BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14358
         (381 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WDC|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb In Complex
           With Glycerol
 pdb|2WDD|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb In Complex
           With Sulfate
 pdb|2WDE|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb In Complex
           With Thiosulfate
 pdb|2WDF|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb
          Length = 562

 Score = 28.5 bits (62), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 26/131 (19%), Positives = 48/131 (36%), Gaps = 16/131 (12%)

Query: 161 WVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLPVLRTYRS 220
           W+V      K + ++D  ++   I    L  R L           P++ E LP      +
Sbjct: 301 WIVAGSAAGKALMRVDLKLWKGGIA--NLRVRVL-----------PVLAEHLPKAEDVEA 347

Query: 221 KWRVSFSEYRDHFYPPHCHGNALLYSPDVVFKLYQHLQTDQE---YFWVDDVFITGIVFS 277
             +   + ++DH + P      LLY  D ++  +  L  +     Y  V+ VF   + + 
Sbjct: 348 FLKAQLAPHQDHLFTPLAVSETLLYKRDTLYSTWDQLVGEAVKAIYPEVEVVFSPAVRWG 407

Query: 278 KLNLTHAKFSW 288
              L     +W
Sbjct: 408 TTILPGQAITW 418


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.140    0.458 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,286,153
Number of Sequences: 62578
Number of extensions: 465690
Number of successful extensions: 1085
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1084
Number of HSP's gapped (non-prelim): 1
length of query: 381
length of database: 14,973,337
effective HSP length: 101
effective length of query: 280
effective length of database: 8,652,959
effective search space: 2422828520
effective search space used: 2422828520
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)