RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1435
(171 letters)
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur,
metal-binding, electron transport; 2.01A
{Rhodopseudomonas palustris}
Length = 126
Score = 164 bits (418), Expect = 2e-53
Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 13/133 (9%)
Query: 28 TRHGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASL 86
H P+ I F+D G+ R ++ + G V+ A R IP +E C +
Sbjct: 6 HHHHHSSGLVPRGSHMA-KINFVDHTGETRTVEVEEGATVMEAAIRNAIPGVEAECGGAC 64
Query: 87 ACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKE 146
AC TCHVYV + + + E+D+LD ++ NSRL CQI ++ E
Sbjct: 65 ACATCHVYVDEAWREKVGGPSPMEEDMLDFGYDVRP-----------NSRLSCQIKVSNE 113
Query: 147 LEGIEVTLPKATR 159
L+G+ VT P+ R
Sbjct: 114 LDGLIVTTPERQR 126
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport,
iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Length = 109
Score = 163 bits (416), Expect = 3e-53
Identities = 68/119 (57%), Positives = 89/119 (74%), Gaps = 11/119 (9%)
Query: 41 EDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYL 100
++VN+ F+D+ G+R + G+VGDNVL+LA R+ + +EGACEASLAC+TCHVYV ++L
Sbjct: 2 ASDVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACSTCHVYVSEDHL 61
Query: 101 DALPPAEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKATR 159
D LPP EE+EDD+LD+AP L++ NSRLGCQI+LT ELEG E TLPK TR
Sbjct: 62 DLLPPPEEREDDMLDMAPLLQE-----------NSRLGCQIVLTPELEGAEFTLPKITR 109
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol
SIDE CHA cleavage, structural genomics; HET: HEM HC9;
2.17A {Homo sapiens} PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A
1e6e_B* 1cje_A
Length = 123
Score = 161 bits (410), Expect = 4e-52
Identities = 44/132 (33%), Positives = 72/132 (54%), Gaps = 13/132 (9%)
Query: 40 SEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEG--ACEASLACTTCHVYVKH 97
S ++ + + FI++DG+ KGKVGD++L + + ++G ACE +LAC+TCH+ +
Sbjct: 1 SSEDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFED 60
Query: 98 EYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKA 157
+ L ++E+D+LDLA L D SRLGCQI LTK ++ + V +P+
Sbjct: 61 HIYEKLDAITDEENDMLDLAYGLTD-----------RSRLGCQICLTKSMDNMTVRVPET 109
Query: 158 TRNFYVDGHTPK 169
+ K
Sbjct: 110 VADARQSIDVGK 121
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur,
iron, transport, ferredoxin, adrenodoxin-like, electron
transport; 2.60A {Schizosaccharomyces pombe}
Length = 103
Score = 154 bits (392), Expect = 9e-50
Identities = 49/113 (43%), Positives = 71/113 (62%), Gaps = 11/113 (9%)
Query: 43 EIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDA 102
+ + F+ +G+ I+G GD++L LAH I +EGACE S+AC+TCHV V E+ +
Sbjct: 2 TGIKVFFVTPEGREIMIEGNEGDSILDLAHANNIDLEGACEGSVACSTCHVIVDPEHYEL 61
Query: 103 LPPAEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLP 155
L P EE E+D+LDLA L++ SRLGCQ++L K+L+GI V +P
Sbjct: 62 LDPPEEDEEDMLDLAFGLEE-----------TSRLGCQVLLRKDLDGIRVRIP 103
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular
electron TRA electron transport, metal-binding; HET:
RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A
3n9y_C* 2jqr_B* 3na0_C*
Length = 108
Score = 153 bits (389), Expect = 3e-49
Identities = 42/118 (35%), Positives = 69/118 (58%), Gaps = 13/118 (11%)
Query: 40 SEDEIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEG--ACEASLACTTCHVYVKH 97
S + + + FI++DG+ KGK+GD++L + + + ++G ACE +LAC+TCH+ +
Sbjct: 2 SSGDKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQ 61
Query: 98 EYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLP 155
+ L ++E+D+LDLA L D SRLGCQI LTK ++ + V +P
Sbjct: 62 HIFEKLEAITDEENDMLDLAYGLTD-----------RSRLGCQICLTKAMDNMTVRVP 108
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster
biosynthes pseudomonas, metal binding protein; 1.90A
{Pseudomonas putida}
Length = 113
Score = 150 bits (380), Expect = 9e-48
Identities = 43/128 (33%), Positives = 64/128 (50%), Gaps = 21/128 (16%)
Query: 47 ITFIDKDG---KRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDAL 103
+TF+ + + ++ K G N+L LAH + I ME AC ACTTCH V + D+L
Sbjct: 4 VTFLPHEKFCPEGLTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIV-RKGFDSL 62
Query: 104 PPAEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKATRNFYV 163
A+E E+D+LD A L+ SRLGCQ+ + E + + +PK + N
Sbjct: 63 EEADELEEDMLDKAWGLEA-----------QSRLGCQVFVAD--EDLTIEIPKYSLNHAA 109
Query: 164 DGHTPKPH 171
+ PH
Sbjct: 110 EA----PH 113
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding,
iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus}
SCOP: d.15.4.1 PDB: 1e9m_A
Length = 106
Score = 148 bits (376), Expect = 3e-47
Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 11/111 (9%)
Query: 47 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIPM-EGACEASLACTTCHVYVKHEYLDALPP 105
I FI+ +G R E++ K G V+ A +P + C + AC+TCH YV ++D LP
Sbjct: 3 IIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPK 62
Query: 106 AEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPK 156
A E D++D A SRL CQI +T L+G+ V LP+
Sbjct: 63 ALPTETDMIDFAYEPNPA----------TSRLTCQIKVTSLLDGLVVHLPE 103
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A
{Novosphingobium aromaticivorans}
Length = 104
Score = 145 bits (369), Expect = 3e-46
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 12/110 (10%)
Query: 47 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPP 105
I +DG R EI+ + G +++ I + C +C TCHV V + D LP
Sbjct: 3 ILVTTRDGTRTEIQAEPGLSLMEALRDAGIDELLALCGGCCSCATCHVLVAPAFADRLPA 62
Query: 106 AEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLP 155
E+DLLD + +SRL CQI + +LEG+EV +
Sbjct: 63 LSGDENDLLDSSDHRTP-----------HSRLSCQITINDKLEGLEVEIA 101
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR
{Pseudomonas SP} SCOP: d.15.4.1
Length = 105
Score = 145 bits (367), Expect = 7e-46
Identities = 23/110 (20%), Positives = 49/110 (44%), Gaps = 11/110 (10%)
Query: 47 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPP 105
+ FID+ + + G +++ +A + +P + C S C TC + ++ +++ +
Sbjct: 3 VVFIDEQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGE 62
Query: 106 AEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLP 155
A E+DLL +RL CQ+ + ++G+ V +P
Sbjct: 63 ANPDENDLLQSTGEPMTA----------GTRLSCQVFIDPSMDGLIVRVP 102
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A
{Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A
1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C*
1put_A 1gpx_A
Length = 106
Score = 145 bits (367), Expect = 7e-46
Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 13/111 (11%)
Query: 47 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPP 105
+ ++ DG RRE+ G +++ A I + G C S +C TCHVYV + D +P
Sbjct: 3 VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPA 62
Query: 106 AEEKEDDLLD-LAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLP 155
A E+E +L+ + LK NSRL CQII+T EL+GI V +P
Sbjct: 63 ANEREIGMLESVTAELKP-----------NSRLCCQIIMTPELDGIVVDVP 102
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli}
SCOP: d.15.4.1
Length = 111
Score = 141 bits (358), Expect = 2e-44
Identities = 41/118 (34%), Positives = 56/118 (47%), Gaps = 17/118 (14%)
Query: 47 ITFIDKDG---KRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDAL 103
I + ++ G+ +L A R I +E ACE S ACTTCH V E D+L
Sbjct: 4 IVILPHQDLCPDGAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIV-REGFDSL 62
Query: 104 PPAEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKATRNF 161
P + E+EDD+LD A L+ SRL CQ +T E + V +P+ T N
Sbjct: 63 PESSEQEDDMLDKAWGLEP-----------ESRLSCQARVTD--EDLVVEIPRYTINH 107
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur
protein, metalloprotein, oxidoreductase; 2.20A
{Trichomonas vaginalis} SCOP: d.15.4.1
Length = 93
Score = 109 bits (276), Expect = 2e-32
Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 19/110 (17%)
Query: 46 NITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALP 104
IT + K G ++++K + + + + + C+ + AC C +
Sbjct: 2 TITAV-KGGVKKQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHV---SGKVA 57
Query: 105 PAEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTL 154
AE+ E + L+ + N+RL C I L+ E +G L
Sbjct: 58 AAEDDEKEFLE--------------DQPANARLACAITLSGENDGAVFEL 93
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein,
ashka family, ATPase; 2.20A {Carboxydothermus
hydrogenoformans}
Length = 631
Score = 33.3 bits (75), Expect = 0.032
Identities = 19/126 (15%), Positives = 38/126 (30%), Gaps = 11/126 (8%)
Query: 45 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALP 104
+ F D K E+ N++ + I ++ C + C C V V
Sbjct: 4 YKVLF-KPDQK--EVAISENTNLMEALNLAGINIKTVCGGAGTCGKCLVRVVDGQKRVES 60
Query: 105 PAEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKATRNFYVD 164
+ K+++ + L CQ S L +I L ++ + ++
Sbjct: 61 YGKLKQEE-------IAQGYVLACQ-TYPESDLIIEIPFDSRLTQHQIVTDDEKASGVMN 112
Query: 165 GHTPKP 170
Sbjct: 113 ELDLAE 118
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding,
ferredoxin, NADH-binding, oxidoreductase; HET: FAD;
1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2
d.15.4.2
Length = 338
Score = 31.6 bits (72), Expect = 0.10
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 10/74 (13%)
Query: 46 NITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKH-EYL---- 100
+ +DG R I G+ + A+R +I + C C TC + + Y
Sbjct: 5 QVALQFEDGVTRFICIAQGETLSDAAYRQQINIPMDC-REGECGTCRAFCESGNYDMPED 63
Query: 101 ----DALPPAEEKE 110
DAL P E ++
Sbjct: 64 NYIEDALTPEEAQQ 77
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.15
Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 102 ALPP----AEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEV 152
A+ P A ++ L + + + + V YN Q + +L ++
Sbjct: 1811 AINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE-NQQYVAAGDLRALDT 1864
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.18
Identities = 33/190 (17%), Positives = 54/190 (28%), Gaps = 58/190 (30%)
Query: 4 RNLLCKLPPVVRPNNVHRIHTSVCTRHGEYEWQDPKSEDEIVNITFIDKDGKRREIKGKV 63
R+ L V NV R+ + R E + K N+ DG + G
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK------NVLI---DG----VLG-S 161
Query: 64 GDNVL----YLAHRYEIPME--------GACEASLAC-----TTCHVYVK--HEYLDALP 104
G + L+++ + M+ C + + D
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 105 PAEEKEDDLLD-LAPFLKDNSRLGC----QNVMYNSR------LGCQIILTKELEGIEVT 153
+ + + L LK C NV N++ L C+I+LT
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-QNAKAWNAFNLSCKILLT--------- 271
Query: 154 LPKATRNFYV 163
TR V
Sbjct: 272 ----TRFKQV 277
Score = 26.7 bits (58), Expect = 4.7
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 100 LDALPPAEEKEDDLLDLAPFLKD 122
L+ L PAE ++ L+ F
Sbjct: 363 LNVLEPAEYRK-MFDRLSVFPPS 384
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin,
oxidoreductase; NMR {Methylococcus capsulatus str} SCOP:
d.15.4.2
Length = 98
Score = 29.2 bits (66), Expect = 0.24
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 46 NITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYV---KHEYLD- 101
IT + +DG+ + + ++V+ A R I + +C C TC ++
Sbjct: 6 TITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSCREG-GCATCKALCSEGDYDLKGC 64
Query: 102 ---ALPPAEEKE 110
ALPP EE+E
Sbjct: 65 SVQALPPEEEEE 76
>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas
oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas
oryzae PV}
Length = 95
Score = 28.6 bits (65), Expect = 0.30
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 50 IDKDGKRREIKGKVGDNVLY 69
+G KVGD V+Y
Sbjct: 48 PLDNGSLHAPVVKVGDKVIY 67
>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10,
folding, ADP, ATP; HET: ADP; 2.80A {Thermus
thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A
Length = 100
Score = 28.7 bits (65), Expect = 0.35
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 50 IDKDGKRREIKGKVGDNVLY 69
+ ++G+R ++ K GD V++
Sbjct: 53 VLENGQRVPLEVKEGDIVVF 72
>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli}
SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O*
1sx4_O* 2c7c_O 2c7d_O
Length = 97
Score = 27.9 bits (63), Expect = 0.67
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 50 IDKDGKRREIKGKVGDNVLY 69
I ++G+ + + KVGD V++
Sbjct: 48 ILENGEVKPLDVKVGDIVIF 67
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP:
e.59.1.1
Length = 309
Score = 28.6 bits (63), Expect = 1.1
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 87 ACTTCHVYVKHEYLDALPPAEEKEDDL----LDLA 117
C +C Y+K YL+ A+ DDL LD+
Sbjct: 255 TCPSCQGYLKQFYLEFDRHADALADDLASLALDMR 289
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase,
structural genomics, PSI, PR structure initiative,
nysgrc; 2.20A {Streptomyces coelicolor}
Length = 352
Score = 28.5 bits (64), Expect = 1.2
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 97 HEYLDALPPAEEKEDDLLDLAPFL 120
E LDA+ + D LA F+
Sbjct: 316 IEALDAVDMPDRVRDRFTALADFV 339
>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET:
1PE; 1.83A {Saccharomyces cerevisiae EC1118}
Length = 204
Score = 26.9 bits (60), Expect = 2.7
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 108 EKEDDLLDLAPFLKDNSRLGCQNV 131
E +D L+ L PFL+ + ++V
Sbjct: 158 EADDKLVRLIPFLEYLATQQTKDV 181
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein
structure initiative, geranylge pyrophosphate synthase;
1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Length = 380
Score = 26.2 bits (58), Expect = 5.6
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 97 HEYLDALPPAEEKEDDLLDLAPFL 120
+LD + +E L LA
Sbjct: 345 LAHLDDVDIPDEVRAQLRALAIRS 368
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas
aeruginosa}
Length = 191
Score = 26.0 bits (58), Expect = 6.6
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 12/46 (26%)
Query: 110 EDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLP 155
+DDL + F++D C+ V YN ++ I V LP
Sbjct: 97 KDDLEGVLTFIEDGMTDICEAVFYNDKV------------ISVELP 130
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin
binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Length = 108
Score = 25.0 bits (55), Expect = 8.1
Identities = 6/25 (24%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 3 LRN--LLCKLPPVVRPNNVHRIHTS 25
L++ +LC+L ++P +V +++
Sbjct: 28 LKDGVILCELINKLQPGSVQKVNDP 52
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.433
Gapped
Lambda K H
0.267 0.0480 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,747,378
Number of extensions: 154911
Number of successful extensions: 400
Number of sequences better than 10.0: 1
Number of HSP's gapped: 369
Number of HSP's successfully gapped: 32
Length of query: 171
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 84
Effective length of database: 4,272,666
Effective search space: 358903944
Effective search space used: 358903944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.2 bits)