171)
Q Consensus 51 ~~~G~~~~v~~~~G~tLLdaa~----~~gI~i 78 (171)
-|+|....+.+++|+|++|++. ++|++-
T Consensus 6 lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp 37 (77)
T cd01818 6 LPDNQPVLTYLRPGMSVEDFLESACKRKQLDP 37 (77)
T ss_pred CCCCceEEEEECCCCCHHHHHHHHHHhcCCCh
Confidence 3899999999999999988754 555544
No 90
>COG1683 Uncharacterized conserved protein [Function unknown]
Probab=39.11 E-value=10 Score=30.64 Aligned_cols=34 Identities=26% Similarity=0.174 Sum_probs=28.8
Q ss_pred chHHHHHHHCCCCCcCCCCCCccccccEEEEecC
Q psy1435 65 DNVLYLAHRYEIPMEGACEASLACTTCHVYVKHE 98 (171)
Q Consensus 65 ~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~g 98 (171)
+.-|+.|++++++.--.|.++.+||.+.|++-+.
T Consensus 89 ~~~L~~a~~~~~~~aILk~kSPSCG~~~vydg~f 122 (156)
T COG1683 89 ERTLALAKEAGIDGAILKEKSPSCGSGFVYDGSF 122 (156)
T ss_pred HHHHHHhhhcCCcEEEEecCCCCCCceeeEeecc
Confidence 3567888889998888899999999999998653
No 91
>PRK07440 hypothetical protein; Provisional
Probab=38.90 E-value=64 Score=22.01 Aligned_cols=30 Identities=10% Similarity=0.170 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCC
Q psy1435 44 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPM 78 (171)
Q Consensus 44 mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i 78 (171)
+++|++ +|+. .+..++.||.+.+.+.+++.
T Consensus 4 ~m~i~v---NG~~--~~~~~~~tl~~lL~~l~~~~ 33 (70)
T PRK07440 4 PITLQV---NGET--RTCSSGTSLPDLLQQLGFNP 33 (70)
T ss_pred ceEEEE---CCEE--EEcCCCCCHHHHHHHcCCCC
Confidence 466665 6766 66788999999999998754
No 92
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=38.25 E-value=1.3e+02 Score=20.99 Aligned_cols=35 Identities=23% Similarity=0.243 Sum_probs=26.6
Q ss_pred CceEEEEEcCCCCEEEEEecCCchHHHHH----HHCCCC
Q psy1435 43 EIVNITFIDKDGKRREIKGKVGDNVLYLA----HRYEIP 77 (171)
Q Consensus 43 ~mv~Vtfv~~~G~~~~v~~~~G~tLLdaa----~~~gI~ 77 (171)
..+.|.+.+.+|+...+.+...++|..+. .+.|++
T Consensus 10 ~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~ 48 (87)
T cd01763 10 EHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLS 48 (87)
T ss_pred CeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCC
Confidence 34788888899999999999998887653 344554
No 93
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=37.07 E-value=86 Score=22.81 Aligned_cols=27 Identities=7% Similarity=0.127 Sum_probs=22.0
Q ss_pred EEEEcCCCCEEEEEecCCchHHHHHHH
Q psy1435 47 ITFIDKDGKRREIKGKVGDNVLYLAHR 73 (171)
Q Consensus 47 Vtfv~~~G~~~~v~~~~G~tLLdaa~~ 73 (171)
|.|...||..+.+.+.+..|..++++.
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~ 31 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQL 31 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHH
Confidence 444557899999999999999998764
No 94
>PF10531 SLBB: SLBB domain; InterPro: IPR019554 The soluble ligand-binding beta-grasp domain (SLBB) contains a beta-grasp fold. They are found in a diverse set of proteins that include the animal vitamin B12 uptake proteins; transcobalamin, intrinsic factor and the bacterial polysaccharide export proteins []. Some proteins may be part of a membrane complex involved in electron transport, others are probably involved in the export of the extracellular polysaccharide colanic acid from the cell to medium.; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1 2W8I_E 2W8H_E 2J58_D.
Probab=36.31 E-value=67 Score=20.79 Aligned_cols=26 Identities=4% Similarity=-0.187 Sum_probs=18.5
Q ss_pred CEEEEEecCCchHHHHHHHCCCCCcC
Q psy1435 55 KRREIKGKVGDNVLYLAHRYEIPMEG 80 (171)
Q Consensus 55 ~~~~v~~~~G~tLLdaa~~~gI~i~~ 80 (171)
+.-.+++..|.||.|++..+|-..+.
T Consensus 10 ~PG~~~~~~g~tl~~~i~~AGG~~~~ 35 (59)
T PF10531_consen 10 RPGTYELPPGTTLSDAIAQAGGLTPR 35 (59)
T ss_dssp S-EEEEEETT-BHHHHHHCTTSBBTT
T ss_pred CCEEEEECCCCcHHHHHHHhCCCCCC
Confidence 34567888999999999988854443
No 95
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=35.38 E-value=80 Score=20.45 Aligned_cols=25 Identities=20% Similarity=0.128 Sum_probs=20.4
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHH
Q psy1435 46 NITFIDKDGKRREIKGKVGDNVLYL 70 (171)
Q Consensus 46 ~Vtfv~~~G~~~~v~~~~G~tLLda 70 (171)
+|.|...+|+..++++....|+.+.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~l 26 (72)
T cd01809 2 EIKVKTLDSQTHTFTVEEEITVLDL 26 (72)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHH
Confidence 5667778899989999999988765
No 96
>TIGR02899 spore_safA spore coat assembly protein SafA. in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins.
Probab=33.97 E-value=24 Score=20.37 Aligned_cols=18 Identities=22% Similarity=0.608 Sum_probs=14.7
Q ss_pred cCCchHHHHHHHCCCCCc
Q psy1435 62 KVGDNVLYLAHRYEIPME 79 (171)
Q Consensus 62 ~~G~tLLdaa~~~gI~i~ 79 (171)
.+|+||.+.|+++|+++.
T Consensus 2 ~~gdtl~~IA~~~~~~~~ 19 (44)
T TIGR02899 2 QKGDTLWKIAKKYGVDFD 19 (44)
T ss_pred CCCCCHHHHHHHHCcCHH
Confidence 578999999999887643
No 97
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=32.43 E-value=94 Score=20.34 Aligned_cols=25 Identities=28% Similarity=0.186 Sum_probs=20.6
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHH
Q psy1435 46 NITFIDKDGKRREIKGKVGDNVLYL 70 (171)
Q Consensus 46 ~Vtfv~~~G~~~~v~~~~G~tLLda 70 (171)
.|+|.+.+|+...+++.+..|+.+.
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~l 26 (76)
T cd01806 2 LIKVKTLTGKEIEIDIEPTDKVERI 26 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHH
Confidence 4777778999988999999888665
No 98
>PF02762 Cbl_N3: CBL proto-oncogene N-terminus, SH2-like domain; InterPro: IPR014742 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the SH2-like domain.; PDB: 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B ....
Probab=32.27 E-value=77 Score=23.04 Aligned_cols=37 Identities=24% Similarity=0.418 Sum_probs=24.9
Q ss_pred eeeeeccccccccCCCCCCCceEEEEEcCCCCEEEEEecCCchHHHHHHH
Q psy1435 24 TSVCTRHGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHR 73 (171)
Q Consensus 24 ~~~~~~~~~~~~~~p~~~~~mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~ 73 (171)
--||||-|. |. |-++..+|+- --..+.+.+|.+|+.+
T Consensus 31 RlSCTrLGQ--WA----------IGyV~~dg~I-~QTIPqnk~L~qaLid 67 (86)
T PF02762_consen 31 RLSCTRLGQ--WA----------IGYVTQDGKI-LQTIPQNKSLYQALID 67 (86)
T ss_dssp EEESSSTTS--EE----------EEEEETTSEE-EEE--SSS-HHHHHHH
T ss_pred eeccccccc--ee----------EEEEcCCCcE-EEecCCCchHHHHHHh
Confidence 347888874 44 7788888874 3456888999999874
No 99
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=32.12 E-value=47 Score=19.64 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=12.7
Q ss_pred EecCCchHHHHHHHCCCCC
Q psy1435 60 KGKVGDNVLYLAHRYEIPM 78 (171)
Q Consensus 60 ~~~~G~tLLdaa~~~gI~i 78 (171)
.+.+|+|+..+|.++|+..
T Consensus 2 ~V~~gDtl~~IA~~~~~~~ 20 (44)
T PF01476_consen 2 TVQPGDTLWSIAKRYGISV 20 (44)
T ss_dssp EE-TT--HHHHHHHTTS-H
T ss_pred EECcCCcHHHHHhhhhhhH
Confidence 3578999999999998864
No 100
>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function.
Probab=30.25 E-value=56 Score=17.92 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=16.3
Q ss_pred EEecCCchHHHHHHHCCCCC
Q psy1435 59 IKGKVGDNVLYLAHRYEIPM 78 (171)
Q Consensus 59 v~~~~G~tLLdaa~~~gI~i 78 (171)
..+..|+|+.+++.+.++..
T Consensus 3 ~~v~~gdt~~~ia~~~~~~~ 22 (46)
T cd00118 3 YTVKKGDTLSSIAQRYGISV 22 (46)
T ss_pred EEECCCCCHHHHHHHHCcCH
Confidence 46688999999999887764
No 101
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=30.11 E-value=43 Score=32.45 Aligned_cols=29 Identities=31% Similarity=0.449 Sum_probs=22.2
Q ss_pred hHHHHHHHCCCCC------cCCCCCCccccccEEEE
Q psy1435 66 NVLYLAHRYEIPM------EGACEASLACTTCHVYV 95 (171)
Q Consensus 66 tLLdaa~~~gI~i------~~~CgG~G~CgtC~V~V 95 (171)
.+.+.+.++|++. .-.|| .|.|+.|.|..
T Consensus 195 ~v~~~l~~~gv~~~~Sle~~M~CG-~G~C~~C~v~~ 229 (752)
T PRK12778 195 FVCLLTKKYGIPTIVSLNTIMVDG-TGMCGACRVTV 229 (752)
T ss_pred HHHHHHHHcCCCEEEeCcccccCc-ccccCcceeEe
Confidence 4567788889875 34675 69999999964
No 102
>KOG3049|consensus
Probab=29.99 E-value=53 Score=28.37 Aligned_cols=38 Identities=21% Similarity=0.435 Sum_probs=26.1
Q ss_pred EEEec-CCchHHHHHHH--CCCC----CcCCCCCCccccccEEEEe
Q psy1435 58 EIKGK-VGDNVLYLAHR--YEIP----MEGACEASLACTTCHVYVK 96 (171)
Q Consensus 58 ~v~~~-~G~tLLdaa~~--~gI~----i~~~CgG~G~CgtC~V~V~ 96 (171)
+|... =|--+|||+.. +.++ ..-+|.. |.||+|...|-
T Consensus 69 ~vDL~~CGpMvLDALiKIKnE~DptLTFRRSCRE-GICGSCAMNI~ 113 (288)
T KOG3049|consen 69 EVDLNDCGPMVLDALIKIKNEMDPTLTFRRSCRE-GICGSCAMNIN 113 (288)
T ss_pred eecHHhcchHHHHHHHHhhcccCCceehhhhhhc-cccccceeccC
Confidence 34433 36789999874 3343 2358985 99999998874
No 103
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=29.73 E-value=1.1e+02 Score=21.78 Aligned_cols=33 Identities=9% Similarity=0.298 Sum_probs=24.3
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCC
Q psy1435 41 EDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPM 78 (171)
Q Consensus 41 ~~~mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i 78 (171)
...|++|++ +|+. .++..+.||.+.+...+++.
T Consensus 15 ~~~~m~I~V---NG~~--~~~~~~~tl~~LL~~l~~~~ 47 (84)
T PRK06083 15 AMVLITISI---NDQS--IQVDISSSLAQIIAQLSLPE 47 (84)
T ss_pred CCceEEEEE---CCeE--EEcCCCCcHHHHHHHcCCCC
Confidence 344677775 7877 55688999999999887643
No 104
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=29.20 E-value=1.2e+02 Score=20.34 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=23.1
Q ss_pred EEEEcCCCCEEEEEecCCchHHHH----HHHCCCC
Q psy1435 47 ITFIDKDGKRREIKGKVGDNVLYL----AHRYEIP 77 (171)
Q Consensus 47 Vtfv~~~G~~~~v~~~~G~tLLda----a~~~gI~ 77 (171)
|+|....|++..+++.+..|+.++ +...|++
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~ 35 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQ 35 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCC
Confidence 356678899999999999999874 4455554
No 105
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=28.39 E-value=1.2e+02 Score=20.16 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=19.5
Q ss_pred CCCEEEEEecCCchHHHHHHHCCCCC
Q psy1435 53 DGKRREIKGKVGDNVLYLAHRYEIPM 78 (171)
Q Consensus 53 ~G~~~~v~~~~G~tLLdaa~~~gI~i 78 (171)
+|+. .+..++.||.+++...+++.
T Consensus 6 NG~~--~~~~~~~tl~~ll~~l~~~~ 29 (65)
T PRK05863 6 NEEQ--VEVDEQTTVAALLDSLGFPE 29 (65)
T ss_pred CCEE--EEcCCCCcHHHHHHHcCCCC
Confidence 6776 55578999999999998854
No 106
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=28.16 E-value=1.5e+02 Score=20.51 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=29.4
Q ss_pred ceeecCcceeEEeeeeeccccccccCCCCCCCceEEEEEcCCCCE
Q psy1435 12 PVVRPNNVHRIHTSVCTRHGEYEWQDPKSEDEIVNITFIDKDGKR 56 (171)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~mv~Vtfv~~~G~~ 56 (171)
|+.||+..-.++--++..-+ + .+...+..+.|++.+++|+.
T Consensus 9 ~iYrPGetV~~~~~~~~~~~---~-~~~~~~~~~~v~i~dp~g~~ 49 (99)
T PF01835_consen 9 PIYRPGETVHFRAIVRDLDN---D-FKPPANSPVTVTIKDPSGNE 49 (99)
T ss_dssp SEE-TTSEEEEEEEEEEECT---T-CSCESSEEEEEEEEETTSEE
T ss_pred cCcCCCCEEEEEEEEecccc---c-cccccCCceEEEEECCCCCE
Confidence 67889888777776666553 2 34455577999999999976
No 107
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=27.31 E-value=1.3e+02 Score=19.91 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=20.3
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHH
Q psy1435 46 NITFIDKDGKRREIKGKVGDNVLYL 70 (171)
Q Consensus 46 ~Vtfv~~~G~~~~v~~~~G~tLLda 70 (171)
+|+|...+|+...+++.+.+|+.+.
T Consensus 2 ~i~vk~~~g~~~~l~v~~~~TV~~l 26 (77)
T cd01805 2 KITFKTLKQQTFPIEVDPDDTVAEL 26 (77)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHH
Confidence 4666678899999999999988765
No 108
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=27.11 E-value=1.3e+02 Score=20.04 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=20.5
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHH
Q psy1435 46 NITFIDKDGKRREIKGKVGDNVLYL 70 (171)
Q Consensus 46 ~Vtfv~~~G~~~~v~~~~G~tLLda 70 (171)
+|+|...+|+...+++.+.+|+.++
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tV~~l 26 (74)
T cd01807 2 FLTVKLLQGRECSLQVSEKESVSTL 26 (74)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHH
Confidence 4667778999988999999988764
No 109
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=26.69 E-value=1.4e+02 Score=19.52 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=20.7
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHH
Q psy1435 46 NITFIDKDGKRREIKGKVGDNVLYL 70 (171)
Q Consensus 46 ~Vtfv~~~G~~~~v~~~~G~tLLda 70 (171)
+|+|...+|+...+++.+..|+.+.
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tV~~l 26 (76)
T cd01803 2 QIFVKTLTGKTITLEVEPSDTIENV 26 (76)
T ss_pred EEEEEcCCCCEEEEEECCcCcHHHH
Confidence 4777778999989999999988765
No 110
>PTZ00044 ubiquitin; Provisional
Probab=26.44 E-value=1.4e+02 Score=19.74 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=20.7
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHH
Q psy1435 46 NITFIDKDGKRREIKGKVGDNVLYL 70 (171)
Q Consensus 46 ~Vtfv~~~G~~~~v~~~~G~tLLda 70 (171)
.|.|.+.+|++..+++.+.+|+.++
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tv~~l 26 (76)
T PTZ00044 2 QILIKTLTGKKQSFNFEPDNTVQQV 26 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHH
Confidence 4666778999999999999998764
No 111
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=26.32 E-value=1.5e+02 Score=20.17 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHH
Q psy1435 45 VNITFIDKDGKRREIKGKVGDNVLYL 70 (171)
Q Consensus 45 v~Vtfv~~~G~~~~v~~~~G~tLLda 70 (171)
.+|+|....|+..++++.+..|+-+.
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~L 27 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGL 27 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHH
Confidence 46788888899989999999988654
No 112
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=25.92 E-value=1.1e+02 Score=19.82 Aligned_cols=23 Identities=13% Similarity=0.078 Sum_probs=18.9
Q ss_pred CCCEEEEEecCCchHHHHHHHCCCC
Q psy1435 53 DGKRREIKGKVGDNVLYLAHRYEIP 77 (171)
Q Consensus 53 ~G~~~~v~~~~G~tLLdaa~~~gI~ 77 (171)
+|+. ++.++|.||.+++...++.
T Consensus 6 Ng~~--~~~~~~~tl~~ll~~l~~~ 28 (65)
T PRK06944 6 NQQT--LSLPDGATVADALAAYGAR 28 (65)
T ss_pred CCEE--EECCCCCcHHHHHHhhCCC
Confidence 6765 6778899999999998874
No 113
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=25.52 E-value=1.1e+02 Score=19.97 Aligned_cols=34 Identities=29% Similarity=0.341 Sum_probs=24.7
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHHH----HHCCCCC
Q psy1435 45 VNITFIDKDGKRREIKGKVGDNVLYLA----HRYEIPM 78 (171)
Q Consensus 45 v~Vtfv~~~G~~~~v~~~~G~tLLdaa----~~~gI~i 78 (171)
++|++...+|+...+.+...+++-.+. .+.|++.
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~ 38 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPP 38 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCc
Confidence 467888889999899999988665443 3556655
No 114
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=24.68 E-value=1.4e+02 Score=20.57 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=20.4
Q ss_pred CCCEEEEEecCCchHHHHHHHCCCCC
Q psy1435 53 DGKRREIKGKVGDNVLYLAHRYEIPM 78 (171)
Q Consensus 53 ~G~~~~v~~~~G~tLLdaa~~~gI~i 78 (171)
+|+. +++.++.|+.+.+.+.|++.
T Consensus 8 ng~~--~e~~~~~tv~dLL~~l~~~~ 31 (68)
T COG2104 8 NGKE--VEIAEGTTVADLLAQLGLNP 31 (68)
T ss_pred CCEE--EEcCCCCcHHHHHHHhCCCC
Confidence 4655 78888899999999999876
No 115
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=24.68 E-value=1.5e+02 Score=20.25 Aligned_cols=26 Identities=12% Similarity=-0.043 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHH
Q psy1435 45 VNITFIDKDGKRREIKGKVGDNVLYL 70 (171)
Q Consensus 45 v~Vtfv~~~G~~~~v~~~~G~tLLda 70 (171)
+.|+|....|+...+++.+..|+.+.
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~l 28 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSEL 28 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHH
Confidence 46888888999988888888888764
No 116
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=24.45 E-value=57 Score=26.02 Aligned_cols=26 Identities=19% Similarity=0.523 Sum_probs=17.5
Q ss_pred hHHHHHHHCC---CC--CcCCCC--CCcccccc
Q psy1435 66 NVLYLAHRYE---IP--MEGACE--ASLACTTC 91 (171)
Q Consensus 66 tLLdaa~~~g---I~--i~~~Cg--G~G~CgtC 91 (171)
=+++.+++.| ++ ...+|. +...||+|
T Consensus 163 eI~~la~~~g~~~~~~~~t~sC~~~~~~~CG~C 195 (201)
T TIGR00364 163 EIVQLADELGVLDLVIKLTYSCYAGGGEGCGKC 195 (201)
T ss_pred HHHHHHHHcCCccccHhhCCcCCCcCCCCCCCC
Confidence 5788899999 64 457884 22356666
No 117
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=24.41 E-value=60 Score=24.91 Aligned_cols=28 Identities=18% Similarity=0.545 Sum_probs=19.8
Q ss_pred chHHHHHHHCCCCC--cCCCC--CCccccccE
Q psy1435 65 DNVLYLAHRYEIPM--EGACE--ASLACTTCH 92 (171)
Q Consensus 65 ~tLLdaa~~~gI~i--~~~Cg--G~G~CgtC~ 92 (171)
.-|++.+++.|+++ .++|. ....||+|.
T Consensus 127 ~ei~~~~~~~g~~~~~s~sC~~~~~~~CG~C~ 158 (169)
T cd01995 127 AEIVRLGGELGVPLELTWSCYNGGEKHCGECD 158 (169)
T ss_pred HHHHHHHhHcCCChhheeeccCCCCCCCCCCH
Confidence 46888899999864 58884 233677773
No 118
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=23.90 E-value=1.7e+02 Score=20.68 Aligned_cols=26 Identities=15% Similarity=-0.006 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCEEEEEe--cCCchHHHH
Q psy1435 45 VNITFIDKDGKRREIKG--KVGDNVLYL 70 (171)
Q Consensus 45 v~Vtfv~~~G~~~~v~~--~~G~tLLda 70 (171)
++|++..++|+...|.+ .+..|+.++
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~l 29 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGEL 29 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHH
Confidence 67888889998855555 788898876
No 119
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=23.71 E-value=2.1e+02 Score=19.49 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCEEEEEecCCchHHHHH
Q psy1435 43 EIVNITFIDKDGKRREIKGKVGDNVLYLA 71 (171)
Q Consensus 43 ~mv~Vtfv~~~G~~~~v~~~~G~tLLdaa 71 (171)
+..+|.|.-++|++........++|-++-
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~ 31 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVY 31 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHH
Confidence 44677777899999888888888876553
No 120
>smart00257 LysM Lysin motif.
Probab=22.98 E-value=85 Score=16.84 Aligned_cols=20 Identities=35% Similarity=0.512 Sum_probs=15.6
Q ss_pred EEecCCchHHHHHHHCCCCC
Q psy1435 59 IKGKVGDNVLYLAHRYEIPM 78 (171)
Q Consensus 59 v~~~~G~tLLdaa~~~gI~i 78 (171)
+.+.+|+|+.+++.+.+++.
T Consensus 2 ~~v~~gdt~~~ia~~~~~~~ 21 (44)
T smart00257 2 YTVKKGDTLSSIARRYGISV 21 (44)
T ss_pred eEeCCCCCHHHHHHHhCCCH
Confidence 35678999999998887754
No 121
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=22.40 E-value=67 Score=32.70 Aligned_cols=30 Identities=13% Similarity=0.243 Sum_probs=21.6
Q ss_pred hHHHHHHHCCCCC----c--CCCCCCccccccEEEEe
Q psy1435 66 NVLYLAHRYEIPM----E--GACEASLACTTCHVYVK 96 (171)
Q Consensus 66 tLLdaa~~~gI~i----~--~~CgG~G~CgtC~V~V~ 96 (171)
.+.++++++||++ . ..|| -|.||.|.|.+.
T Consensus 195 av~~~~~~~gi~~~vSle~~M~cG-~G~Cg~C~v~~~ 230 (1006)
T PRK12775 195 ACVETTRPFGVKTMVSLNAIMVDG-TGMCGSCRVTVG 230 (1006)
T ss_pred HHHHHHHHCCCcEEECChhheeCc-cceeCCCEeeeC
Confidence 4556677888853 2 4575 699999999864
No 122
>PRK14595 peptide deformylase; Provisional
Probab=22.36 E-value=1.9e+02 Score=23.13 Aligned_cols=50 Identities=8% Similarity=-0.013 Sum_probs=34.2
Q ss_pred EeeeeeccccccccCCCCCCCceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCC
Q psy1435 23 HTSVCTRHGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIP 77 (171)
Q Consensus 23 ~~~~~~~~~~~~~~~p~~~~~mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~ 77 (171)
..|.|.-.- .+..+-..-+.|+|.+.|.+|+.+++++.. ++-.+.+|.++
T Consensus 86 ~~EGCLSvP--g~~~~V~R~~~I~v~~~D~~G~~~~~~~~g---~~Ar~~QHEiD 135 (162)
T PRK14595 86 DLEGSITLP--DVYGEVTRSKMIVVESYDVNGNKVELTAYD---DVARMILHIID 135 (162)
T ss_pred CCcCCccCC--CcceEecCCCEEEEEEECCCCCEEEEEEeC---HHHHHHHHHhH
Confidence 356665552 333344344559999999999998887643 77778888875
No 123
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=21.53 E-value=2.2e+02 Score=19.13 Aligned_cols=26 Identities=23% Similarity=0.176 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHH
Q psy1435 45 VNITFIDKDGKRREIKGKVGDNVLYL 70 (171)
Q Consensus 45 v~Vtfv~~~G~~~~v~~~~G~tLLda 70 (171)
.+|.|.-++|++.+......++|-++
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l 28 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDV 28 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHH
Confidence 45667779999988888888876544
No 124
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=21.20 E-value=2.5e+02 Score=18.86 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCEEEEEecCCchHHHH
Q psy1435 42 DEIVNITFIDKDGKRREIKGKVGDNVLYL 70 (171)
Q Consensus 42 ~~mv~Vtfv~~~G~~~~v~~~~G~tLLda 70 (171)
...+.|.|.-+||++.+-.....+||-++
T Consensus 4 ~~~~~I~vRlpdG~~l~~~F~~~~tl~~l 32 (82)
T PF00789_consen 4 SDVVRIQVRLPDGSRLQRRFPKSDTLQDL 32 (82)
T ss_dssp SSEEEEEEEETTSTEEEEEEETTSBHHHH
T ss_pred CCEEEEEEECCCCCEEEEEECCcchHHHH
Confidence 44577888889999988888888877544
No 125
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=21.00 E-value=50 Score=26.91 Aligned_cols=30 Identities=20% Similarity=0.341 Sum_probs=19.4
Q ss_pred hHHHHHHHCC--CCC------cCCCCCCccccccEEEEe
Q psy1435 66 NVLYLAHRYE--IPM------EGACEASLACTTCHVYVK 96 (171)
Q Consensus 66 tLLdaa~~~g--I~i------~~~CgG~G~CgtC~V~V~ 96 (171)
.+.+.+++.| +.+ .-.|| .|.||+|.+...
T Consensus 192 ~~~~~l~~~g~~~~~~~s~~~~m~Cg-~G~C~~C~~~~~ 229 (243)
T cd06192 192 AVVEALDEWLQLIKASVSNNSPMCCG-IGICGACTIETK 229 (243)
T ss_pred HHHHHHHhhcCCceEEEECCccccCc-cccccceEEEeC
Confidence 5556666664 222 23566 699999999754
No 126
>PRK05802 hypothetical protein; Provisional
Probab=20.22 E-value=82 Score=27.52 Aligned_cols=30 Identities=17% Similarity=0.402 Sum_probs=20.5
Q ss_pred hHHHHHHH--CCCCC------cCCCCCCccccccEEEEe
Q psy1435 66 NVLYLAHR--YEIPM------EGACEASLACTTCHVYVK 96 (171)
Q Consensus 66 tLLdaa~~--~gI~i------~~~CgG~G~CgtC~V~V~ 96 (171)
.+.+.+.+ .+|++ .-.|| .|.||.|.|...
T Consensus 268 ~v~~~l~~~~~~i~~~~Sle~~M~CG-~G~Cg~C~v~~~ 305 (320)
T PRK05802 268 KIIEYLDKLNEKIKLSCSNNAKMCCG-EGICGACTVRYG 305 (320)
T ss_pred HHHHHHhhhcCCceEEEeCCCeeeCc-CccCCeeEEEEC
Confidence 34555666 67764 23465 699999999963
No 127
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=20.21 E-value=1.8e+02 Score=18.73 Aligned_cols=25 Identities=8% Similarity=0.126 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHH
Q psy1435 45 VNITFIDKDGKRREIKGKVGDNVLYL 70 (171)
Q Consensus 45 v~Vtfv~~~G~~~~v~~~~G~tLLda 70 (171)
++|+|.. .|+.+++++....|+.+.
T Consensus 1 i~i~vk~-~g~~~~i~v~~~~tv~~l 25 (71)
T cd01812 1 IRVRVKH-GGESHDLSISSQATFGDL 25 (71)
T ss_pred CEEEEEE-CCEEEEEEECCCCcHHHH
Confidence 3566664 488888999999988765
Done!