RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1435
(171 letters)
>d2bt6a1 d.15.4.1 (A:5-108) Adrenodoxin {Cow (Bos taurus) [TaxId:
9913]}
Length = 104
Score = 98.1 bits (244), Expect = 7e-28
Identities = 41/115 (35%), Positives = 68/115 (59%), Gaps = 13/115 (11%)
Query: 43 EIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEG--ACEASLACTTCHVYVKHEYL 100
+ + + FI++DG+ KGK+GD++L + + + ++G ACE +LAC+TCH+ +
Sbjct: 1 DKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIF 60
Query: 101 DALPPAEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLP 155
+ L ++E+D+LDLA L D S RLGCQI LTK ++ + V +P
Sbjct: 61 EKLEAITDEENDMLDLAYGLTDRS-----------RLGCQICLTKAMDNMTVRVP 104
>d1b9ra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Pseudomonas sp.,
terpredoxin [TaxId: 306]}
Length = 105
Score = 93.1 bits (231), Expect = 6e-26
Identities = 23/110 (20%), Positives = 49/110 (44%), Gaps = 11/110 (10%)
Query: 47 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPP 105
+ FID+ + + G +++ +A + +P + C S C TC + ++ +++ +
Sbjct: 3 VVFIDEQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGE 62
Query: 106 AEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLP 155
A E+DLL +RL CQ+ + ++G+ V +P
Sbjct: 63 ANPDENDLLQSTGEPMTA----------GTRLSCQVFIDPSMDGLIVRVP 102
>d1e9ma_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Rhodobacter capsulatus,
ferredoxin VI [TaxId: 1061]}
Length = 106
Score = 92.8 bits (230), Expect = 1e-25
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 11/111 (9%)
Query: 47 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPP 105
I FI+ +G R E++ K G V+ A +P ++ C + AC+TCH YV ++D LP
Sbjct: 3 IIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPK 62
Query: 106 AEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPK 156
A E D++D A SRL CQI +T L+G+ V LP+
Sbjct: 63 ALPTETDMIDFAYEPNP----------ATSRLTCQIKVTSLLDGLVVHLPE 103
>d1xlqa1 d.15.4.1 (A:1-106) 2Fe-2S ferredoxin {Pseudomonas putida,
putidaredoxin [TaxId: 303]}
Length = 106
Score = 92.4 bits (229), Expect = 1e-25
Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 13/111 (11%)
Query: 47 ITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALPP 105
+ ++ DG RRE+ G +++ A I + G C S +C TCHVYV + D +P
Sbjct: 3 VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPA 62
Query: 106 AEEKEDDLLD-LAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLP 155
A E+E +L+ + LK NSRL C QII+T EL+GI V +P
Sbjct: 63 ANEREIGMLESVTAELKPNSRLCC-----------QIIMTPELDGIVVDVP 102
>d1i7ha_ d.15.4.1 (A:) Adrenodoxin-like ferredoxin {Escherichia coli
[TaxId: 562]}
Length = 109
Score = 78.5 bits (193), Expect = 4e-20
Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 17/118 (14%)
Query: 47 ITFIDKDG---KRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDAL 103
I + ++ G+ +L A R I +E ACE S ACTTCH V+ + D+L
Sbjct: 3 IVILPHQDLCPDGAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGF-DSL 61
Query: 104 PPAEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKATRNF 161
P + E+EDD+LD A L+ SRL CQ +T E + V +P+ T N
Sbjct: 62 PESSEQEDDMLDKAWGLEP-----------ESRLSCQARVTD--EDLVVEIPRYTINH 106
>d1l5pa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Trichomonas vaginalis
[TaxId: 5722]}
Length = 93
Score = 75.0 bits (184), Expect = 6e-19
Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 19/110 (17%)
Query: 46 NITFIDKDGKRREIKGKVGDNVLYLAHRYEIP-MEGACEASLACTTCHVYVKHEYLDALP 104
IT + K G ++++K + + + + + C+ + AC C +
Sbjct: 2 TITAV-KGGVKKQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVS---GKVA 57
Query: 105 PAEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTL 154
AE+ E + L+ P N+RL C I L+ E +G L
Sbjct: 58 AAEDDEKEFLEDQP--------------ANARLACAITLSGENDGAVFEL 93
>d1krha3 d.15.4.2 (A:2-105) Benzoate dioxygenase reductase,
N-terminal domain {Acinetobacter sp. [TaxId: 472]}
Length = 104
Score = 40.7 bits (95), Expect = 8e-06
Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 46 NITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPP 105
+ +DG R I G+ + A+R +I + C C TC + +P
Sbjct: 4 QVALQFEDGVTRFICIAQGETLSDAAYRQQINIPMDCREG-ECGTCRAF-CESGNYDMPE 61
Query: 106 AEEKEDDLLDLAPFLKDNSRLGCQ 129
ED L + L CQ
Sbjct: 62 DNYIEDALTP--EEAQQGYVLACQ 83
>d1jq4a_ d.15.4.2 (A:) Methane monooxygenase reductase N-terminal
domain {Methylococcus capsulatus [TaxId: 414]}
Length = 98
Score = 40.0 bits (93), Expect = 1e-05
Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Query: 46 NITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPP 105
IT + +DG+ + + ++V+ A R I + +C C TC D
Sbjct: 6 TITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSCREG-GCATCKALCSEGDYDLKGC 64
Query: 106 AEEKEDDLLDLAPFLKDNSRLGCQ 129
+ + ++ L C+
Sbjct: 65 SVQALPPEE-----EEEGLVLLCR 83
>d2fug33 d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chain 3,
Nqo3, N-terminal domain {Thermus thermophilus [TaxId:
274]}
Length = 95
Score = 37.2 bits (85), Expect = 1e-04
Identities = 10/90 (11%), Positives = 22/90 (24%), Gaps = 12/90 (13%)
Query: 45 VNITFIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGAC-----EASLACTTCHVYVKHEY 99
V + + + ++ G +V+ + C AC C V +
Sbjct: 2 VRVKV---NDR--IVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPK 56
Query: 100 LDALPPAEEKEDDLLDLAPFLKDNSRLGCQ 129
E ++ + C
Sbjct: 57 KGPDGKPLLNEKGEPEIQ--WQPKLAASCV 84
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 290
Score = 28.7 bits (64), Expect = 0.28
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 64 GDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKEDDL----LDLA 117
L L H + + A C +C Y+K YL+ A+ DDL LD+
Sbjct: 215 HLAYLSLEHDGQPAEKAVLRAE-TCPSCQGYLKQFYLEFDRHADALADDLASLALDMR 271
>d1w36c3 c.52.1.25 (C:818-1121) Exodeoxyribonuclease V beta chain
(RecC), C-terminal domain {Escherichia coli [TaxId:
562]}
Length = 304
Score = 25.8 bits (56), Expect = 3.0
Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 12/68 (17%)
Query: 98 EYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKELEGIEVTLPKA 157
E++ LP + L L F R + RL + E I T P
Sbjct: 2 EFVQPLPFTLPETVPLETLQRFWAHPVR-----AFFQMRLQ--VNFRTEDSEIPDTEP-- 52
Query: 158 TRNFYVDG 165
F ++G
Sbjct: 53 ---FILEG 57
>d1k6ya1 a.4.10.1 (A:1-46) N-terminal Zn binding domain of HIV
integrase {Human immunodeficiency virus type 1 [TaxId:
11676]}
Length = 46
Score = 23.8 bits (52), Expect = 3.1
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 49 FIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHV 93
F+D K +E K N +A + +P A E +C C +
Sbjct: 1 FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQL 45
>d1cora_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas stutzeri [TaxId:
316]}
Length = 82
Score = 24.6 bits (52), Expect = 3.5
Identities = 11/64 (17%), Positives = 18/64 (28%)
Query: 87 ACTTCHVYVKHEYLDALPPAEEKEDDLLDLAPFLKDNSRLGCQNVMYNSRLGCQIILTKE 146
C CH A K A L + + G Q V + + +E
Sbjct: 11 PCAACHSIDAKLVGPAFKEVAAKYAGQDGAADLLAGHIKNGSQGVWGPIPMPPNPVTEEE 70
Query: 147 LEGI 150
+ +
Sbjct: 71 AKIL 74
>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia
coli [TaxId: 562]}
Length = 268
Score = 25.7 bits (55), Expect = 3.7
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 83 EASLACTTCHVY--VKHEYLDALPPAEEKEDDLLDLAPFL 120
+ S C H + K Y++ LP ++ D D A +
Sbjct: 15 KNSYICPQRHQFDMAKEGYVNLLPVQHKRSRDPGDSAEMM 54
>d1sp3a_ a.138.1.3 (A:) Putative Cytochrome c {Shewanella oneidensis
[TaxId: 70863]}
Length = 442
Score = 25.3 bits (54), Expect = 4.7
Identities = 9/62 (14%), Positives = 16/62 (25%)
Query: 51 DKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCHVYVKHEYLDALPPAEEKE 110
G +K D+ + + + + C CH KH+
Sbjct: 144 FYGGGGDAVKHGDLDSSMAYPDKATDVHMDSDGNNFQCQNCHTTEKHQISGNAMGVSPGG 203
Query: 111 DD 112
D
Sbjct: 204 ID 205
>d1e0ea_ a.4.10.1 (A:) N-terminal Zn binding domain of HIV
integrase {Human immunodeficiency virus type 2 [TaxId:
11709]}
Length = 46
Score = 23.1 bits (50), Expect = 4.7
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 49 FIDKDGKRREIKGKVGDNVLYLAHRYEIPMEGACEASLACTTCH 92
F++K +E K NV L+H++ IP A + +C C
Sbjct: 1 FLEKIEPAQEEHEKYHSNVKELSHKFGIPNLVARQIVNSCAQCQ 44
>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Azotobacter vinelandii [TaxId: 354]}
Length = 79
Score = 23.7 bits (51), Expect = 6.5
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Query: 43 EIVNITFIDKDGKRREIKGKVGDNVLYLAHRYEI---PMEGACEASLACTTCHVYVK 96
EI+ + I DG+ E+ K GD + + + A V VK
Sbjct: 2 EIIRVPDIGGDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVK 58
>d1we3o_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus thermophilus
[TaxId: 274]}
Length = 96
Score = 23.7 bits (51), Expect = 7.9
Identities = 10/41 (24%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 41 EDEIVNITFIDKDGKRREIKGKVGDNVLYLAH-RYEIPMEG 80
+ V + ++G+R ++ K GD V++ + EI ++G
Sbjct: 40 KVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDG 80
>d1ex0a4 d.3.1.4 (A:191-510) Transglutaminase catalytic domain
{Human (Homo sapiens), blood isozyme [TaxId: 9606]}
Length = 320
Score = 24.4 bits (53), Expect = 9.4
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 110 EDDLLDLAPFLKDNSRLGCQ---NVMYNSRLGCQIILTKELEGIEVTLPKATRNFYVDGH 166
ED +LD ++ D +++ N + SR+G ++ K+ EG+ V N Y G
Sbjct: 41 EDGILDTCLYVMDRAQMDLSGRGNPIKVSRVGSAMVNAKDDEGVLVGSFD---NIYAYGV 97
Query: 167 TP 168
P
Sbjct: 98 PP 99
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.139 0.433
Gapped
Lambda K H
0.267 0.0506 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 690,564
Number of extensions: 31418
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 24
Length of query: 171
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,322,926
Effective search space: 121709192
Effective search space used: 121709192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.6 bits)