Query psy1435
Match_columns 171
No_of_seqs 143 out of 1212
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 17:38:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1435.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1435hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hui_A Ferredoxin; cytochrome 100.0 9.4E-30 3.2E-34 194.5 9.5 111 38-159 15-126 (126)
2 2bt6_A Adrenodoxin 1; rutheniu 100.0 2.1E-29 7.2E-34 185.7 9.1 105 40-155 2-108 (108)
3 2y5c_A Adrenodoxin-like protei 100.0 2.5E-29 8.6E-34 185.7 9.4 108 41-159 2-109 (109)
4 3n9z_C Adrenodoxin; cytochrome 100.0 1.6E-30 5.5E-35 197.9 1.1 110 41-161 2-113 (123)
5 3lxf_A Ferredoxin; iron, iron- 100.0 1.2E-28 4.1E-33 181.7 9.9 102 45-157 1-103 (104)
6 1xlq_A Putidaredoxin, PDX; [2F 99.9 1.4E-26 4.9E-31 169.7 10.8 102 46-158 2-105 (106)
7 1uwm_A Ferredoxin VI, FDVI; el 99.9 8.5E-27 2.9E-31 170.9 9.0 103 45-158 1-105 (106)
8 2wlb_A ETP1-FD, electron trans 99.9 3.5E-26 1.2E-30 166.9 8.9 102 43-155 2-103 (103)
9 1b9r_A Protein (terpredoxin); 99.9 7.7E-27 2.6E-31 170.9 4.3 102 45-157 1-104 (105)
10 3ah7_A [2Fe-2S]ferredoxin; [2F 99.9 1E-25 3.5E-30 167.1 9.9 109 44-166 1-112 (113)
11 1i7h_A Ferredoxin; 2Fe-2S,elec 99.9 6.2E-23 2.1E-27 151.8 9.6 106 44-163 1-109 (111)
12 1l5p_A Ferredoxin; [2Fe-2S] cl 99.9 1.9E-22 6.4E-27 145.1 9.1 91 46-154 2-93 (93)
13 1jq4_A Methane monooxygenase c 99.8 2E-20 7E-25 135.1 1.1 95 43-157 3-97 (98)
14 1frr_A Ferredoxin I; electron 99.8 1.3E-19 4.6E-24 129.6 4.8 93 44-159 1-93 (95)
15 1czp_A Ferredoxin I; [2Fe-2S] 99.8 2.3E-19 7.8E-24 129.8 5.6 93 45-159 3-96 (98)
16 1a70_A Ferredoxin; iron-sulfur 99.8 1.8E-19 6.2E-24 130.2 4.4 93 45-160 3-95 (97)
17 1awd_A Ferredoxin; electron tr 99.8 2E-19 6.9E-24 129.1 4.5 91 46-159 2-92 (94)
18 1wri_A Ferredoxin II, ferredox 99.8 3.7E-19 1.3E-23 127.7 3.9 91 44-158 1-91 (93)
19 1iue_A Ferredoxin; electron tr 99.7 4.2E-19 1.4E-23 128.5 3.8 93 45-160 3-95 (98)
20 1frd_A Heterocyst [2Fe-2S] fer 99.7 9.3E-19 3.2E-23 126.2 5.4 93 45-159 3-96 (98)
21 1krh_A Benzoate 1,2-dioxygenas 99.7 8.5E-18 2.9E-22 142.7 5.9 96 44-157 3-98 (338)
22 1doi_A 2Fe-2S ferredoxin; halo 99.7 1.5E-18 5.3E-23 132.4 -1.4 105 31-157 12-118 (128)
23 3zyy_X Iron-sulfur cluster bin 99.6 1.1E-16 3.8E-21 149.3 4.6 93 43-159 2-94 (631)
24 2pia_A Phthalate dioxygenase r 99.5 4E-14 1.4E-18 120.0 9.9 105 19-154 217-321 (321)
25 3i9v_3 NADH-quinone oxidoreduc 98.6 7.1E-08 2.4E-12 91.2 7.3 86 44-155 1-96 (783)
26 1t3q_A Quinoline 2-oxidoreduct 98.2 2.4E-06 8.1E-11 67.3 7.3 50 46-98 11-62 (168)
27 3c8y_A Iron hydrogenase 1; dit 98.2 1.5E-06 5.2E-11 79.7 6.6 68 44-154 1-74 (574)
28 1kf6_B Fumarate reductase iron 98.2 2.7E-06 9.4E-11 69.3 6.4 40 57-98 26-71 (243)
29 3hrd_D Nicotinate dehydrogenas 97.7 8.3E-05 2.8E-09 58.5 6.5 49 46-96 5-55 (160)
30 1rm6_C 4-hydroxybenzoyl-COA re 97.6 0.00012 4.3E-09 57.3 6.4 47 47-95 5-53 (161)
31 1n62_A Carbon monoxide dehydro 97.5 0.00019 6.4E-09 56.7 6.8 49 46-96 5-55 (166)
32 1ffv_A CUTS, iron-sulfur prote 97.5 0.00019 6.4E-09 56.6 6.8 48 47-96 6-55 (163)
33 2bs2_B Quinol-fumarate reducta 97.3 0.00031 1.1E-08 57.0 5.5 40 57-98 26-71 (241)
34 2h88_B Succinate dehydrogenase 96.9 0.001 3.5E-08 54.6 5.4 56 41-98 8-79 (252)
35 2wdq_B Succinate dehydrogenase 96.9 0.0011 3.7E-08 53.6 5.5 40 57-98 23-69 (238)
36 1vlb_A Aldehyde oxidoreductase 96.5 0.0045 1.5E-07 59.8 6.8 51 44-96 1-53 (907)
37 3nvw_A Xanthine dehydrogenase/ 96.4 0.0043 1.5E-07 49.0 5.0 51 43-97 3-56 (164)
38 1dgj_A Aldehyde oxidoreductase 96.2 0.0049 1.7E-07 59.5 5.4 51 44-96 1-53 (907)
39 2w3s_A Xanthine dehydrogenase; 96.0 0.0075 2.6E-07 54.2 5.6 49 47-97 3-53 (462)
40 3vr8_B Iron-sulfur subunit of 96.0 0.017 6E-07 48.8 7.4 40 56-96 56-102 (282)
41 1y56_A Hypothetical protein PH 94.7 0.034 1.2E-06 49.1 5.0 48 44-96 15-67 (493)
42 2gag_A Heterotetrameric sarcos 92.8 0.13 4.4E-06 49.5 5.7 48 45-96 21-79 (965)
43 3unc_A Xanthine dehydrogenase/ 90.2 0.29 9.8E-06 49.2 5.1 48 47-96 6-56 (1332)
44 3zyv_A AOH1; oxidoreductase, m 85.0 0.87 3E-05 45.7 5.0 49 47-97 10-61 (1335)
45 3u7z_A Putative metal binding 83.7 1.7 5.7E-05 31.5 4.8 33 42-75 6-40 (101)
46 2al3_A TUG long isoform; TUG U 82.9 0.79 2.7E-05 32.7 2.7 39 38-77 4-46 (90)
47 2l05_A Serine/threonine-protei 80.7 2.3 8E-05 30.6 4.5 53 37-97 11-64 (95)
48 3dbh_I NEDD8; cell cycle, acti 73.5 8.1 0.00028 25.3 5.5 42 37-78 5-50 (88)
49 1uh6_A Ubiquitin-like 5; beta- 72.6 4.2 0.00014 29.1 4.1 40 40-79 24-67 (100)
50 3plu_A Ubiquitin-like modifier 72.5 4.9 0.00017 28.6 4.3 39 40-78 17-59 (93)
51 1wxm_A A-RAF proto-oncogene se 71.3 3.7 0.00013 29.0 3.4 48 42-97 7-54 (86)
52 3kdv_A DDRB, DNA damage respon 69.2 4.2 0.00014 32.0 3.6 34 43-76 6-39 (184)
53 1rrb_A RAF-1 RBD, RAF proto-on 67.6 3.5 0.00012 30.2 2.7 46 44-97 20-65 (107)
54 3ny5_A Serine/threonine-protei 67.2 5.6 0.00019 28.6 3.7 49 41-97 12-60 (96)
55 1c1y_B Proto-onkogene serine/t 66.4 5.8 0.0002 27.4 3.5 44 45-96 4-47 (77)
56 3hvz_A Uncharacterized protein 59.6 12 0.00039 25.4 4.0 31 47-79 8-38 (78)
57 1wwt_A Threonyl-tRNA synthetas 59.5 18 0.00061 24.1 5.0 37 42-82 9-46 (88)
58 2gow_A HCG-1 protein, ubiquiti 58.7 19 0.00063 26.5 5.3 31 40-70 13-43 (125)
59 4hcn_B Polyubiquitin, ubiquiti 54.4 14 0.0005 25.1 3.9 42 37-78 15-60 (98)
60 3v6c_B Ubiquitin; structural g 53.4 29 0.00098 23.0 5.3 39 40-78 13-55 (91)
61 2dzi_A Ubiquitin-like protein 50.2 34 0.0012 21.7 5.1 36 42-77 5-44 (81)
62 1v2y_A 3300001G02RIK protein; 50.0 30 0.001 24.6 5.1 29 42-70 5-33 (105)
63 2kmm_A Guanosine-3',5'-BIS(dip 47.0 22 0.00074 22.5 3.7 27 50-78 6-32 (73)
64 1wgh_A Ubiquitin-like 3, HCG-1 44.8 39 0.0013 24.4 5.1 30 41-70 13-42 (116)
65 4dwf_A HLA-B-associated transc 44.7 36 0.0012 22.3 4.6 28 43-70 4-31 (90)
66 2l32_A Small archaeal modifier 43.7 50 0.0017 21.8 5.1 33 45-79 3-35 (74)
67 3mtn_B UBA80, ubcep1, ubiquiti 43.2 37 0.0013 21.6 4.4 35 44-78 3-41 (85)
68 2hj8_A Interferon-induced 17 k 42.4 36 0.0012 22.5 4.4 35 43-77 3-41 (88)
69 3phx_B Ubiquitin-like protein 42.1 42 0.0014 21.3 4.5 35 44-78 4-42 (79)
70 1wgr_A Growth factor receptor- 42.1 65 0.0022 22.9 5.8 33 45-77 10-42 (100)
71 2lxa_A Ubiquitin-like protein 41.3 15 0.00051 25.1 2.2 27 44-70 1-29 (87)
72 1e0g_A Membrane-bound lytic mu 39.4 16 0.00056 21.1 1.9 20 59-78 5-24 (48)
73 1wh3_A 59 kDa 2'-5'-oligoadeny 39.3 47 0.0016 21.5 4.5 35 43-77 6-44 (87)
74 3u30_A Ubiquitin, linear DI-ub 39.3 33 0.0011 25.5 4.1 42 37-78 13-58 (172)
75 2wyq_A HHR23A, UV excision rep 39.0 46 0.0016 21.4 4.4 27 44-70 5-31 (85)
76 3m62_B UV excision repair prot 38.8 21 0.00073 24.8 2.8 27 44-70 1-27 (106)
77 4eew_A Large proline-rich prot 38.4 47 0.0016 21.6 4.4 37 42-78 15-55 (88)
78 1ep3_B Dihydroorotate dehydrog 38.3 19 0.00063 28.4 2.7 29 66-96 205-239 (262)
79 2uyz_B Small ubiquitin-related 37.0 41 0.0014 21.4 3.8 33 45-77 4-40 (79)
80 1wyw_B Ubiquitin-like protein 35.7 43 0.0015 22.7 4.0 37 41-77 18-58 (97)
81 1yqb_A Ubiquilin 3; structural 34.6 59 0.002 22.2 4.6 40 37-77 15-58 (100)
82 1wia_A Hypothetical ubiquitin- 34.5 60 0.0021 21.5 4.5 32 42-73 5-36 (95)
83 1wy8_A NP95-like ring finger p 34.3 82 0.0028 20.4 5.1 36 42-77 5-46 (89)
84 2bb6_A TCII, TC II, transcobal 33.5 83 0.0028 27.8 6.3 31 45-75 319-350 (414)
85 3n3k_B Ubiquitin; hydrolase, p 32.5 38 0.0013 21.6 3.1 35 44-78 3-41 (85)
86 1ndd_A NEDD8, protein (ubiquit 30.0 66 0.0022 19.8 3.9 32 46-77 2-37 (76)
87 1ttn_A DC-UBP, dendritic cell- 29.9 74 0.0025 21.8 4.4 30 41-70 20-49 (106)
88 2ojr_A Ubiquitin; lanthide-bin 29.3 82 0.0028 21.8 4.6 36 42-77 33-72 (111)
89 1wx7_A Ubiquilin 3; ubiquitin- 29.2 98 0.0033 21.1 5.0 33 37-70 10-42 (106)
90 2kk8_A Uncharacterized protein 29.1 79 0.0027 20.8 4.3 33 45-77 11-47 (84)
91 1wx8_A Riken cDNA 4931431F19; 29.0 88 0.003 20.7 4.6 37 41-78 14-54 (96)
92 2dzk_A UBX domain-containing p 28.6 1.2E+02 0.0042 21.2 5.5 33 38-70 7-39 (109)
93 2klc_A Ubiquilin-1; ubiquitin- 28.3 86 0.0029 21.3 4.5 43 32-77 15-61 (101)
94 1wxv_A BAG-family molecular ch 27.4 1.2E+02 0.0041 19.8 5.1 36 41-77 4-48 (92)
95 3a9j_A Ubiquitin; protein comp 27.2 77 0.0026 19.4 3.8 25 46-70 2-26 (76)
96 1v86_A DNA segment, CHR 7, way 27.1 94 0.0032 20.9 4.5 39 38-77 11-53 (95)
97 2hj1_A Hypothetical protein; s 27.0 44 0.0015 23.5 2.8 33 45-77 15-48 (97)
98 1tke_A Threonyl-tRNA synthetas 26.8 43 0.0015 26.2 3.0 28 44-75 1-28 (224)
99 3fcg_A F1 capsule-anchoring pr 25.1 1.7E+02 0.0057 20.3 5.5 47 14-62 31-79 (90)
100 4fbj_B NEDD8; effector-HOST ta 24.7 87 0.003 20.6 3.9 33 46-78 2-38 (88)
101 1wgg_A Ubiquitin carboxyl-term 24.5 90 0.0031 21.1 4.0 38 40-78 3-45 (96)
102 2djp_A Hypothetical protein SB 24.4 29 0.00099 22.4 1.3 21 58-78 17-37 (77)
103 3k9o_B Ubiquitin, UBB+1; E2-25 23.6 93 0.0032 20.4 3.9 33 46-78 3-39 (96)
104 3vdz_A Ubiquitin-40S ribosomal 23.3 1.1E+02 0.0038 21.1 4.4 36 43-78 34-73 (111)
105 2io0_B Small ubiquitin-related 23.1 1.1E+02 0.0038 20.8 4.3 36 43-78 4-43 (91)
106 1wgd_A Homocysteine-responsive 22.8 1E+02 0.0035 20.3 4.0 28 43-70 6-35 (93)
107 2bwf_A Ubiquitin-like protein 22.8 1E+02 0.0036 19.0 3.8 32 45-77 5-40 (77)
108 3a4r_A Nfatc2-interacting prot 22.2 1.7E+02 0.0057 19.0 5.6 35 43-77 6-45 (79)
109 1wm3_A Ubiquitin-like protein 22.0 1.3E+02 0.0046 19.0 4.3 34 45-78 2-39 (72)
110 1xn7_A Hypothetical protein YH 21.6 40 0.0014 22.6 1.6 25 67-92 36-65 (78)
111 2io1_B Small ubiquitin-related 21.6 1.2E+02 0.0042 20.6 4.3 35 43-77 6-44 (94)
112 1tyg_B YJBS; alpha beta barrel 21.4 59 0.002 22.3 2.5 31 42-77 18-49 (87)
113 1j8c_A Ubiquitin-like protein 20.9 1.9E+02 0.0065 20.5 5.3 35 42-77 30-68 (125)
114 2kan_A Uncharacterized protein 20.3 1.6E+02 0.0056 19.6 4.6 37 40-77 11-51 (94)
No 1
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=99.96 E-value=9.4e-30 Score=194.54 Aligned_cols=111 Identities=35% Similarity=0.650 Sum_probs=102.9
Q ss_pred CCCCCCceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCC-CcCCCCCCccccccEEEEecCCccCCCCCChHHHhhccc
Q psy1435 38 PKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDL 116 (171)
Q Consensus 38 p~~~~~mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~-i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~ 116 (171)
-+.+++|++|+|++++|++++|++.+|+|||++|+++||+ +++.|+|.|.||+|+|+|.+|+++.++++++.|.++|+.
T Consensus 15 ~~~~~~M~~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~gi~~~C~G~G~CgtC~v~v~~G~~~~l~~~~~~E~~~L~~ 94 (126)
T 3hui_A 15 VPRGSHMAKINFVDHTGETRTVEVEEGATVMEAAIRNAIPGVEAECGGACACATCHVYVDEAWREKVGGPSPMEEDMLDF 94 (126)
T ss_dssp CCTTCSEEEEEEECTTSCEEEEEEETTSBHHHHHHTTTCTTCCCTTSSSSCCSTTEEEECGGGHHHHCCCCHHHHHHHTT
T ss_pred cCCCCCceEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCCCCCCCCCEEEECCCcccccCCCCHHHhhhcCc
Confidence 3578899999999999988899999999999999999999 999999999999999999999888889999999999985
Q ss_pred CCCCCCCeeeccccccCCCceeeeEEEecCCCceEEEeCCCcc
Q psy1435 117 APFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKATR 159 (171)
Q Consensus 117 ~~~~~~g~R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~~~~ 159 (171)
+.++++|+| ||||+++.+||||++|++|+.++
T Consensus 95 ~~e~~~g~R-----------LaCQ~~~~~dldgl~V~lp~~~r 126 (126)
T 3hui_A 95 GYDVRPNSR-----------LSCQIKVSNELDGLIVTTPERQR 126 (126)
T ss_dssp SSSCCTTEE-----------EGGGCBCCGGGTTEEEECCSCCC
T ss_pred hhhccCCeE-----------EeeeCEECcCCCcEEEEecCcCC
Confidence 457889999 99999999999999999998754
No 2
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=99.96 E-value=2.1e-29 Score=185.65 Aligned_cols=105 Identities=40% Similarity=0.789 Sum_probs=96.4
Q ss_pred CCCCceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCc--CCCCCCccccccEEEEecCCccCCCCCChHHHhhcccC
Q psy1435 40 SEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPME--GACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLA 117 (171)
Q Consensus 40 ~~~~mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~--~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~ 117 (171)
+..+|++|+|++++|+.++|++.+|+|||++|+++||+++ +.|+|.|.||+|||+|.+|+++.++++++.|..+|+.+
T Consensus 2 ~~~~m~~V~~~~~~g~~~~v~~~~g~tLL~aa~~~gi~i~~~~~Cgg~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~ 81 (108)
T 2bt6_A 2 SSGDKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLA 81 (108)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTCBHHHHHHHTTCCCTTTTTTSSSSSBSTTEEECCHHHHTTSCCCCHHHHHHHTTC
T ss_pred CCCceEEEEEECCCCCEEEEEECCCChHHHHHHHcCCCCCcccCCCCCcCcCCCEEEECccccccCCCCCHHHHHHHhCc
Confidence 4567999999989999888999999999999999999999 99999999999999999998888999999999999865
Q ss_pred CCCCCCeeeccccccCCCceeeeEEEecCCCceEEEeC
Q psy1435 118 PFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLP 155 (171)
Q Consensus 118 ~~~~~g~R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp 155 (171)
.++++|+| ||||+++.+|+||++|++|
T Consensus 82 ~~~~~g~r-----------LaCq~~~~~d~d~~~V~~p 108 (108)
T 2bt6_A 82 YGLTDRSR-----------LGCQICLTKAMDNMTVRVP 108 (108)
T ss_dssp TTCCTTEE-----------EGGGCBCCGGGTTEEEECC
T ss_pred ccCCCCcE-----------eeEEEEecCCCCCEEEEcC
Confidence 67889999 9999999999999999987
No 3
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=99.96 E-value=2.5e-29 Score=185.73 Aligned_cols=108 Identities=63% Similarity=1.109 Sum_probs=99.3
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEecCCccCCCCCChHHHhhcccCCCC
Q psy1435 41 EDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFL 120 (171)
Q Consensus 41 ~~~mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~~~ 120 (171)
+++|++|+|++++|+.++|++.+|+|||++|+++||++++.|+|+|.||+|||+|.+|+++.++++++.|..+|+...++
T Consensus 2 ~~~m~~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~ 81 (109)
T 2y5c_A 2 ASDVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACSTCHVYVSEDHLDLLPPPEEREDDMLDMAPLL 81 (109)
T ss_dssp -CCEEEEEEECTTSCEEEEEEETTCBHHHHHHHTTCCCCCTTSSSSSCCTTEEEECHHHHTTSCCCCHHHHHHHHTSTTC
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCcCcCccEEEECCcchhhcCCCCHHHHHHHhccccC
Confidence 46799999998999988999999999999999999999999999999999999999998888899999999999854578
Q ss_pred CCCeeeccccccCCCceeeeEEEecCCCceEEEeCCCcc
Q psy1435 121 KDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKATR 159 (171)
Q Consensus 121 ~~g~R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~~~~ 159 (171)
++|+| ||||+++.+|+||++|++|+.++
T Consensus 82 ~~g~r-----------LaCq~~~~~d~~~~~v~ip~~~~ 109 (109)
T 2y5c_A 82 QENSR-----------LGCQIVLTPELEGAEFTLPKITR 109 (109)
T ss_dssp CTTEE-----------EGGGCBCCGGGTTCEEECCSCCC
T ss_pred CCCcE-----------eeEEeEEecCCCeEEEEecCCCC
Confidence 89999 99999999999999999997653
No 4
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A
Probab=99.96 E-value=1.6e-30 Score=197.92 Aligned_cols=110 Identities=38% Similarity=0.747 Sum_probs=26.0
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCc--CCCCCCccccccEEEEecCCccCCCCCChHHHhhcccCC
Q psy1435 41 EDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPME--GACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAP 118 (171)
Q Consensus 41 ~~~mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~--~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~ 118 (171)
.++|++|+|++++|+.++|++.+|+|||++|+++||+++ +.|||.|.||||||+|.+++++.++++++.|.++|+.+.
T Consensus 2 ~~~~v~Vtf~~~~G~~~~v~~~~G~tLl~aa~~~gi~i~g~~~CgG~g~CgtC~v~v~~~~~~~l~~~~~~E~~~L~~~~ 81 (123)
T 3n9z_C 2 SEDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAY 81 (123)
T ss_dssp -----------------------------------------CTTCSSSSCSTTBC--------------CHHHHHHCC--
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCCCCEeCCCeeEEeccccccCCCCChHHHhhhcccc
Confidence 578999999999999889999999999999999999999 999999999999999998778889999999999998656
Q ss_pred CCCCCeeeccccccCCCceeeeEEEecCCCceEEEeCCCcccc
Q psy1435 119 FLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKATRNF 161 (171)
Q Consensus 119 ~~~~g~R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~~~~~~ 161 (171)
++.+|+| ||||+++.++|||++|+||+.+.+.
T Consensus 82 ~~~~~~R-----------LaCQ~~v~~~ld~l~V~ip~~~~~~ 113 (123)
T 3n9z_C 82 GLTDRSR-----------LGCQICLTKSMDNMTVRVPETVADA 113 (123)
T ss_dssp ------C-----------BCC----------------------
T ss_pred cccCCeE-----------EeeEeEEccCCCCEEEEECcccccc
Confidence 7788999 9999999999999999999988754
No 5
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=99.95 E-value=1.2e-28 Score=181.71 Aligned_cols=102 Identities=33% Similarity=0.587 Sum_probs=96.0
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHHHHHCCCC-CcCCCCCCccccccEEEEecCCccCCCCCChHHHhhcccCCCCCCC
Q psy1435 45 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN 123 (171)
Q Consensus 45 v~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~-i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~~~~~g 123 (171)
++|||++++|+.++|++.+|+|||++|+++|++ +++.|+|.|.||+|||+|.+|+++.++++++.|..+|+.+.++++|
T Consensus 1 ~~vt~~~~~G~~~~~~~~~g~tll~a~~~~gi~~i~~~C~G~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~g 80 (104)
T 3lxf_A 1 TAILVTTRDGTRTEIQAEPGLSLMEALRDAGIDELLALCGGCCSCATCHVLVAPAFADRLPALSGDENDLLDSSDHRTPH 80 (104)
T ss_dssp CEEEEECTTSCEEEEECCTTSBHHHHHHHTTCTTCCCTTCSSSSCSTTEEEECGGGGGGSCCCCHHHHHHHHTSTTCCTT
T ss_pred CEEEEEeCCCCEEEEEECCCChHHHHHHHcCCCCCCcCCCCCCCCCCCEEEECCcccccCCCCCHHHHHHhccccccCCC
Confidence 379999999999999999999999999999999 9999999999999999999998888999999999999865678899
Q ss_pred eeeccccccCCCceeeeEEEecCCCceEEEeCCC
Q psy1435 124 SRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKA 157 (171)
Q Consensus 124 ~R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~~ 157 (171)
+| ||||+++.+||||++|++|+.
T Consensus 81 ~r-----------LaCq~~~~~dl~gl~v~ip~~ 103 (104)
T 3lxf_A 81 SR-----------LSCQITINDKLEGLEVEIAPE 103 (104)
T ss_dssp EE-----------EGGGCBCCGGGTTCEEEECCC
T ss_pred cE-----------EEeeCEEccCCCCEEEEecCC
Confidence 99 999999999999999999975
No 6
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=99.94 E-value=1.4e-26 Score=169.75 Aligned_cols=102 Identities=39% Similarity=0.690 Sum_probs=93.8
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHHHHHCCCC-CcCCCCCCccccccEEEEecCCccCCCCCChHHHhhcccCCCC-CCC
Q psy1435 46 NITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFL-KDN 123 (171)
Q Consensus 46 ~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~-i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~~~-~~g 123 (171)
+|+|+.++|..++|++.+|+|||++|+++||+ +++.|+|.|.||+|+|+|.+|+++.++++++.|.++|+...+. ++|
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlLeaa~~~gi~~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~~g 81 (106)
T 1xlq_A 2 KVVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVTAELKPN 81 (106)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHTTCTTSCCTTCSSSSSCTTEEEECTTTGGGSCCCCHHHHHHHTTCSSCCCTT
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCCcCCCCCcccCcCEEEECCcccccCCCCCHHHHHHhhcccccCCCC
Confidence 68888889988889999999999999999999 9999998899999999999998888999999999999865446 899
Q ss_pred eeeccccccCCCceeeeEEEecCCCceEEEeCCCc
Q psy1435 124 SRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKAT 158 (171)
Q Consensus 124 ~R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~~~ 158 (171)
+| ||||+++.+|++|++|++|+..
T Consensus 82 ~r-----------LaCq~~~~~d~~~l~v~~p~~~ 105 (106)
T 1xlq_A 82 SR-----------LCCQIIMTPELDGIVVDVPDRQ 105 (106)
T ss_dssp EE-----------EGGGCBCCGGGTTEEEECCSCC
T ss_pred cE-----------eeeeeEeecCCCCEEEEecCcc
Confidence 99 9999999999999999998753
No 7
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=99.94 E-value=8.5e-27 Score=170.93 Aligned_cols=103 Identities=38% Similarity=0.692 Sum_probs=94.4
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHHHHHCCCC-CcCCCCCCccccccEEEEecCCccCCCCCChHHHhhcccCCCCC-C
Q psy1435 45 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLK-D 122 (171)
Q Consensus 45 v~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~-i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~~~~-~ 122 (171)
++|+|+.++|..++|++.+|+|||++|+++||+ +++.|+|.|.||+|+|+|.+|+++.++++++.|..+|+...+.+ +
T Consensus 1 ~~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~~ 80 (106)
T 1uwm_A 1 AKIIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAYEPNPA 80 (106)
T ss_dssp CEEEEECTTCCEEEEECCTTSBHHHHHHTTTCTTCCCTTSSSSSSCTTEEEECHHHHTTSCCCCHHHHHHHTTSSSCCTT
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCcccCCCCCCCcCcCEEEECCcccccCCCCCHHHHHHhcCccccCCC
Confidence 468998899988889999999999999999999 99999988999999999999988889999999999998754677 9
Q ss_pred CeeeccccccCCCceeeeEEEecCCCceEEEeCCCc
Q psy1435 123 NSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKAT 158 (171)
Q Consensus 123 g~R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~~~ 158 (171)
|+| ||||+++.+|++|++|++|+.+
T Consensus 81 g~r-----------LaCq~~~~~d~~~l~v~~p~~~ 105 (106)
T 1uwm_A 81 TSR-----------LTCQIKVTSLLDGLVVHLPEKQ 105 (106)
T ss_dssp TEE-----------EGGGCBCCGGGTTEEEECCSCC
T ss_pred CcE-----------ecccCEEccCCCCEEEEecCCC
Confidence 999 9999999999999999998653
No 8
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=99.93 E-value=3.5e-26 Score=166.85 Aligned_cols=102 Identities=48% Similarity=0.863 Sum_probs=94.2
Q ss_pred CceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEecCCccCCCCCChHHHhhcccCCCCCC
Q psy1435 43 EIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKD 122 (171)
Q Consensus 43 ~mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~~~~~ 122 (171)
++++|+|.+++|+.++|++.+|+|||++|+++|+++++.|+|.|.||+|+|+|.+|+++.++++++.|.++|+.+.+.++
T Consensus 2 ~~~~v~~~~~~g~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~g~~~~~~~~~~~E~~~L~~~~~~~~ 81 (103)
T 2wlb_A 2 TGIKVFFVTPEGREIMIEGNEGDSILDLAHANNIDLEGACEGSVACSTCHVIVDPEHYELLDPPEEDEEDMLDLAFGLEE 81 (103)
T ss_dssp CCEEEEEECTTCCEEEEEECTTCBHHHHHHHTTCCCCCTTTTSSCCSTTEEEECHHHHHHSCCCCHHHHHHHTTBTTCCT
T ss_pred CceEEEEEeCCCCEEEEEECCCCHHHHHHHHcCCCcCcCCCCCCCcCCCEEEECCCchhccCCCCHHHHHHHhcccCCCC
Confidence 45789998889988889999999999999999999999999889999999999999878788899999999987556789
Q ss_pred CeeeccccccCCCceeeeEEEecCCCceEEEeC
Q psy1435 123 NSRLGCQNVMYNSRLGCQIILTKELEGIEVTLP 155 (171)
Q Consensus 123 g~R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp 155 (171)
|+| ||||+++.+|+|+++|++|
T Consensus 82 g~r-----------LaCq~~~~~d~~~l~v~lp 103 (103)
T 2wlb_A 82 TSR-----------LGCQVLLRKDLDGIRVRIP 103 (103)
T ss_dssp TEE-----------EGGGCBCCGGGTTEEEECC
T ss_pred CcE-----------eeEeeEeCCCCCcEEEEcC
Confidence 999 9999999999999999987
No 9
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=99.93 E-value=7.7e-27 Score=170.90 Aligned_cols=102 Identities=23% Similarity=0.561 Sum_probs=92.6
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHHHHHCCCC-CcCCCCCCccccccEEEEecCCccCCCCCChHHHhhcc-cCCCCCC
Q psy1435 45 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLD-LAPFLKD 122 (171)
Q Consensus 45 v~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~-i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~-~~~~~~~ 122 (171)
++|+|+.++|++++|++.+|+|||++|+++||+ +++.|+|.|.||+|||+|.+|+++.++++++.|.++|+ ...+.++
T Consensus 1 ~~V~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~~G~~~~l~~~~~~e~~~L~~~~~~~~~ 80 (105)
T 1b9r_A 1 PRVVFIDEQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQSTGEPMTA 80 (105)
T ss_dssp CEEEECCTTTSCEEEECCTTCCTTHHHHHHTCCCCCCSSTTSSCCCCCCCEECTTTHHHHTCCCTTHHHHHHTSCCCCCT
T ss_pred CEEEEEeCCCCEEEEEECCCChHHHHHHHcCCCCcCcCCCCCCCcCcCEEEECCcccccCCCCCHHHHHHhhcccccCCC
Confidence 468887789977889999999999999999999 99999999999999999999988888889999999998 3356789
Q ss_pred CeeeccccccCCCceeeeEEEecCCCceEEEeCCC
Q psy1435 123 NSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKA 157 (171)
Q Consensus 123 g~R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~~ 157 (171)
|+| ||||+++.++++|++|++|+.
T Consensus 81 g~r-----------LaCq~~~~~~~~~l~v~~p~~ 104 (105)
T 1b9r_A 81 GTR-----------LSCQVFIDPSMDGLIVRVPLP 104 (105)
T ss_dssp TBS-----------CGGGCCCCTTSTTEEEECCSC
T ss_pred CcE-----------eeeeCEecCCCCcEEEEecCC
Confidence 999 999999999999999999863
No 10
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=99.93 E-value=1e-25 Score=167.10 Aligned_cols=109 Identities=38% Similarity=0.628 Sum_probs=95.1
Q ss_pred ceEEEEEcCCC---CEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEecCCccCCCCCChHHHhhcccCCCC
Q psy1435 44 IVNITFIDKDG---KRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFL 120 (171)
Q Consensus 44 mv~Vtfv~~~G---~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~~~ 120 (171)
|++|||++.+| ..++|++.+|+|||++|+++||++++.|+|.|.||+|+|+|.+|+ ..++++++.|..+|+...+.
T Consensus 1 M~~vt~~~~~g~~~~~~~v~~~~g~tlL~aa~~~Gi~i~~~C~g~G~CgtC~v~v~~G~-~~~~~~~~~e~~~L~~~~~~ 79 (113)
T 3ah7_A 1 MPLVTFLPHEKFCPEGLTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIVRKGF-DSLEEADELEEDMLDKAWGL 79 (113)
T ss_dssp CCEEEECCBTTTBTTCEEEECCTTCBHHHHHHHTTCCCCCTTCSSSSCSTTEEEEEESG-GGSCCCCHHHHHHHTTSTTC
T ss_pred CCEEEEEcCCCcCCCCeEEEECCCCcHHHHHHHcCCCCCcCCCCCCCcCCCEEEEcCCc-ccCCCCCHHHHHhhhccccc
Confidence 78999998776 557799999999999999999999999998899999999999995 67888999999999865467
Q ss_pred CCCeeeccccccCCCceeeeEEEecCCCceEEEeCCCcccccccCC
Q psy1435 121 KDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKATRNFYVDGH 166 (171)
Q Consensus 121 ~~g~R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~~~~~~~~~~~ 166 (171)
++|+| ||||+++.++ |++|++|..+.+...+||
T Consensus 80 ~~g~r-----------LaCq~~~~~~--dl~v~~~~~~~~~~~~~~ 112 (113)
T 3ah7_A 80 EAQSR-----------LGCQVFVADE--DLTIEIPKYSLNHAAEAP 112 (113)
T ss_dssp CTTEE-----------EGGGCBCCSS--CEEEECCSCCCCCCC---
T ss_pred CCCcE-----------EeeeCEEeCC--CEEEEECchhhhhhhccC
Confidence 89999 9999999843 699999999999888884
No 11
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=99.88 E-value=6.2e-23 Score=151.78 Aligned_cols=106 Identities=38% Similarity=0.594 Sum_probs=89.9
Q ss_pred ceEEEEEcCCC---CEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEecCCccCCCCCChHHHhhcccCCCC
Q psy1435 44 IVNITFIDKDG---KRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFL 120 (171)
Q Consensus 44 mv~Vtfv~~~G---~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~~~ 120 (171)
|++|+|+..+| ..++|++.+|+|||++|+++|+++++.|+|.|.||+|+|+|.+|+ ..+.++++.|..+|+...+.
T Consensus 1 M~~i~~~~~~g~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~~G~Cg~C~v~v~~G~-~~~~~~~~~e~~~L~~~~~~ 79 (111)
T 1i7h_A 1 MPKIVILPHQDLCPDGAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGF-DSLPESSEQEDDMLDKAWGL 79 (111)
T ss_dssp -CEEEECCBTTTBTTCEEEECCTTCBHHHHHHHTTCCCCCTTSSSSCCSTTEEEEEECG-GGSCCCCHHHHHHHTTCTTC
T ss_pred CCEEEEEeCCCcCCCCeEEEeCCCCcHHHHHHHcCCCCcccCCCCCcCCCCEEEEccCc-ccCCCCCHHHHHHhhhcccc
Confidence 78899987654 446799999999999999999999999987899999999999995 45677889999999864457
Q ss_pred CCCeeeccccccCCCceeeeEEEecCCCceEEEeCCCcccccc
Q psy1435 121 KDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKATRNFYV 163 (171)
Q Consensus 121 ~~g~R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~~~~~~~~ 163 (171)
.+|+| ||||+++.++ |++|++|+.+.+++.
T Consensus 80 ~~g~r-----------LaCq~~~~~~--dl~v~~~~~~~~~~~ 109 (111)
T 1i7h_A 80 EPESR-----------LSCQARVTDE--DLVVEIPRYTINHAR 109 (111)
T ss_dssp CTTEE-----------ETTTCBCCSS--CEEEECCSCCCCTTC
T ss_pred CCCcE-----------EEEEEEEeCC--CEEEEEChHHhhhhc
Confidence 78999 9999999633 699999988877654
No 12
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=99.87 E-value=1.9e-22 Score=145.13 Aligned_cols=91 Identities=24% Similarity=0.407 Sum_probs=81.8
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHHHHHCCCC-CcCCCCCCccccccEEEEecCCccCCCCCChHHHhhcccCCCCCCCe
Q psy1435 46 NITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNS 124 (171)
Q Consensus 46 ~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~-i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~~~~~g~ 124 (171)
+|+| .++|+.++|++.+|+|||++|+++|++ +++.|+|.|.||+|+|+|.+|. ++++++.|...|+ +.++|+
T Consensus 2 ~v~i-~~~g~~~~~~~~~g~tll~a~~~~gi~gi~~~C~G~G~Cg~C~v~v~~g~---~~~~~~~e~~~L~---~~~~g~ 74 (93)
T 1l5p_A 2 TITA-VKGGVKKQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVSGK---VAAAEDDEKEFLE---DQPANA 74 (93)
T ss_dssp EEEE-EETTEEEEEECCTTEEHHHHHHTTTSSCCTTSCSSSSSSCCCEEEEEESC---CCCCCHHHHHHHT---TSCTTE
T ss_pred eEEE-EeCCcEEEEEECCCChHHHHHHHcCCCcCCcCCCCcCCcCCCEEEECCCc---CCCCCHHHHHHhc---CCCCCc
Confidence 4564 478988889999999999999999999 9999998999999999999874 5678899999998 578999
Q ss_pred eeccccccCCCceeeeEEEecCCCceEEEe
Q psy1435 125 RLGCQNVMYNSRLGCQIILTKELEGIEVTL 154 (171)
Q Consensus 125 R~~~~~~~~~~RLACQ~~v~~dl~glvV~v 154 (171)
| ||||+++.+|++|++|+|
T Consensus 75 r-----------LaCq~~~~~d~~g~~v~~ 93 (93)
T 1l5p_A 75 R-----------LACAITLSGENDGAVFEL 93 (93)
T ss_dssp E-----------EGGGCEECGGGTTCEEEC
T ss_pred E-----------EeeECEECCCCCceEEEC
Confidence 9 999999999999999985
No 13
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=99.78 E-value=2e-20 Score=135.10 Aligned_cols=95 Identities=20% Similarity=0.325 Sum_probs=77.6
Q ss_pred CceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEecCCccCCCCCChHHHhhcccCCCCCC
Q psy1435 43 EIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKD 122 (171)
Q Consensus 43 ~mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~~~~~ 122 (171)
.|++|+|.+++|..++|++.+|+|||++|+++|+++++.| |.|.||+|+|+|.+|..+. .+.|...|+. .+.++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C-~~G~Cg~C~v~v~~G~~~~----~~~e~~~L~~-~~~~~ 76 (98)
T 1jq4_A 3 RVHTITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSC-REGGCATCKALCSEGDYDL----KGCSVQALPP-EEEEE 76 (98)
T ss_dssp CEEEEEEEETTTEEEEEEEESCCTHHHHHHHHTCCCCCSC-CSSCCCCCCBCEEECCCCC----CCSCTTTSCH-HHHHH
T ss_pred CcEEEEEEecCCCcEEEEeCCCChHHHHHHHcCCCCcCCC-CCCCCCCCEEEEEcCcccc----CcccccccCH-HHhcC
Confidence 3789999877777788999999999999999999999999 5799999999999886432 2345555653 23456
Q ss_pred CeeeccccccCCCceeeeEEEecCCCceEEEeCCC
Q psy1435 123 NSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKA 157 (171)
Q Consensus 123 g~R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~~ 157 (171)
|+| ||||+++.+| ++|++|+.
T Consensus 77 g~~-----------LaCq~~~~~d---~~v~~~~~ 97 (98)
T 1jq4_A 77 GLV-----------LLCRTYPKTD---LEIELPYT 97 (98)
T ss_dssp HCB-----------CTTTCCSSCC---SEEECSCC
T ss_pred CcE-----------EEeeCEECCC---EEEEecCC
Confidence 788 9999999885 99999864
No 14
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.77 E-value=1.3e-19 Score=129.58 Aligned_cols=93 Identities=19% Similarity=0.262 Sum_probs=74.7
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEecCCccCCCCCChHHHhhcccCCCCCCC
Q psy1435 44 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN 123 (171)
Q Consensus 44 mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~~~~~g 123 (171)
+++|+|..++| .+++++.+|+|||++|+++|+++++.|+ .|.||+|+|+|.+|..+ ..|...|+. .+.++|
T Consensus 1 ~~~v~~~~~~g-~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~------~~~~~~L~~-~~~~~g 71 (95)
T 1frr_A 1 AYKTVLKTPSG-EFTLDVPEGTTILDAAEEAGYDLPFSCR-AGACSSCLGKVVSGSVD------ESEGSFLDD-GQMEEG 71 (95)
T ss_dssp CEEEEEEETTE-EEEEEECTTCCHHHHHHHTTCCCCCSSS-SSSSSTTEEEEEESCEE------CTTCCSCCH-HHHHTT
T ss_pred CeEEEEEeCCC-cEEEEeCCCCcHHHHHHHcCCCCCCCCC-CcCCCCCEEEEEeCCcc------ccccccCCH-HHHhCC
Confidence 36788876788 5679999999999999999999999998 69999999999988543 223344543 234578
Q ss_pred eeeccccccCCCceeeeEEEecCCCceEEEeCCCcc
Q psy1435 124 SRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKATR 159 (171)
Q Consensus 124 ~R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~~~~ 159 (171)
+| ||||+++.+ |++|++++..+
T Consensus 72 ~~-----------LaC~~~~~~---~~~v~~~~~~~ 93 (95)
T 1frr_A 72 FV-----------LTCIAIPES---DLVIETHKEEE 93 (95)
T ss_dssp EE-----------ETTTCEESS---CEEEECCCTTT
T ss_pred cE-----------EeeECEECC---CEEEEEcchhh
Confidence 88 999999998 49999986543
No 15
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=99.77 E-value=2.3e-19 Score=129.75 Aligned_cols=93 Identities=19% Similarity=0.307 Sum_probs=75.3
Q ss_pred eEEEEEcCCCC-EEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEecCCccCCCCCChHHHhhcccCCCCCCC
Q psy1435 45 VNITFIDKDGK-RREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN 123 (171)
Q Consensus 45 v~Vtfv~~~G~-~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~~~~~g 123 (171)
++|+|+.++|. .+++++.+|+|||++|+++|+++++.|+ .|.||+|+|+|.+|+.+ ..|...|+. .+.++|
T Consensus 3 ~~V~~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~------~~e~~~L~~-~e~~~g 74 (98)
T 1czp_A 3 FKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCR-AGACSTCAGKLVSGTVD------QSDQSFLDD-DQIEAG 74 (98)
T ss_dssp EEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSS-SSSSSTTEEEEEESCEE------CTTCCSSCH-HHHHTT
T ss_pred eEEEEEeCCCCCcEEEEeCCCCCHHHHHHHcCCCccCCCC-CCCCCCCeEEEccCCcC------ccccccCCH-HHhhCC
Confidence 67898866654 5679999999999999999999999998 69999999999988643 223344543 234578
Q ss_pred eeeccccccCCCceeeeEEEecCCCceEEEeCCCcc
Q psy1435 124 SRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKATR 159 (171)
Q Consensus 124 ~R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~~~~ 159 (171)
+| ||||+++.+| ++|++|+.++
T Consensus 75 ~~-----------LaCq~~~~~d---~~v~~~~~~~ 96 (98)
T 1czp_A 75 YV-----------LTCVAYPTSD---VVIQTHKEED 96 (98)
T ss_dssp EE-----------EGGGCEESSC---EEEECCCTTT
T ss_pred eE-----------EeeeCEECCC---EEEEeccccc
Confidence 89 9999999985 9999987654
No 16
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=99.77 E-value=1.8e-19 Score=130.21 Aligned_cols=93 Identities=17% Similarity=0.295 Sum_probs=75.2
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEecCCccCCCCCChHHHhhcccCCCCCCCe
Q psy1435 45 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNS 124 (171)
Q Consensus 45 v~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~~~~~g~ 124 (171)
.+|+|..++| .+++++.+|+|||++|+++|+++++.|+ .|.||+|+|+|.+|..+ ..|...|+. .+.++|+
T Consensus 3 ~~v~~~~~~~-~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~------~~e~~~L~~-~e~~~g~ 73 (97)
T 1a70_A 3 YKVTLVTPTG-NVEFQCPDDVYILDAAEEEGIDLPYSCR-AGSCSSCAGKLKTGSLN------QDDQSFLDD-DQIDEGW 73 (97)
T ss_dssp EEEEEEETTE-EEEEEEETTSCHHHHHHHTTCCCCCSSS-SSCSSTTEEEEEESCEE------CTTCCSSCH-HHHHHTE
T ss_pred EEEEEEeCCc-eEEEEeCCCCcHHHHHHHcCCCcccCCC-CcCCCCCeEEEccCCcC------ccccccCCH-HHhhCCe
Confidence 5788875666 5679999999999999999999999998 69999999999988533 234445543 2345788
Q ss_pred eeccccccCCCceeeeEEEecCCCceEEEeCCCccc
Q psy1435 125 RLGCQNVMYNSRLGCQIILTKELEGIEVTLPKATRN 160 (171)
Q Consensus 125 R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~~~~~ 160 (171)
| ||||+++.+| ++|++|+.++.
T Consensus 74 ~-----------LaCq~~~~~d---~~v~~~~~~~~ 95 (97)
T 1a70_A 74 V-----------LTCAAYPVSD---VTIETHKKEEL 95 (97)
T ss_dssp E-----------EGGGCEESSC---EEEECCCGGGC
T ss_pred E-----------EEeECEECCC---EEEEeCchhhc
Confidence 8 9999999985 99999986654
No 17
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=99.77 E-value=2e-19 Score=129.11 Aligned_cols=91 Identities=18% Similarity=0.303 Sum_probs=73.6
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEecCCccCCCCCChHHHhhcccCCCCCCCee
Q psy1435 46 NITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSR 125 (171)
Q Consensus 46 ~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~~~~~g~R 125 (171)
+|+|+.++| .+++++.+|+|||++|+++|+++++.|+ .|.||+|+|+|.+|..+ ..|...|+. .+.++|+|
T Consensus 2 ~v~~~~~~g-~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~------~~e~~~L~~-~e~~~g~~ 72 (94)
T 1awd_A 2 KVTLKTPSG-EETIECPEDTYILDAAEEAGLDLPYSCR-AGACSSCAGKVESGEVD------QSDQSFLDD-AQMGKGFV 72 (94)
T ss_dssp EEEEEETTE-EEEEECCTTSCHHHHHHHTTCCCCCSSS-SSSSSTTEEEEEESCEE------CTTCCSSCH-HHHHTTEE
T ss_pred EEEEEeCCC-cEEEEECCCCcHHHHHHHcCCCCCcCCC-CCcCCCCEEEEEeCCcC------ccccccCCH-HHHhCCcE
Confidence 578776777 5679999999999999999999999998 69999999999988533 234445543 23457889
Q ss_pred eccccccCCCceeeeEEEecCCCceEEEeCCCcc
Q psy1435 126 LGCQNVMYNSRLGCQIILTKELEGIEVTLPKATR 159 (171)
Q Consensus 126 ~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~~~~ 159 (171)
||||+++.+| ++|++|+.++
T Consensus 73 -----------LaCq~~~~~d---~~i~~~~~~~ 92 (94)
T 1awd_A 73 -----------LTCVAYPTSD---VTILTHQEAA 92 (94)
T ss_dssp -----------EGGGCEESSC---EEEECCCGGG
T ss_pred -----------EeeECEECCC---EEEEecchhc
Confidence 9999999984 9999987654
No 18
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.75 E-value=3.7e-19 Score=127.70 Aligned_cols=91 Identities=19% Similarity=0.331 Sum_probs=73.7
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEecCCccCCCCCChHHHhhcccCCCCCCC
Q psy1435 44 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN 123 (171)
Q Consensus 44 mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~~~~~g 123 (171)
|.+|+|..++| .++|++.+|+|||++|+++| ++++.|+ .|.||+|+|+|.+|..+ ..|...|+. .+.++|
T Consensus 1 ~~~V~~~~~~~-~~~~~~~~g~tlL~a~~~~g-~i~~~C~-~G~Cg~C~v~v~~G~~~------~~e~~~L~~-~~~~~g 70 (93)
T 1wri_A 1 AYKVTLKTPDG-DITFDVEPGERLIDIGSEKA-DLPLSCQ-AGACSTCLGKIVSGTVD------QSEGSFLDD-EQIEQG 70 (93)
T ss_dssp CEEEEEEETTE-EEEEEECTTSCHHHHHHHHS-CCCCSSS-SSSSSTTEEEEEESCEE------CTTCCSCCH-HHHHTT
T ss_pred CEEEEEEECCC-eEEEEECCCCcHHHHHHHCc-CCCCCCC-CCCCCCCEEEEecCccC------ccccccCCH-HHHhCC
Confidence 46788876666 56799999999999999999 9999998 69999999999988533 234445543 234578
Q ss_pred eeeccccccCCCceeeeEEEecCCCceEEEeCCCc
Q psy1435 124 SRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKAT 158 (171)
Q Consensus 124 ~R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~~~ 158 (171)
+| ||||+++.+| ++|++|+.+
T Consensus 71 ~~-----------LaCq~~~~~d---~~v~~~~~~ 91 (93)
T 1wri_A 71 YV-----------LTCIAIPESD---VVIETHKED 91 (93)
T ss_dssp EE-----------ETTTCEESSC---EEEECCCGG
T ss_pred cE-----------EeeeCEECCC---EEEEecccc
Confidence 99 9999999986 999998754
No 19
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=99.75 E-value=4.2e-19 Score=128.50 Aligned_cols=93 Identities=20% Similarity=0.343 Sum_probs=74.7
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEecCCccCCCCCChHHHhhcccCCCCCCCe
Q psy1435 45 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNS 124 (171)
Q Consensus 45 v~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~~~~~g~ 124 (171)
.+|+|..++| .++|++.+|+|||++|+++|+++++.|+ .|.||+|+|+|.+|..+ ..|...|+. .+.++|+
T Consensus 3 ~~v~~~~~~~-~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~------~~e~~~L~~-~e~~~g~ 73 (98)
T 1iue_A 3 YNITLRTNDG-EKKIECNEDEYILDASERQNVELPYSCR-GGSCSTCAAKLVEGEVD------NDDQSYLDE-EQIKKKY 73 (98)
T ss_dssp EEEEEEETTE-EEEEEEETTSCHHHHHHHTTCCCCCSSC-SSSSSTTEEEEEESCEE------CTTCCSSCH-HHHHTTE
T ss_pred EEEEEEeCCC-eEEEEeCCCCcHHHHHHHcCCCCCCCCC-CCcCCCCEEEEeeCCcc------ccccccCCH-HHHhCCe
Confidence 5688875555 5679999999999999999999999998 69999999999988643 233445543 2345789
Q ss_pred eeccccccCCCceeeeEEEecCCCceEEEeCCCccc
Q psy1435 125 RLGCQNVMYNSRLGCQIILTKELEGIEVTLPKATRN 160 (171)
Q Consensus 125 R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~~~~~ 160 (171)
| ||||+++.+| ++|++|+.++.
T Consensus 74 ~-----------LaCq~~~~~d---~~i~~~~~~~~ 95 (98)
T 1iue_A 74 I-----------LLCTCYPKSD---CVIETHKEDEL 95 (98)
T ss_dssp E-----------EGGGCEESSC---EEEECCCHHHH
T ss_pred E-----------EEeECEECCC---eEEEeCChHhh
Confidence 9 9999999985 99999876543
No 20
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=99.75 E-value=9.3e-19 Score=126.18 Aligned_cols=93 Identities=17% Similarity=0.209 Sum_probs=74.1
Q ss_pred eEEEEEcCCC-CEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEecCCccCCCCCChHHHhhcccCCCCCCC
Q psy1435 45 VNITFIDKDG-KRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN 123 (171)
Q Consensus 45 v~Vtfv~~~G-~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~~~~~g 123 (171)
++|+|..+++ ..++|++.+|+|||++|+++|+++++.|+ .|.||+|+|+|.+|..+ ..|...|+.. +.++|
T Consensus 3 ~~V~~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~------~~e~~~L~~~-e~~~g 74 (98)
T 1frd_A 3 YQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCH-SGSCSSCVGKVVEGEVD------QSDQIFLDDE-QMGKG 74 (98)
T ss_dssp EEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSS-SSSSSTTEEEEEESCEE------CTTCCSCCHH-HHHTT
T ss_pred eEEEEEeCCCCCCEEEEeCCCCcHHHHHHHcCCCcccCCC-CCCCCCCEEEEEeCCcc------ccccccCCHH-HhhCC
Confidence 6788886554 24679999999999999999999999998 69999999999988533 2334455532 34578
Q ss_pred eeeccccccCCCceeeeEEEecCCCceEEEeCCCcc
Q psy1435 124 SRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKATR 159 (171)
Q Consensus 124 ~R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~~~~ 159 (171)
+| ||||+++.+| ++|+++....
T Consensus 75 ~~-----------LaC~~~~~~d---~~v~~~~~~~ 96 (98)
T 1frd_A 75 FA-----------LLCVTYPRSN---CTIKTHQEPY 96 (98)
T ss_dssp EE-----------EGGGCEESSS---EEEECCCGGG
T ss_pred cE-----------EEeECEECCC---EEEEecchhh
Confidence 89 9999999985 9999987543
No 21
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.70 E-value=8.5e-18 Score=142.70 Aligned_cols=96 Identities=20% Similarity=0.246 Sum_probs=80.5
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEecCCccCCCCCChHHHhhcccCCCCCCC
Q psy1435 44 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDN 123 (171)
Q Consensus 44 mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~~~~~g 123 (171)
|++|+|.+.+|..+++++.+|+|||++|+++|+++++.|+ .|.||+|+|+|.+|+.+.. +.+.|...|+. .+.++|
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~g~tll~a~~~~gi~i~~~C~-~g~Cg~C~v~v~~G~~~~~--~~~~~~~~l~~-~~~~~g 78 (338)
T 1krh_A 3 NHQVALQFEDGVTRFICIAQGETLSDAAYRQQINIPMDCR-EGECGTCRAFCESGNYDMP--EDNYIEDALTP-EEAQQG 78 (338)
T ss_dssp CEEEEEECTTSCEEEEEECTTCCHHHHHHHTTCCCSCSCS-SSSSCTTEEEEEECCEECC--GGGSCTTTCCH-HHHHHT
T ss_pred ceEEEEEEcCCCcEEEEeCCCCcHHHHHHHcCCCcccCCC-CcCCCCCEEEEecCcEecc--cCccccccCCH-HHHhCC
Confidence 6899998777888889999999999999999999999998 6999999999999964321 14456666664 245678
Q ss_pred eeeccccccCCCceeeeEEEecCCCceEEEeCCC
Q psy1435 124 SRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKA 157 (171)
Q Consensus 124 ~R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~~ 157 (171)
+| ||||+++.+| ++|++|..
T Consensus 79 ~~-----------LaCq~~~~~~---~~v~~~~~ 98 (338)
T 1krh_A 79 YV-----------LACQCRPTSD---AVFQIQAS 98 (338)
T ss_dssp EE-----------ETTTCEESSS---EEEEESSC
T ss_pred eE-----------EEEeCEECCC---eEEEEecc
Confidence 89 9999999985 99999875
No 22
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Probab=99.68 E-value=1.5e-18 Score=132.43 Aligned_cols=105 Identities=16% Similarity=0.259 Sum_probs=79.5
Q ss_pred ccccccCCC--CCCCceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEecCCccCCCCCCh
Q psy1435 31 GEYEWQDPK--SEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEE 108 (171)
Q Consensus 31 ~~~~~~~p~--~~~~mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~ 108 (171)
|.+.|.... .+++|.+|+| ..+|+ .++++.+|+|||++|+++|+++++.|+ .|.||+|+|+|.+|..+.
T Consensus 12 ~~~~~~~~~~~~f~~m~~i~i-~~~g~-~~v~v~~g~tlL~aa~~~Gi~i~~~C~-~G~CgtC~v~v~~G~v~~------ 82 (128)
T 1doi_A 12 DDNGWDMYDDDVFGEASDMDL-DDEDY-GSLEVNEGEYILEAAEAQGYDWPFSCR-AGACANCAAIVLEGDIDM------ 82 (128)
T ss_dssp HHHTCCTTTSCHHHHHHHSCC-CTTTE-EEEECCTTSCHHHHHHHTTCCCCCSSS-SSSSSTTEEEEEESCEEE------
T ss_pred cccccccccccccccccEEEE-EeCCc-EEEEECCCCcHHHHHHHcCCCCccCCC-ccCCCCCEeEEecCCcCc------
Confidence 555665443 5566888887 47774 269999999999999999999999995 699999999999996432
Q ss_pred HHHhhcccCCCCCCCeeeccccccCCCceeeeEEEecCCCceEEEeCCC
Q psy1435 109 KEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKA 157 (171)
Q Consensus 109 ~E~~~L~~~~~~~~g~R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~~ 157 (171)
.|...|+.....++|+| ||||+++.+| .++|++...
T Consensus 83 ~e~~~L~~~e~~~~g~r-----------LaCq~~~~~d--~i~i~~~~~ 118 (128)
T 1doi_A 83 DMQQILSDEEVEDKNVR-----------LTCIGSPDAD--EVKIVYNAK 118 (128)
T ss_dssp CCCSSSCHHHHHTSCEE-----------EGGGEEECSS--EEEEEECGG
T ss_pred hhhccCCHhHhccCCEE-----------EEEEeEEcCC--eEEEEecCC
Confidence 23344443212468899 9999999986 688887544
No 23
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=99.63 E-value=1.1e-16 Score=149.26 Aligned_cols=93 Identities=18% Similarity=0.252 Sum_probs=77.3
Q ss_pred CceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEecCCccCCCCCChHHHhhcccCCCCCC
Q psy1435 43 EIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKD 122 (171)
Q Consensus 43 ~mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~~~~~~ 122 (171)
.|++|+|. ++|+ ++++.+|+|||++|+++|+++++.|+|.|.||+|+|+|.+|+.+ ..|...|+. .+.++
T Consensus 2 ~m~~V~~~-~sg~--~v~v~~G~tLLeAa~~aGi~ip~~C~G~G~CGtC~v~V~~G~v~------~~e~~~Ls~-~e~~~ 71 (631)
T 3zyy_X 2 AEYKVLFK-PDQK--EVAISENTNLMEALNLAGINIKTVCGGAGTCGKCLVRVVDGQKR------VESYGKLKQ-EEIAQ 71 (631)
T ss_dssp -CEEEEEE-TTTE--EEEECTTSCHHHHHHHHTCCCCCSCCCSSCCSTTEEEEEESCEE------ESCCTTCCH-HHHHT
T ss_pred CceEEEEe-cCCe--EEEECCCCcHHHHHHHcCCCCCcCCCCCCcCCCCEEEEeeCccc------ccccccCCH-HHhcC
Confidence 37899987 7775 49999999999999999999999999999999999999999743 223345553 24567
Q ss_pred CeeeccccccCCCceeeeEEEecCCCceEEEeCCCcc
Q psy1435 123 NSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKATR 159 (171)
Q Consensus 123 g~R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp~~~~ 159 (171)
|+| |+||+++.+| ++|++|+.++
T Consensus 72 G~r-----------LaCqa~~~sD---l~Ielp~~~~ 94 (631)
T 3zyy_X 72 GYV-----------LACQTYPESD---LIIEIPFDSR 94 (631)
T ss_dssp TEE-----------ETTTEEECSS---EEEECCTTSS
T ss_pred CcE-----------EeeeCEECCC---EEEEecchhh
Confidence 899 9999999985 9999998765
No 24
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.52 E-value=4e-14 Score=119.96 Aligned_cols=105 Identities=12% Similarity=0.193 Sum_probs=77.7
Q ss_pred ceeEEeeeeeccccccccCCCCCCCceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEecC
Q psy1435 19 VHRIHTSVCTRHGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHE 98 (171)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~p~~~~~mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~g 98 (171)
..|||+|.-.-.. .+...+..++|+|. .+|++ +++.+|+|||++|+++|+++++.|+ .|.||+|+++|.+|
T Consensus 217 ~~~i~~E~F~~~~-----~~~~~~~~~~v~~~-~~~~~--~~~~~~~~ll~a~~~~g~~~~~~C~-~G~Cg~C~~~v~~G 287 (321)
T 2pia_A 217 SGTVHFESFGATN-----TNARENTPFTVRLS-RSGTS--FEIPANRSILEVLRDANVRVPSSCE-SGTCGSCKTALCSG 287 (321)
T ss_dssp TTCEEEECCCCCC-----CCCSCCCCEEEEET-TTCCE--EEECTTSCHHHHHHHTTCCCCCSCS-SSSSCTTEEEEEES
T ss_pred HhhEEEEecCCCC-----CCCCCCccEEEEEe-CCCeE--EEECCCCcHHHHHHHcCCCCCCCCC-CCCCCCCEEEEecC
Confidence 3678888753211 01112456888874 56755 8889999999999999999999995 69999999999999
Q ss_pred CccCCCCCChHHHhhcccCCCCCCCeeeccccccCCCceeeeEEEecCCCceEEEe
Q psy1435 99 YLDALPPAEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTL 154 (171)
Q Consensus 99 ~~~~L~~~t~~E~~~L~~~~~~~~g~R~~~~~~~~~~RLACQ~~v~~dl~glvV~v 154 (171)
..+. . + ..|+.. +. +|+| |+||+++.+| .++|++
T Consensus 288 ~~~~----~--~-~~l~~~-e~-~g~~-----------L~C~~~~~~d--~~~i~l 321 (321)
T 2pia_A 288 EADH----R--D-MVLRDD-EK-GTQI-----------MVCVSRAKSA--ELVLDL 321 (321)
T ss_dssp CEEC----C--C-SSCCTT-TT-TTEE-----------ETTTCEESSS--EEEECC
T ss_pred cccc----c--c-CCCChH-HH-CCeE-----------EEeEeEECCC--cEEEeC
Confidence 6541 1 1 456643 44 8999 9999999985 587764
No 25
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=98.58 E-value=7.1e-08 Score=91.25 Aligned_cols=86 Identities=15% Similarity=0.218 Sum_probs=59.3
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCC-----CCCccccccEEEEecCCccCCCCCChHHH-hhcccC
Q psy1435 44 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGAC-----EASLACTTCHVYVKHEYLDALPPAEEKED-DLLDLA 117 (171)
Q Consensus 44 mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~C-----gG~G~CgtC~V~V~~g~~~~L~~~t~~E~-~~L~~~ 117 (171)
||+|++ ||+. +++++|+|||+||+++|++|++.| ++.|.|+.|.|.|..+.. +.+- .+++..
T Consensus 1 mv~i~i---dg~~--~~v~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~~~~~-------~~~g~~~~~~~ 68 (783)
T 3i9v_3 1 MVRVKV---NDRI--VEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKK-------GPDGKPLLNEK 68 (783)
T ss_dssp CEEEEC---SSCE--EEECTTCBHHHHHHHTTCCCCCSSCCTTSCCCCCSCCSEEEEECC--------------------
T ss_pred CeEEEE---CCEE--EEeCCCChHHHHHHHhCCCccccCCCCCCCCCcccCCcEEEeccccc-------ccccccccccc
Confidence 566664 7876 888999999999999999999999 456999999999964311 1111 111110
Q ss_pred C----CCCCCeeeccccccCCCceeeeEEEecCCCceEEEeC
Q psy1435 118 P----FLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLP 155 (171)
Q Consensus 118 ~----~~~~g~R~~~~~~~~~~RLACQ~~v~~dl~glvV~vp 155 (171)
. +...+.. +||++.+.+ ||+|+..
T Consensus 69 G~~~~~~~~~~~-----------~aC~t~v~~---gm~v~t~ 96 (783)
T 3i9v_3 69 GEPEIQWQPKLA-----------ASCVTAVAD---GMVVDTL 96 (783)
T ss_dssp ----CCBCSSCE-----------ETTTCBCCS---SEEEESS
T ss_pred cccccccCCCcc-----------cccCCCCCC---CCEEEEC
Confidence 0 0123345 999999987 6999874
No 26
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=98.25 E-value=2.4e-06 Score=67.34 Aligned_cols=50 Identities=16% Similarity=0.271 Sum_probs=42.4
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHHHHHC-CCC-CcCCCCCCccccccEEEEecC
Q psy1435 46 NITFIDKDGKRREIKGKVGDNVLYLAHRY-EIP-MEGACEASLACTTCHVYVKHE 98 (171)
Q Consensus 46 ~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~-gI~-i~~~CgG~G~CgtC~V~V~~g 98 (171)
.|+|. .+|+.+++.+.+|+|||++++++ |+. .+..|+. |.||+|.|.| +|
T Consensus 11 ~i~~~-ing~~~~~~v~~~~tlL~~Lr~~~gl~g~~~~C~~-G~CGaC~V~v-dG 62 (168)
T 1t3q_A 11 RISAT-INGKPRVFYVEPRMHLADALREVVGLTGTKIGCEQ-GVCGSCTILI-DG 62 (168)
T ss_dssp EEEEE-ETTEEEEEEECTTSBHHHHHHHTTCCTTSCCSCSS-SSSCTTEEEE-TT
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHhcCCCCccccCCCC-CCCCCcEEEE-CC
Confidence 44443 48988888999999999999997 997 8899974 9999999999 44
No 27
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=98.22 E-value=1.5e-06 Score=79.72 Aligned_cols=68 Identities=18% Similarity=0.379 Sum_probs=55.1
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCC-----C-CccccccEEEEecCCccCCCCCChHHHhhcccC
Q psy1435 44 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACE-----A-SLACTTCHVYVKHEYLDALPPAEEKEDDLLDLA 117 (171)
Q Consensus 44 mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~Cg-----G-~G~CgtC~V~V~~g~~~~L~~~t~~E~~~L~~~ 117 (171)
|+++++ +|+. +++++|+|||++|+++|+.+++.|. + .|.||.|.|.|. |.
T Consensus 1 mv~~~i---ng~~--v~v~~g~tiL~a~~~~gi~ip~lC~~~~~~~~~G~Cg~C~V~v~-g~------------------ 56 (574)
T 3c8y_A 1 MKTIII---NGVQ--FNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEVE-GT------------------ 56 (574)
T ss_dssp CEEEEE---TTEE--EEECCCCBHHHHHHHTTCCCCCSSCBTTBCCSSSCCCTTEEEET-TT------------------
T ss_pred CeEEEE---CCEE--EEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCcccCCCCEEEeC-CC------------------
Confidence 455553 7855 8889999999999999999999987 6 799999999983 21
Q ss_pred CCCCCCeeeccccccCCCceeeeEEEecCCCceEEEe
Q psy1435 118 PFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTL 154 (171)
Q Consensus 118 ~~~~~g~R~~~~~~~~~~RLACQ~~v~~dl~glvV~v 154 (171)
+ .+ +||++.+.+ ||+|..
T Consensus 57 ----~-~~-----------~aC~t~v~~---gm~V~T 74 (574)
T 3c8y_A 57 ----G-LV-----------TACDTLIED---GMIINT 74 (574)
T ss_dssp ----E-EE-----------EGGGCBCCT---TCEEES
T ss_pred ----c-cc-----------ccCCCCccc---ceeEEe
Confidence 1 46 999999885 688874
No 28
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=98.17 E-value=2.7e-06 Score=69.31 Aligned_cols=40 Identities=15% Similarity=0.251 Sum_probs=33.3
Q ss_pred EEEEecCCchHHHHHHHCCC------CCcCCCCCCccccccEEEEecC
Q psy1435 57 REIKGKVGDNVLYLAHRYEI------PMEGACEASLACTTCHVYVKHE 98 (171)
Q Consensus 57 ~~v~~~~G~tLLdaa~~~gI------~i~~~CgG~G~CgtC~V~V~~g 98 (171)
+++++.+|+|||++|+++|+ .....|+ .|.||+|.|.| +|
T Consensus 26 ~~~~~~~~~tll~al~~~~~~~~p~l~~~~~c~-~G~Cg~C~v~v-~G 71 (243)
T 1kf6_B 26 YEVPYDATTSLLDALGYIKDNLAPDLSYRWSCR-MAICGSCGMMV-NN 71 (243)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTCTTCCCCCCCS-SSSSCCCEEEE-TT
T ss_pred EEEecCCCChHHHHHHHcCcccCCCcccccCCC-CCcCCCCEeEE-CC
Confidence 67889999999999999983 2456884 69999999997 44
No 29
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=97.67 E-value=8.3e-05 Score=58.54 Aligned_cols=49 Identities=20% Similarity=0.412 Sum_probs=41.0
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHHHHHC-CC-CCcCCCCCCccccccEEEEe
Q psy1435 46 NITFIDKDGKRREIKGKVGDNVLYLAHRY-EI-PMEGACEASLACTTCHVYVK 96 (171)
Q Consensus 46 ~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~-gI-~i~~~CgG~G~CgtC~V~V~ 96 (171)
.|+|. .+|+.+++++.++++||++++++ |+ .....|+ .|.||.|.|.|.
T Consensus 5 ~i~~~-vNG~~~~v~v~p~~tLLd~LR~~lgltgtk~gC~-~G~CGACtV~vd 55 (160)
T 3hrd_D 5 TINLN-LNGEARSIVTEPNKRLLDLLREDFGLTSVKEGCS-EGECGACTVIFN 55 (160)
T ss_dssp EEEEE-ETTEEEEEEECSSSBHHHHHHTTSCCTTSCCSSS-SSSSCTTEEEET
T ss_pred eEEEE-ECCEEEEEecCCCCCHHHHHHHhcCCCccccccC-CCCCCCCEEEEC
Confidence 45554 58999999999999999999986 76 4678897 599999999994
No 30
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=97.58 E-value=0.00012 Score=57.25 Aligned_cols=47 Identities=19% Similarity=0.310 Sum_probs=39.8
Q ss_pred EEEEcCCCCEEEEEecCCchHHHHHHHC-CC-CCcCCCCCCccccccEEEE
Q psy1435 47 ITFIDKDGKRREIKGKVGDNVLYLAHRY-EI-PMEGACEASLACTTCHVYV 95 (171)
Q Consensus 47 Vtfv~~~G~~~~v~~~~G~tLLdaa~~~-gI-~i~~~CgG~G~CgtC~V~V 95 (171)
|+|. .+|+.+++++.+|+|||+++++. |+ .....|+. |.||.|-|.|
T Consensus 5 i~~~-vNG~~~~v~~~~~~tLL~~Lr~~~gl~g~k~gC~~-G~CGaCtV~v 53 (161)
T 1rm6_C 5 LRLT-LNGRAREDLVPDNMLLLDYLRETVGLTGTKQGCDG-GECGACTVLV 53 (161)
T ss_dssp EEEE-ETTEEEEEEEETTCBHHHHHHHTTCCTTSCCCSSS-SSSCTTEEEE
T ss_pred EEEE-ECCEEEEEecCCcCcHHHHHHHcCCCcccccCCCC-CCCCCCEEEE
Confidence 4443 58999889999999999999987 65 46789984 9999999999
No 31
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=97.53 E-value=0.00019 Score=56.70 Aligned_cols=49 Identities=14% Similarity=0.283 Sum_probs=39.8
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHHHHHC-CC-CCcCCCCCCccccccEEEEe
Q psy1435 46 NITFIDKDGKRREIKGKVGDNVLYLAHRY-EI-PMEGACEASLACTTCHVYVK 96 (171)
Q Consensus 46 ~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~-gI-~i~~~CgG~G~CgtC~V~V~ 96 (171)
.|+|. .+|+.+++++.++++||+++++. |+ .....|+. |.||.|-|.|.
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~~lgl~g~k~gC~~-G~CGaCtV~vd 55 (166)
T 1n62_A 5 HIELT-INGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDT-SHCGACTVDLD 55 (166)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSS-SCSCTTEEEET
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHHcCCCCccccCCCC-CCCCCCEEEEC
Confidence 34443 48999999999999999999985 55 35788974 99999999994
No 32
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=97.53 E-value=0.00019 Score=56.56 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=39.4
Q ss_pred EEEEcCCCCEEEEEecCCchHHHHHHHC-CC-CCcCCCCCCccccccEEEEe
Q psy1435 47 ITFIDKDGKRREIKGKVGDNVLYLAHRY-EI-PMEGACEASLACTTCHVYVK 96 (171)
Q Consensus 47 Vtfv~~~G~~~~v~~~~G~tLLdaa~~~-gI-~i~~~CgG~G~CgtC~V~V~ 96 (171)
|+|. .+|+.+++++.++++||+++++. |+ .....|+. |.||.|.|.|.
T Consensus 6 i~~~-vNG~~~~~~v~~~~tLLd~LR~~lgltg~k~gC~~-G~CGaCtV~vd 55 (163)
T 1ffv_A 6 ITVN-VNGKAQEKAVEPRTLLIHFLREELNLTGAHIGCET-SHCGACTVDID 55 (163)
T ss_dssp EEEE-ETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSS-SCSCTTEEEET
T ss_pred EEEE-ECCEEEEEecCCCCcHHHHHHhcCCCcccccCCCC-CCCCCCEEEEC
Confidence 4443 48999999999999999999984 55 35788985 99999999994
No 33
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=97.28 E-value=0.00031 Score=57.02 Aligned_cols=40 Identities=10% Similarity=0.330 Sum_probs=32.8
Q ss_pred EEEEecCCchHHHHHHHCC------CCCcCCCCCCccccccEEEEecC
Q psy1435 57 REIKGKVGDNVLYLAHRYE------IPMEGACEASLACTTCHVYVKHE 98 (171)
Q Consensus 57 ~~v~~~~G~tLLdaa~~~g------I~i~~~CgG~G~CgtC~V~V~~g 98 (171)
+++++.+|+||||+|+..+ +.....|+ .|.||+|.|.| +|
T Consensus 26 ~~v~~~~~~tlL~~l~~~~~~~~~~l~~~~~c~-~g~Cg~C~v~i-~G 71 (241)
T 2bs2_B 26 YKIEEAPSMTIFIVLNMIRETYDPDLNFDFVCR-AGICGSCGMMI-NG 71 (241)
T ss_dssp EEEECCTTCBHHHHHHHHHHHTCTTCCCCCSSS-SSSSCTTEEEE-TT
T ss_pred EEEeCCCCChHHHHHHHhchhcCCCCccCCCCC-CCCCCCCEeEE-CC
Confidence 5688899999999999764 33456897 59999999999 66
No 34
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=96.94 E-value=0.001 Score=54.61 Aligned_cols=56 Identities=16% Similarity=0.303 Sum_probs=39.2
Q ss_pred CCCceEEEEEc--C--CC-----CEEEEEecC-CchHHHHHHHCCC------CCcCCCCCCccccccEEEEecC
Q psy1435 41 EDEIVNITFID--K--DG-----KRREIKGKV-GDNVLYLAHRYEI------PMEGACEASLACTTCHVYVKHE 98 (171)
Q Consensus 41 ~~~mv~Vtfv~--~--~G-----~~~~v~~~~-G~tLLdaa~~~gI------~i~~~CgG~G~CgtC~V~V~~g 98 (171)
+..++++.+.. + ++ +.++|++.+ |+|||++|++.++ .....|+ .|.||+|.|.| +|
T Consensus 8 ~~~~~~~~i~R~~~~~~~~~~~~~~~~v~~~~~~~tlLd~l~~~~~~~~p~l~~~~~c~-~g~Cg~C~v~i-~G 79 (252)
T 2h88_B 8 TSRIKKFSIYRWDPDKPGDKPRMQTYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCR-EGICGSCAMNI-AG 79 (252)
T ss_dssp CCCEEEEEEEECCTTSTTSCCEEEEEEEEGGGSCSBHHHHHHHHHHHTCTTCCCCCSCS-SSSSCTTEEEE-TT
T ss_pred CCceEEEEEEEeCCCCCCCCceEEEEEEecCCCCChHHHHHHHhCcccCCCccccCCCC-CCCCCCCEEEE-CC
Confidence 34556666653 2 12 336677778 9999999999862 2345786 59999999997 44
No 35
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=96.93 E-value=0.0011 Score=53.62 Aligned_cols=40 Identities=8% Similarity=0.169 Sum_probs=33.4
Q ss_pred EEEEecC--CchHHHHHHHCC-----CCCcCCCCCCccccccEEEEecC
Q psy1435 57 REIKGKV--GDNVLYLAHRYE-----IPMEGACEASLACTTCHVYVKHE 98 (171)
Q Consensus 57 ~~v~~~~--G~tLLdaa~~~g-----I~i~~~CgG~G~CgtC~V~V~~g 98 (171)
+++++.+ |+|||++|+..+ +...+.|+ .|.||.|.|.| +|
T Consensus 23 ~~v~~~~~~~~tll~~l~~~~~~~~~l~~~~~C~-~g~Cg~C~v~v-~G 69 (238)
T 2wdq_B 23 YTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCR-EGVCGSDGLNM-NG 69 (238)
T ss_dssp EEEECCTTCCCBHHHHHHHHHHHCTTCCCCCSSS-SSSSCTTEEEE-TT
T ss_pred EEeecCCCCCChHHHHHHHhcccCCCccccccCC-CCCCCCCEEEE-CC
Confidence 5688888 999999999987 34567897 59999999998 44
No 36
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=96.45 E-value=0.0045 Score=59.78 Aligned_cols=51 Identities=12% Similarity=0.270 Sum_probs=42.3
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHC-CC-CCcCCCCCCccccccEEEEe
Q psy1435 44 IVNITFIDKDGKRREIKGKVGDNVLYLAHRY-EI-PMEGACEASLACTTCHVYVK 96 (171)
Q Consensus 44 mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~-gI-~i~~~CgG~G~CgtC~V~V~ 96 (171)
|.+|+|. .+|+.+++++.++++||+++++. |+ .....|+. |.||.|-|.|.
T Consensus 1 ~~~~~~~-~ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~~-g~CGaCtv~vd 53 (907)
T 1vlb_A 1 MIQKVIT-VNGIEQNLFVDAEALLSDVLRQQLGLTGVKVGCEQ-GQCGACSVILD 53 (907)
T ss_dssp CEEEEEE-ETTEEEEEEECTTSBHHHHHHHTTCCTTSCCSSSS-SSSCTTEEEET
T ss_pred CceEEEE-ECCEEEEEecCCCChHHHHHHHhcCCCeecCCCCC-CCcCccEEEEC
Confidence 4456665 69999999999999999999984 54 56788985 99999999983
No 37
>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A {Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A* 3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*
Probab=96.36 E-value=0.0043 Score=48.97 Aligned_cols=51 Identities=18% Similarity=0.328 Sum_probs=39.8
Q ss_pred CceEEEEEcCCCCEE-EEEecCCchHHHHHHHC-CC-CCcCCCCCCccccccEEEEec
Q psy1435 43 EIVNITFIDKDGKRR-EIKGKVGDNVLYLAHRY-EI-PMEGACEASLACTTCHVYVKH 97 (171)
Q Consensus 43 ~mv~Vtfv~~~G~~~-~v~~~~G~tLLdaa~~~-gI-~i~~~CgG~G~CgtC~V~V~~ 97 (171)
+++.+++ +|+.+ .+.+.++++||++++++ |+ .....|+ .|.||.|-|.|..
T Consensus 3 ~~i~~~v---NG~~~~~~~~~p~~~Ll~~LR~~lgltGtK~GC~-~G~CGACTVlvd~ 56 (164)
T 3nvw_A 3 DELVFFV---NGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCG-EGGCGACTVMLSK 56 (164)
T ss_dssp CCEEEEE---TTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCS-SSSSCTTEEEEEE
T ss_pred ceEEEEE---CCEEEEEecCCCCCCHHHHHHHHcCCCCcCCCcC-CCCCCCCEEEEcc
Confidence 3455554 78774 56789999999999986 65 4678897 5999999999973
No 38
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=96.17 E-value=0.0049 Score=59.49 Aligned_cols=51 Identities=18% Similarity=0.350 Sum_probs=41.8
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHC-CC-CCcCCCCCCccccccEEEEe
Q psy1435 44 IVNITFIDKDGKRREIKGKVGDNVLYLAHRY-EI-PMEGACEASLACTTCHVYVK 96 (171)
Q Consensus 44 mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~-gI-~i~~~CgG~G~CgtC~V~V~ 96 (171)
|.+|+|. .+|+.+++++.++++||+++++. |+ .....|+. |.||.|-|.|.
T Consensus 1 ~~~~~~~-~ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~~-G~CGaCtv~vd 53 (907)
T 1dgj_A 1 METKTLI-VNGMARRLLVSPNDLLVDVLRSQLQLTSVKVGCGK-GQCGACTVILD 53 (907)
T ss_dssp CEEEECE-ETTBCCEEEECTTCBHHHHHHHTTCCTTSCCSSSS-SSSCTTEEEET
T ss_pred CceEEEE-ECCEEEEEecCCCCcHHHHHHHhcCCCccCCCCCC-CCcCceEEEEC
Confidence 3456665 68999999999999999999985 54 46788985 99999999993
No 39
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=96.05 E-value=0.0075 Score=54.18 Aligned_cols=49 Identities=18% Similarity=0.445 Sum_probs=40.1
Q ss_pred EEEEcCCCCEEEE-EecCCchHHHHHHHCCC-CCcCCCCCCccccccEEEEec
Q psy1435 47 ITFIDKDGKRREI-KGKVGDNVLYLAHRYEI-PMEGACEASLACTTCHVYVKH 97 (171)
Q Consensus 47 Vtfv~~~G~~~~v-~~~~G~tLLdaa~~~gI-~i~~~CgG~G~CgtC~V~V~~ 97 (171)
|+|. -+|+.+++ .+.++++||+++++.|+ .....|+. |.||.|-|.|..
T Consensus 3 ~~~~-vNg~~~~~~~~~~~~~Ll~~Lr~~~l~g~k~gC~~-G~CGaCtV~v~~ 53 (462)
T 2w3s_A 3 IAFL-LNGETRRVRIEDPTQSLLEWLRAEGLTGTKEGCNE-GDCGACTVMIRD 53 (462)
T ss_dssp EEEE-ETTEEEEEECSCTTCBHHHHHHHTTCTTSCCSCSS-SSSCTTEEEEEE
T ss_pred EEEE-ECCEEEEEecCCCCCcHHHHHHHcCCCccCCCCCC-CCcCCcEEEEEe
Confidence 4443 58999888 78899999999996676 36788985 999999999953
No 40
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=95.99 E-value=0.017 Score=48.82 Aligned_cols=40 Identities=15% Similarity=0.325 Sum_probs=31.7
Q ss_pred EEEEEecC-CchHHHHHHHCCCC------CcCCCCCCccccccEEEEe
Q psy1435 56 RREIKGKV-GDNVLYLAHRYEIP------MEGACEASLACTTCHVYVK 96 (171)
Q Consensus 56 ~~~v~~~~-G~tLLdaa~~~gI~------i~~~CgG~G~CgtC~V~V~ 96 (171)
.++|++.+ |+|||+++++.+.. ....|+. |.||.|.|.|.
T Consensus 56 ~~~v~v~~~~~tlLdaL~~i~~~~~ptl~~~~~C~~-G~CGsC~V~In 102 (282)
T 3vr8_B 56 KFDVDLDKCGTMVLDALIKIKNEVDPTLTFRRSCRE-GICGSCAMNIA 102 (282)
T ss_pred EEEEEeCCCCCcHHHHHHhcCcccCCceeecCCCCC-CCCCCCEEEEC
Confidence 46788888 99999999986643 2357875 99999999884
No 41
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=94.67 E-value=0.034 Score=49.07 Aligned_cols=48 Identities=21% Similarity=0.180 Sum_probs=33.1
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCC---CCCcc--ccccEEEEe
Q psy1435 44 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGAC---EASLA--CTTCHVYVK 96 (171)
Q Consensus 44 mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~C---gG~G~--CgtC~V~V~ 96 (171)
+++++| ||+. +++.+|+||++|++++|+++-..| .-.|. |+.|.|.|.
T Consensus 15 ~v~~~~---dg~~--~~~~~g~ti~~a~~~~g~~~~~~~~~~~p~g~~~~~~c~v~v~ 67 (493)
T 1y56_A 15 KVTIYF---EGKE--LEAYEGEKLPVALLANEIYWLTTSNEGRKRGAFTFGPVPMTVN 67 (493)
T ss_dssp EEEEEE---TTEE--EEEETTCBHHHHHHHTTCCCCEECTTSCEECSSSSSCCEEBSS
T ss_pred eEEEEE---CCEE--EEecCCCHHHHHHHHCCCceecCCCCCCCCccccceEEEEEEC
Confidence 455554 8866 888999999999999999652111 11122 677888774
No 42
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=92.81 E-value=0.13 Score=49.52 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=37.4
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcC-----------CCCCCccccccEEEEe
Q psy1435 45 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEG-----------ACEASLACTTCHVYVK 96 (171)
Q Consensus 45 v~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~-----------~CgG~G~CgtC~V~V~ 96 (171)
-.|+|. .||+. +++.+|+||.+|++.+|+.+.. .|++ +.|..|.|.|.
T Consensus 21 ~~~~~~-~dG~~--~~~~~g~tv~~aL~~~Gv~~~~~s~~~~~prg~~~~~-~~c~~~~v~v~ 79 (965)
T 2gag_A 21 EALSLT-VDGAK--LSAFRGDTVASALLANGVRRAGNSLYLDRPRGIFAAG-VEEPNALVTVS 79 (965)
T ss_dssp EEEEEE-ETTEE--EEEEETCBHHHHHHHTTCCBCSCCTTTCCCCBCCCSS-TTCCSCEEEEC
T ss_pred CeEEEE-ECCEE--EEecCCCHHHHHHHHcCCeEeecCCCCCCCcccccCC-ccCCceEEEEc
Confidence 345544 48866 8889999999999999987543 3544 78999999997
No 43
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=90.17 E-value=0.29 Score=49.23 Aligned_cols=48 Identities=19% Similarity=0.376 Sum_probs=38.1
Q ss_pred EEEEcCCCCEEEE-EecCCchHHHHHHHC-CC-CCcCCCCCCccccccEEEEe
Q psy1435 47 ITFIDKDGKRREI-KGKVGDNVLYLAHRY-EI-PMEGACEASLACTTCHVYVK 96 (171)
Q Consensus 47 Vtfv~~~G~~~~v-~~~~G~tLLdaa~~~-gI-~i~~~CgG~G~CgtC~V~V~ 96 (171)
|+|. -+|+.+++ .+.+.++||+.++++ |+ .....|+ .|.||.|-|.|.
T Consensus 6 i~~~-vNg~~~~~~~~~p~~~ll~~LR~~~~ltgtk~gC~-~g~CGaCtV~~~ 56 (1332)
T 3unc_A 6 LVFF-VNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCG-EGGCGACTVMLS 56 (1332)
T ss_dssp EEEE-ETTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCS-SSSSCTTEEEEE
T ss_pred EEEE-ECCEEEEeecCCCCCCHHHHHhhhcCCCCcCCCcC-CCCCCCcEEEEe
Confidence 4443 48988765 588999999999985 65 3668897 499999999995
No 44
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=84.99 E-value=0.87 Score=45.71 Aligned_cols=49 Identities=18% Similarity=0.455 Sum_probs=38.0
Q ss_pred EEEEcCCCCEEEEE-ecCCchHHHHHHHC-CC-CCcCCCCCCccccccEEEEec
Q psy1435 47 ITFIDKDGKRREIK-GKVGDNVLYLAHRY-EI-PMEGACEASLACTTCHVYVKH 97 (171)
Q Consensus 47 Vtfv~~~G~~~~v~-~~~G~tLLdaa~~~-gI-~i~~~CgG~G~CgtC~V~V~~ 97 (171)
|+|. -+|+.+++. +.+..|||+-++++ ++ .....|+. |.||.|-|.|..
T Consensus 10 l~F~-vNG~~v~~~~~~p~~tLl~~LR~~~~ltGTK~gC~E-G~CGACtV~v~~ 61 (1335)
T 3zyv_A 10 LIFF-VNGKKVTERNADPEVNLLFYLRKVIRLTGTKYGCGG-GDCGACTVMISR 61 (1335)
T ss_dssp EEEE-ETTEEEEESSCCTTCBHHHHHHHTTCCTTSCCSCSS-SSSCTTEEEEEE
T ss_pred EEEE-ECCEEEEeCCCCcCccHHHHHhccCCCcccccccCC-CCCcceEEEEee
Confidence 5555 589876553 66889999999985 55 35678985 999999999964
No 45
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=83.71 E-value=1.7 Score=31.48 Aligned_cols=33 Identities=12% Similarity=0.112 Sum_probs=27.3
Q ss_pred CCceEEEEEcCCCCE--EEEEecCCchHHHHHHHCC
Q psy1435 42 DEIVNITFIDKDGKR--REIKGKVGDNVLYLAHRYE 75 (171)
Q Consensus 42 ~~mv~Vtfv~~~G~~--~~v~~~~G~tLLdaa~~~g 75 (171)
.|.+.|+|++.+|.. ..|. ..|++|++++.++.
T Consensus 6 ~k~i~i~v~~~~~~~~~~~v~-t~g~tL~dvLk~~~ 40 (101)
T 3u7z_A 6 EKHITVTVIHGDQTENVFEFD-TDAKYLGEVLESEN 40 (101)
T ss_dssp CEEEEEEEECTTSCEEEEEEE-ECCSBHHHHHHHTT
T ss_pred eeEEEEEEEcCCCceeEEEEc-CCccHHHHHHHHcC
Confidence 456899999888876 4466 78999999999998
No 46
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=82.87 E-value=0.79 Score=32.69 Aligned_cols=39 Identities=15% Similarity=0.325 Sum_probs=26.9
Q ss_pred CCCCCCceEEEEEcCCCCEEEEEecCCchHHHHH----HHCCCC
Q psy1435 38 PKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLA----HRYEIP 77 (171)
Q Consensus 38 p~~~~~mv~Vtfv~~~G~~~~v~~~~G~tLLdaa----~~~gI~ 77 (171)
|-....| .|+++.++|++.+|.+.++.+|.|++ +..|++
T Consensus 4 ~~~~~~m-~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~ 46 (90)
T 2al3_A 4 PAGGGGS-AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFN 46 (90)
T ss_dssp ------C-CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCC
T ss_pred cccCCcc-EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 3344455 78888899999999999999988764 456664
No 47
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=80.67 E-value=2.3 Score=30.58 Aligned_cols=53 Identities=23% Similarity=0.318 Sum_probs=34.0
Q ss_pred CCCCCCCc-eEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEec
Q psy1435 37 DPKSEDEI-VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKH 97 (171)
Q Consensus 37 ~p~~~~~m-v~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~ 97 (171)
-|+++... +.+.+ |++++-.|++.+|.||.||+..+ +..- | -.+-.|.|+...
T Consensus 11 ~~~~~~~~~irvhL--PNqQrT~V~VrpG~tlrdAL~Ka-Lk~R----~-L~pe~C~Vy~~~ 64 (95)
T 2l05_A 11 MPKSPQKPIVRVFL--PNKQRTVVPARCGVTVRDSLKKA-LMMR----G-LIPECCAVYRIQ 64 (95)
T ss_dssp CCCCCCSCEEEEEE--TTTEEEEEECCTTCBHHHHHHHH-HHHH----T-CCGGGEEEEEEE
T ss_pred CCCCCCccEEEEEC--CCCCeEEEEecCCcCHHHHHHHH-HHHc----C-CCHHHcEEEEcC
Confidence 36665544 44443 99988899999999998886543 1110 1 255677788653
No 48
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=73.48 E-value=8.1 Score=25.31 Aligned_cols=42 Identities=21% Similarity=0.166 Sum_probs=32.2
Q ss_pred CCCCCCCceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCC
Q psy1435 37 DPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPM 78 (171)
Q Consensus 37 ~p~~~~~mv~Vtfv~~~G~~~~v~~~~G~tLLda----a~~~gI~i 78 (171)
++...+..+.|+|...+|+...+++.+.+|+.+. +...|++.
T Consensus 5 ~~~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 50 (88)
T 3dbh_I 5 ASVGSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPP 50 (88)
T ss_dssp CCSSCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred CCCCCCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCH
Confidence 5566677789999888999999999999988754 33556654
No 49
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=72.65 E-value=4.2 Score=29.10 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=32.0
Q ss_pred CCCCceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCCc
Q psy1435 40 SEDEIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPME 79 (171)
Q Consensus 40 ~~~~mv~Vtfv~~~G~~~~v~~~~G~tLLda----a~~~gI~i~ 79 (171)
...+|+.|+|.+..|+++++++.+.+|+.++ +...|++..
T Consensus 24 ~~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~ 67 (100)
T 1uh6_A 24 GAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWN 67 (100)
T ss_dssp SCCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGG
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHH
Confidence 4567899999998899999999999998754 456677643
No 50
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=72.54 E-value=4.9 Score=28.57 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=29.7
Q ss_pred CCCCceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCC
Q psy1435 40 SEDEIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPM 78 (171)
Q Consensus 40 ~~~~mv~Vtfv~~~G~~~~v~~~~G~tLLda----a~~~gI~i 78 (171)
....|+.|.+.+..|++..+.+.+.+|+.+. +.+.|++.
T Consensus 17 ~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~ 59 (93)
T 3plu_A 17 RGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQP 59 (93)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCG
T ss_pred CCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCH
Confidence 4567899999999999999999999999864 34556554
No 51
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=71.25 E-value=3.7 Score=29.03 Aligned_cols=48 Identities=19% Similarity=0.273 Sum_probs=31.3
Q ss_pred CCceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEec
Q psy1435 42 DEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKH 97 (171)
Q Consensus 42 ~~mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~ 97 (171)
.+++.+.+ |++++-.|++.+|+||.+|+..+ +..-. -.+-.|.|+...
T Consensus 7 ~~~irvhL--Pn~QrT~V~VrpG~tlrdaL~Ka-Lk~R~-----L~pe~C~Vy~~~ 54 (86)
T 1wxm_A 7 GGTVKVYL--PNKQRTVVTVRDGMSVYDSLDKA-LKVRG-----LNQDCCVVYRLI 54 (86)
T ss_dssp SSEEEEEC--SSSCEEEEECCSSCBSHHHHHHH-HHTTT-----CCSSSEEEEEES
T ss_pred cceEEEEC--CCCCeEEEEecCCcCHHHHHHHH-HHHcC-----CCHHHeEEEEcC
Confidence 34556654 99998899999999988876543 11111 235567788653
No 52
>3kdv_A DDRB, DNA damage response B protein; anti-parallel beta-barrel, pentamer, DNA binding protein; HET: DNA; 2.80A {Deinococcus geothermalis} PDB: 4exw_A
Probab=69.15 E-value=4.2 Score=32.03 Aligned_cols=34 Identities=21% Similarity=0.407 Sum_probs=31.1
Q ss_pred CceEEEEEcCCCCEEEEEecCCchHHHHHHHCCC
Q psy1435 43 EIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEI 76 (171)
Q Consensus 43 ~mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI 76 (171)
-|.+|.|+++-|.+.+++++.++.||++++..|-
T Consensus 6 tml~i~f~t~LG~~V~vdve~~~~~l~v~R~yG~ 39 (184)
T 3kdv_A 6 TMLHIEFITDLGAKVTVDVESADKLLDVQRQYGR 39 (184)
T ss_dssp CCEEEEEECTTCCEEEEEESSGGGHHHHHHHHHT
T ss_pred ceEEEEEecCCCceEEEecCCHHHHHHHHHHhhh
Confidence 4899999999999999999999999999998774
No 53
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=67.60 E-value=3.5 Score=30.24 Aligned_cols=46 Identities=13% Similarity=0.202 Sum_probs=30.1
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEec
Q psy1435 44 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKH 97 (171)
Q Consensus 44 mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~ 97 (171)
++.+. -|++++-.|++.+|.||.||+..+ +..-. -.+-.|.|+...
T Consensus 20 ~ir~h--LPNqQrT~V~VrpG~tlrdaL~Ka-Lk~R~-----L~pe~C~Vy~~~ 65 (107)
T 1rrb_A 20 TIRVF--LPNKQRTVVNVRNGMSLHDCLMKA-LKVRG-----LQPECCAVFRLL 65 (107)
T ss_dssp EEEEE--CTTTCCEEEECCTTCBHHHHHHHH-HHHHT-----CCTTTEEEEECC
T ss_pred eEEEE--CCCCCeEEEEecCCcCHHHHHHHH-HHHcC-----CCHHHceeEEcc
Confidence 45554 489988889999999998876543 11111 134577888663
No 54
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=67.23 E-value=5.6 Score=28.61 Aligned_cols=49 Identities=20% Similarity=0.284 Sum_probs=33.1
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEec
Q psy1435 41 EDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKH 97 (171)
Q Consensus 41 ~~~mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~~ 97 (171)
.++.+.+.+ |++++-.|++.+|.||.+|+..+= .. .| -.+-.|.|+...
T Consensus 12 ~~~~irvhL--PNqQrT~V~VrpG~tlrdaL~KaL-k~----R~-L~pe~C~Vy~~~ 60 (96)
T 3ny5_A 12 QKPIVRVFL--PNKQRTVVPARCGVTVRDSLKKAL-MM----RG-LIPECCAVYRIQ 60 (96)
T ss_dssp SSCEEEEEE--TTTEEEEEECCTTCBHHHHHHHHH-HT----TT-CCGGGEEEEECC
T ss_pred hhCEEEEEC--CCCceEEEEecCCcCHHHHHHHHH-HH----cC-CChHHeEEEEcc
Confidence 455566655 999888999999999988765431 11 11 255678888764
No 55
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=66.45 E-value=5.8 Score=27.44 Aligned_cols=44 Identities=11% Similarity=0.229 Sum_probs=29.6
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCcCCCCCCccccccEEEEe
Q psy1435 45 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVK 96 (171)
Q Consensus 45 v~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~~~CgG~G~CgtC~V~V~ 96 (171)
+.+.+ |++++-.|++.+|.||.+|+..+ +..- + -.+-.|.|+..
T Consensus 4 irvhL--Pn~QrT~V~VrpG~tlrdaL~Ka-Lk~R----~-L~pe~C~V~~~ 47 (77)
T 1c1y_B 4 IRVFL--PNKQRTVVNVRNGMSLHDCLMKA-LKVR----G-LQPECCAVFRL 47 (77)
T ss_dssp EEEEE--TTTEEEEEECCTTCBHHHHHHHH-HHTT----T-CCGGGEEEEEE
T ss_pred EEEEC--CCCceEEEEecCCcCHHHHHHHH-HHHc----C-CCHHHeEEEEe
Confidence 44544 89988889999999998886543 1111 1 25567778865
No 56
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=59.58 E-value=12 Score=25.45 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=24.1
Q ss_pred EEEEcCCCCEEEEEecCCchHHHHHHHCCCCCc
Q psy1435 47 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIPME 79 (171)
Q Consensus 47 Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~ 79 (171)
|.+..|+|+. ++.+.|.|.+|+|.+-+-.+.
T Consensus 8 i~v~tP~G~~--~~lp~GaT~~D~A~~Ih~~lg 38 (78)
T 3hvz_A 8 VFVFTPKGDV--ISLPIGSTVIDFAYAIHSAVG 38 (78)
T ss_dssp EEEECTTSCE--EEEETTCBHHHHHHHHCHHHH
T ss_pred EEEECCCCCE--EEecCCCCHHHHHHHhhhhhh
Confidence 5566699987 778999999999987654443
No 57
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=59.46 E-value=18 Score=24.12 Aligned_cols=37 Identities=14% Similarity=0.247 Sum_probs=25.9
Q ss_pred CCceEEEEEcCCCCEEEEEecC-CchHHHHHHHCCCCCcCCC
Q psy1435 42 DEIVNITFIDKDGKRREIKGKV-GDNVLYLAHRYEIPMEGAC 82 (171)
Q Consensus 42 ~~mv~Vtfv~~~G~~~~v~~~~-G~tLLdaa~~~gI~i~~~C 82 (171)
..|++|++ ++|+. .+.+. |.|+++.|...+-.+...|
T Consensus 9 ~~~i~I~l--pdG~~--~~~~~~~~T~~dia~~i~~~l~~~~ 46 (88)
T 1wwt_A 9 SKPIKVTL--PDGKQ--VDAESWKTTPYQIACGISQGLADNT 46 (88)
T ss_dssp CCEEEEEC--TTSCE--EEEETTTCCHHHHHHHSSTTTGGGC
T ss_pred CCCEEEEE--CCCCE--EEcccCCCCHHHHHHHhhhccccce
Confidence 45666665 78887 45566 8999999998765554333
No 58
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=58.71 E-value=19 Score=26.50 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=25.7
Q ss_pred CCCCceEEEEEcCCCCEEEEEecCCchHHHH
Q psy1435 40 SEDEIVNITFIDKDGKRREIKGKVGDNVLYL 70 (171)
Q Consensus 40 ~~~~mv~Vtfv~~~G~~~~v~~~~G~tLLda 70 (171)
....++.|+|....|+++++++.+.+|+.++
T Consensus 13 ~~~~~m~I~vktl~G~~~~lev~~s~TV~~l 43 (125)
T 2gow_A 13 VPADMINLRLILVSGKTKEFLFSPNDSASDI 43 (125)
T ss_dssp CCTTCEEEEEECTTSCEEEEEECTTSBHHHH
T ss_pred CCCCeEEEEEEeCCCCEEEEEeCCccHHHHH
Confidence 3344599999988999999999999998665
No 59
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=54.36 E-value=14 Score=25.11 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=27.4
Q ss_pred CCCCCCCceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCC
Q psy1435 37 DPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPM 78 (171)
Q Consensus 37 ~p~~~~~mv~Vtfv~~~G~~~~v~~~~G~tLLda----a~~~gI~i 78 (171)
.|.-.+..+.|+|...+|+...+++...+|+.+. ....|++.
T Consensus 15 ~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 60 (98)
T 4hcn_B 15 NLYFQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 60 (98)
T ss_dssp -------CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCG
T ss_pred CCCCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCCh
Confidence 4556667788998888999999999999998764 34555553
No 60
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=53.36 E-value=29 Score=23.04 Aligned_cols=39 Identities=13% Similarity=0.128 Sum_probs=29.0
Q ss_pred CCCCceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCC
Q psy1435 40 SEDEIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPM 78 (171)
Q Consensus 40 ~~~~mv~Vtfv~~~G~~~~v~~~~G~tLLda----a~~~gI~i 78 (171)
.....+.|+|...+|+...+++...+|+.+. ....|++.
T Consensus 13 ~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 55 (91)
T 3v6c_B 13 VPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPP 55 (91)
T ss_dssp CCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCCh
Confidence 3344578888888999999999999998764 34556654
No 61
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.20 E-value=34 Score=21.67 Aligned_cols=36 Identities=14% Similarity=0.238 Sum_probs=26.9
Q ss_pred CCceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCC
Q psy1435 42 DEIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIP 77 (171)
Q Consensus 42 ~~mv~Vtfv~~~G~~~~v~~~~G~tLLda----a~~~gI~ 77 (171)
..++.|++...+|+...+++....|+.+. +...|++
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~ 44 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVP 44 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 35577888778899888999999988764 3455655
No 62
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=50.00 E-value=30 Score=24.61 Aligned_cols=29 Identities=17% Similarity=0.137 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCEEEEEecCCchHHHH
Q psy1435 42 DEIVNITFIDKDGKRREIKGKVGDNVLYL 70 (171)
Q Consensus 42 ~~mv~Vtfv~~~G~~~~v~~~~G~tLLda 70 (171)
....+|+|...+|+..++++.+..|+.++
T Consensus 5 ~~~M~I~Vk~l~g~~~~v~V~~~~TV~dL 33 (105)
T 1v2y_A 5 SSGMTVRVCKMDGEVMPVVVVQNATVLDL 33 (105)
T ss_dssp CCSEEEEEECSSSCEEEEEECTTCBHHHH
T ss_pred CCcEEEEEEecCCCEEEEEECCCChHHHH
Confidence 34588999889999999999999998654
No 63
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=46.99 E-value=22 Score=22.53 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=20.5
Q ss_pred EcCCCCEEEEEecCCchHHHHHHHCCCCC
Q psy1435 50 IDKDGKRREIKGKVGDNVLYLAHRYEIPM 78 (171)
Q Consensus 50 v~~~G~~~~v~~~~G~tLLdaa~~~gI~i 78 (171)
..++|+. .+++.|.|+++.|.+.+..+
T Consensus 6 ~~p~g~~--~~~~~g~T~~dla~~i~~~l 32 (73)
T 2kmm_A 6 FTPKGEI--KRLPQGATALDFAYSLHSDL 32 (73)
T ss_dssp ECTTCCE--EEECTTCBHHHHHHHHCSHH
T ss_pred EcCCCCE--EEcCCCCcHHHHHHHHhhcc
Confidence 3378876 67789999999998865443
No 64
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=44.79 E-value=39 Score=24.45 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=25.0
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCchHHHH
Q psy1435 41 EDEIVNITFIDKDGKRREIKGKVGDNVLYL 70 (171)
Q Consensus 41 ~~~mv~Vtfv~~~G~~~~v~~~~G~tLLda 70 (171)
....+.|+|....|+++++++.+.+|+.++
T Consensus 13 ~~~~m~I~vKtl~G~t~~lev~~s~TV~~l 42 (116)
T 1wgh_A 13 PADMINLRLILVSGKTKEFLFSPNDSASDI 42 (116)
T ss_dssp CSSSEEEEEECSSSCEEEEEECTTCBHHHH
T ss_pred CCCeEEEEEEeCCCCEEEEEECCcCHHHHH
Confidence 345588999888999999999999998654
No 65
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=44.67 E-value=36 Score=22.31 Aligned_cols=28 Identities=14% Similarity=0.089 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCEEEEEecCCchHHHH
Q psy1435 43 EIVNITFIDKDGKRREIKGKVGDNVLYL 70 (171)
Q Consensus 43 ~mv~Vtfv~~~G~~~~v~~~~G~tLLda 70 (171)
.++.|+|...+|+...+++...+|+.+.
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~l 31 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEF 31 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHH
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHH
Confidence 4578888888999999999999988765
No 66
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=43.66 E-value=50 Score=21.81 Aligned_cols=33 Identities=9% Similarity=0.136 Sum_probs=25.0
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCCc
Q psy1435 45 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPME 79 (171)
Q Consensus 45 v~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~i~ 79 (171)
++|++. .....++++++|.|+.|.+.+.|++..
T Consensus 3 v~Vkl~--g~~~~~~ev~~g~Tv~dLL~~Lgl~~~ 35 (74)
T 2l32_A 3 VTVEVV--GEETSEVAVDDDGTYADLVRAVDLSPH 35 (74)
T ss_dssp EEEECS--SSSEEEEECSTTCSHHHHHHTTCCCSS
T ss_pred EEEEEe--CccceeEEcCCCCcHHHHHHHcCCCcc
Confidence 445543 224466889999999999999999874
No 67
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=43.17 E-value=37 Score=21.63 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=26.6
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCC
Q psy1435 44 IVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPM 78 (171)
Q Consensus 44 mv~Vtfv~~~G~~~~v~~~~G~tLLda----a~~~gI~i 78 (171)
++.|++...+|+...+++.+.+|+.+. +...+++.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~ 41 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 41 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCh
Confidence 467888888999999999999998764 33455553
No 68
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=42.40 E-value=36 Score=22.46 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=26.2
Q ss_pred CceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCC
Q psy1435 43 EIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIP 77 (171)
Q Consensus 43 ~mv~Vtfv~~~G~~~~v~~~~G~tLLda----a~~~gI~ 77 (171)
.++.|+|...+|+...+++.+.+|+.+. ....|++
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip 41 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ 41 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSC
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCC
Confidence 3577888878899989999999988764 3345554
No 69
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=42.14 E-value=42 Score=21.34 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=26.2
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCC
Q psy1435 44 IVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPM 78 (171)
Q Consensus 44 mv~Vtfv~~~G~~~~v~~~~G~tLLda----a~~~gI~i 78 (171)
...|++...+|+...+++.+.+|+.+. ....|++.
T Consensus 4 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 42 (79)
T 3phx_B 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQD 42 (79)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCG
T ss_pred CEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCH
Confidence 357888888999999999999998754 33456653
No 70
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=42.12 E-value=65 Score=22.88 Aligned_cols=33 Identities=12% Similarity=0.135 Sum_probs=25.9
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHHHHHCCCC
Q psy1435 45 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIP 77 (171)
Q Consensus 45 v~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~gI~ 77 (171)
.-|+|...||..+.|.+.+++|..|+++..-..
T Consensus 10 ~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K 42 (100)
T 1wgr_A 10 HVVKVYSEDGACRSVEVAAGATARHVCEMLVQR 42 (100)
T ss_dssp EEEEEEETTSCEEEEEECTTCCHHHHHHHHHCS
T ss_pred EEEEEEecCCCEEEEEECCCCcHHHHHHHHHHH
Confidence 345555589999999999999999998865443
No 71
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=41.30 E-value=15 Score=25.12 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCEEEEEec--CCchHHHH
Q psy1435 44 IVNITFIDKDGKRREIKGK--VGDNVLYL 70 (171)
Q Consensus 44 mv~Vtfv~~~G~~~~v~~~--~G~tLLda 70 (171)
|+.|+|.+..|++.++++. +.+|+.++
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~l 29 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQI 29 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHHH
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHHH
Confidence 6789999899988777655 88999865
No 72
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=39.40 E-value=16 Score=21.07 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=17.3
Q ss_pred EEecCCchHHHHHHHCCCCC
Q psy1435 59 IKGKVGDNVLYLAHRYEIPM 78 (171)
Q Consensus 59 v~~~~G~tLLdaa~~~gI~i 78 (171)
..+..|+||...|.++|+.+
T Consensus 5 y~V~~GDtl~~Ia~~~~~~~ 24 (48)
T 1e0g_A 5 YRVRKGDSLSSIAKRHGVNI 24 (48)
T ss_dssp EEECTTCCHHHHHHHHTCCH
T ss_pred EEEcCCCcHHHHHHHHCcCH
Confidence 46689999999999998874
No 73
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=39.30 E-value=47 Score=21.45 Aligned_cols=35 Identities=14% Similarity=0.157 Sum_probs=26.6
Q ss_pred CceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCC
Q psy1435 43 EIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIP 77 (171)
Q Consensus 43 ~mv~Vtfv~~~G~~~~v~~~~G~tLLda----a~~~gI~ 77 (171)
.++.|++...+|+...+++....|+.+. ....|++
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~ 44 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLP 44 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCC
T ss_pred CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCC
Confidence 4578888878898889999999998764 3455655
No 74
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=39.29 E-value=33 Score=25.50 Aligned_cols=42 Identities=14% Similarity=0.138 Sum_probs=28.4
Q ss_pred CCCCCCCceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCC
Q psy1435 37 DPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPM 78 (171)
Q Consensus 37 ~p~~~~~mv~Vtfv~~~G~~~~v~~~~G~tLLda----a~~~gI~i 78 (171)
.|.....++.|+|...+|+...+++.+.+|+.+. ....|++.
T Consensus 13 ~~~~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~ 58 (172)
T 3u30_A 13 GLVPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 58 (172)
T ss_dssp ------CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred CCCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCh
Confidence 3445566688888888999999999999999774 44556653
No 75
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=39.04 E-value=46 Score=21.36 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHH
Q psy1435 44 IVNITFIDKDGKRREIKGKVGDNVLYL 70 (171)
Q Consensus 44 mv~Vtfv~~~G~~~~v~~~~G~tLLda 70 (171)
++.|++...+|+...+++....|+.+.
T Consensus 5 ~m~i~vk~~~g~~~~~~v~~~~TV~~l 31 (85)
T 2wyq_A 5 AVTITLKTLQQQTFKIRMEPDETVKVL 31 (85)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHH
T ss_pred eEEEEEEECCCCEEEEEECCCCCHHHH
Confidence 577888878899989999999988764
No 76
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=38.81 E-value=21 Score=24.78 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHH
Q psy1435 44 IVNITFIDKDGKRREIKGKVGDNVLYL 70 (171)
Q Consensus 44 mv~Vtfv~~~G~~~~v~~~~G~tLLda 70 (171)
|+.|+|...+|+...+++...+|+.+.
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~L 27 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILET 27 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHH
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHH
Confidence 567888878899988999999998764
No 77
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=38.42 E-value=47 Score=21.60 Aligned_cols=37 Identities=19% Similarity=0.158 Sum_probs=27.4
Q ss_pred CCceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCC
Q psy1435 42 DEIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPM 78 (171)
Q Consensus 42 ~~mv~Vtfv~~~G~~~~v~~~~G~tLLda----a~~~gI~i 78 (171)
..++.|++...+|+...+++.+.+|+.+. ....|++.
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 55 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPS 55 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCG
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCH
Confidence 34578888888899999999999998764 33445543
No 78
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=38.30 E-value=19 Score=28.44 Aligned_cols=29 Identities=24% Similarity=0.124 Sum_probs=20.3
Q ss_pred hHHHHHHHCCCCCc------CCCCCCccccccEEEEe
Q psy1435 66 NVLYLAHRYEIPME------GACEASLACTTCHVYVK 96 (171)
Q Consensus 66 tLLdaa~~~gI~i~------~~CgG~G~CgtC~V~V~ 96 (171)
.+.+ +.+.|++.. -.|| -|.|+.|.|...
T Consensus 205 ~v~~-l~~~gv~~~vs~e~~m~CG-~G~C~~C~~~~~ 239 (262)
T 1ep3_B 205 AVAK-KYDQLERLYISMESRMACG-IGACYACVEHDK 239 (262)
T ss_dssp HHHH-HTTTCSSEEEECCCCCSSS-SSSSCTTEEEET
T ss_pred HHHH-HHhCCCCEEEEecccccCc-ccccccCCcccc
Confidence 4555 667787632 4576 699999999864
No 79
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=36.95 E-value=41 Score=21.40 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=25.3
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCC
Q psy1435 45 VNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIP 77 (171)
Q Consensus 45 v~Vtfv~~~G~~~~v~~~~G~tLLda----a~~~gI~ 77 (171)
+.|++.+.+|+...+++.+.+|+.++ +...|++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~ 40 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP 40 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCC
Confidence 67888888999999999999887654 3345554
No 80
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=35.72 E-value=43 Score=22.65 Aligned_cols=37 Identities=24% Similarity=0.404 Sum_probs=27.4
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCC
Q psy1435 41 EDEIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIP 77 (171)
Q Consensus 41 ~~~mv~Vtfv~~~G~~~~v~~~~G~tLLda----a~~~gI~ 77 (171)
...++.|++.+.+|+...+++...+|+.++ +...|++
T Consensus 18 ~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip 58 (97)
T 1wyw_B 18 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP 58 (97)
T ss_dssp -CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC
Confidence 344588999889999999999999887654 3345554
No 81
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=34.64 E-value=59 Score=22.21 Aligned_cols=40 Identities=13% Similarity=0.257 Sum_probs=29.6
Q ss_pred CCCCCCCceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCC
Q psy1435 37 DPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIP 77 (171)
Q Consensus 37 ~p~~~~~mv~Vtfv~~~G~~~~v~~~~G~tLLda----a~~~gI~ 77 (171)
.|+..+.++.|+|....|+ ..+++...+|+.+. ....|++
T Consensus 15 ~~~~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip 58 (100)
T 1yqb_A 15 VPRGSPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAH 58 (100)
T ss_dssp CCSCCTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCC
T ss_pred CCCCCCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcC
Confidence 4677778899999887775 68999999988764 3344554
No 82
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=34.55 E-value=60 Score=21.55 Aligned_cols=32 Identities=13% Similarity=0.067 Sum_probs=25.2
Q ss_pred CCceEEEEEcCCCCEEEEEecCCchHHHHHHH
Q psy1435 42 DEIVNITFIDKDGKRREIKGKVGDNVLYLAHR 73 (171)
Q Consensus 42 ~~mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~ 73 (171)
..++.|+|...+|+...+++...+|+.++-..
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~ 36 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSK 36 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHHH
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHH
Confidence 35578888778898888999999999876443
No 83
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=34.26 E-value=82 Score=20.37 Aligned_cols=36 Identities=17% Similarity=0.088 Sum_probs=26.4
Q ss_pred CCceEEEEEcCCC-CEEEE-EecCCchHHHH----HHHCCCC
Q psy1435 42 DEIVNITFIDKDG-KRREI-KGKVGDNVLYL----AHRYEIP 77 (171)
Q Consensus 42 ~~mv~Vtfv~~~G-~~~~v-~~~~G~tLLda----a~~~gI~ 77 (171)
..++.|+|....| +...+ .+.+..|+.+. ....|++
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip 46 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVR 46 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCC
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcC
Confidence 4567888887888 68889 49999998764 3355655
No 84
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=33.52 E-value=83 Score=27.76 Aligned_cols=31 Identities=10% Similarity=0.115 Sum_probs=20.5
Q ss_pred eEEEEEc-CCCCEEEEEecCCchHHHHHHHCC
Q psy1435 45 VNITFID-KDGKRREIKGKVGDNVLYLAHRYE 75 (171)
Q Consensus 45 v~Vtfv~-~~G~~~~v~~~~G~tLLdaa~~~g 75 (171)
|.+++.+ ..-..++|.+++|.+++++++.+.
T Consensus 319 VtytV~~~~~~~~~~Vtv~~gssll~vLk~A~ 350 (414)
T 2bb6_A 319 VLLKVSGISPSYRHSVSVPAGSSLEDILKNAQ 350 (414)
T ss_dssp EEEEEESSSSCEEEEEEEETTCCHHHHHHHHH
T ss_pred EEEEEeeCCCccceEEEecCCCCHHHHHHHHH
Confidence 4444442 223346799999999998877654
No 85
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=32.51 E-value=38 Score=21.64 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=25.7
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCC
Q psy1435 44 IVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPM 78 (171)
Q Consensus 44 mv~Vtfv~~~G~~~~v~~~~G~tLLda----a~~~gI~i 78 (171)
++.|++...+|+...+++.+.+|+.+. +...+++.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~ 41 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPP 41 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCG
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCH
Confidence 467888878899999999999988765 33456554
No 86
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=30.01 E-value=66 Score=19.76 Aligned_cols=32 Identities=28% Similarity=0.262 Sum_probs=23.4
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHH----HHHCCCC
Q psy1435 46 NITFIDKDGKRREIKGKVGDNVLYL----AHRYEIP 77 (171)
Q Consensus 46 ~Vtfv~~~G~~~~v~~~~G~tLLda----a~~~gI~ 77 (171)
.|++...+|+...+++.+.+|+.+. +...|++
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~ 37 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP 37 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcC
Confidence 4677777899888999999988664 3345554
No 87
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=29.94 E-value=74 Score=21.79 Aligned_cols=30 Identities=13% Similarity=0.135 Sum_probs=23.4
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCchHHHH
Q psy1435 41 EDEIVNITFIDKDGKRREIKGKVGDNVLYL 70 (171)
Q Consensus 41 ~~~mv~Vtfv~~~G~~~~v~~~~G~tLLda 70 (171)
...++.|+|....|+...+++....|+.++
T Consensus 20 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~L 49 (106)
T 1ttn_A 20 SGYECQLRLRLSTGKDLKLVVRSTDTVFHM 49 (106)
T ss_dssp -CCSEEEEEEETTTEEEEEEECTTSHHHHH
T ss_pred CCCeEEEEEEcCCCCEEEEEeCCCCcHHHH
Confidence 344578888777898888999999998764
No 88
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=29.31 E-value=82 Score=21.76 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=27.1
Q ss_pred CCceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCC
Q psy1435 42 DEIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIP 77 (171)
Q Consensus 42 ~~mv~Vtfv~~~G~~~~v~~~~G~tLLda----a~~~gI~ 77 (171)
..++.|++...+|+...+++....|+.+. +...|++
T Consensus 33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip 72 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 72 (111)
T ss_dssp SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcC
Confidence 34688888888899989999999988764 3345554
No 89
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=29.21 E-value=98 Score=21.05 Aligned_cols=33 Identities=12% Similarity=0.202 Sum_probs=25.0
Q ss_pred CCCCCCCceEEEEEcCCCCEEEEEecCCchHHHH
Q psy1435 37 DPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYL 70 (171)
Q Consensus 37 ~p~~~~~mv~Vtfv~~~G~~~~v~~~~G~tLLda 70 (171)
++.-.+.++.|+|....|+ ..+++...+|+.+.
T Consensus 10 ~~~~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~L 42 (106)
T 1wx7_A 10 APVQDPHLIKVTVKTPKDK-EDFSVTDTCTIQQL 42 (106)
T ss_dssp SCCCCSSEEEEEEECSSCE-EEEEEETTCCHHHH
T ss_pred CCCCCCceEEEEEEeCCCc-EEEEECCCCcHHHH
Confidence 3444577899998877775 68999999988764
No 90
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=29.08 E-value=79 Score=20.81 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=25.3
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCC
Q psy1435 45 VNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIP 77 (171)
Q Consensus 45 v~Vtfv~~~G~~~~v~~~~G~tLLda----a~~~gI~ 77 (171)
.+|++....|+..++++.+.+|+.++ ....|++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip 47 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIP 47 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcC
Confidence 67888888999999999999998764 3344554
No 91
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=28.97 E-value=88 Score=20.69 Aligned_cols=37 Identities=11% Similarity=0.063 Sum_probs=27.4
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCC
Q psy1435 41 EDEIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPM 78 (171)
Q Consensus 41 ~~~mv~Vtfv~~~G~~~~v~~~~G~tLLda----a~~~gI~i 78 (171)
...++.|+|... |+...+++....|+.+. ....|++.
T Consensus 14 ~~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~ 54 (96)
T 1wx8_A 14 SSRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNA 54 (96)
T ss_dssp CSCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCT
T ss_pred CCCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCH
Confidence 346788988876 88899999999988764 34556553
No 92
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=28.63 E-value=1.2e+02 Score=21.19 Aligned_cols=33 Identities=15% Similarity=0.049 Sum_probs=26.2
Q ss_pred CCCCCCceEEEEEcCCCCEEEEEecCCchHHHH
Q psy1435 38 PKSEDEIVNITFIDKDGKRREIKGKVGDNVLYL 70 (171)
Q Consensus 38 p~~~~~mv~Vtfv~~~G~~~~v~~~~G~tLLda 70 (171)
+........|.|.-++|.+..-++...++|-++
T Consensus 7 ~~~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v 39 (109)
T 2dzk_A 7 GRDRSTIARIQFRLPDGSSFTNQFPSDAPLEEA 39 (109)
T ss_dssp CCCCSCCEEEEEECSSSCEEEEEECTTSBHHHH
T ss_pred CCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHH
Confidence 345556788999889999888888898888665
No 93
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=28.29 E-value=86 Score=21.34 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=25.4
Q ss_pred cccccCCCCCCCceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCC
Q psy1435 32 EYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIP 77 (171)
Q Consensus 32 ~~~~~~p~~~~~mv~Vtfv~~~G~~~~v~~~~G~tLLda----a~~~gI~ 77 (171)
+..|..+. ..++.|+|... |+...+++....|+.+. ....|++
T Consensus 15 ~~~~~~~~--~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip 61 (101)
T 2klc_A 15 ENLYFQGH--PKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSH 61 (101)
T ss_dssp ----------CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCC
T ss_pred cccccCCC--CCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcC
Confidence 44555433 34578888766 88888999999998764 3345655
No 94
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=27.39 E-value=1.2e+02 Score=19.83 Aligned_cols=36 Identities=11% Similarity=0.161 Sum_probs=25.4
Q ss_pred CCCceEEEEEcCCCCEEEEEecCC-----chHHHH----HHHCCCC
Q psy1435 41 EDEIVNITFIDKDGKRREIKGKVG-----DNVLYL----AHRYEIP 77 (171)
Q Consensus 41 ~~~mv~Vtfv~~~G~~~~v~~~~G-----~tLLda----a~~~gI~ 77 (171)
.+.|++|++.. .|+.+.+++... .|+.+. ....|++
T Consensus 4 ~~~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip 48 (92)
T 1wxv_A 4 GSSGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVP 48 (92)
T ss_dssp CCSSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCC
T ss_pred CCCeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcC
Confidence 34678898875 588889999885 777654 3355655
No 95
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=27.25 E-value=77 Score=19.43 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=19.8
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHH
Q psy1435 46 NITFIDKDGKRREIKGKVGDNVLYL 70 (171)
Q Consensus 46 ~Vtfv~~~G~~~~v~~~~G~tLLda 70 (171)
.|++...+|+...+++.+..|+.+.
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~l 26 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENV 26 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHH
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHH
Confidence 4666667899888999999988664
No 96
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=27.09 E-value=94 Score=20.88 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=27.9
Q ss_pred CCCCCCceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCC
Q psy1435 38 PKSEDEIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIP 77 (171)
Q Consensus 38 p~~~~~mv~Vtfv~~~G~~~~v~~~~G~tLLda----a~~~gI~ 77 (171)
+...+.++.|+|. ..|+.+.+++....|+.+. ....||+
T Consensus 11 ~~~~~~~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip 53 (95)
T 1v86_A 11 GGVGKELVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLP 53 (95)
T ss_dssp CCCCCCCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSC
T ss_pred CCCCCceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 3355667888876 5688889999999998764 3355655
No 97
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=27.04 E-value=44 Score=23.51 Aligned_cols=33 Identities=12% Similarity=0.076 Sum_probs=23.2
Q ss_pred eEEEEEcCCC-CEEEEEecCCchHHHHHHHCCCC
Q psy1435 45 VNITFIDKDG-KRREIKGKVGDNVLYLAHRYEIP 77 (171)
Q Consensus 45 v~Vtfv~~~G-~~~~v~~~~G~tLLdaa~~~gI~ 77 (171)
|.|.+-.++. ....+++.+|.|+.+++.+.|+.
T Consensus 15 v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~ 48 (97)
T 2hj1_A 15 IEIAYAFPERYYLKSFQVDEGITVQTAITQSGIL 48 (97)
T ss_dssp EEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHH
T ss_pred EEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCC
Confidence 4444444442 23456789999999999999984
No 98
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=26.82 E-value=43 Score=26.19 Aligned_cols=28 Identities=18% Similarity=0.112 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHCC
Q psy1435 44 IVNITFIDKDGKRREIKGKVGDNVLYLAHRYE 75 (171)
Q Consensus 44 mv~Vtfv~~~G~~~~v~~~~G~tLLdaa~~~g 75 (171)
|++|++ ++|+. .+.+.|.|+++.|.+.+
T Consensus 1 ~i~I~~--p~G~~--~~~~~g~T~~dia~~i~ 28 (224)
T 1tke_A 1 MPVITL--PDGSQ--RHYDHAVSPMDVALDIG 28 (224)
T ss_dssp CCEEEC--TTSCE--EECSSCBCHHHHHHHHC
T ss_pred CeEEEe--CCCCE--EEecCCCCHHHHHHHHh
Confidence 355654 78886 67789999999998753
No 99
>3fcg_A F1 capsule-anchoring protein; beta barrel, beta strand swapping, cell membrane, cell outer membrane, cell projection, fimbrium, membrane; 2.85A {Yersinia pestis}
Probab=25.11 E-value=1.7e+02 Score=20.30 Aligned_cols=47 Identities=13% Similarity=0.189 Sum_probs=33.8
Q ss_pred eecCcceeEEeeeeeccccccccCCC--CCCCceEEEEEcCCCCEEEEEec
Q psy1435 14 VRPNNVHRIHTSVCTRHGEYEWQDPK--SEDEIVNITFIDKDGKRREIKGK 62 (171)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~mv~Vtfv~~~G~~~~v~~~ 62 (171)
|+-|+..-|.|.| --|++..+.-. ....-..|++.+.+|..+++.++
T Consensus 31 v~qnG~~iy~~~V--ppGpF~I~dl~~~~~~Gdl~V~v~eadG~~~~~~vp 79 (90)
T 3fcg_A 31 VLRDGYTVSNELV--PSGPFELANLPLGGGSGELKVIIHESDGTKQVFTVP 79 (90)
T ss_dssp EESSSCEEEEEEE--CSEEEEECCCC---CCEEEEEEEECTTSCEEEEEEE
T ss_pred EEECCEEEEEeEe--CCCCeEEcCCcccCCceeEEEEEEECCCCEEEEEEC
Confidence 4567777777654 56888777544 45667999999999998777653
No 100
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=24.66 E-value=87 Score=20.56 Aligned_cols=33 Identities=27% Similarity=0.230 Sum_probs=24.3
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCC
Q psy1435 46 NITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPM 78 (171)
Q Consensus 46 ~Vtfv~~~G~~~~v~~~~G~tLLda----a~~~gI~i 78 (171)
.|+|...+|+...+++.+.+|+.+. ....|++.
T Consensus 2 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 38 (88)
T 4fbj_B 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPP 38 (88)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCG
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCh
Confidence 4667778899999999999988764 33556654
No 101
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=24.46 E-value=90 Score=21.13 Aligned_cols=38 Identities=5% Similarity=-0.055 Sum_probs=27.8
Q ss_pred CCCCceEEEEEcCCCCEE-EEEecCCchHHHH----HHHCCCCC
Q psy1435 40 SEDEIVNITFIDKDGKRR-EIKGKVGDNVLYL----AHRYEIPM 78 (171)
Q Consensus 40 ~~~~mv~Vtfv~~~G~~~-~v~~~~G~tLLda----a~~~gI~i 78 (171)
+.+.|+.|++. ..|+.+ .+++...+|+.+. ....||+.
T Consensus 3 ~~~~~m~i~Vk-~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~ 45 (96)
T 1wgg_A 3 SGSSGYSVTVK-WGKEKFEGVELNTDEPPMVFKAQLFALTGVQP 45 (96)
T ss_dssp SCCCEEEEEEE-ETTEEEEEEEEESSSCHHHHHHHHHHHTCCCT
T ss_pred CCCcEEEEEEE-ECCEEEEEEEECCCCcHHHHHHHHHHHHCcCH
Confidence 44578888887 468888 5999999998764 44667663
No 102
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.37 E-value=29 Score=22.43 Aligned_cols=21 Identities=33% Similarity=0.445 Sum_probs=18.0
Q ss_pred EEEecCCchHHHHHHHCCCCC
Q psy1435 58 EIKGKVGDNVLYLAHRYEIPM 78 (171)
Q Consensus 58 ~v~~~~G~tLLdaa~~~gI~i 78 (171)
...+.+|+||...|+++++.+
T Consensus 17 ~y~V~~GDTL~~IA~~~~~~~ 37 (77)
T 2djp_A 17 EHQLEPGDTLAGLALKYGVTM 37 (77)
T ss_dssp EECCCTTCCHHHHHHHHTCCH
T ss_pred EEEECCCCcHHHHHHHHCcCH
Confidence 456799999999999998864
No 103
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=23.58 E-value=93 Score=20.39 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=24.5
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCC
Q psy1435 46 NITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPM 78 (171)
Q Consensus 46 ~Vtfv~~~G~~~~v~~~~G~tLLda----a~~~gI~i 78 (171)
.|+|...+|+...+++...+|+.+. ....|++.
T Consensus 3 ~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~ 39 (96)
T 3k9o_B 3 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 39 (96)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCG
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCCh
Confidence 5677778899989999999988764 34556654
No 104
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=23.27 E-value=1.1e+02 Score=21.14 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=27.2
Q ss_pred CceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCC
Q psy1435 43 EIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIPM 78 (171)
Q Consensus 43 ~mv~Vtfv~~~G~~~~v~~~~G~tLLda----a~~~gI~i 78 (171)
.+++|+|...+|+...+.+....|+.+. ....|++.
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~ 73 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 73 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCh
Confidence 3478888888999999999999998754 33455553
No 105
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=23.12 E-value=1.1e+02 Score=20.76 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=26.6
Q ss_pred CceEEEEEcCCCCEEEEEecCCchH---HHH-HHHCCCCC
Q psy1435 43 EIVNITFIDKDGKRREIKGKVGDNV---LYL-AHRYEIPM 78 (171)
Q Consensus 43 ~mv~Vtfv~~~G~~~~v~~~~G~tL---Lda-a~~~gI~i 78 (171)
..++|++.+.+|+...+.+...++| +++ +.+.|++.
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~ 43 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM 43 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCS
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence 3478999989999999999998764 444 44566653
No 106
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=22.77 E-value=1e+02 Score=20.30 Aligned_cols=28 Identities=21% Similarity=0.182 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCC--EEEEEecCCchHHHH
Q psy1435 43 EIVNITFIDKDGK--RREIKGKVGDNVLYL 70 (171)
Q Consensus 43 ~mv~Vtfv~~~G~--~~~v~~~~G~tLLda 70 (171)
.++.|+|...+|+ ..++++...+|+.++
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~l 35 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHL 35 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHH
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHH
Confidence 4578888888787 566677788888764
No 107
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=22.75 E-value=1e+02 Score=18.98 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCC
Q psy1435 45 VNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIP 77 (171)
Q Consensus 45 v~Vtfv~~~G~~~~v~~~~G~tLLda----a~~~gI~ 77 (171)
+.|++.. +|+..++++....|+.+. +...|++
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~ 40 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIP 40 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCC
Confidence 5677776 888888999999998764 3345554
No 108
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=22.25 E-value=1.7e+02 Score=19.02 Aligned_cols=35 Identities=9% Similarity=0.028 Sum_probs=25.4
Q ss_pred CceEEEEEcCCCC-EEEEEecCCchHH---HH-HHHCCCC
Q psy1435 43 EIVNITFIDKDGK-RREIKGKVGDNVL---YL-AHRYEIP 77 (171)
Q Consensus 43 ~mv~Vtfv~~~G~-~~~v~~~~G~tLL---da-a~~~gI~ 77 (171)
..+.|.+.+.+|+ ...+.+...++|- ++ +.+.|++
T Consensus 6 ~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~ 45 (79)
T 3a4r_A 6 QELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLS 45 (79)
T ss_dssp CCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCT
T ss_pred CEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCC
Confidence 4488999999996 7889999988754 33 3455655
No 109
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=22.05 E-value=1.3e+02 Score=19.01 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=24.9
Q ss_pred eEEEEEcCCCCEEEEEecCCch---HHHH-HHHCCCCC
Q psy1435 45 VNITFIDKDGKRREIKGKVGDN---VLYL-AHRYEIPM 78 (171)
Q Consensus 45 v~Vtfv~~~G~~~~v~~~~G~t---LLda-a~~~gI~i 78 (171)
++|.+.+.+|+...+.+...++ |+++ +.+.|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~ 39 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM 39 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCT
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence 5788888899999999999876 4444 34566643
No 110
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=21.63 E-value=40 Score=22.60 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=15.2
Q ss_pred HHHHHHHCCCC-----CcCCCCCCccccccE
Q psy1435 67 VLYLAHRYEIP-----MEGACEASLACTTCH 92 (171)
Q Consensus 67 LLdaa~~~gI~-----i~~~CgG~G~CgtC~ 92 (171)
.|+.+.+.|.- -.+.|.+ |.|++|.
T Consensus 36 dL~~Le~~G~l~R~~~~GgaC~~-g~C~~C~ 65 (78)
T 1xn7_A 36 MLQQLESMGKAVRIQEEPDGCLS-GSCKSCP 65 (78)
T ss_dssp HHHHHHHHTSEEEECCCCCCCCC-SSCCCCC
T ss_pred HHHHHHHCCCEEEecCcCCCCCC-CCCCCCC
Confidence 35566666642 2577864 5688883
No 111
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=21.63 E-value=1.2e+02 Score=20.57 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=25.9
Q ss_pred CceEEEEEcCCCCEEEEEecCCchH---HHH-HHHCCCC
Q psy1435 43 EIVNITFIDKDGKRREIKGKVGDNV---LYL-AHRYEIP 77 (171)
Q Consensus 43 ~mv~Vtfv~~~G~~~~v~~~~G~tL---Lda-a~~~gI~ 77 (171)
..++|.+.+.+|+...+.+...++| +++ +.+.|++
T Consensus 6 ~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~ 44 (94)
T 2io1_B 6 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS 44 (94)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCC
T ss_pred CeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCC
Confidence 4478999889999999999998865 444 3455554
No 112
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=21.35 E-value=59 Score=22.30 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCCEEEEEecCC-chHHHHHHHCCCC
Q psy1435 42 DEIVNITFIDKDGKRREIKGKVG-DNVLYLAHRYEIP 77 (171)
Q Consensus 42 ~~mv~Vtfv~~~G~~~~v~~~~G-~tLLdaa~~~gI~ 77 (171)
..+.+|++ +|+. +++.+| .||.+.+...+++
T Consensus 18 ~~~M~I~v---NGe~--~el~~~~~Tv~dLL~~L~~~ 49 (87)
T 1tyg_B 18 GGRHMLQL---NGKD--VKWKKDTGTIQDLLASYQLE 49 (87)
T ss_dssp ----CEEE---TTEE--ECCSSSCCBHHHHHHHTTCT
T ss_pred CcceEEEE---CCEE--EECCCCCCcHHHHHHHhCCC
Confidence 33456665 6765 666887 9999999998865
No 113
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=20.88 E-value=1.9e+02 Score=20.55 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=25.8
Q ss_pred CCceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCC
Q psy1435 42 DEIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIP 77 (171)
Q Consensus 42 ~~mv~Vtfv~~~G~~~~v~~~~G~tLLda----a~~~gI~ 77 (171)
..+++|+|... |+..++++...+|+.+. ....|++
T Consensus 30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip 68 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQ 68 (125)
T ss_dssp CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSC
T ss_pred CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 35688988876 88889999999988764 3344554
No 114
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=20.30 E-value=1.6e+02 Score=19.62 Aligned_cols=37 Identities=11% Similarity=0.021 Sum_probs=26.1
Q ss_pred CCCCceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCC
Q psy1435 40 SEDEIVNITFIDKDGKRREIKGKVGDNVLYL----AHRYEIP 77 (171)
Q Consensus 40 ~~~~mv~Vtfv~~~G~~~~v~~~~G~tLLda----a~~~gI~ 77 (171)
-++..+.|++....| ..++++.+.+|+.+. ....|++
T Consensus 11 ~~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip 51 (94)
T 2kan_A 11 AAVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTP 51 (94)
T ss_dssp SSSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSC
T ss_pred cCCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 344557888877766 788999999998764 3345554
Done!