Query psy14358
Match_columns 381
No_of_seqs 234 out of 1241
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 17:50:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14358.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14358hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2287|consensus 100.0 2.9E-55 6.3E-60 436.8 24.5 247 69-319 74-335 (349)
2 PLN03133 beta-1,3-galactosyltr 100.0 1E-51 2.2E-56 431.9 24.9 232 78-319 375-622 (636)
3 PF01762 Galactosyl_T: Galacto 100.0 3.2E-49 6.9E-54 362.5 16.7 185 99-287 1-195 (195)
4 PLN03193 beta-1,3-galactosyltr 100.0 9.4E-47 2E-51 375.5 20.6 198 86-292 140-356 (408)
5 PTZ00210 UDP-GlcNAc-dependent 100.0 1.7E-40 3.7E-45 326.5 19.6 239 72-331 62-373 (382)
6 KOG2288|consensus 100.0 1.8E-34 3.8E-39 269.4 15.2 194 86-287 12-221 (274)
7 PF02434 Fringe: Fringe-like; 99.8 2.5E-19 5.4E-24 171.5 13.1 209 86-310 7-232 (252)
8 KOG2246|consensus 99.7 9.1E-17 2E-21 160.9 11.4 165 86-287 92-269 (364)
9 PLN03153 hypothetical protein; 99.3 4.8E-11 1E-15 122.7 18.3 195 86-311 123-344 (537)
10 KOG3708|consensus 96.6 0.0064 1.4E-07 63.1 7.9 154 86-282 27-188 (681)
11 PF01755 Glyco_transf_25: Glyc 96.3 0.056 1.2E-06 49.2 11.4 97 89-191 4-107 (200)
12 PF13641 Glyco_tranf_2_3: Glyc 95.9 0.34 7.4E-06 44.1 14.6 186 87-285 3-201 (228)
13 cd04186 GT_2_like_c Subfamily 94.8 0.81 1.8E-05 38.8 12.5 84 168-287 74-158 (166)
14 cd06532 Glyco_transf_25 Glycos 94.3 0.48 1E-05 40.5 10.0 115 89-259 2-119 (128)
15 cd02520 Glucosylceramide_synth 94.3 2.3 5.1E-05 38.1 15.0 142 105-285 25-168 (196)
16 TIGR03472 HpnI hopanoid biosyn 94.3 0.89 1.9E-05 45.8 13.4 188 87-285 43-244 (373)
17 cd04192 GT_2_like_e Subfamily 94.2 1.9 4.1E-05 38.9 14.3 166 105-281 21-195 (229)
18 TIGR03469 HonB hopene-associat 93.9 3.1 6.8E-05 42.1 16.6 190 86-284 41-252 (384)
19 cd04196 GT_2_like_d Subfamily 93.8 2 4.3E-05 38.2 13.5 156 111-278 27-188 (214)
20 cd02525 Succinoglycan_BP_ExoA 93.2 4.3 9.4E-05 37.0 15.1 164 111-287 31-201 (249)
21 cd04185 GT_2_like_b Subfamily 92.2 4.8 0.0001 35.8 13.6 95 156-283 69-163 (202)
22 cd06433 GT_2_WfgS_like WfgS an 92.2 7.3 0.00016 33.9 14.8 123 157-287 65-187 (202)
23 PF00535 Glycos_transf_2: Glyc 92.1 1.7 3.7E-05 36.4 9.9 151 95-253 10-168 (169)
24 PLN02726 dolichyl-phosphate be 91.5 6.5 0.00014 36.6 14.2 189 86-287 10-211 (243)
25 cd06423 CESA_like CESA_like is 90.8 3.9 8.5E-05 34.1 10.9 137 111-254 26-170 (180)
26 cd06421 CESA_CelA_like CESA_Ce 90.7 7.1 0.00015 35.3 13.3 186 88-285 4-202 (234)
27 cd02510 pp-GalNAc-T pp-GalNAc- 90.7 14 0.0003 35.6 15.9 122 158-285 74-216 (299)
28 cd06434 GT2_HAS Hyaluronan syn 90.7 5.7 0.00012 36.1 12.6 76 111-194 28-103 (235)
29 cd04187 DPM1_like_bac Bacteria 90.6 5.6 0.00012 34.8 12.1 138 111-258 29-167 (181)
30 PF04646 DUF604: Protein of un 89.8 0.47 1E-05 45.6 4.7 72 239-311 12-93 (255)
31 cd06439 CESA_like_1 CESA_like_ 89.6 9.2 0.0002 35.3 13.2 180 86-284 30-219 (251)
32 PRK11204 N-glycosyltransferase 89.3 16 0.00035 37.0 15.7 180 86-285 55-251 (420)
33 cd02526 GT2_RfbF_like RfbF is 87.6 22 0.00047 32.3 15.4 185 90-286 2-196 (237)
34 PF13506 Glyco_transf_21: Glyc 87.3 2.2 4.7E-05 38.6 7.1 128 151-287 15-147 (175)
35 cd06435 CESA_NdvC_like NdvC_li 87.0 11 0.00025 34.2 12.0 117 157-286 72-201 (236)
36 COG1216 Predicted glycosyltran 84.9 40 0.00086 32.8 16.7 189 87-285 5-211 (305)
37 cd04179 DPM_DPG-synthase_like 83.1 22 0.00047 30.7 11.4 144 101-254 17-167 (185)
38 cd06427 CESA_like_2 CESA_like_ 81.6 40 0.00087 31.1 13.2 184 88-286 4-204 (241)
39 PRK14583 hmsR N-glycosyltransf 80.7 73 0.0016 32.8 16.1 179 86-285 76-272 (444)
40 COG1215 Glycosyltransferases, 80.3 68 0.0015 32.2 15.6 191 86-287 55-258 (439)
41 cd06420 GT2_Chondriotin_Pol_N 79.1 41 0.00089 29.0 15.7 101 159-285 71-171 (182)
42 cd06438 EpsO_like EpsO protein 77.8 42 0.00091 29.4 11.5 86 158-252 71-169 (183)
43 cd04191 Glucan_BSP_ModH Glucan 77.0 29 0.00064 33.2 10.9 187 89-287 3-224 (254)
44 PRK10714 undecaprenyl phosphat 75.2 56 0.0012 32.4 12.7 182 86-286 7-196 (325)
45 PRK14716 bacteriophage N4 adso 74.0 79 0.0017 33.6 14.0 187 86-287 67-282 (504)
46 cd06442 DPM1_like DPM1_like re 73.4 68 0.0015 28.6 13.1 120 159-287 70-196 (224)
47 cd04188 DPG_synthase DPG_synth 71.4 76 0.0016 28.4 11.8 164 111-287 30-201 (211)
48 PF13632 Glyco_trans_2_3: Glyc 69.4 14 0.0003 32.7 6.3 107 171-286 1-116 (193)
49 cd04184 GT2_RfbC_Mx_like Myxoc 64.9 96 0.0021 27.1 17.3 183 88-287 4-194 (202)
50 TIGR01556 rhamnosyltran L-rham 63.7 46 0.00099 31.5 9.0 122 158-285 65-192 (281)
51 cd04195 GT2_AmsE_like GT2_AmsE 60.8 1.2E+02 0.0025 26.6 14.7 158 112-286 30-193 (201)
52 cd00761 Glyco_tranf_GTA_type G 60.0 87 0.0019 24.9 12.1 34 158-192 68-101 (156)
53 cd02522 GT_2_like_a GT_2_like_ 58.0 1.4E+02 0.0029 26.5 13.3 110 159-283 64-176 (221)
54 PF14851 FAM176: FAM176 family 55.9 19 0.00042 32.2 4.5 19 11-29 31-49 (153)
55 PF10111 Glyco_tranf_2_2: Glyc 55.5 2E+02 0.0042 27.6 14.7 166 111-285 34-213 (281)
56 PRK11234 nfrB bacteriophage N4 52.7 3E+02 0.0064 30.8 14.0 186 86-285 64-277 (727)
57 cd02514 GT13_GLCNAC-TI GT13_GL 44.9 54 0.0012 33.0 6.2 83 158-253 88-174 (334)
58 TIGR03030 CelA cellulose synth 41.0 2.6E+02 0.0057 30.9 11.4 128 150-287 212-351 (713)
59 PRK11498 bcsA cellulose syntha 37.7 3.2E+02 0.0069 31.2 11.4 184 86-286 261-461 (852)
60 cd06437 CESA_CaSu_A2 Cellulose 36.6 3.2E+02 0.007 24.6 13.7 34 158-192 78-111 (232)
61 PF04666 Glyco_transf_54: N-Ac 36.5 1.8E+02 0.004 28.8 8.4 101 82-184 49-185 (297)
62 PF13704 Glyco_tranf_2_4: Glyc 34.9 2.2E+02 0.0047 22.2 7.2 70 111-185 18-88 (97)
63 TIGR03111 glyc2_xrt_Gpos1 puta 33.9 5.4E+02 0.012 26.4 12.5 102 86-193 50-156 (439)
64 PF05412 Peptidase_C33: Equine 32.0 27 0.00059 29.3 1.5 28 153-180 48-80 (108)
65 COG4092 Predicted glycosyltran 29.2 3.1E+02 0.0066 27.2 8.2 91 98-191 19-117 (346)
66 PRK10299 PhoPQ regulatory prot 28.8 26 0.00056 25.1 0.7 22 6-29 5-26 (47)
67 PRK05454 glucosyltransferase M 25.9 7.1E+02 0.015 27.7 11.5 189 86-287 125-349 (691)
68 PF03452 Anp1: Anp1; InterPro 24.9 4.8E+02 0.01 25.6 8.9 84 111-194 56-168 (269)
69 PF12273 RCR: Chitin synthesis 24.3 37 0.0008 29.1 1.0 16 6-21 1-16 (130)
70 PF03213 Pox_P35: Poxvirus P35 23.3 1.3E+02 0.0029 30.0 4.8 99 239-345 185-291 (325)
71 cd04190 Chitin_synth_C C-termi 22.6 68 0.0015 29.9 2.6 110 167-284 72-210 (244)
72 PTZ00260 dolichyl-phosphate be 21.8 7.8E+02 0.017 24.3 18.7 190 86-287 71-285 (333)
No 1
>KOG2287|consensus
Probab=100.00 E-value=2.9e-55 Score=436.81 Aligned_cols=247 Identities=31% Similarity=0.492 Sum_probs=218.0
Q ss_pred cCCCCcccee-c-CCCCCC---cEEEEEECCCCCHHHHHHHHHHhcc-------CceEEEEecCCC-h-hhHHHHHHHHh
Q psy14358 69 INLTNFEFLI-N-PPCLDT---VYLVLIHSAPYNYDKRRLIRNTWGT-------RVSVYFFIGETD-P-SNQTRLDIESE 134 (381)
Q Consensus 69 ~~~~~f~~li-~-~~C~~~---~Lli~V~S~p~~~~rR~aIR~TWg~-------~v~~~FvlG~~~-~-~~~~~L~~E~~ 134 (381)
.++..+.+++ . +.|... +++++|+|+++|++||++||+|||+ .++++|++|.+. + ++++.|++|++
T Consensus 74 ~~~~~~~~~l~~p~~~~~~~~~~lLl~V~S~~~~farR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~ 153 (349)
T KOG2287|consen 74 ADFQKFFYLLYLPEICDPDRPPELLLLVKSAPDNFARRNAIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADEAR 153 (349)
T ss_pred hhhccChhhhcCChhhcCCCCceEEEEEecCCCCHHHHHHHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHHHH
Confidence 3555555555 4 455543 7999999999999999999999999 589999999993 3 45899999999
Q ss_pred hCCCEEEecccCCCCchhHHHHHHHHHHHHhCCCccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecCCcc
Q psy14358 135 TYHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLPV 214 (381)
Q Consensus 135 ~~~DII~~df~DsY~NLt~Ktl~~lkw~~~~cp~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~~~ 214 (381)
.||||||+||.|+|.|||+||+++++|+.++||+|+||+|+|||+|+|+++|+++|..... +.+.+++|.+ ..+.+|
T Consensus 154 ~ygDIi~~df~Dty~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~--~~~~~~~G~v-~~~~~p 230 (349)
T KOG2287|consen 154 LYGDIIQVDFEDTYFNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLND--PSSDLYYGRV-IQNAPP 230 (349)
T ss_pred HhCCEEEEecccchhchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCC--CCcceEEEee-cccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999842 4789999999 778999
Q ss_pred eeccCCccccccccccCCCCCCccccceEeeCHHHHHHHHHHhccCCCCCCccchhhHHhhHHhCCCceeecCCCCCCCC
Q psy14358 215 LRTYRSKWRVSFSEYRDHFYPPHCHGNALLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFSWWPGHDE 294 (381)
Q Consensus 215 ~R~~~sKwyv~~~~yp~~~yP~Y~~G~gYvLS~d~a~~l~~~~~~~~~~~~~EDV~vTGi~l~~~gi~~~~~~~f~~~~~ 294 (381)
+|++.+|||||+++||++.||+||+|+||++|+++|++|++++.+ .+++++|||++||++++.+||++.+++++.....
T Consensus 231 ~R~~~~KwyVp~~~y~~~~YP~Y~sG~gYvis~~~a~~l~~~s~~-~~~~~iEDV~~g~~l~~~~gi~~~~~~~~~~~~~ 309 (349)
T KOG2287|consen 231 IRDKTSKWYVPESEYPCSVYPPYASGPGYVISGDAARRLLKASKH-LKFFPIEDVFVGGCLAEDLGIKPVNHPGFFEIPL 309 (349)
T ss_pred CCCCCCCCccCHHHCCCCCCCCcCCCceeEecHHHHHHHHHHhcC-CCccchHHHHHHHHHHHhcCCCcccCcccccccc
Confidence 999999999999999999999999999999999999999999999 9999999999955555555999999998655554
Q ss_pred Ce-eeecCceeEEeccCHHHHHHccc
Q psy14358 295 PV-VILYSKMDLQHNLSQYILAKLNL 319 (381)
Q Consensus 295 ~~-~~~~~~~i~~H~~spy~m~~~~~ 319 (381)
.+ .||+.++++.|..+|.+|..++.
T Consensus 310 ~~~~~~~~~~~~~H~~~p~e~~~~w~ 335 (349)
T KOG2287|consen 310 SFDPCCYRDLLAVHRLSPNEMIYLWK 335 (349)
T ss_pred cCCCCcccceEEEecCCHHHHHHHHH
Confidence 44 58999999999999976555443
No 2
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1e-51 Score=431.92 Aligned_cols=232 Identities=27% Similarity=0.331 Sum_probs=202.6
Q ss_pred ecCCCCCC---cEEEEEECCCCCHHHHHHHHHHhcc-------CceEEEEecCC-ChhhHHHHHHHHhhCCCEEEecccC
Q psy14358 78 INPPCLDT---VYLVLIHSAPYNYDKRRLIRNTWGT-------RVSVYFFIGET-DPSNQTRLDIESETYHDIVQGRFWD 146 (381)
Q Consensus 78 i~~~C~~~---~Lli~V~S~p~~~~rR~aIR~TWg~-------~v~~~FvlG~~-~~~~~~~L~~E~~~~~DII~~df~D 146 (381)
..++|+.. +|+|+|+|+|+|++||+|||+|||+ .++++|++|.+ +..+++.|++|+++||||||+||.|
T Consensus 375 kAppL~~~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~~~~~~v~~rFvVG~s~n~~l~~~L~~Ea~~ygDIIq~dF~D 454 (636)
T PLN03133 375 KSPPLSPKKPLDLFIGVFSTANNFKRRMAVRRTWMQYDAVRSGAVAVRFFVGLHKNQMVNEELWNEARTYGDIQLMPFVD 454 (636)
T ss_pred cCCCCCCCCceEEEEEEeCCcccHHHHHHHHHhhccccccCCCceEEEEEEecCCcHHHHHHHHHHHHHcCCeEEEeeec
Confidence 35567643 8999999999999999999999998 47899999999 7788999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhCCCccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecCCcceeccCCcccccc
Q psy14358 147 SYRNLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLPVLRTYRSKWRVSF 226 (381)
Q Consensus 147 sY~NLt~Ktl~~lkw~~~~cp~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~~~~R~~~sKwyv~~ 226 (381)
+|+|||+||++++.|+. +|++++|+||+|||+|||+++|+++|+.... .+++|+|.+ ..+..|+|++.+|||||.
T Consensus 455 sY~NLTlKtl~~~~wa~-~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~---~~~Ly~G~v-~~~~~PiRd~~sKWYVs~ 529 (636)
T PLN03133 455 YYSLITWKTLAICIFGT-EVVSAKYVMKTDDDAFVRVDEVLASLKRTNV---SHGLLYGLI-NSDSQPHRNPDSKWYISP 529 (636)
T ss_pred hhhhhHHHHHHHHHHHH-hCCCceEEEEcCCceEEcHHHHHHHHHhcCC---CCceEEEEe-ccCCCcccCCCCCCCCCH
Confidence 99999999999999985 6889999999999999999999999986542 567999998 778899999999999999
Q ss_pred ccccCCCCCCccccceEeeCHHHHHHHHHHhc--cCCCCCCccchhhHHhhHH---hCCCceeecCCCCCCCCCeeeecC
Q psy14358 227 SEYRDHFYPPHCHGNALLYSPDVVFKLYQHLQ--TDQEYFWVDDVFITGIVFS---KLNLTHAKFSWWPGHDEPVVILYS 301 (381)
Q Consensus 227 ~~yp~~~yP~Y~~G~gYvLS~d~a~~l~~~~~--~~~~~~~~EDV~vTGi~l~---~~gi~~~~~~~f~~~~~~~~~~~~ 301 (381)
++||++.|||||+|+|||||+|+|+.|+.++. . ++.|++|||+| |+|++ ++|+.+.+...+.... ..|..
T Consensus 530 ~eyp~~~YPpYasG~gYVlS~Dla~~L~~~s~s~~-l~~f~lEDVyv-Gi~l~~l~k~gl~v~~~~~~r~~~---~~C~~ 604 (636)
T PLN03133 530 EEWPEETYPPWAHGPGYVVSRDIAKEVYKRHKEGR-LKMFKLEDVAM-GIWIAEMKKEGLEVKYENDGRIYN---EGCKD 604 (636)
T ss_pred HHCCCCCCCCCCCcCEEEEcHHHHHHHHHhhhhcc-cCcCChhhHhH-HHHHHHhcccCCCceeeCCCcccC---CcCCC
Confidence 99999999999999999999999999998863 5 89999999999 99975 4677776554332221 23557
Q ss_pred ceeEEeccCHHHHHHccc
Q psy14358 302 KMDLQHNLSQYILAKLNL 319 (381)
Q Consensus 302 ~~i~~H~~spy~m~~~~~ 319 (381)
++++.|+++|.+|..++.
T Consensus 605 ~~i~~H~~sP~eM~~lW~ 622 (636)
T PLN03133 605 GYVVAHYQSPREMLCLWQ 622 (636)
T ss_pred CeEEEecCCHHHHHHHHH
Confidence 788999999998877655
No 3
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=3.2e-49 Score=362.48 Aligned_cols=185 Identities=42% Similarity=0.713 Sum_probs=172.8
Q ss_pred HHHHHHHHHhcc-------CceEEEEecCC---ChhhHHHHHHHHhhCCCEEEecccCCCCchhHHHHHHHHHHHHhCCC
Q psy14358 99 DKRRLIRNTWGT-------RVSVYFFIGET---DPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPH 168 (381)
Q Consensus 99 ~rR~aIR~TWg~-------~v~~~FvlG~~---~~~~~~~L~~E~~~~~DII~~df~DsY~NLt~Ktl~~lkw~~~~cp~ 168 (381)
+||++||+||++ .++++|++|.+ +..+++.|.+|+++|+||||+||.|+|.|||+|++++++|+.++||+
T Consensus 1 ~rR~~IR~TW~~~~~~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~~~c~~ 80 (195)
T PF01762_consen 1 ERRQAIRETWGNQRNFKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWASKHCPN 80 (195)
T ss_pred ChHHHHHHHHhcccccCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHHhhCCc
Confidence 589999999998 78999999999 45678889999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecCCcceeccCCccccccccccCCCCCCccccceEeeCHH
Q psy14358 169 VKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLPVLRTYRSKWRVSFSEYRDHFYPPHCHGNALLYSPD 248 (381)
Q Consensus 169 a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~~~~R~~~sKwyv~~~~yp~~~yP~Y~~G~gYvLS~d 248 (381)
++|++|+|||+|||+++|.++|...... ..++.++|.. ..+.+|.|++.+|||+|.++||.+.||+||+|+||+||++
T Consensus 81 ~~~v~k~DDD~~vn~~~l~~~L~~~~~~-~~~~~~~g~~-~~~~~~~r~~~~kw~v~~~~y~~~~yP~y~~G~~yvls~~ 158 (195)
T PF01762_consen 81 AKYVLKVDDDVFVNPDRLVSFLKSLKQD-PSKNSIYGGC-IKNGPPIRDPSSKWYVSEEEYPDDYYPPYCSGGGYVLSSD 158 (195)
T ss_pred hhheeecCcEEEEehHHhhhhhhhcccC-cccccccccc-ccCCccccccccCceeeeeecccccCCCcCCCCeEEecHH
Confidence 9999999999999999999999987221 3567888988 7778899999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCccchhhHHhhHHhCCCceeecC
Q psy14358 249 VVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFS 287 (381)
Q Consensus 249 ~a~~l~~~~~~~~~~~~~EDV~vTGi~l~~~gi~~~~~~ 287 (381)
+|+.|++++.. ++.+++|||++ |+|++++||++.|++
T Consensus 159 ~v~~i~~~~~~-~~~~~~eDv~i-Gi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 159 VVKRIYKASSH-TPFFPLEDVFI-GILAEKLGIKPIHDP 195 (195)
T ss_pred HHHHHHHHhhc-CCCCCchHHHH-HHHHHHCCCCccCCC
Confidence 99999999999 99999999999 999999999999864
No 4
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=9.4e-47 Score=375.48 Aligned_cols=198 Identities=19% Similarity=0.225 Sum_probs=177.1
Q ss_pred cEEEEEECCCCCHHHHHHHHHHhcc------------CceEEEEecCC---ChhhHHHHHHHHhhCCCEEEecccCCCCc
Q psy14358 86 VYLVLIHSAPYNYDKRRLIRNTWGT------------RVSVYFFIGET---DPSNQTRLDIESETYHDIVQGRFWDSYRN 150 (381)
Q Consensus 86 ~Lli~V~S~p~~~~rR~aIR~TWg~------------~v~~~FvlG~~---~~~~~~~L~~E~~~~~DII~~df~DsY~N 150 (381)
+++|+|+|+++|++||++||+|||+ .++++|++|++ +...+++|++|+++|||||++||.|+|.|
T Consensus 140 ~LvIgI~Sap~~~~RR~AIR~TWg~~~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~N 219 (408)
T PLN03193 140 LMVVGINTAFSSRKRRDSVRATWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLE 219 (408)
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCcccccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEeccccccc
Confidence 7889999999999999999999996 37899999998 35788999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhCCCccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecCCcceeccCCccccccccc-
Q psy14358 151 LTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLPVLRTYRSKWRVSFSEY- 229 (381)
Q Consensus 151 Lt~Ktl~~lkw~~~~cp~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~~~~R~~~sKwyv~~~~y- 229 (381)
||.||+++|+|+.++| +++|++|+|||+|||+++|+++|..... .+++|+|++ .. .|+|++.++||.+++.|
T Consensus 220 LT~KTl~~f~wA~~~~-dAkF~mK~DDDvfVnv~~L~~~L~~~~~---~~rlYiG~m-~~--gPvr~~~~~ky~epe~w~ 292 (408)
T PLN03193 220 LSAKTKTYFATAVAMW-DADFYVKVDDDVHVNIATLGETLVRHRK---KPRVYIGCM-KS--GPVLSQKGVRYHEPEYWK 292 (408)
T ss_pred chHHHHHHHHHHHHcC-CCeEEEEcCCCceEcHHHHHHHHHhcCC---CCCEEEEec-cc--CccccCCCCcCcCccccc
Confidence 9999999999999988 8999999999999999999999986532 456999987 43 36677666666665665
Q ss_pred ---cCCCCCCccccceEeeCHHHHHHHHHHhccCCCCCCccchhhHHhhHHhCCCceeecCCCCCC
Q psy14358 230 ---RDHFYPPHCHGNALLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFSWWPGH 292 (381)
Q Consensus 230 ---p~~~yP~Y~~G~gYvLS~d~a~~l~~~~~~~~~~~~~EDV~vTGi~l~~~gi~~~~~~~f~~~ 292 (381)
|++.|||||+|+|||||+|+|+.|+.+... .+.+++|||+| |+|+..++|+++|.++|-..
T Consensus 293 ~~~~~~~YPpyAsG~gYVlS~DLa~~I~~n~~~-L~~y~~EDV~v-G~Wl~~L~V~~vdd~~fcc~ 356 (408)
T PLN03193 293 FGENGNKYFRHATGQLYAISKDLASYISINQHV-LHKYANEDVSL-GSWFIGLDVEHIDDRRLCCG 356 (408)
T ss_pred ccCccccCCCCCCcceEEehHHHHHHHHhChhh-hcccCcchhhh-hhHhccCCceeeecccccCC
Confidence 679999999999999999999999988888 88899999999 99999999999999988654
No 5
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=100.00 E-value=1.7e-40 Score=326.51 Aligned_cols=239 Identities=15% Similarity=0.161 Sum_probs=194.5
Q ss_pred CCccceec---CCCCCC--cEEEEEECCCCC--HHHHHHHHHHhcc-------------CceEEEEecCC---ChhhHHH
Q psy14358 72 TNFEFLIN---PPCLDT--VYLVLIHSAPYN--YDKRRLIRNTWGT-------------RVSVYFFIGET---DPSNQTR 128 (381)
Q Consensus 72 ~~f~~li~---~~C~~~--~Lli~V~S~p~~--~~rR~aIR~TWg~-------------~v~~~FvlG~~---~~~~~~~ 128 (381)
....|+.+ ..++.. .++++|+|..++ +.||+++|+||.+ .+.++|++|.+ +.+.+++
T Consensus 62 ~~l~~~~~~~~~~w~~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~ 141 (382)
T PTZ00210 62 EYLMFVPSNVAAVWKAQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHS 141 (382)
T ss_pred hhhhccCHHHHHHhccCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHH
Confidence 44456662 356665 456899999987 8999999999877 56789999999 4589999
Q ss_pred HHHHHhhCCCEEEecc------------------cCCCCchhHHHHHHHHHHHHhCCCccEEEEeCCceeeeHHHHHHHH
Q psy14358 129 LDIESETYHDIVQGRF------------------WDSYRNLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELL 190 (381)
Q Consensus 129 L~~E~~~~~DII~~df------------------~DsY~NLt~Ktl~~lkw~~~~cp~a~fvlK~DDD~fvnv~~L~~~L 190 (381)
|++|+++|||||++|| .|++.|||+||+++++|+.+.||+++||+|+|||+|||+++++++|
T Consensus 142 L~eEA~~~~DIVilpf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~L 221 (382)
T PTZ00210 142 LKEEAARTHDIITLPTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADL 221 (382)
T ss_pred HHHHHHHhCCEEEEecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHH
Confidence 9999999999999999 6777899999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCceEEEeeeecCCcceeccCCccccccccccCCCCCCccccceEeeCHHHHHHHHHHhcc-CC--------
Q psy14358 191 TRTLSPHGTRNLLMCPIVWEKLPVLRTYRSKWRVSFSEYRDHFYPPHCHGNALLYSPDVVFKLYQHLQT-DQ-------- 261 (381)
Q Consensus 191 ~~~~~~~~~~~l~~G~~~~~~~~~~R~~~sKwyv~~~~yp~~~yP~Y~~G~gYvLS~d~a~~l~~~~~~-~~-------- 261 (381)
+.. +++++|+|.+ .....|.|+ .+||||+|+||+||+|+|+.|++.... ..
T Consensus 222 r~~----prr~LY~G~v-~~~~~p~Rd---------------~~PpY~~G~gYvLSrDVA~~Lvs~~pl~rL~~~pys~~ 281 (382)
T PTZ00210 222 RVM----PRHGLYMGRY-NYYNRIWRR---------------NQLTYVNGYCITLSRDTAQAIISYKPLERLVNMPFSMW 281 (382)
T ss_pred hhC----CCCceEEEee-CCCCccccC---------------CCCCccccceeeccHHHHHHHHhhChHhHhhcCCCchH
Confidence 766 3667999998 666566665 259999999999999999999998532 01
Q ss_pred -------CCCCccchhhHHhhH-HhCCCceeec-----CCCCCCCCCe--eeecCceeEEeccCH--H--HHHHcccc--
Q psy14358 262 -------EYFWVDDVFITGIVF-SKLNLTHAKF-----SWWPGHDEPV--VILYSKMDLQHNLSQ--Y--ILAKLNLT-- 320 (381)
Q Consensus 262 -------~~~~~EDV~vTGi~l-~~~gi~~~~~-----~~f~~~~~~~--~~~~~~~i~~H~~sp--y--~m~~~~~~-- 320 (381)
-.+..||+++ |.++ .+++.++.-. -+|+....+. .....+++++|+++| | +|++|++.
T Consensus 282 ~~~~y~~~~~~~EDiMv-G~vLr~~~k~~~l~~V~~~~c~Fhd~~~~~~~~~v~~~sVvvHhike~dYa~Lm~~F~n~~~ 360 (382)
T PTZ00210 282 DYFDFLDLGMFYEDVMV-GMILREKVVYRNLISVEMGRCHFHNAGKFGVRKSVRNMSVVIHHIQEADYEMLMDYFPEGVI 360 (382)
T ss_pred HHHHHHHhhcCchHHHH-HHHHHHhcCcCceeeeccccccceecCCCCCccccccceEEEEecCHHHHHHHHHHhcCCCC
Confidence 2478999999 9988 5555555422 2777654322 356778999999999 3 99999994
Q ss_pred --ccccccccCCC
Q psy14358 321 --HAKFSWWPGHD 331 (381)
Q Consensus 321 --~~~~~~w~~~~ 331 (381)
+....+|.++|
T Consensus 361 ~~~P~~~~~~~~~ 373 (382)
T PTZ00210 361 PPAPSKVMWLNSN 373 (382)
T ss_pred CCCCcceEEecCC
Confidence 33778898888
No 6
>KOG2288|consensus
Probab=100.00 E-value=1.8e-34 Score=269.39 Aligned_cols=194 Identities=24% Similarity=0.344 Sum_probs=177.1
Q ss_pred cEEEEEECCCCCHHHHHHHHHHhcc------------CceEEEEecCC--ChhhHHHHHHHHhhCCCEEEec-ccCCCCc
Q psy14358 86 VYLVLIHSAPYNYDKRRLIRNTWGT------------RVSVYFFIGET--DPSNQTRLDIESETYHDIVQGR-FWDSYRN 150 (381)
Q Consensus 86 ~Lli~V~S~p~~~~rR~aIR~TWg~------------~v~~~FvlG~~--~~~~~~~L~~E~~~~~DII~~d-f~DsY~N 150 (381)
.++|+|.|++++.+||+.+|+||+. .+..+|++|+. +.....+|++|+++|+|.+.+| ..|+|.+
T Consensus 12 l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~~~g~~~~r~ie~E~~~~~DfllLd~h~E~Y~~ 91 (274)
T KOG2288|consen 12 LLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTATLGASLDRALEEENAQHGDFLLLDRHEEAYEE 91 (274)
T ss_pred EEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEeccCCccHHHHHHHHHHHHhcCCeEeechhHHHHHH
Confidence 7789999999999999999999998 67899999995 7888999999999999999999 9999999
Q ss_pred hhHHHHHHHHHHHHhCCCccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecCCcceeccCCcccccccccc
Q psy14358 151 LTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLPVLRTYRSKWRVSFSEYR 230 (381)
Q Consensus 151 Lt~Ktl~~lkw~~~~cp~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~~~~R~~~sKwyv~~~~yp 230 (381)
|+.||+.+|.++.+++ +++|++|+|||+|||+..|...|..... .+++|+|++ .+.+++-.+++||+.|++-+.
T Consensus 92 Ls~Kt~~~f~~A~~~~-daeFyvKvDDDv~v~l~~L~~~la~~r~---~pr~YiGcm--ksg~v~~~~~~kw~EpeWkfg 165 (274)
T KOG2288|consen 92 LSAKTKAFFSAAVAHW-DAEFYVKVDDDVYVRLARLGTLLARERS---HPRLYIGCM--KSGPVLTQPGGKWYEPEWKFG 165 (274)
T ss_pred HHHHHHHHHHHHHHhc-cceEEEEccccceecHHHHHHHHHhhcc---CCceEEEEe--cCCccccCCCCcccChhhhcC
Confidence 9999999999999999 9999999999999999999999988753 478999986 667777888999999995554
Q ss_pred CC-CCCCccccceEeeCHHHHHHHHHHhccCCCCCCccchhhHHhhHHhCCCceeecC
Q psy14358 231 DH-FYPPHCHGNALLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFS 287 (381)
Q Consensus 231 ~~-~yP~Y~~G~gYvLS~d~a~~l~~~~~~~~~~~~~EDV~vTGi~l~~~gi~~~~~~ 287 (381)
.. .|-+|+.|++|+||+|+|..|..+.+. ...+..|||.+ |.|+--++|+++|.+
T Consensus 166 ~~g~YfrhA~G~~YvlS~dLa~yi~in~~l-L~~y~nEDVSl-GaW~~gldV~h~dd~ 221 (274)
T KOG2288|consen 166 DNGNYFRHATGGGYVLSKDLATYISINRQL-LHKYANEDVSL-GAWMIGLDVEHVDDP 221 (274)
T ss_pred cccccchhccCceEEeeHHHHHHHHHhHHH-HHhhccCCccc-ceeeeeeeeeEecCC
Confidence 32 299999999999999999999999988 88999999999 999988888888876
No 7
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.81 E-value=2.5e-19 Score=171.50 Aligned_cols=209 Identities=15% Similarity=0.179 Sum_probs=110.5
Q ss_pred cEEEEEECCCCCHH-HHHHHHHHhcc-CceEEEE-ecCCChhhHHHHHHHHhhCCCEEEecccCCCCchhHHHHHHHHHH
Q psy14358 86 VYLVLIHSAPYNYD-KRRLIRNTWGT-RVSVYFF-IGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWV 162 (381)
Q Consensus 86 ~Lli~V~S~p~~~~-rR~aIR~TWg~-~v~~~Fv-lG~~~~~~~~~L~~E~~~~~DII~~df~DsY~NLt~Ktl~~lkw~ 162 (381)
+++|+|+|++++.+ |-.+|++||++ .-..+|+ ....+..+.. + .-.+++..+..+++...+++.++...+-
T Consensus 7 dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~~~~ifsd~~d~~l~~----~--~~~~l~~~~~~~~~~~~~~~~~~~~~y~ 80 (252)
T PF02434_consen 7 DIFIAVKTTKKFHKTRAPAIKQTWAKRCNKQTFIFSDAEDPSLPT----V--TGVHLVNPNCDAGHCRKTLSCKMAYEYD 80 (252)
T ss_dssp GEEEEEE--GGGTTTTHHHHHHTGGGGSGGGEEEEESS--HHHHH----H--HGGGEEE-------------HHHHHHHH
T ss_pred cEEEEEEeCHHHHHHHHHHHHHHHHhhcCCceEEecCcccccccc----c--cccccccCCCcchhhHHHHHHHHHHHHH
Confidence 78999999997665 45799999999 3334554 4433443322 2 3456777777766665566666666654
Q ss_pred HHhCCCccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecCCcceeccCCccccccccccCCCCCCcc-ccc
Q psy14358 163 VYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLPVLRTYRSKWRVSFSEYRDHFYPPHC-HGN 241 (381)
Q Consensus 163 ~~~cp~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~~~~R~~~sKwyv~~~~yp~~~yP~Y~-~G~ 241 (381)
...-++++|++++|||+||++++|+++|...++ .+++|+|.. ....+ ..... +. ....-+...| .|+ +|+
T Consensus 81 ~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~---~~~~yiG~~-~~~~~-~~~~~-~~--~~~~~~~~~~-~f~~GGa 151 (252)
T PF02434_consen 81 HFLNSDKDWFCFADDDTYVNVENLRRLLSKYDP---SEPIYIGRP-SGDRP-IEIIH-RF--NPNKSKDSGF-WFATGGA 151 (252)
T ss_dssp HHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-T---TS--EEE-E-E---------------------------EE-GGG
T ss_pred hhhcCCceEEEEEeCCceecHHHHHHHHhhCCC---ccCEEeeee-ccCcc-ceeec-cc--cccccCcCce-EeeCCCe
Confidence 444468999999999999999999999999875 688999987 32211 11100 00 0000001122 454 789
Q ss_pred eEeeCHHHHHHHHHHhcc-CCC-----CCCccchhhHHhhHHh-CCCceeecCCCCCCCCCe------eeecCceeEEec
Q psy14358 242 ALLYSPDVVFKLYQHLQT-DQE-----YFWVDDVFITGIVFSK-LNLTHAKFSWWPGHDEPV------VILYSKMDLQHN 308 (381)
Q Consensus 242 gYvLS~d~a~~l~~~~~~-~~~-----~~~~EDV~vTGi~l~~-~gi~~~~~~~f~~~~~~~------~~~~~~~i~~H~ 308 (381)
||+|||.+++++...... ... .-..||+.| |.|++. +||+.++.+.||.+.... ....+-.+++|+
T Consensus 152 G~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~l-G~ci~~~lgv~lt~s~~fhs~~~~l~~~~~~~l~~q~~~s~~~ 230 (252)
T PF02434_consen 152 GYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTL-GYCIENLLGVPLTHSPLFHSHLENLQDYNPETLHRQVPISYHK 230 (252)
T ss_dssp -EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHH-HHHHHHTT---EEE-TT---SSS-GGG--TTTGGG-SEEE-EE
T ss_pred eHHHhHHHHHHHhhhcccccccCCcCCCCCcccChh-hhhHHhcCCcceeechhhcccCcccccCCHHHhccCCCeecCC
Confidence 999999999999654432 011 234799999 999988 999999999999987552 123334677777
Q ss_pred cC
Q psy14358 309 LS 310 (381)
Q Consensus 309 ~s 310 (381)
..
T Consensus 231 ~~ 232 (252)
T PF02434_consen 231 FE 232 (252)
T ss_dssp ET
T ss_pred Cc
Confidence 64
No 8
>KOG2246|consensus
Probab=99.69 E-value=9.1e-17 Score=160.92 Aligned_cols=165 Identities=18% Similarity=0.235 Sum_probs=128.6
Q ss_pred cEEEEEECCCCCHHHH-HHHHHHhcc-CceEEEEe---cCCChhhHHHHHHHHhhCCCEEEecccCCCCchhHHHHHHHH
Q psy14358 86 VYLVLIHSAPYNYDKR-RLIRNTWGT-RVSVYFFI---GETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFK 160 (381)
Q Consensus 86 ~Lli~V~S~p~~~~rR-~aIR~TWg~-~v~~~Fvl---G~~~~~~~~~L~~E~~~~~DII~~df~DsY~NLt~Ktl~~lk 160 (381)
.+++.|.|.+.+...| ..+-+||++ +-+..|+- ++.+.. +. .|..+..|+|+++..||..+++
T Consensus 92 ~v~cwv~t~~~~~~~~~~~v~~TW~~rc~~~~f~s~~~s~~~~~-----------f~-~v~~~~~~g~~~~~~ktr~~~~ 159 (364)
T KOG2246|consen 92 RVLCWVLTSPMRHVTRADAVKETWLKRCDKGIFFSPTLSKDDSR-----------FP-TVYYNLPDGYRSLWRKTRIAFK 159 (364)
T ss_pred eEEEEEEecCcCceeehhhhhcccccccCcceecCccCCCCCCc-----------Cc-eeeccCCcchHHHHHHHHHHHH
Confidence 8899999998766655 599999999 44555654 333221 11 2478899999999999999999
Q ss_pred HHHHhC-CCccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecCCcceeccCCccccccccccCCCCCCc-c
Q psy14358 161 WVVYNC-PHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLPVLRTYRSKWRVSFSEYRDHFYPPH-C 238 (381)
Q Consensus 161 w~~~~c-p~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~~~~R~~~sKwyv~~~~yp~~~yP~Y-~ 238 (381)
++.++. .+++|++|+|||||+.++||+.+|...++ .++.|+|.. ... +.- +. | -
T Consensus 160 yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp---~~p~YiG~~-~~~-----------~~~------~~---y~~ 215 (364)
T KOG2246|consen 160 YVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDP---EKPVYLGYR-SKS-----------YFQ------NG---YSS 215 (364)
T ss_pred HHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCC---CCcEEeccc-ccc-----------ccc------cc---ccc
Confidence 998655 68999999999999999999999999985 788999986 210 000 11 3 2
Q ss_pred ccceEeeCHHHHHHHHHHhcc---CCCCC---CccchhhHHhhHHhCCCceeecC
Q psy14358 239 HGNALLYSPDVVFKLYQHLQT---DQEYF---WVDDVFITGIVFSKLNLTHAKFS 287 (381)
Q Consensus 239 ~G~gYvLS~d~a~~l~~~~~~---~~~~~---~~EDV~vTGi~l~~~gi~~~~~~ 287 (381)
+|+||++|+.+.+.+++.... .++.- ..||+.| |.|++.+||.+.+..
T Consensus 216 g~ag~~ls~aa~~~la~~l~~~~~~C~~~~~~~~eD~~i-~~Cl~~~GV~~~d~~ 269 (364)
T KOG2246|consen 216 GGAGYVLSFAALRRLAERLLNNEDKCPQRYPSYGEDRRI-GRCLAEVGVPATDER 269 (364)
T ss_pred CCCCcceeHHHHHHHHHHHhcchhhcccccCCchhHHHH-HHHHHHhCCCccCch
Confidence 799999999999998887644 13322 4899999 999999999998853
No 9
>PLN03153 hypothetical protein; Provisional
Probab=99.34 E-value=4.8e-11 Score=122.72 Aligned_cols=195 Identities=13% Similarity=0.147 Sum_probs=124.9
Q ss_pred cEEEEEECCCCCH-HHHHHHHHHhcc-Cce-EEEEecCCChhhHHHHHHHHhhCCCE--EEecccCC---CC---chhHH
Q psy14358 86 VYLVLIHSAPYNY-DKRRLIRNTWGT-RVS-VYFFIGETDPSNQTRLDIESETYHDI--VQGRFWDS---YR---NLTYK 154 (381)
Q Consensus 86 ~Lli~V~S~p~~~-~rR~aIR~TWg~-~v~-~~FvlG~~~~~~~~~L~~E~~~~~DI--I~~df~Ds---Y~---NLt~K 154 (381)
.++++|.++.+.. +|+..|+.+|+. .++ .+|+....... .| -.++ +.+.-..+ |. +....
T Consensus 123 hIvF~I~~s~~~w~~R~~yik~wW~p~~~rg~v~ld~~~~~~------~~---~~~~P~i~is~d~s~f~y~~~~Gh~sa 193 (537)
T PLN03153 123 HIMFGIAGSSQLWKRRKELVRLWWRPNQMRGHVWLEEQVSPE------EG---DDSLPPIMVSEDTSRFRYTNPTGHPSG 193 (537)
T ss_pred cEEEEEEEchhhhhhhhhhhhhhcCcccceeEEEecccCCCC------CC---cCCCCCEEeCCCcccccccCCCCcHHH
Confidence 7888998887655 566899999998 444 44543332110 00 0111 11111111 22 22221
Q ss_pred -HH--HHHHHHHHhCCCccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecCCcceeccCCccccccccccC
Q psy14358 155 -HT--MVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLPVLRTYRSKWRVSFSEYRD 231 (381)
Q Consensus 155 -tl--~~lkw~~~~cp~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~~~~R~~~sKwyv~~~~yp~ 231 (381)
-+ +..+-+..+-|+++|++++|||||+.++||++.|...++ .++.|+|.. ...... .
T Consensus 194 ~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDp---tkp~YIGs~-Se~~~q----------------n 253 (537)
T PLN03153 194 LRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDP---SEMVYVGGP-SESHSA----------------N 253 (537)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCC---CCCEEeccc-cccccc----------------c
Confidence 11 334444455799999999999999999999999999875 788999986 211100 0
Q ss_pred CCCC-Cc-cccceEeeCHHHHHHHHHHhccCC----CCCCccchhhHHhhHHhCCCceeecCCCCCCCC-----Ce-eee
Q psy14358 232 HFYP-PH-CHGNALLYSPDVVFKLYQHLQTDQ----EYFWVDDVFITGIVFSKLNLTHAKFSWWPGHDE-----PV-VIL 299 (381)
Q Consensus 232 ~~yP-~Y-~~G~gYvLS~d~a~~l~~~~~~~~----~~~~~EDV~vTGi~l~~~gi~~~~~~~f~~~~~-----~~-~~~ 299 (381)
..+. .| -+|+||+||+.++++|...-.. + +...-+|..| |.|+..+||..++.++||...- ++ ...
T Consensus 254 ~~f~~~fA~GGAG~~LSrPLae~L~~~~d~-C~~rY~~~~~gD~rL-~~CL~elGV~LT~~~gfhQ~D~~Gd~~G~les~ 331 (537)
T PLN03153 254 SYFSHNMAFGGGGIAISYPLAEALSRILDD-CLDRYPKLYGSDDRL-HACITELGVPLSREPGFHQWDIRGNAHGLLSSH 331 (537)
T ss_pred cccccccccCCceEEEcHHHHHHHHHHhhh-hhhhcccCCCcHHHH-HHHHHHcCCCceecCCccccccCCCcchHhhcC
Confidence 0111 23 3899999999999998876433 2 2345688889 9999999999999999987641 22 111
Q ss_pred -cCceeEEeccCH
Q psy14358 300 -YSKMDLQHNLSQ 311 (381)
Q Consensus 300 -~~~~i~~H~~sp 311 (381)
..-.+++||..-
T Consensus 332 p~~P~vSlHH~~~ 344 (537)
T PLN03153 332 PIAPFVSIHHVEA 344 (537)
T ss_pred CCCCceeeeeccc
Confidence 123578887764
No 10
>KOG3708|consensus
Probab=96.62 E-value=0.0064 Score=63.11 Aligned_cols=154 Identities=15% Similarity=0.172 Sum_probs=103.8
Q ss_pred cEEEEEECCCCCHHHHHHHHHHhccC-ceEEEEecCCChhhHHHHHHHHhhCCCEEEecccCCCC-chhHHHHHHHHHHH
Q psy14358 86 VYLVLIHSAPYNYDKRRLIRNTWGTR-VSVYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYR-NLTYKHTMVFKWVV 163 (381)
Q Consensus 86 ~Lli~V~S~p~~~~rR~aIR~TWg~~-v~~~FvlG~~~~~~~~~L~~E~~~~~DII~~df~DsY~-NLt~Ktl~~lkw~~ 163 (381)
.++++|+|. ..---+|-.|=+.. -++.|+.+.+.-. .|.-|.....-|. +=....-+.++++.
T Consensus 27 rl~~aVmte---~tlA~a~NrT~ahhvprv~~F~~~~~i~------------~~~a~~~~vs~~d~r~~~~~s~vl~~l~ 91 (681)
T KOG3708|consen 27 RLMAAVMTE---STLALAINRTLAHHVPRVHLFADSSRID------------NDLAQLTNVSPYDLRGQKTHSMVLGLLF 91 (681)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHhhcceeEEeecccccc------------ccHhhccccCccccCccccHHHHHHHHH
Confidence 788888882 25667888888883 3555666665111 1111111111222 22334557788888
Q ss_pred HhC-CCccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecCCcceeccCCccccccccccCCCCCCcc-ccc
Q psy14358 164 YNC-PHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLPVLRTYRSKWRVSFSEYRDHFYPPHC-HGN 241 (381)
Q Consensus 164 ~~c-p~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~~~~R~~~sKwyv~~~~yp~~~yP~Y~-~G~ 241 (381)
+++ .+++|++-+-||+|||.+.|++.+...+. ..++|+|.-...++ +. | .|.
T Consensus 92 ~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsi---n~dlymGEe~~~gs-------------------~r----C~l~~ 145 (681)
T KOG3708|consen 92 NMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSI---NEDLYMGEEAEDGS-------------------GR----CRLDT 145 (681)
T ss_pred HhhccccceEEEecCcceecHHHHHHHHhhccc---ccccccchhhhCcc-------------------Cc----ccccc
Confidence 877 47999999999999999999999998875 67899996411111 11 5 589
Q ss_pred eEeeCHHHHHHHHHHhccCCC---CCCccchhhHHhhHH-hCCCc
Q psy14358 242 ALLYSPDVVFKLYQHLQTDQE---YFWVDDVFITGIVFS-KLNLT 282 (381)
Q Consensus 242 gYvLS~d~a~~l~~~~~~~~~---~~~~EDV~vTGi~l~-~~gi~ 282 (381)
||+||+.++.++-.+-.. +. .-.=.|+.+ |-|.. ..|+.
T Consensus 146 G~LLS~s~l~~lrnnle~-C~~~~lsad~d~~l-grCi~~At~v~ 188 (681)
T KOG3708|consen 146 GMLLSQSLLHALRNNLEG-CRNDILSADPDEWL-GRCIQDATGVG 188 (681)
T ss_pred ceeecHHHHHHHHhhHHH-hhcccccCCcHHHH-HHHHHHhhcCC
Confidence 999999999999887655 33 234567999 99984 44554
No 11
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=96.28 E-value=0.056 Score=49.22 Aligned_cols=97 Identities=15% Similarity=0.231 Sum_probs=60.3
Q ss_pred EEEECCCCCHHHHHHHHHHhcc-CceEEEEecCCChhhHH-HHHHHHhhCCCEE-----EecccCCCCchhHHHHHHHHH
Q psy14358 89 VLIHSAPYNYDKRRLIRNTWGT-RVSVYFFIGETDPSNQT-RLDIESETYHDIV-----QGRFWDSYRNLTYKHTMVFKW 161 (381)
Q Consensus 89 i~V~S~p~~~~rR~aIR~TWg~-~v~~~FvlG~~~~~~~~-~L~~E~~~~~DII-----~~df~DsY~NLt~Ktl~~lkw 161 (381)
|.|.|-+...+||+.+.+.... .+..-|+-|..+..... .+.. .+..-. .-.+.-+...=++-++..++-
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~~~~~e~~~Avdg~~l~~~~~~~---~~~~~~~~~~~~~~lt~gEiGC~lSH~~~w~~ 80 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKLGINFEFFDAVDGRDLSEDELFR---RYDPELFKKRYGRPLTPGEIGCALSHIKAWQR 80 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHcCCceEEEEeecccccchHHHHH---HhhhhhhhccccccCCcceEeehhhHHHHHHH
Confidence 5677888889999999988776 66666766665222221 1111 111111 112233334446778888888
Q ss_pred HHHhCCCccEEEEeCCceeeeHHHHHHHHH
Q psy14358 162 VVYNCPHVKYVFKLDDDVFMNVIQLDELLT 191 (381)
Q Consensus 162 ~~~~cp~a~fvlK~DDD~fvnv~~L~~~L~ 191 (381)
+.+. +.++++-..||+.++.+ +.+.|.
T Consensus 81 ~v~~--~~~~~lIlEDDv~~~~~-f~~~l~ 107 (200)
T PF01755_consen 81 IVDS--GLEYALILEDDVIFDPD-FKEFLE 107 (200)
T ss_pred HHHc--CCCeEEEEecccccccc-HHHHHH
Confidence 8765 68999999999999855 444443
No 12
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=95.87 E-value=0.34 Score=44.15 Aligned_cols=186 Identities=15% Similarity=0.128 Sum_probs=87.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHhcc---CceEEEEecCCChhhHHHHHHHHhhCCCE--EEecccCCCCch--hHHHHHHH
Q psy14358 87 YLVLIHSAPYNYDKRRLIRNTWGT---RVSVYFFIGETDPSNQTRLDIESETYHDI--VQGRFWDSYRNL--TYKHTMVF 159 (381)
Q Consensus 87 Lli~V~S~p~~~~rR~aIR~TWg~---~v~~~FvlG~~~~~~~~~L~~E~~~~~DI--I~~df~DsY~NL--t~Ktl~~l 159 (381)
+.|+|++..+...-++.++.--.. .+.++.+...++.+..+.+++-.+.+..+ -.+.-. .|. +.|. ..+
T Consensus 3 v~Vvip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~---~~~g~~~k~-~a~ 78 (228)
T PF13641_consen 3 VSVVIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRP---RNPGPGGKA-RAL 78 (228)
T ss_dssp EEEE--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE-------HHHHHHH-HHH
T ss_pred EEEEEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecC---CCCCcchHH-HHH
Confidence 456777766544445555554433 56666655444444445555555566553 222111 223 2343 355
Q ss_pred HHHHHhCCCccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecCCcceeccCC-----ccccccccccCCCC
Q psy14358 160 KWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLPVLRTYRS-----KWRVSFSEYRDHFY 234 (381)
Q Consensus 160 kw~~~~cp~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~~~~R~~~s-----Kwyv~~~~yp~~~y 234 (381)
+++.++. +.+|++..|||+.+..+-|.+.+..... ++-....|..........-.... .|+...... ....
T Consensus 79 n~~~~~~-~~d~i~~lD~D~~~~p~~l~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 154 (228)
T PF13641_consen 79 NEALAAA-RGDYILFLDDDTVLDPDWLERLLAAFAD--PGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLRFRSG-RRAL 154 (228)
T ss_dssp HHHHHH----SEEEEE-SSEEE-CHHHHHHHHHHHB--SS--EEEEEEEETTCCCEEEE-TT--S-EETTTS-TT--B--
T ss_pred HHHHHhc-CCCEEEEECCCcEECHHHHHHHHHHHHh--CCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhhhhhh-hccc
Confidence 7777777 6999999999999988877776665511 13334444431111000000001 111100000 0111
Q ss_pred -CCccccceEeeCHHHHHHHHHHhccCCCCCCccchhhHHhhHHhCCCceee
Q psy14358 235 -PPHCHGNALLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAK 285 (381)
Q Consensus 235 -P~Y~~G~gYvLS~d~a~~l~~~~~~~~~~~~~EDV~vTGi~l~~~gi~~~~ 285 (381)
..++.|++.++.+++++++-.- .+....||..+ +.-+.+.|.+...
T Consensus 155 ~~~~~~G~~~~~rr~~~~~~g~f----d~~~~~eD~~l-~~r~~~~G~~~~~ 201 (228)
T PF13641_consen 155 GVAFLSGSGMLFRRSALEEVGGF----DPFILGEDFDL-CLRLRAAGWRIVY 201 (228)
T ss_dssp --S-B--TEEEEEHHHHHHH-S------SSSSSHHHHH-HHHHHHTT--EEE
T ss_pred ceeeccCcEEEEEHHHHHHhCCC----CCCCcccHHHH-HHHHHHCCCcEEE
Confidence 2456899999999999888621 22455599999 8888777776553
No 13
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.76 E-value=0.81 Score=38.75 Aligned_cols=84 Identities=18% Similarity=0.191 Sum_probs=56.5
Q ss_pred CccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCce-EEEeeeecCCcceeccCCccccccccccCCCCCCccccceEeeC
Q psy14358 168 HVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNL-LMCPIVWEKLPVLRTYRSKWRVSFSEYRDHFYPPHCHGNALLYS 246 (381)
Q Consensus 168 ~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l-~~G~~~~~~~~~~R~~~sKwyv~~~~yp~~~yP~Y~~G~gYvLS 246 (381)
+.+|++..|||..+..+.+...++.... .+.. .++.. +.|++.+++
T Consensus 74 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~---~~~~~~~~~~------------------------------~~~~~~~~~ 120 (166)
T cd04186 74 KGDYVLLLNPDTVVEPGALLELLDAAEQ---DPDVGIVGPK------------------------------VSGAFLLVR 120 (166)
T ss_pred CCCEEEEECCCcEECccHHHHHHHHHHh---CCCceEEEcc------------------------------CceeeEeee
Confidence 7999999999999998888777764321 1121 11110 689999999
Q ss_pred HHHHHHHHHHhccCCCCCCccchhhHHhhHHhCCCceeecC
Q psy14358 247 PDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFS 287 (381)
Q Consensus 247 ~d~a~~l~~~~~~~~~~~~~EDV~vTGi~l~~~gi~~~~~~ 287 (381)
+++++.+-..... . ....||..+ ..-+...|.+....+
T Consensus 121 ~~~~~~~~~~~~~-~-~~~~eD~~~-~~~~~~~g~~i~~~~ 158 (166)
T cd04186 121 REVFEEVGGFDED-F-FLYYEDVDL-CLRARLAGYRVLYVP 158 (166)
T ss_pred HHHHHHcCCCChh-h-hccccHHHH-HHHHHHcCCeEEEcc
Confidence 9998876432222 1 126699998 776666677665543
No 14
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=94.30 E-value=0.48 Score=40.49 Aligned_cols=115 Identities=14% Similarity=0.143 Sum_probs=73.9
Q ss_pred EEEECCCCCHHHHHHHHHHhcc-CceEEEEecCCChhhH-HHHHHHHhhCCC-EEEecccCCCCchhHHHHHHHHHHHHh
Q psy14358 89 VLIHSAPYNYDKRRLIRNTWGT-RVSVYFFIGETDPSNQ-TRLDIESETYHD-IVQGRFWDSYRNLTYKHTMVFKWVVYN 165 (381)
Q Consensus 89 i~V~S~p~~~~rR~aIR~TWg~-~v~~~FvlG~~~~~~~-~~L~~E~~~~~D-II~~df~DsY~NLt~Ktl~~lkw~~~~ 165 (381)
+.|.|-+...+||+.+++.-.. .+..-|+-|....+.. ..+......... ....++.-+...-.+-++..++-+.+.
T Consensus 2 i~vInL~~~~~Rr~~~~~~~~~~~~~~~~~~Avd~~~~~~~~~~~~~~~~~~~~~~~~l~~gEiGC~lSH~~~w~~~~~~ 81 (128)
T cd06532 2 IFVINLDRSTDRRERMEAQLAALGLDFEFFDAVDGKDLSEEELAALYDALFLPRYGRPLTPGEIGCFLSHYKLWQKIVES 81 (128)
T ss_pred EEEEECCCCHHHHHHHHHHHHHcCCCeEEEeccccccCCHHHHHHHhHHHhhhhcCCCCChhhHHHHHHHHHHHHHHHHc
Confidence 4567778888999999987666 6677777776622221 122221110000 111223334445567777788777764
Q ss_pred CCCccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecCCcceeccCCccccccccccCCCCCCccccceEee
Q psy14358 166 CPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLPVLRTYRSKWRVSFSEYRDHFYPPHCHGNALLY 245 (381)
Q Consensus 166 cp~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~~~~R~~~sKwyv~~~~yp~~~yP~Y~~G~gYvL 245 (381)
+.++.+-..||+.+..+ +..||++
T Consensus 82 --~~~~alIlEDDv~~~~~------------------------------------------------------~~~~Y~v 105 (128)
T cd06532 82 --NLEYALILEDDAILDPD------------------------------------------------------GTAGYLV 105 (128)
T ss_pred --CCCeEEEEccCcEECCC------------------------------------------------------CceEEEe
Confidence 57889999999875433 5679999
Q ss_pred CHHHHHHHHHHhcc
Q psy14358 246 SPDVVFKLYQHLQT 259 (381)
Q Consensus 246 S~d~a~~l~~~~~~ 259 (381)
|++.|+++++....
T Consensus 106 s~~~A~~ll~~~~~ 119 (128)
T cd06532 106 SRKGAKKLLAALEP 119 (128)
T ss_pred CHHHHHHHHHhCCC
Confidence 99999999987754
No 15
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=94.29 E-value=2.3 Score=38.09 Aligned_cols=142 Identities=10% Similarity=0.069 Sum_probs=82.7
Q ss_pred HHHhccCceEEEEecCCChhhHHHHHHHHhhCC--CEEEecccCCCCchhHHHHHHHHHHHHhCCCccEEEEeCCceeee
Q psy14358 105 RNTWGTRVSVYFFIGETDPSNQTRLDIESETYH--DIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMN 182 (381)
Q Consensus 105 R~TWg~~v~~~FvlG~~~~~~~~~L~~E~~~~~--DII~~df~DsY~NLt~Ktl~~lkw~~~~cp~a~fvlK~DDD~fvn 182 (381)
.+++. ...++++...++....+.+++-...+. ++........ .....|.- .+..+.+++ +.+|++..|+|+.+.
T Consensus 25 ~q~~~-~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~-~~n~g~~~a-~~d~i~~~D~D~~~~ 100 (196)
T cd02520 25 QQDYP-KYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEK-VGINPKVN-NLIKGYEEA-RYDILVISDSDISVP 100 (196)
T ss_pred hccCC-CeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCc-CCCCHhHH-HHHHHHHhC-CCCEEEEECCCceEC
Confidence 33443 477777776663333444554445554 3322211111 12223432 344555555 689999999999998
Q ss_pred HHHHHHHHHhcCCCCCCCceEEEeeeecCCcceeccCCccccccccccCCCCCCccccceEeeCHHHHHHHHHHhccCCC
Q psy14358 183 VIQLDELLTRTLSPHGTRNLLMCPIVWEKLPVLRTYRSKWRVSFSEYRDHFYPPHCHGNALLYSPDVVFKLYQHLQTDQE 262 (381)
Q Consensus 183 v~~L~~~L~~~~~~~~~~~l~~G~~~~~~~~~~R~~~sKwyv~~~~yp~~~yP~Y~~G~gYvLS~d~a~~l~~~~~~~~~ 262 (381)
.+-|.+.+..... ++ +|.+ ... ++.|++.++.+++.+++-.... ..
T Consensus 101 ~~~l~~l~~~~~~----~~--~~~v-~~~-------------------------~~~g~~~~~r~~~~~~~ggf~~--~~ 146 (196)
T cd02520 101 PDYLRRMVAPLMD----PG--VGLV-TCL-------------------------CAFGKSMALRREVLDAIGGFEA--FA 146 (196)
T ss_pred hhHHHHHHHHhhC----CC--CCeE-Eee-------------------------cccCceeeeEHHHHHhccChHH--Hh
Confidence 8777777765421 11 1222 100 5689999999999998753322 12
Q ss_pred CCCccchhhHHhhHHhCCCceee
Q psy14358 263 YFWVDDVFITGIVFSKLNLTHAK 285 (381)
Q Consensus 263 ~~~~EDV~vTGi~l~~~gi~~~~ 285 (381)
....||..+ +.-+...|.+...
T Consensus 147 ~~~~eD~~l-~~rl~~~G~~i~~ 168 (196)
T cd02520 147 DYLAEDYFL-GKLIWRLGYRVVL 168 (196)
T ss_pred HHHHHHHHH-HHHHHHcCCeEEE
Confidence 234699999 7877777766553
No 16
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=94.28 E-value=0.89 Score=45.82 Aligned_cols=188 Identities=11% Similarity=0.041 Sum_probs=98.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHhcc---CceEEEEecCCChhhHHHHHHHHhhCCC--EEEecccCCCCchhHHHHHHHHH
Q psy14358 87 YLVLIHSAPYNYDKRRLIRNTWGT---RVSVYFFIGETDPSNQTRLDIESETYHD--IVQGRFWDSYRNLTYKHTMVFKW 161 (381)
Q Consensus 87 Lli~V~S~p~~~~rR~aIR~TWg~---~v~~~FvlG~~~~~~~~~L~~E~~~~~D--II~~df~DsY~NLt~Ktl~~lkw 161 (381)
+-|+|++.-+...-.+.++.-=.+ ...++++.+.++....+.+++=.++|.+ |... ..+.-.+...|.-...+
T Consensus 43 VSViiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v-~~~~~~G~~~K~~~l~~- 120 (373)
T TIGR03472 43 VSVLKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLV-IDARRHGPNRKVSNLIN- 120 (373)
T ss_pred eEEEEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEE-ECCCCCCCChHHHHHHH-
Confidence 446666655433333334322222 4777777666633333333333345665 3222 11111223346544433
Q ss_pred HHHhCCCccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecCCcceeccCC--------cccccccccc-CC
Q psy14358 162 VVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLPVLRTYRS--------KWRVSFSEYR-DH 232 (381)
Q Consensus 162 ~~~~cp~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~~~~R~~~s--------Kwyv~~~~yp-~~ 232 (381)
+.+.+ +.++++..|+|+.+..+-|.+.+..... ++-.+..|.. .. .+..+..+ -++.|..... ..
T Consensus 121 ~~~~a-~ge~i~~~DaD~~~~p~~L~~lv~~~~~--~~v~~V~~~~-~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 194 (373)
T TIGR03472 121 MLPHA-RHDILVIADSDISVGPDYLRQVVAPLAD--PDVGLVTCLY-RG--RPVPGFWSRLGAMGINHNFLPSVMVARAL 194 (373)
T ss_pred HHHhc-cCCEEEEECCCCCcChhHHHHHHHHhcC--CCcceEeccc-cC--CCCCCHHHHHHHHHhhhhhhHHHHHHHhc
Confidence 44555 7999999999999988888777766532 1223333322 11 10000000 1122110000 00
Q ss_pred CCCCccccceEeeCHHHHHHHHHHhccCCCCCCccchhhHHhhHHhCCCceee
Q psy14358 233 FYPPHCHGNALLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAK 285 (381)
Q Consensus 233 ~yP~Y~~G~gYvLS~d~a~~l~~~~~~~~~~~~~EDV~vTGi~l~~~gi~~~~ 285 (381)
.-+.+|.|.++++.+++.+++--.... ...-.||+.+ |.-+.+.|.+..-
T Consensus 195 ~~~~~~~G~~~a~RR~~l~~iGGf~~~--~~~~~ED~~l-~~~i~~~G~~v~~ 244 (373)
T TIGR03472 195 GRARFCFGATMALRRATLEAIGGLAAL--AHHLADDYWL-GELVRALGLRVVL 244 (373)
T ss_pred cCCccccChhhheeHHHHHHcCChHHh--cccchHHHHH-HHHHHHcCCeEEe
Confidence 113568899999999999987644322 2223599999 8888888877653
No 17
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.20 E-value=1.9 Score=38.86 Aligned_cols=166 Identities=10% Similarity=0.024 Sum_probs=84.9
Q ss_pred HHHhcc-CceEEEEecCCChhhHHHHHHHHhhC--CCEEEecccCCCCchhHHHHHHHHHHHHhCCCccEEEEeCCceee
Q psy14358 105 RNTWGT-RVSVYFFIGETDPSNQTRLDIESETY--HDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFM 181 (381)
Q Consensus 105 R~TWg~-~v~~~FvlG~~~~~~~~~L~~E~~~~--~DII~~df~DsY~NLt~Ktl~~lkw~~~~cp~a~fvlK~DDD~fv 181 (381)
++|+.. .+.++.+-+.++....+.+. +.... ..+......+ -.|. .|. .++++..+++ +.+|++.+|+|..+
T Consensus 21 ~q~~~~~~~eiivvdd~s~d~t~~~~~-~~~~~~~~~v~~~~~~~-~~~~-g~~-~a~n~g~~~~-~~d~i~~~D~D~~~ 95 (229)
T cd04192 21 ALDYPKEKFEVILVDDHSTDGTVQILE-FAAAKPNFQLKILNNSR-VSIS-GKK-NALTTAIKAA-KGDWIVTTDADCVV 95 (229)
T ss_pred hCCCCCCceEEEEEcCCCCcChHHHHH-HHHhCCCcceEEeeccC-cccc-hhH-HHHHHHHHHh-cCCEEEEECCCccc
Confidence 334443 25565555544333334444 22233 3444454443 1222 233 3456666666 78999999999999
Q ss_pred eHHHHHHHHHhcCCCCCCCceEEEeeeecCCcc---eeccCCcccccc---ccccCCCCCCccccceEeeCHHHHHHHHH
Q psy14358 182 NVIQLDELLTRTLSPHGTRNLLMCPIVWEKLPV---LRTYRSKWRVSF---SEYRDHFYPPHCHGNALLYSPDVVFKLYQ 255 (381)
Q Consensus 182 nv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~~~---~R~~~sKwyv~~---~~yp~~~yP~Y~~G~gYvLS~d~a~~l~~ 255 (381)
..+-|.+.+..... .....+.|.. ...... .+-..-.+.... ........+..+.|++.++++++.+++--
T Consensus 96 ~~~~l~~l~~~~~~--~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~gg 172 (229)
T cd04192 96 PSNWLLTFVAFIQK--EQIGLVAGPV-IYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRKEAFFEVGG 172 (229)
T ss_pred CHHHHHHHHHHhhc--CCCcEEeeee-eecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceEEEEHHHHHHhcC
Confidence 88777777764432 1234455544 211000 000000000000 00112235566789999999999988753
Q ss_pred HhccCCCCCCccchhhHHhhHHhCCC
Q psy14358 256 HLQTDQEYFWVDDVFITGIVFSKLNL 281 (381)
Q Consensus 256 ~~~~~~~~~~~EDV~vTGi~l~~~gi 281 (381)
-.. ......||..+ +.-+...|.
T Consensus 173 f~~--~~~~~~eD~~~-~~~~~~~g~ 195 (229)
T cd04192 173 FEG--NDHIASGDDEL-LLAKVASKY 195 (229)
T ss_pred Ccc--ccccccCCHHH-HHHHHHhCC
Confidence 322 22355688887 665555555
No 18
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=93.91 E-value=3.1 Score=42.05 Aligned_cols=190 Identities=9% Similarity=0.053 Sum_probs=97.1
Q ss_pred cEEEEEECCCCCHHHHHHH----HHHhccCceEEEEecCCChhhHHHHHHHHhhCC---CEEEecccCCCCchhHHH---
Q psy14358 86 VYLVLIHSAPYNYDKRRLI----RNTWGTRVSVYFFIGETDPSNQTRLDIESETYH---DIVQGRFWDSYRNLTYKH--- 155 (381)
Q Consensus 86 ~Lli~V~S~p~~~~rR~aI----R~TWg~~v~~~FvlG~~~~~~~~~L~~E~~~~~---DII~~df~DsY~NLt~Kt--- 155 (381)
.+-|+|++.-+...-.+.+ .+++.....++++-+.+++...+.+++-.+++. .+......+.-.+-..|.
T Consensus 41 ~VSVIIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~ 120 (384)
T TIGR03469 41 AVVAVVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAV 120 (384)
T ss_pred CEEEEEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHH
Confidence 4556666665433333333 334432456666665552222222222223333 344333222222233453
Q ss_pred HHHHHHHHHhCCCccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecCCcceeccCCcccccc------ccc
Q psy14358 156 TMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLPVLRTYRSKWRVSF------SEY 229 (381)
Q Consensus 156 l~~lkw~~~~cp~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~~~~R~~~sKwyv~~------~~y 229 (381)
-.+++.+.+.+++.+|++.+|+|+.+..+.+.+.+..... .+..+ .+....... .+...+..++. ..+
T Consensus 121 n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~--~~~~~-vs~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 194 (384)
T TIGR03469 121 SQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARA--EGLDL-VSLMVRLRC---ESFWEKLLIPAFVFFFQKLY 194 (384)
T ss_pred HHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHh--CCCCE-EEecccccC---CCHHHHHHHHHHHHHHHHhc
Confidence 3356666666666899999999999998887777765421 12222 222201000 00001110010 001
Q ss_pred c------CCCCCCccccceEeeCHHHHHHHHHHhccCCCCCCccchhhHHhhHHhCCCcee
Q psy14358 230 R------DHFYPPHCHGNALLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHA 284 (381)
Q Consensus 230 p------~~~yP~Y~~G~gYvLS~d~a~~l~~~~~~~~~~~~~EDV~vTGi~l~~~gi~~~ 284 (381)
| .......+.|++.++++++.+++--.... . ....||+.+ +.-+++.|.+..
T Consensus 195 ~~~~~~~~~~~~~~~~G~~~lirr~~~~~vGGf~~~-~-~~~~ED~~L-~~r~~~~G~~v~ 252 (384)
T TIGR03469 195 PFRWVNDPRRRTAAAAGGCILIRREALERIGGIAAI-R-GALIDDCTL-AAAVKRSGGRIW 252 (384)
T ss_pred chhhhcCCCccceeecceEEEEEHHHHHHcCCHHHH-h-hCcccHHHH-HHHHHHcCCcEE
Confidence 1 01123446799999999999987443322 1 224799999 888887875544
No 19
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.79 E-value=2 Score=38.23 Aligned_cols=156 Identities=10% Similarity=0.065 Sum_probs=76.8
Q ss_pred CceEEEEecCCChhhHHHHHHHHhhCCC-EEEecccCCCCchhHHHHHHHHHHHHhCCCccEEEEeCCceeeeHHHHHHH
Q psy14358 111 RVSVYFFIGETDPSNQTRLDIESETYHD-IVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDEL 189 (381)
Q Consensus 111 ~v~~~FvlG~~~~~~~~~L~~E~~~~~D-II~~df~DsY~NLt~Ktl~~lkw~~~~cp~a~fvlK~DDD~fvnv~~L~~~ 189 (381)
.+.++++-..+.....+.+++-..+++. +....... -.+.... +......+ +.+|++..|+|..+..+.+.+.
T Consensus 27 ~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~-~~G~~~~----~n~g~~~~-~g~~v~~ld~Dd~~~~~~l~~~ 100 (214)
T cd04196 27 NDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGK-NLGVARN----FESLLQAA-DGDYVFFCDQDDIWLPDKLERL 100 (214)
T ss_pred CeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCC-CccHHHH----HHHHHHhC-CCCEEEEECCCcccChhHHHHH
Confidence 4666666544433333444444444432 33332222 2222222 22334444 7999999999999887777777
Q ss_pred HHh-cCCCCCCCceEEEeeee--cCCcceec-cC-CccccccccccCCCCCCccccceEeeCHHHHHHHHHHhccCCCCC
Q psy14358 190 LTR-TLSPHGTRNLLMCPIVW--EKLPVLRT-YR-SKWRVSFSEYRDHFYPPHCHGNALLYSPDVVFKLYQHLQTDQEYF 264 (381)
Q Consensus 190 L~~-~~~~~~~~~l~~G~~~~--~~~~~~R~-~~-sKwyv~~~~yp~~~yP~Y~~G~gYvLS~d~a~~l~~~~~~~~~~~ 264 (381)
+.. ... +...++.|.... ........ .. .....+...+........+.|++.++.+++++++...... ..
T Consensus 101 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~ 175 (214)
T cd04196 101 LKAFLKD--DKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSFNNLLFQNVVTGCTMAFNRELLELALPFPDA---DV 175 (214)
T ss_pred HHHHhcC--CCceEEecCcEEECCCCCCcccccccccccCCccCHHHHHHhCccCCceeeEEHHHHHhhcccccc---cc
Confidence 775 221 122333333211 11111100 00 0000000001111123566899999999999987643322 25
Q ss_pred CccchhhHHhhHHh
Q psy14358 265 WVDDVFITGIVFSK 278 (381)
Q Consensus 265 ~~EDV~vTGi~l~~ 278 (381)
..||..+ .+.+..
T Consensus 176 ~~~D~~~-~~~~~~ 188 (214)
T cd04196 176 IMHDWWL-ALLASA 188 (214)
T ss_pred ccchHHH-HHHHHH
Confidence 6799888 665554
No 20
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=93.25 E-value=4.3 Score=36.97 Aligned_cols=164 Identities=10% Similarity=-0.042 Sum_probs=83.3
Q ss_pred CceEEEEecCCChhhHHHHHHHHhhCCCEEEecccCCCCchhHHHHHHHHHHHHhCCCccEEEEeCCceeeeHHHHHHHH
Q psy14358 111 RVSVYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELL 190 (381)
Q Consensus 111 ~v~~~FvlG~~~~~~~~~L~~E~~~~~DII~~df~DsY~NLt~Ktl~~lkw~~~~cp~a~fvlK~DDD~fvnv~~L~~~L 190 (381)
...++.+-+.++.+..+.+++..+++..+....-.+ .+.. .+++.+.+.. +.+|++..|||..+...-|.+.+
T Consensus 31 ~~evivvd~~s~d~~~~~~~~~~~~~~~v~~i~~~~--~~~~----~a~N~g~~~a-~~d~v~~lD~D~~~~~~~l~~~~ 103 (249)
T cd02525 31 LIEIIVVDGGSTDGTREIVQEYAAKDPRIRLIDNPK--RIQS----AGLNIGIRNS-RGDIIIRVDAHAVYPKDYILELV 103 (249)
T ss_pred ccEEEEEeCCCCccHHHHHHHHHhcCCeEEEEeCCC--CCch----HHHHHHHHHh-CCCEEEEECCCccCCHHHHHHHH
Confidence 456666655554344455555444443344332221 1121 3456665554 78999999999999877777766
Q ss_pred HhcCCCCCCCceEEEeeeecCCcceec-----cCCccccccccccCCC--CCCccccceEeeCHHHHHHHHHHhccCCCC
Q psy14358 191 TRTLSPHGTRNLLMCPIVWEKLPVLRT-----YRSKWRVSFSEYRDHF--YPPHCHGNALLYSPDVVFKLYQHLQTDQEY 263 (381)
Q Consensus 191 ~~~~~~~~~~~l~~G~~~~~~~~~~R~-----~~sKwyv~~~~yp~~~--yP~Y~~G~gYvLS~d~a~~l~~~~~~~~~~ 263 (381)
..... .......|............ ..+.+......+.... .-.++.|++.++++++.+++.-. . ...
T Consensus 104 ~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~-~~~ 178 (249)
T cd02525 104 EALKR--TGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAYRGGAVKIGYVDTVHHGAYRREVFEKVGGF--D-ESL 178 (249)
T ss_pred HHHhc--CCCCEEecceecCCCChHHHHHHHHhhchhccCCccccccccccccccccccceEEHHHHHHhCCC--C-ccc
Confidence 54421 12233333331111111000 0000000000000000 01245788889999998776422 1 234
Q ss_pred CCccchhhHHhhHHhCCCceeecC
Q psy14358 264 FWVDDVFITGIVFSKLNLTHAKFS 287 (381)
Q Consensus 264 ~~~EDV~vTGi~l~~~gi~~~~~~ 287 (381)
...||..+ +.-+.+.|.+....+
T Consensus 179 ~~~eD~~l-~~r~~~~G~~~~~~~ 201 (249)
T cd02525 179 VRNEDAEL-NYRLRKAGYKIWLSP 201 (249)
T ss_pred CccchhHH-HHHHHHcCcEEEEcC
Confidence 45799999 777777777766543
No 21
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.21 E-value=4.8 Score=35.84 Aligned_cols=95 Identities=18% Similarity=0.110 Sum_probs=58.2
Q ss_pred HHHHHHHHHhCCCccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecCCcceeccCCccccccccccCCCCC
Q psy14358 156 TMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLPVLRTYRSKWRVSFSEYRDHFYP 235 (381)
Q Consensus 156 l~~lkw~~~~cp~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~~~~R~~~sKwyv~~~~yp~~~yP 235 (381)
-.+++++. ..+.+|++..|||..+..+.+.+.+..... +.-.+..|.. . ...+
T Consensus 69 n~~~~~a~--~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~--~~~~~~~~~~-~-------~~~~--------------- 121 (202)
T cd04185 69 YEGVRRAY--ELGYDWIWLMDDDAIPDPDALEKLLAYADK--DNPQFLAPLV-L-------DPDG--------------- 121 (202)
T ss_pred HHHHHHHh--ccCCCEEEEeCCCCCcChHHHHHHHHHHhc--CCceEeccee-E-------cCCC---------------
Confidence 34556665 347899999999999998776666655431 1222222222 1 1000
Q ss_pred CccccceEeeCHHHHHHHHHHhccCCCCCCccchhhHHhhHHhCCCce
Q psy14358 236 PHCHGNALLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTH 283 (381)
Q Consensus 236 ~Y~~G~gYvLS~d~a~~l~~~~~~~~~~~~~EDV~vTGi~l~~~gi~~ 283 (381)
.++|.++++++.+++--.. . .-....||+.+ +.-+...|...
T Consensus 122 ---~~~~~~~~~~~~~~~g~~~-~-~~~~~~eD~~~-~~r~~~~G~~i 163 (202)
T cd04185 122 ---SFVGVLISRRVVEKIGLPD-K-EFFIWGDDTEY-TLRASKAGPGI 163 (202)
T ss_pred ---ceEEEEEeHHHHHHhCCCC-h-hhhccchHHHH-HHHHHHcCCcE
Confidence 4567889999988763211 1 11245699999 88777777765
No 22
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.17 E-value=7.3 Score=33.85 Aligned_cols=123 Identities=8% Similarity=-0.091 Sum_probs=70.2
Q ss_pred HHHHHHHHhCCCccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecCCcceeccCCccccccccccCCCCCC
Q psy14358 157 MVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLPVLRTYRSKWRVSFSEYRDHFYPP 236 (381)
Q Consensus 157 ~~lkw~~~~cp~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~~~~R~~~sKwyv~~~~yp~~~yP~ 236 (381)
.+++.+.+++ +.+|++-.|+|..+..+.+...+...... +...+..|......... +. ..................
T Consensus 65 ~a~n~~~~~a-~~~~v~~ld~D~~~~~~~~~~~~~~~~~~-~~~~~v~g~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~ 140 (202)
T cd06433 65 DAMNKGIALA-TGDIIGFLNSDDTLLPGALLAVVAAFAEH-PEVDVVYGDVLLVDENG-RV-IGRRRPPPFLDKFLLYGM 140 (202)
T ss_pred HHHHHHHHHc-CCCEEEEeCCCcccCchHHHHHHHHHHhC-CCccEEEeeeEEEcCCC-Cc-ccCCCCcchhhhHHhhcC
Confidence 4456666666 68999999999999988888877433110 23455556541111000 00 011101111111122346
Q ss_pred ccccceEeeCHHHHHHHHHHhccCCCCCCccchhhHHhhHHhCCCceeecC
Q psy14358 237 HCHGNALLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFS 287 (381)
Q Consensus 237 Y~~G~gYvLS~d~a~~l~~~~~~~~~~~~~EDV~vTGi~l~~~gi~~~~~~ 287 (381)
++.|++.++++++.+.+-.-. ......||..+ .+-+...|......+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~f~---~~~~~~~D~~~-~~r~~~~g~~~~~~~ 187 (202)
T cd06433 141 PICHQATFFRRSLFEKYGGFD---ESYRIAADYDL-LLRLLLAGKIFKYLP 187 (202)
T ss_pred cccCcceEEEHHHHHHhCCCc---hhhCchhhHHH-HHHHHHcCCceEecc
Confidence 677888999999998875322 22334689888 666666777665443
No 23
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=92.06 E-value=1.7 Score=36.41 Aligned_cols=151 Identities=11% Similarity=0.078 Sum_probs=72.2
Q ss_pred CCCHHHH-HHHHHHhccCceEEEEecCCChhhHHHHHHHHhhCCCEEEecccCCCCchhHHHHHHHHHHHHhCCCccEEE
Q psy14358 95 PYNYDKR-RLIRNTWGTRVSVYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVF 173 (381)
Q Consensus 95 p~~~~rR-~aIR~TWg~~v~~~FvlG~~~~~~~~~L~~E~~~~~DII~~df~DsY~NLt~Ktl~~lkw~~~~cp~a~fvl 173 (381)
++...+- +.+++.-.....++++-..++.+..+.+++-.+....+......+.. ++. .++..+.++. +.+|++
T Consensus 10 ~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~~~~n~-g~~----~~~n~~~~~a-~~~~i~ 83 (169)
T PF00535_consen 10 AEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAESDPNIRYIRNPENL-GFS----AARNRGIKHA-KGEYIL 83 (169)
T ss_dssp TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEEHCCCS-HHH----HHHHHHHHH---SSEEE
T ss_pred HHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccccccccccccccccc-ccc----cccccccccc-ceeEEE
Confidence 3444432 34666622256665555555444444444444334455555554432 333 3334444444 566999
Q ss_pred EeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecC--CcceeccCC--c-ccccc--ccccCCCCCCccccceEeeC
Q psy14358 174 KLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEK--LPVLRTYRS--K-WRVSF--SEYRDHFYPPHCHGNALLYS 246 (381)
Q Consensus 174 K~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~--~~~~R~~~s--K-wyv~~--~~yp~~~yP~Y~~G~gYvLS 246 (381)
.+|||.++..+.|...+..... ......+|...... ......... . +.... .......--.++.|++.+++
T Consensus 84 ~ld~D~~~~~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 161 (169)
T PF00535_consen 84 FLDDDDIISPDWLEELVEALEK--NPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFR 161 (169)
T ss_dssp EEETTEEE-TTHHHHHHHHHHH--CTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEE
T ss_pred EeCCCceEcHHHHHHHHHHHHh--CCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEE
Confidence 9999999987755555544321 13345555541111 111111000 0 01100 11111223577889999999
Q ss_pred HHHHHHH
Q psy14358 247 PDVVFKL 253 (381)
Q Consensus 247 ~d~a~~l 253 (381)
+++.+++
T Consensus 162 r~~~~~~ 168 (169)
T PF00535_consen 162 RSVFEEI 168 (169)
T ss_dssp EHHHHHC
T ss_pred HHHHHhh
Confidence 9998764
No 24
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=91.55 E-value=6.5 Score=36.58 Aligned_cols=189 Identities=11% Similarity=0.043 Sum_probs=96.6
Q ss_pred cEEEEEECCCCCHHHHH---HHHHHhcc--CceEEEEecCCChhhHHHHHHHHhhCCC-EEEecccCCCCchhHHHHHHH
Q psy14358 86 VYLVLIHSAPYNYDKRR---LIRNTWGT--RVSVYFFIGETDPSNQTRLDIESETYHD-IVQGRFWDSYRNLTYKHTMVF 159 (381)
Q Consensus 86 ~Lli~V~S~p~~~~rR~---aIR~TWg~--~v~~~FvlG~~~~~~~~~L~~E~~~~~D-II~~df~DsY~NLt~Ktl~~l 159 (381)
.+-|+|++.-+...-.. .+++.-.. .+.++++-+.+.....+.+++-.+++++ .+..-....-.+.. .++
T Consensus 10 ~vsVvIp~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~----~a~ 85 (243)
T PLN02726 10 KYSIIVPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLG----TAY 85 (243)
T ss_pred eEEEEEccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHH----HHH
Confidence 45677776544332222 34433322 5667666655533344444444445553 22221111111222 244
Q ss_pred HHHHHhCCCccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecCCc-----ceeccCCcc--ccccccccCC
Q psy14358 160 KWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLP-----VLRTYRSKW--RVSFSEYRDH 232 (381)
Q Consensus 160 kw~~~~cp~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~~-----~~R~~~sKw--yv~~~~yp~~ 232 (381)
+.+.+.. +.+|++..|+|..+..+.|.+.+..... ....+..|........ ..|.-.++. .+..... ..
T Consensus 86 n~g~~~a-~g~~i~~lD~D~~~~~~~l~~l~~~~~~--~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-~~ 161 (243)
T PLN02726 86 IHGLKHA-SGDFVVIMDADLSHHPKYLPSFIKKQRE--TGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLAQTLL-WP 161 (243)
T ss_pred HHHHHHc-CCCEEEEEcCCCCCCHHHHHHHHHHHHh--cCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHHHHHh-CC
Confidence 4444444 6899999999999998888777765422 1345666653111110 011100100 0000111 11
Q ss_pred CCCCccccceEeeCHHHHHHHHHHhccCCCCCCccchhhHHhhHHhCCCceeecC
Q psy14358 233 FYPPHCHGNALLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFS 287 (381)
Q Consensus 233 ~yP~Y~~G~gYvLS~d~a~~l~~~~~~~~~~~~~EDV~vTGi~l~~~gi~~~~~~ 287 (381)
.-+.+.|++.++++++++.+...... . ...+|..+ .+-+.+.|.+....+
T Consensus 162 -~~~d~~g~~~~~rr~~~~~i~~~~~~-~--~~~~~~el-~~~~~~~g~~i~~vp 211 (243)
T PLN02726 162 -GVSDLTGSFRLYKRSALEDLVSSVVS-K--GYVFQMEI-IVRASRKGYRIEEVP 211 (243)
T ss_pred -CCCcCCCcccceeHHHHHHHHhhccC-C--CcEEehHH-HHHHHHcCCcEEEeC
Confidence 12346788889999999999754332 2 22346667 677777888877765
No 25
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=90.80 E-value=3.9 Score=34.05 Aligned_cols=137 Identities=10% Similarity=0.015 Sum_probs=65.2
Q ss_pred CceEEEEecCCChhhHHHHHHHHhhCCC-EEEecccCCCCchhHHHHHHHHHHHHhCCCccEEEEeCCceeeeHHHHHHH
Q psy14358 111 RVSVYFFIGETDPSNQTRLDIESETYHD-IVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDEL 189 (381)
Q Consensus 111 ~v~~~FvlG~~~~~~~~~L~~E~~~~~D-II~~df~DsY~NLt~Ktl~~lkw~~~~cp~a~fvlK~DDD~fvnv~~L~~~ 189 (381)
...++.+-..++....+.+.++...+.- ++.... +.-.++ -..++++.+.+ +.+|++..|+|..+....+.+.
T Consensus 26 ~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~-~~~~g~----~~~~n~~~~~~-~~~~i~~~D~D~~~~~~~l~~~ 99 (180)
T cd06423 26 KLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRD-KENGGK----AGALNAGLRHA-KGDIVVVLDADTILEPDALKRL 99 (180)
T ss_pred ceEEEEEeCCCccchHHHHHHHhccccceEEEEEe-cccCCc----hHHHHHHHHhc-CCCEEEEECCCCCcChHHHHHH
Confidence 3455454444443444445554444322 222222 211121 24556666666 8999999999999987766666
Q ss_pred HHhcCCCCCCCceEEEeeeecCCc--ceeccC-Ccccccc-cccc---CCCCCCccccceEeeCHHHHHHHH
Q psy14358 190 LTRTLSPHGTRNLLMCPIVWEKLP--VLRTYR-SKWRVSF-SEYR---DHFYPPHCHGNALLYSPDVVFKLY 254 (381)
Q Consensus 190 L~~~~~~~~~~~l~~G~~~~~~~~--~~R~~~-sKwyv~~-~~yp---~~~yP~Y~~G~gYvLS~d~a~~l~ 254 (381)
+...... +.-....|........ ...... .++.... ...+ .......+.|.++++++++.+++-
T Consensus 100 ~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g 170 (180)
T cd06423 100 VVPFFAD-PKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSALGGVLVLSGAFGAFRREALREVG 170 (180)
T ss_pred HHHhccC-CCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhheecceeecCchHHHHHHHHHHHhC
Confidence 4543210 1222233332111110 011000 0000000 0001 123456678999999999888754
No 26
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=90.74 E-value=7.1 Score=35.31 Aligned_cols=186 Identities=13% Similarity=0.066 Sum_probs=90.0
Q ss_pred EEEEECCCCCHH-HHHH----HHHHhcc-CceEEEEecCCChhhHHHHHHHHhhCCCEEEecccCCCCchhHHHHHHHHH
Q psy14358 88 LVLIHSAPYNYD-KRRL----IRNTWGT-RVSVYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKW 161 (381)
Q Consensus 88 li~V~S~p~~~~-rR~a----IR~TWg~-~v~~~FvlG~~~~~~~~~L~~E~~~~~DII~~df~DsY~NLt~Ktl~~lkw 161 (381)
-|+|++.-+..+ -++. ..+++.. .+.++++-..++....+.+++-...+ ++....... |.-.|.- .+..
T Consensus 4 sviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~-~~~~~~~~~---~~~~~~~-~~n~ 78 (234)
T cd06421 4 DVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVEY-GYRYLTRPD---NRHAKAG-NLNN 78 (234)
T ss_pred EEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhccc-CceEEEeCC---CCCCcHH-HHHH
Confidence 456666543322 2332 3344444 25666655444333333333322222 333332222 2222221 2344
Q ss_pred HHHhCCCccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecCC-cc---eecc--CCcccccccccc-CCCC
Q psy14358 162 VVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKL-PV---LRTY--RSKWRVSFSEYR-DHFY 234 (381)
Q Consensus 162 ~~~~cp~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~-~~---~R~~--~sKwyv~~~~yp-~~~y 234 (381)
+.++. +.+|++..|+|..+..+.|.+.+...... +.-....|....... .. .+.. ....+....... ....
T Consensus 79 ~~~~a-~~d~i~~lD~D~~~~~~~l~~l~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (234)
T cd06421 79 ALAHT-TGDFVAILDADHVPTPDFLRRTLGYFLDD-PKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWG 156 (234)
T ss_pred HHHhC-CCCEEEEEccccCcCccHHHHHHHHHhcC-CCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44444 78999999999999988777777654310 011122222101010 00 0000 000010000000 0112
Q ss_pred CCccccceEeeCHHHHHHHHHHhccCCCCCCccchhhHHhhHHhCCCceee
Q psy14358 235 PPHCHGNALLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAK 285 (381)
Q Consensus 235 P~Y~~G~gYvLS~d~a~~l~~~~~~~~~~~~~EDV~vTGi~l~~~gi~~~~ 285 (381)
..++.|++.++++++.+++-.- ......||..+ +.-+.+.|.+...
T Consensus 157 ~~~~~g~~~~~r~~~~~~ig~~----~~~~~~eD~~l-~~r~~~~g~~i~~ 202 (234)
T cd06421 157 AAFCCGSGAVVRREALDEIGGF----PTDSVTEDLAT-SLRLHAKGWRSVY 202 (234)
T ss_pred CceecCceeeEeHHHHHHhCCC----CccceeccHHH-HHHHHHcCceEEE
Confidence 4667899999999999886422 12344799999 8777777765543
No 27
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=90.72 E-value=14 Score=35.63 Aligned_cols=122 Identities=16% Similarity=0.112 Sum_probs=65.4
Q ss_pred HHHHHHHhCCCccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeec-CC-cc--------eec-----cCCcc
Q psy14358 158 VFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWE-KL-PV--------LRT-----YRSKW 222 (381)
Q Consensus 158 ~lkw~~~~cp~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~-~~-~~--------~R~-----~~sKw 222 (381)
+.+.+.++. +.+|++..|+|+.+..+-|.+.+..... .+....|..... .. .. .+. -...|
T Consensus 74 a~N~g~~~A-~gd~i~fLD~D~~~~~~wL~~ll~~l~~---~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (299)
T cd02510 74 ARIAGARAA-TGDVLVFLDSHCEVNVGWLEPLLARIAE---NRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKW 149 (299)
T ss_pred HHHHHHHHc-cCCEEEEEeCCcccCccHHHHHHHHHHh---CCCeEEEeeeccccCCCeeEecCCCceeEEecccceecc
Confidence 344444554 6899999999999987766666654421 112233321010 00 00 000 00111
Q ss_pred cccccc-----cc-CCCCCCccccceEeeCHHHHHHHHHHhccCCCCCCccchhhHHhhHHhCCCceee
Q psy14358 223 RVSFSE-----YR-DHFYPPHCHGNALLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAK 285 (381)
Q Consensus 223 yv~~~~-----yp-~~~yP~Y~~G~gYvLS~d~a~~l~~~~~~~~~~~~~EDV~vTGi~l~~~gi~~~~ 285 (381)
...... .+ .....+.+.|++.++++++.+.+-.-... ......||+-+ .+=+..+|.+...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~-~~~~~~ED~Dl-~~R~~~~G~~i~~ 216 (299)
T cd02510 150 LPLPEEERRRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEG-MDIWGGENLEL-SFKVWQCGGSIEI 216 (299)
T ss_pred ccCCHHHhhhcCCCCCccCccccceeeEEEHHHHHHhCCCCCc-ccccCchhHHH-HHHHHHcCCeEEE
Confidence 111000 01 11234567899999999999888543333 33334699998 6666667776544
No 28
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=90.69 E-value=5.7 Score=36.13 Aligned_cols=76 Identities=16% Similarity=0.089 Sum_probs=45.6
Q ss_pred CceEEEEecCCChhhHHHHHHHHhhCCCEEEecccCCCCchhHHHHHHHHHHHHhCCCccEEEEeCCceeeeHHHHHHHH
Q psy14358 111 RVSVYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELL 190 (381)
Q Consensus 111 ~v~~~FvlG~~~~~~~~~L~~E~~~~~DII~~df~DsY~NLt~Ktl~~lkw~~~~cp~a~fvlK~DDD~fvnv~~L~~~L 190 (381)
...++++...++....+.+ ++...+..+....- + -. .|.- ++....+.. +.+|++..|+|+.+..+.|.+.+
T Consensus 28 ~~eiivvdd~s~d~~~~~l-~~~~~~~~~~v~~~-~-~~---g~~~-a~n~g~~~a-~~d~v~~lD~D~~~~~~~l~~l~ 99 (235)
T cd06434 28 PLEIIVVTDGDDEPYLSIL-SQTVKYGGIFVITV-P-HP---GKRR-ALAEGIRHV-TTDIVVLLDSDTVWPPNALPEML 99 (235)
T ss_pred CCEEEEEeCCCChHHHHHH-HhhccCCcEEEEec-C-CC---ChHH-HHHHHHHHh-CCCEEEEECCCceeChhHHHHHH
Confidence 4566666555533333433 34455666655432 1 12 2332 233333333 79999999999999999888888
Q ss_pred HhcC
Q psy14358 191 TRTL 194 (381)
Q Consensus 191 ~~~~ 194 (381)
....
T Consensus 100 ~~~~ 103 (235)
T cd06434 100 KPFE 103 (235)
T ss_pred Hhcc
Confidence 7663
No 29
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=90.60 E-value=5.6 Score=34.78 Aligned_cols=138 Identities=12% Similarity=0.017 Sum_probs=72.2
Q ss_pred CceEEEEecCCChhhHHHHHHHHhhCCCEEEecccCCCCchhHHHHHHHHHHHHhCCCccEEEEeCCceeeeHHHHHHHH
Q psy14358 111 RVSVYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELL 190 (381)
Q Consensus 111 ~v~~~FvlG~~~~~~~~~L~~E~~~~~DII~~df~DsY~NLt~Ktl~~lkw~~~~cp~a~fvlK~DDD~fvnv~~L~~~L 190 (381)
...++.+-+.++....+.+++..+++..+.......+. .|. .+++.+.+++ ..+|++..|+|.....+.|.+.+
T Consensus 29 ~~eiivvdd~s~d~t~~~~~~~~~~~~~i~~i~~~~n~----G~~-~a~n~g~~~a-~~d~i~~~D~D~~~~~~~l~~l~ 102 (181)
T cd04187 29 DYEIIFVDDGSTDRTLEILRELAARDPRVKVIRLSRNF----GQQ-AALLAGLDHA-RGDAVITMDADLQDPPELIPEML 102 (181)
T ss_pred CeEEEEEeCCCCccHHHHHHHHHhhCCCEEEEEecCCC----CcH-HHHHHHHHhc-CCCEEEEEeCCCCCCHHHHHHHH
Confidence 55666665555333334444444455555544443322 122 3445555555 56999999999999877676666
Q ss_pred HhcCCCCCCCceEEEeeeecCCc-ceeccCCccccccccccCCCCCCccccceEeeCHHHHHHHHHHhc
Q psy14358 191 TRTLSPHGTRNLLMCPIVWEKLP-VLRTYRSKWRVSFSEYRDHFYPPHCHGNALLYSPDVVFKLYQHLQ 258 (381)
Q Consensus 191 ~~~~~~~~~~~l~~G~~~~~~~~-~~R~~~sKwyv~~~~yp~~~yP~Y~~G~gYvLS~d~a~~l~~~~~ 258 (381)
..... .....+|.. ..... ..+.-.++.+...........-+...|++.++++++++.+..-..
T Consensus 103 ~~~~~---~~~~v~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~d~ 167 (181)
T cd04187 103 AKWEE---GYDVVYGVR-KNRKESWLKRLTSKLFYRLINKLSGVDIPDNGGDFRLMDRKVVDALLLLPE 167 (181)
T ss_pred HHHhC---CCcEEEEEe-cCCcchHHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEcHHHHHHHHhcCC
Confidence 65432 345666654 21110 000000111100000001122355678889999999998875443
No 30
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=89.85 E-value=0.47 Score=45.65 Aligned_cols=72 Identities=13% Similarity=0.072 Sum_probs=50.5
Q ss_pred ccceEeeCHHHHHHHHHHhcc---CCCCCCccchhhHHhhHHhCCCceeecCCCCCCC-----CCee-ee-cCceeEEec
Q psy14358 239 HGNALLYSPDVVFKLYQHLQT---DQEYFWVDDVFITGIVFSKLNLTHAKFSWWPGHD-----EPVV-IL-YSKMDLQHN 308 (381)
Q Consensus 239 ~G~gYvLS~d~a~~l~~~~~~---~~~~~~~EDV~vTGi~l~~~gi~~~~~~~f~~~~-----~~~~-~~-~~~~i~~H~ 308 (381)
+|+|+.+|..+|+.|.+.-.. ..+.+.--|-.| ..|+..+|++.+.-++||... .++. .. ..-++++||
T Consensus 12 GGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i-~~C~~~lgv~LT~e~g~hQ~Di~Gd~~G~~~a~~~~pl~SlHH 90 (255)
T PF04646_consen 12 GGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRI-QACIAELGVPLTKEPGFHQMDIRGDPSGFLEAHPLAPLVSLHH 90 (255)
T ss_pred cCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHH-HHHHHHhCCCceecCCceeEeeccCcceeeecCCCCceeeeee
Confidence 899999999999999987533 134445578888 888888999999888886542 2221 11 123677787
Q ss_pred cCH
Q psy14358 309 LSQ 311 (381)
Q Consensus 309 ~sp 311 (381)
..-
T Consensus 91 ~~~ 93 (255)
T PF04646_consen 91 WDS 93 (255)
T ss_pred hhh
Confidence 754
No 31
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=89.59 E-value=9.2 Score=35.25 Aligned_cols=180 Identities=8% Similarity=-0.042 Sum_probs=87.4
Q ss_pred cEEEEEECCCCCHHHHHHHHHHhcc-----CceEEEEecCCChhhHHHHHHHHhhCCCEEEecccCCCCchhHHHHHHHH
Q psy14358 86 VYLVLIHSAPYNYDKRRLIRNTWGT-----RVSVYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFK 160 (381)
Q Consensus 86 ~Lli~V~S~p~~~~rR~aIR~TWg~-----~v~~~FvlG~~~~~~~~~L~~E~~~~~DII~~df~DsY~NLt~Ktl~~lk 160 (381)
.+-|+|++.-+...-...++.-..+ ...++++...++....+.+.+..+. .+......+ |. .|. ..++
T Consensus 30 ~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~--~v~~i~~~~---~~-g~~-~a~n 102 (251)
T cd06439 30 TVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK--GVKLLRFPE---RR-GKA-AALN 102 (251)
T ss_pred EEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC--cEEEEEcCC---CC-ChH-HHHH
Confidence 5667777766544344455554444 2456555544433333333333222 343332222 21 232 3455
Q ss_pred HHHHhCCCccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecCCcc--eeccCCcccccccc--cc-CCCCC
Q psy14358 161 WVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLPV--LRTYRSKWRVSFSE--YR-DHFYP 235 (381)
Q Consensus 161 w~~~~cp~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~~~--~R~~~sKwyv~~~~--yp-~~~yP 235 (381)
...++. +.+|++-.|+|+.+..+-|.+.+..... +.-....|.. ...... .+.....|...... +. ....+
T Consensus 103 ~gi~~a-~~d~i~~lD~D~~~~~~~l~~l~~~~~~--~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (251)
T cd06439 103 RALALA-TGEIVVFTDANALLDPDALRLLVRHFAD--PSVGAVSGEL-VIVDGGGSGSGEGLYWKYENWLKRAESRLGST 178 (251)
T ss_pred HHHHHc-CCCEEEEEccccCcCHHHHHHHHHHhcC--CCccEEEeEE-EecCCcccchhHHHHHHHHHHHHHHHHhcCCe
Confidence 555555 5699999999999997666666665532 1223333433 211110 00000011110000 00 01123
Q ss_pred CccccceEeeCHHHHHHHHHHhccCCCCCCccchhhHHhhHHhCCCcee
Q psy14358 236 PHCHGNALLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHA 284 (381)
Q Consensus 236 ~Y~~G~gYvLS~d~a~~l~~~~~~~~~~~~~EDV~vTGi~l~~~gi~~~ 284 (381)
..+.|+++.+.+++.+ .. ......||..+ +.-+...|.+..
T Consensus 179 ~~~~g~~~~~rr~~~~------~~-~~~~~~eD~~l-~~~~~~~G~~~~ 219 (251)
T cd06439 179 VGANGAIYAIRRELFR------PL-PADTINDDFVL-PLRIARQGYRVV 219 (251)
T ss_pred eeecchHHHhHHHHhc------CC-CcccchhHHHH-HHHHHHcCCeEE
Confidence 4456777777777665 11 22344799998 666666676544
No 32
>PRK11204 N-glycosyltransferase; Provisional
Probab=89.28 E-value=16 Score=37.00 Aligned_cols=180 Identities=10% Similarity=0.044 Sum_probs=95.7
Q ss_pred cEEEEEECCCCCHHHHHHHHHHhcc---CceEEEEecCC-ChhhHHHHHHHHhhCCCEEEecccCCCCchhHHHHHHHHH
Q psy14358 86 VYLVLIHSAPYNYDKRRLIRNTWGT---RVSVYFFIGET-DPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKW 161 (381)
Q Consensus 86 ~Lli~V~S~p~~~~rR~aIR~TWg~---~v~~~FvlG~~-~~~~~~~L~~E~~~~~DII~~df~DsY~NLt~Ktl~~lkw 161 (381)
.+-|+|++.-+...-++.++.-=.+ ...+ +++... +++..+.+++..+++..+...+..+ |. .|. .+++.
T Consensus 55 ~vsViIp~yne~~~i~~~l~sl~~q~yp~~ei-iVvdD~s~d~t~~~l~~~~~~~~~v~~i~~~~---n~-Gka-~aln~ 128 (420)
T PRK11204 55 GVSILVPCYNEGENVEETISHLLALRYPNYEV-IAINDGSSDNTGEILDRLAAQIPRLRVIHLAE---NQ-GKA-NALNT 128 (420)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHhCCCCCeEE-EEEECCCCccHHHHHHHHHHhCCcEEEEEcCC---CC-CHH-HHHHH
Confidence 4567777766543333333332222 3444 444444 4445555555566666665554333 32 243 44666
Q ss_pred HHHhCCCccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecCCcceeccCCcccccc--cccc---------
Q psy14358 162 VVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLPVLRTYRSKWRVSF--SEYR--------- 230 (381)
Q Consensus 162 ~~~~cp~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~~~~R~~~sKwyv~~--~~yp--------- 230 (381)
+.+++ +.+|++..|+|..+..+.|.+.++.... .++ .|.+ ... +..++..+ +.-.. .+|.
T Consensus 129 g~~~a-~~d~i~~lDaD~~~~~d~L~~l~~~~~~---~~~--v~~v-~g~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 199 (420)
T PRK11204 129 GAAAA-RSEYLVCIDGDALLDPDAAAYMVEHFLH---NPR--VGAV-TGN-PRIRNRST-LLGRIQVGEFSSIIGLIKRA 199 (420)
T ss_pred HHHHc-CCCEEEEECCCCCCChhHHHHHHHHHHh---CCC--eEEE-ECC-ceeccchh-HHHHHHHHHHHHhhhHHHHH
Confidence 66666 7899999999999999888777765521 112 1211 111 11111110 00000 0000
Q ss_pred CC--CCCCccccceEeeCHHHHHHHHHHhccCCCCCCccchhhHHhhHHhCCCceee
Q psy14358 231 DH--FYPPHCHGNALLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAK 285 (381)
Q Consensus 231 ~~--~yP~Y~~G~gYvLS~d~a~~l~~~~~~~~~~~~~EDV~vTGi~l~~~gi~~~~ 285 (381)
.. ..+..++|.+.++++++.+++--- .+..-.||+.+ ++-+.+.|.+..-
T Consensus 200 ~~~~~~~~~~~G~~~~~rr~~l~~vgg~----~~~~~~ED~~l-~~rl~~~G~~i~~ 251 (420)
T PRK11204 200 QRVYGRVFTVSGVITAFRKSALHEVGYW----STDMITEDIDI-SWKLQLRGWDIRY 251 (420)
T ss_pred HHHhCCceEecceeeeeeHHHHHHhCCC----CCCcccchHHH-HHHHHHcCCeEEe
Confidence 00 112235788899999998775321 22345699999 8888777776543
No 33
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=87.55 E-value=22 Score=32.28 Aligned_cols=185 Identities=10% Similarity=0.015 Sum_probs=85.7
Q ss_pred EEECCCCC-HHHHHHHHHHhccCceEEEEecCCChhhHHHHHHHHhhCCCEEEecccCCCCchhHHHHHHHHHHHHhCCC
Q psy14358 90 LIHSAPYN-YDKRRLIRNTWGTRVSVYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPH 168 (381)
Q Consensus 90 ~V~S~p~~-~~rR~aIR~TWg~~v~~~FvlG~~~~~~~~~L~~E~~~~~DII~~df~DsY~NLt~Ktl~~lkw~~~~cp~ 168 (381)
+|++.-+. ..-++.|..--.+...++.+=+.++.+.... .|. ....+.......+ .+...---.+++.+... +
T Consensus 2 vI~~yn~~~~~l~~~l~sl~~q~~~iivvDn~s~~~~~~~--~~~-~~~~i~~i~~~~n-~G~~~a~N~g~~~a~~~--~ 75 (237)
T cd02526 2 VVVTYNPDLSKLKELLAALAEQVDKVVVVDNSSGNDIELR--LRL-NSEKIELIHLGEN-LGIAKALNIGIKAALEN--G 75 (237)
T ss_pred EEEEecCCHHHHHHHHHHHhccCCEEEEEeCCCCccHHHH--hhc-cCCcEEEEECCCc-eehHHhhhHHHHHHHhC--C
Confidence 34444444 3334444443333344444434333322221 121 2344444443332 12232233345555432 6
Q ss_pred ccEEEEeCCceeeeHHHHHHHH---HhcCCCCCCCce-EEEeeeecCCcceecc---CCccccccccccCCC--CCCccc
Q psy14358 169 VKYVFKLDDDVFMNVIQLDELL---TRTLSPHGTRNL-LMCPIVWEKLPVLRTY---RSKWRVSFSEYRDHF--YPPHCH 239 (381)
Q Consensus 169 a~fvlK~DDD~fvnv~~L~~~L---~~~~~~~~~~~l-~~G~~~~~~~~~~R~~---~sKwyv~~~~yp~~~--yP~Y~~ 239 (381)
++|++..|+|+.+..+.|.+.+ ..... .... ..|............. ...+........... -..++.
T Consensus 76 ~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (237)
T cd02526 76 ADYVLLFDQDSVPPPDMVEKLLAYKILSDK---NSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQKEGEEGLKEVDFLI 152 (237)
T ss_pred CCEEEEECCCCCcCHhHHHHHHHHHHhhcc---CCCeEEEeeeEEcCCCCeeccceeccCccceecccccCCceEeeeee
Confidence 8999999999999977777774 22211 1222 2232211111100000 000110000000011 124456
Q ss_pred cceEeeCHHHHHHHHHHhccCCCCCCccchhhHHhhHHhCCCceeec
Q psy14358 240 GNALLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKF 286 (381)
Q Consensus 240 G~gYvLS~d~a~~l~~~~~~~~~~~~~EDV~vTGi~l~~~gi~~~~~ 286 (381)
|+|.++++++.+.+-.-... -....||+.+ ++-+.+.|.+....
T Consensus 153 ~~~~~~rr~~~~~~ggfd~~--~~~~~eD~d~-~~r~~~~G~~~~~~ 196 (237)
T cd02526 153 TSGSLISLEALEKVGGFDED--LFIDYVDTEW-CLRARSKGYKIYVV 196 (237)
T ss_pred ccceEEcHHHHHHhCCCCHH--HcCccchHHH-HHHHHHcCCcEEEE
Confidence 78889999998886432222 1245689999 77777777765443
No 34
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=87.27 E-value=2.2 Score=38.58 Aligned_cols=128 Identities=12% Similarity=0.013 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHHHHhCCCccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecCCcceeccCC---ccccc--
Q psy14358 151 LTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLPVLRTYRS---KWRVS-- 225 (381)
Q Consensus 151 Lt~Ktl~~lkw~~~~cp~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~~~~R~~~s---Kwyv~-- 225 (381)
...|.-.....+.. -.+.++++-.|+|+.++.+-|.+.+..... +.-.+..|.. . . .+.++-.+ +-++.
T Consensus 15 ~N~Kv~nL~~~~~~-~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~--p~vglVt~~~-~-~-~~~~~~~~~l~~~~~~~~ 88 (175)
T PF13506_consen 15 CNPKVNNLAQGLEA-GAKYDYLVISDSDIRVPPDYLRELVAPLAD--PGVGLVTGLP-R-G-VPARGFWSRLEAAFFNFL 88 (175)
T ss_pred CChHHHHHHHHHHh-hCCCCEEEEECCCeeECHHHHHHHHHHHhC--CCCcEEEecc-c-c-cCCcCHHHHHHHHHHhHH
Confidence 34677666666655 248999999999999999988888876643 1333333322 1 1 11111100 01110
Q ss_pred cccccCCCCCCccccceEeeCHHHHHHHHHHhccCCCCCCccchhhHHhhHHhCCCceeecC
Q psy14358 226 FSEYRDHFYPPHCHGNALLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFS 287 (381)
Q Consensus 226 ~~~yp~~~yP~Y~~G~gYvLS~d~a~~l~~~~~~~~~~~~~EDV~vTGi~l~~~gi~~~~~~ 287 (381)
...+..-.-.++|.|+++++.+++.+++---.. ....--||..+ |-.+.+.|.+..-.+
T Consensus 89 ~~~~~a~~~~~~~~G~~m~~rr~~L~~~GG~~~--l~~~ladD~~l-~~~~~~~G~~v~~~~ 147 (175)
T PF13506_consen 89 PGVLQALGGAPFAWGGSMAFRREALEEIGGFEA--LADYLADDYAL-GRRLRARGYRVVLSP 147 (175)
T ss_pred HHHHHHhcCCCceecceeeeEHHHHHHcccHHH--HhhhhhHHHHH-HHHHHHCCCeEEEcc
Confidence 000111124688999999999999998732211 22345799999 888888899877544
No 35
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=87.03 E-value=11 Score=34.24 Aligned_cols=117 Identities=10% Similarity=0.035 Sum_probs=67.4
Q ss_pred HHHHHHHHhCC-CccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecCCcceeccCCccccc------cccc
Q psy14358 157 MVFKWVVYNCP-HVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLPVLRTYRSKWRVS------FSEY 229 (381)
Q Consensus 157 ~~lkw~~~~cp-~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~~~~R~~~sKwyv~------~~~y 229 (381)
.++.++.+.+. +.+|++..|+|+.+..+.|.+.+..... +.-.+..|.. ..++....++.. ...+
T Consensus 72 ~a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~--~~~~~v~~~~------~~~~~~~~~~~~~~~~~~~~~~ 143 (236)
T cd06435 72 GALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFDD--PRVGFVQAPQ------DYRDGEESLFKRMCYAEYKGFF 143 (236)
T ss_pred HHHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhcC--CCeeEEecCc------cccCCCccHHHHHHhHHHHHHH
Confidence 45777777763 5899999999999999888888776531 1212222211 111111111100 0000
Q ss_pred ----cC-CC-CCCccccceEeeCHHHHHHHHHHhccCCCCCCccchhhHHhhHHhCCCceeec
Q psy14358 230 ----RD-HF-YPPHCHGNALLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKF 286 (381)
Q Consensus 230 ----p~-~~-yP~Y~~G~gYvLS~d~a~~l~~~~~~~~~~~~~EDV~vTGi~l~~~gi~~~~~ 286 (381)
+. .. =..++.|++.++++++.+.+---. +.+..||+-+ +.=+.+.|.+..-.
T Consensus 144 ~~~~~~~~~~~~~~~~g~~~~~rr~~~~~iGgf~----~~~~~eD~dl-~~r~~~~G~~~~~~ 201 (236)
T cd06435 144 DIGMVSRNERNAIIQHGTMCLIRRSALDDVGGWD----EWCITEDSEL-GLRMHEAGYIGVYV 201 (236)
T ss_pred HHHhccccccCceEEecceEEEEHHHHHHhCCCC----CccccchHHH-HHHHHHCCcEEEEc
Confidence 00 00 013567899999999998874222 2235799999 77777777665443
No 36
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=84.87 E-value=40 Score=32.76 Aligned_cols=189 Identities=13% Similarity=0.090 Sum_probs=99.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHhcc--CceEEEEecCC-ChhhHHHHHHHHhhCCCEEEecccCCCCchhHHHHHHHHHHH
Q psy14358 87 YLVLIHSAPYNYDKRRLIRNTWGT--RVSVYFFIGET-DPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWVV 163 (381)
Q Consensus 87 Lli~V~S~p~~~~rR~aIR~TWg~--~v~~~FvlG~~-~~~~~~~L~~E~~~~~DII~~df~DsY~NLt~Ktl~~lkw~~ 163 (381)
+-++|.|.-.-....+.++..=.. ....+.++-.. .....+.+.+.. +.++......++..- ..=.-.+++.+.
T Consensus 5 i~~iiv~yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~--~~~v~~i~~~~NlG~-agg~n~g~~~a~ 81 (305)
T COG1216 5 ISIIIVTYNRGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARF--FPNVRLIENGENLGF-AGGFNRGIKYAL 81 (305)
T ss_pred eEEEEEecCCHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhc--CCcEEEEEcCCCccc-hhhhhHHHHHHh
Confidence 345555555444555555555455 22222234333 222223333322 678776655554210 111114666665
Q ss_pred HhCCCccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecCC---cce-ec-----cCCcc-ccccccccC--
Q psy14358 164 YNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKL---PVL-RT-----YRSKW-RVSFSEYRD-- 231 (381)
Q Consensus 164 ~~cp~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~---~~~-R~-----~~sKw-yv~~~~yp~-- 231 (381)
..- .+|++-.++|+.+..+-|.+.++..... ......|....... .+. +. ....| ..+....+.
T Consensus 82 ~~~--~~~~l~LN~D~~~~~~~l~~ll~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (305)
T COG1216 82 AKG--DDYVLLLNPDTVVEPDLLEELLKAAEED--PAAGVVGPLIRNYDESLYIDRRGGESDGLTGGWRASPLLEIAPDL 157 (305)
T ss_pred cCC--CcEEEEEcCCeeeChhHHHHHHHHHHhC--CCCeEeeeeEecCCCCcchheeccccccccccceecccccccccc
Confidence 542 2299999999999998888888765321 22334444311100 010 10 01112 222211111
Q ss_pred ---CCCCCccccceEeeCHHHHHHHHHHhccCCCCCCccchhhHHhhHHhCCCceee
Q psy14358 232 ---HFYPPHCHGNALLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAK 285 (381)
Q Consensus 232 ---~~yP~Y~~G~gYvLS~d~a~~l~~~~~~~~~~~~~EDV~vTGi~l~~~gi~~~~ 285 (381)
.....++.|++.++++++.+++-- -.. .-++..||+-. +.=+.++|.+..-
T Consensus 158 ~~~~~~~~~~~G~~~li~~~~~~~vG~-~de-~~F~y~eD~D~-~~R~~~~G~~i~~ 211 (305)
T COG1216 158 SSYLEVVASLSGACLLIRREAFEKVGG-FDE-RFFIYYEDVDL-CLRARKAGYKIYY 211 (305)
T ss_pred cchhhhhhhcceeeeEEcHHHHHHhCC-CCc-ccceeehHHHH-HHHHHHcCCeEEE
Confidence 112235799999999999999876 222 23578999999 8877888875443
No 37
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=83.11 E-value=22 Score=30.73 Aligned_cols=144 Identities=12% Similarity=0.072 Sum_probs=74.5
Q ss_pred HHHHHHHhcc-CceEEEEecCCChhhHHHHHHHHhhCCCEEEecccCCCCchhHHHHHHHHHHHHhCCCccEEEEeCCce
Q psy14358 101 RRLIRNTWGT-RVSVYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVFKLDDDV 179 (381)
Q Consensus 101 R~aIR~TWg~-~v~~~FvlG~~~~~~~~~L~~E~~~~~DII~~df~DsY~NLt~Ktl~~lkw~~~~cp~a~fvlK~DDD~ 179 (381)
..+.+++... ...++.+-..++....+.+++...++..+.......+.. . -.++....+.. ..+|++..|+|.
T Consensus 17 ~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~~~~~~~~~~~n~G-~----~~a~n~g~~~a-~gd~i~~lD~D~ 90 (185)
T cd04179 17 ERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARVPRVRVIRLSRNFG-K----GAAVRAGFKAA-RGDIVVTMDADL 90 (185)
T ss_pred HHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhCCCeEEEEccCCCC-c----cHHHHHHHHHh-cCCEEEEEeCCC
Confidence 3455555522 445544444443344555555555666655444444322 1 13444444444 459999999999
Q ss_pred eeeHHHHHHHHHhcCCCCCCCceEEEeeeecCC----cceeccCCcccccc--ccccCCCCCCccccceEeeCHHHHHHH
Q psy14358 180 FMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKL----PVLRTYRSKWRVSF--SEYRDHFYPPHCHGNALLYSPDVVFKL 253 (381)
Q Consensus 180 fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~----~~~R~~~sKwyv~~--~~yp~~~yP~Y~~G~gYvLS~d~a~~l 253 (381)
.+..+.|.+.+..... .......|....... ...+.. ..+.... ... ...-.....|+++++++++.+.+
T Consensus 91 ~~~~~~l~~l~~~~~~--~~~~~v~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~i 166 (185)
T cd04179 91 QHPPEDIPKLLEKLLE--GGADVVIGSRFVRGGGAGMPLLRRL-GSRLFNFLIRLL-LGVRISDTQSGFRLFRREVLEAL 166 (185)
T ss_pred CCCHHHHHHHHHHHhc--cCCcEEEEEeecCCCcccchHHHHH-HHHHHHHHHHHH-cCCCCcCCCCceeeeHHHHHHHH
Confidence 9988888777775221 244566666411111 011100 0000000 000 11123445678889999999998
Q ss_pred H
Q psy14358 254 Y 254 (381)
Q Consensus 254 ~ 254 (381)
-
T Consensus 167 ~ 167 (185)
T cd04179 167 L 167 (185)
T ss_pred H
Confidence 6
No 38
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=81.65 E-value=40 Score=31.06 Aligned_cols=184 Identities=11% Similarity=0.017 Sum_probs=90.9
Q ss_pred EEEEECCCCCHHH----HHHHHHHhcc-CceEEEEecCCChhhHHHHHHHHhhCCC--EEEecccCCCCchhHHHHHHHH
Q psy14358 88 LVLIHSAPYNYDK----RRLIRNTWGT-RVSVYFFIGETDPSNQTRLDIESETYHD--IVQGRFWDSYRNLTYKHTMVFK 160 (381)
Q Consensus 88 li~V~S~p~~~~r----R~aIR~TWg~-~v~~~FvlG~~~~~~~~~L~~E~~~~~D--II~~df~DsY~NLt~Ktl~~lk 160 (381)
-|+|++.-+...- +.+.++||.. .+.++++...++....+.+ ++...-.+ ++..+- +. |. .|. .+++
T Consensus 4 sIiIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~-~~~~~~~~~~i~~~~~-~~--~~-G~~-~a~n 77 (241)
T cd06427 4 TILVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAA-RALRLPSIFRVVVVPP-SQ--PR-TKP-KACN 77 (241)
T ss_pred EEEEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHH-HHhccCCCeeEEEecC-CC--CC-chH-HHHH
Confidence 3556654432222 2233345543 4667777666533333333 33222112 222221 11 11 222 3566
Q ss_pred HHHHhCCCccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCce-EEEeeeecCCcceeccCCccccc--cc----ccc---
Q psy14358 161 WVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNL-LMCPIVWEKLPVLRTYRSKWRVS--FS----EYR--- 230 (381)
Q Consensus 161 w~~~~cp~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l-~~G~~~~~~~~~~R~~~sKwyv~--~~----~yp--- 230 (381)
...++. +.+||+..|+|+.+..+.+.+.+..... ...++ ..|+........ .+...+.+.. .. ..+
T Consensus 78 ~g~~~a-~gd~i~~~DaD~~~~~~~l~~~~~~~~~--~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 153 (241)
T cd06427 78 YALAFA-RGEYVVIYDAEDAPDPDQLKKAVAAFAR--LDDKLACVQAPLNYYNAR-ENWLTRMFALEYAAWFDYLLPGLA 153 (241)
T ss_pred HHHHhc-CCCEEEEEcCCCCCChHHHHHHHHHHHh--cCCCEEEEeCceEeeCCC-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665 6799999999999999988888876531 11232 222210110000 0000011000 00 001
Q ss_pred CCCCCCccccceEeeCHHHHHHHHHHhccCCCCCCccchhhHHhhHHhCCCceeec
Q psy14358 231 DHFYPPHCHGNALLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKF 286 (381)
Q Consensus 231 ~~~yP~Y~~G~gYvLS~d~a~~l~~~~~~~~~~~~~EDV~vTGi~l~~~gi~~~~~ 286 (381)
....+..++|++.++++++.+.+... .+....||..+ ++=+...|.+....
T Consensus 154 ~~~~~~~~~g~~~~~rr~~~~~vgg~----~~~~~~eD~~l-~~rl~~~G~r~~~~ 204 (241)
T cd06427 154 RLGLPIPLGGTSNHFRTDVLRELGGW----DPFNVTEDADL-GLRLARAGYRTGVL 204 (241)
T ss_pred hcCCeeecCCchHHhhHHHHHHcCCC----CcccchhhHHH-HHHHHHCCceEEEe
Confidence 11233456788899999999887432 12234699999 77766667665543
No 39
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=80.69 E-value=73 Score=32.82 Aligned_cols=179 Identities=12% Similarity=0.107 Sum_probs=96.2
Q ss_pred cEEEEEECCCCCHHHHHHHHH----HhccCceEEEEecCCChhhHHHHHHHHhhCCCEEEecccCCCCchhHHHHHHHHH
Q psy14358 86 VYLVLIHSAPYNYDKRRLIRN----TWGTRVSVYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKW 161 (381)
Q Consensus 86 ~Lli~V~S~p~~~~rR~aIR~----TWg~~v~~~FvlG~~~~~~~~~L~~E~~~~~DII~~df~DsY~NLt~Ktl~~lkw 161 (381)
.+-|+|++.-+...-++.|+. ++. +..++.+-..++++..+.+++..+++..+....... |. .|. .+++.
T Consensus 76 ~vsViIP~yNE~~~i~~~l~sll~q~yp-~~eIivVdDgs~D~t~~~~~~~~~~~~~v~vv~~~~---n~-Gka-~AlN~ 149 (444)
T PRK14583 76 LVSILVPCFNEGLNARETIHAALAQTYT-NIEVIAINDGSSDDTAQVLDALLAEDPRLRVIHLAH---NQ-GKA-IALRM 149 (444)
T ss_pred cEEEEEEeCCCHHHHHHHHHHHHcCCCC-CeEEEEEECCCCccHHHHHHHHHHhCCCEEEEEeCC---CC-CHH-HHHHH
Confidence 455777777654433333332 222 455555444444444455555556666654433222 22 243 45666
Q ss_pred HHHhCCCccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecCCcceeccC---CccccccccccC-------
Q psy14358 162 VVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLPVLRTYR---SKWRVSFSEYRD------- 231 (381)
Q Consensus 162 ~~~~cp~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~~~~R~~~---sKwyv~~~~yp~------- 231 (381)
+.+++ +.+|++..|.|+.+..+.+.+.+...... ++-...-|.. ..++.. ++.... +|..
T Consensus 150 gl~~a-~~d~iv~lDAD~~~~~d~L~~lv~~~~~~-~~~g~v~g~~------~~~~~~~~~~~~~~~--e~~~~~~~~~~ 219 (444)
T PRK14583 150 GAAAA-RSEYLVCIDGDALLDKNAVPYLVAPLIAN-PRTGAVTGNP------RIRTRSTLIGRVQVG--EFSSIIGLIKR 219 (444)
T ss_pred HHHhC-CCCEEEEECCCCCcCHHHHHHHHHHHHhC-CCeEEEEccc------eecCCCcchhhHHHH--HHHHHHHHHHH
Confidence 66665 78999999999999999888777654210 1212222211 112111 111110 0100
Q ss_pred --CCC-CC-ccccceEeeCHHHHHHHHHHhccCCCCCCccchhhHHhhHHhCCCceee
Q psy14358 232 --HFY-PP-HCHGNALLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAK 285 (381)
Q Consensus 232 --~~y-P~-Y~~G~gYvLS~d~a~~l~~~~~~~~~~~~~EDV~vTGi~l~~~gi~~~~ 285 (381)
..+ +. .++|.+..+.+++.+++--.. +..-.||..+ |+-+...|.+...
T Consensus 220 ~~~~~g~~~~~sG~~~~~rr~al~~vGg~~----~~~i~ED~dl-~~rl~~~G~~i~~ 272 (444)
T PRK14583 220 TQRVYGQVFTVSGVVAAFRRRALADVGYWS----PDMITEDIDI-SWKLQLKHWSVFF 272 (444)
T ss_pred HHHHhCCceEecCceeEEEHHHHHHcCCCC----CCcccccHHH-HHHHHHcCCeEEE
Confidence 111 22 357888999999887763222 2234699999 9988887876543
No 40
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=80.28 E-value=68 Score=32.21 Aligned_cols=191 Identities=9% Similarity=-0.040 Sum_probs=109.1
Q ss_pred cEEEEEECCCCCH-HHHHHHHHHhcc---CceEEEEecCCChhhHHHHHHHHhhCCCEEEecccCCCCchhHHHHHHHHH
Q psy14358 86 VYLVLIHSAPYNY-DKRRLIRNTWGT---RVSVYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKW 161 (381)
Q Consensus 86 ~Lli~V~S~p~~~-~rR~aIR~TWg~---~v~~~FvlG~~~~~~~~~L~~E~~~~~DII~~df~DsY~NLt~Ktl~~lkw 161 (381)
.+-|+|++.-+.. .-.+.++..=.. ...++.+...++++..+.+++-..++++.+..... .+-...-..++.+
T Consensus 55 ~vsviiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~gK~~al~~ 131 (439)
T COG1215 55 KVSVIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRVIYP---EKKNGGKAGALNN 131 (439)
T ss_pred ceEEEEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHhhcCcceEEEec---cccCccchHHHHH
Confidence 5667788877666 344455554444 35666666545445555666666666544433311 1112222456777
Q ss_pred HHHhCCCccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecCCcceeccCCcccccc--------cccc-CC
Q psy14358 162 VVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLPVLRTYRSKWRVSF--------SEYR-DH 232 (381)
Q Consensus 162 ~~~~cp~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~~~~R~~~sKwyv~~--------~~yp-~~ 232 (381)
+.... +.++|+..|-|+.+..+.|.+.+.....+ ......|.....+.....+..++-..-+ .... ..
T Consensus 132 ~l~~~-~~d~V~~~DaD~~~~~d~l~~~~~~f~~~--~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 208 (439)
T COG1215 132 GLKRA-KGDVVVILDADTVPEPDALRELVSPFEDP--PVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKG 208 (439)
T ss_pred HHhhc-CCCEEEEEcCCCCCChhHHHHHHhhhcCC--CeeEEeCCceeeecCChhhhcchhcchhhhhhHHHhhhhhhhc
Confidence 77666 59999999999999999999998876421 1111222210000000000000000000 0001 12
Q ss_pred CCCCccccceEeeCHHHHHHHHHHhccCCCCCCccchhhHHhhHHhCCCceeecC
Q psy14358 233 FYPPHCHGNALLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFS 287 (381)
Q Consensus 233 ~yP~Y~~G~gYvLS~d~a~~l~~~~~~~~~~~~~EDV~vTGi~l~~~gi~~~~~~ 287 (381)
....+|.|++.++.+++++.+. .. .+..-.||..+ ++-+...|.+....+
T Consensus 209 g~~~~~~G~~~~~rr~aL~~~g---~~-~~~~i~ED~~l-t~~l~~~G~~~~~~~ 258 (439)
T COG1215 209 GLISFLSGSSSAFRRSALEEVG---GW-LEDTITEDADL-TLRLHLRGYRVVYVP 258 (439)
T ss_pred CCeEEEcceeeeEEHHHHHHhC---CC-CCCceeccHHH-HHHHHHCCCeEEEee
Confidence 2578899999999999998887 22 34455699998 888887777766544
No 41
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=79.07 E-value=41 Score=28.96 Aligned_cols=101 Identities=7% Similarity=-0.044 Sum_probs=59.4
Q ss_pred HHHHHHhCCCccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecCCcceeccCCccccccccccCCCCCCcc
Q psy14358 159 FKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLPVLRTYRSKWRVSFSEYRDHFYPPHC 238 (381)
Q Consensus 159 lkw~~~~cp~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~~~~R~~~sKwyv~~~~yp~~~yP~Y~ 238 (381)
++.+.+.+ +.+|++..|+|..+..+-+.+.++... ......|.. ..... + .. ....
T Consensus 71 ~n~g~~~a-~g~~i~~lD~D~~~~~~~l~~~~~~~~----~~~~v~g~~-~~~~~---~-~~--------------~~~~ 126 (182)
T cd06420 71 RNKAIAAA-KGDYLIFIDGDCIPHPDFIADHIELAE----PGVFLSGSR-VLLNE---K-LT--------------ERGI 126 (182)
T ss_pred HHHHHHHh-cCCEEEEEcCCcccCHHHHHHHHHHhC----CCcEEecce-eeccc---c-cc--------------eeEe
Confidence 34444444 689999999999998877777776552 223333433 11000 0 00 0334
Q ss_pred ccceEeeCHHHHHHHHHHhccCCCCCCccchhhHHhhHHhCCCceee
Q psy14358 239 HGNALLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAK 285 (381)
Q Consensus 239 ~G~gYvLS~d~a~~l~~~~~~~~~~~~~EDV~vTGi~l~~~gi~~~~ 285 (381)
.|+++.+.++....+..-... ......||+.+ +.=+.+.|+....
T Consensus 127 ~~~~~~~~r~~~~~~ggf~~~-~~~~~~eD~~l-~~r~~~~g~~~~~ 171 (182)
T cd06420 127 RGCNMSFWKKDLLAVNGFDEE-FTGWGGEDSEL-VARLLNSGIKFRK 171 (182)
T ss_pred ccceEEEEHHHHHHhCCCCcc-cccCCcchHHH-HHHHHHcCCcEEE
Confidence 677888888877744322222 22234799998 7777777865543
No 42
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=77.82 E-value=42 Score=29.43 Aligned_cols=86 Identities=13% Similarity=0.103 Sum_probs=48.9
Q ss_pred HHHHHHHhCCCccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecCCcceeccCCcccc---------cccc
Q psy14358 158 VFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLPVLRTYRSKWRV---------SFSE 228 (381)
Q Consensus 158 ~lkw~~~~cp~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~~~~R~~~sKwyv---------~~~~ 228 (381)
+++.+...-.+.++++..|.|+.+..+.+...+..... ......|.. .. +++...|.- ....
T Consensus 71 g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~---~~~~v~g~~-~~-----~~~~~~~~~~~~~~~~~~~~~~ 141 (183)
T cd06438 71 GFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAA---GARVVQAYY-NS-----KNPDDSWITRLYAFAFLVFNRL 141 (183)
T ss_pred HHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhh---CCCeeEEEE-ee-----eCCccCHHHHHHHHHHHHHHHH
Confidence 34444322346899999999999998777777766532 234555544 11 111112210 0000
Q ss_pred cc----CCCCCCccccceEeeCHHHHHH
Q psy14358 229 YR----DHFYPPHCHGNALLYSPDVVFK 252 (381)
Q Consensus 229 yp----~~~yP~Y~~G~gYvLS~d~a~~ 252 (381)
.. .-.-+.++.|+++++++++.++
T Consensus 142 ~~~~~~~~~~~~~~~G~~~~~rr~~l~~ 169 (183)
T cd06438 142 RPLGRSNLGLSCQLGGTGMCFPWAVLRQ 169 (183)
T ss_pred HHHHHHHcCCCeeecCchhhhHHHHHHh
Confidence 00 0122456789999999999988
No 43
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=77.04 E-value=29 Score=33.16 Aligned_cols=187 Identities=12% Similarity=0.028 Sum_probs=97.1
Q ss_pred EEEECCCCCHH-HHHHHHHHhc--------cCceEEEEecCC-ChhhHHH-------HHHHHhhCCCEEEecccCCCCch
Q psy14358 89 VLIHSAPYNYD-KRRLIRNTWG--------TRVSVYFFIGET-DPSNQTR-------LDIESETYHDIVQGRFWDSYRNL 151 (381)
Q Consensus 89 i~V~S~p~~~~-rR~aIR~TWg--------~~v~~~FvlG~~-~~~~~~~-------L~~E~~~~~DII~~df~DsY~NL 151 (381)
|+|++.-+..+ -.+.++.+.. ....+ |++..+ +++.... |.+|....-.+... .--.|.
T Consensus 3 IliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI-~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~---~r~~~~ 78 (254)
T cd04191 3 IVMPVYNEDPARVFAGLRAMYESLAKTGLADHFDF-FILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYR---RRRENT 78 (254)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEE-EEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEE---EcCCCC
Confidence 67777776665 4566665543 25555 888766 4433221 22222222223322 222343
Q ss_pred hHHHHHHHHHHHHhCCCccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecCCcceeccCC---ccc-cccc
Q psy14358 152 TYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLPVLRTYRS---KWR-VSFS 227 (381)
Q Consensus 152 t~Ktl~~lkw~~~~cp~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~~~~R~~~s---Kwy-v~~~ 227 (381)
-.|+-..-......-.+.+|++-.|.|+.+..+-|.+.+..... .++ +|.+ ..... ..+..+ ++. ....
T Consensus 79 g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~---~~~--vg~v-q~~~~-~~n~~~~~~~~~~~~~~ 151 (254)
T cd04191 79 GRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEA---NPR--AGII-QTAPK-LIGAETLFARLQQFANR 151 (254)
T ss_pred CccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHh---CCC--EEEE-eCCce-eECCCCHHHHHHHHHHH
Confidence 44554444444332247899999999999999988888876521 111 2222 11000 111111 110 0000
Q ss_pred ccc---------CCCCCCccccceEeeCHHHHHHHHHHh-----ccCCCCCCccchhhHHhhHHhCCCceeecC
Q psy14358 228 EYR---------DHFYPPHCHGNALLYSPDVVFKLYQHL-----QTDQEYFWVDDVFITGIVFSKLNLTHAKFS 287 (381)
Q Consensus 228 ~yp---------~~~yP~Y~~G~gYvLS~d~a~~l~~~~-----~~~~~~~~~EDV~vTGi~l~~~gi~~~~~~ 287 (381)
.|- +..--.+|.|.+.++.+++.+.+..-. .......-.||..+ |+.+...|-+..-.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l-~~~~~~~G~ri~~~~ 224 (254)
T cd04191 152 LYGPVFGRGLAAWQGGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVE-AALMRRAGWEVRLAP 224 (254)
T ss_pred HHHHHHHHHHHHhcCCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHH-HHHHHHcCCEEEEcc
Confidence 000 001124677999999999887753221 11012345799998 999988887665443
No 44
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=75.16 E-value=56 Score=32.35 Aligned_cols=182 Identities=13% Similarity=0.063 Sum_probs=88.6
Q ss_pred cEEEEEECCCCCHHHHHHHHHH------hccCceEEEEecCCChhhHHHHHHHHhhCCC-EEEecccCCCCchhHHHHHH
Q psy14358 86 VYLVLIHSAPYNYDKRRLIRNT------WGTRVSVYFFIGETDPSNQTRLDIESETYHD-IVQGRFWDSYRNLTYKHTMV 158 (381)
Q Consensus 86 ~Lli~V~S~p~~~~rR~aIR~T------Wg~~v~~~FvlG~~~~~~~~~L~~E~~~~~D-II~~df~DsY~NLt~Ktl~~ 158 (381)
.+-|+|+..-+...-.+.+++. -.....++++-..+.....+.+++-++.+++ ++......++. |. .+
T Consensus 7 ~vSVVIP~yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~G----~~-~A 81 (325)
T PRK10714 7 KVSVVIPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRNYG----QH-SA 81 (325)
T ss_pred eEEEEEcccCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCCC----HH-HH
Confidence 4556676655433333333322 1125677777666522233333433344444 44333333321 11 12
Q ss_pred HHHHHHhCCCccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecCCcceeccCCcccccc-ccccCCCCCCc
Q psy14358 159 FKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLPVLRTYRSKWRVSF-SEYRDHFYPPH 237 (381)
Q Consensus 159 lkw~~~~cp~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~~~~R~~~sKwyv~~-~~yp~~~yP~Y 237 (381)
++-..+++ +.+|++-+|+|.-.+++.+.+.++.... +.++..|.......+..|.-.++.+--. ....+..++..
T Consensus 82 ~~~G~~~A-~gd~vv~~DaD~q~~p~~i~~l~~~~~~---~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~~g~~~~d~ 157 (325)
T PRK10714 82 IMAGFSHV-TGDLIITLDADLQNPPEEIPRLVAKADE---GYDVVGTVRQNRQDSWFRKTASKMINRLIQRTTGKAMGDY 157 (325)
T ss_pred HHHHHHhC-CCCEEEEECCCCCCCHHHHHHHHHHHHh---hCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 33333444 7899999999999999988888887632 2344433321111222332222221100 11112233444
Q ss_pred cccceEeeCHHHHHHHHHHhccCCCCCCccchhhHHhhHHhCCCceeec
Q psy14358 238 CHGNALLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKF 286 (381)
Q Consensus 238 ~~G~gYvLS~d~a~~l~~~~~~~~~~~~~EDV~vTGi~l~~~gi~~~~~ 286 (381)
.+| .-++++++++.+...... ..++ -.++...|.+....
T Consensus 158 ~~g-fr~~~r~~~~~l~~~~~~--------~~~~-~~l~~~~g~~i~ev 196 (325)
T PRK10714 158 GCM-LRAYRRHIVDAMLHCHER--------STFI-PILANTFARRAIEI 196 (325)
T ss_pred CcC-eEEEcHHHHHHHHHCCCC--------ccHH-HHHHHHcCCCEEEE
Confidence 333 348999999998643322 1234 33455566655443
No 45
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=74.01 E-value=79 Score=33.64 Aligned_cols=187 Identities=11% Similarity=0.121 Sum_probs=98.1
Q ss_pred cEEEEEECCCCCHHHHHHHHHHhc----cCceEEEEecCCChhhHHHHHHHHhhCCCEEEecccCCCCchhHHHHHHHHH
Q psy14358 86 VYLVLIHSAPYNYDKRRLIRNTWG----TRVSVYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKW 161 (381)
Q Consensus 86 ~Lli~V~S~p~~~~rR~aIR~TWg----~~v~~~FvlG~~~~~~~~~L~~E~~~~~DII~~df~DsY~NLt~Ktl~~lkw 161 (381)
.+-|+|+-.-+..--.+.|+..=. .+.+++++...+++...+.+++=+++|..+...-. +. .+-+.|.- .++|
T Consensus 67 ~vaIlIPA~NE~~vI~~~l~s~L~~ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~p~v~~vv~-~~-~gp~~Ka~-aLN~ 143 (504)
T PRK14716 67 RIAIFVPAWREADVIGRMLEHNLATLDYENYRIFVGTYPNDPATLREVDRLAARYPRVHLVIV-PH-DGPTSKAD-CLNW 143 (504)
T ss_pred ceEEEEeccCchhHHHHHHHHHHHcCCCCCeEEEEEECCCChhHHHHHHHHHHHCCCeEEEEe-CC-CCCCCHHH-HHHH
Confidence 455667666554433444443311 14444443323333333333333455666532222 11 22345664 5555
Q ss_pred HHH------hC--CCccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecCCcceeccCCcc----ccccccc
Q psy14358 162 VVY------NC--PHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLPVLRTYRSKW----RVSFSEY 229 (381)
Q Consensus 162 ~~~------~c--p~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~~~~R~~~sKw----yv~~~~y 229 (381)
+.+ ++ .++++++-.|-|..+..+.|..+-... ++.++.-+.+ .... | ..+.| |.- +|
T Consensus 144 ~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~~----~~~~~VQ~pv-~~~~---~-~~~~~~ag~y~~--ef 212 (504)
T PRK14716 144 IYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYLL----PRHDFVQLPV-FSLP---R-DWGEWVAGTYMD--EF 212 (504)
T ss_pred HHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhhc----CCCCEEecce-eccC---C-chhHHHHHHHHH--HH
Confidence 543 22 246999999999999998876543322 1222211111 1000 1 11111 110 11
Q ss_pred cC---------CC--CCCccccceEeeCHHHHHHHHHHhcc--CCCCCCccchhhHHhhHHhCCCceeecC
Q psy14358 230 RD---------HF--YPPHCHGNALLYSPDVVFKLYQHLQT--DQEYFWVDDVFITGIVFSKLNLTHAKFS 287 (381)
Q Consensus 230 p~---------~~--yP~Y~~G~gYvLS~d~a~~l~~~~~~--~~~~~~~EDV~vTGi~l~~~gi~~~~~~ 287 (381)
.. .. -+..+.|.|+.+++++++++.....- ..+..-.||.-+ |+-+...|.+..-.+
T Consensus 213 ~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe~l~~~~GG~~fd~~sLTED~dL-glRL~~~G~rv~y~p 282 (504)
T PRK14716 213 AESHLKDLPVREALGGLIPSAGVGTAFSRRALERLAAERGGQPFDSDSLTEDYDI-GLRLKRAGFRQIFVR 282 (504)
T ss_pred HHHHHHHHHHHHhcCCccccCCeeEEeEHHHHHHHHhhcCCCCCCCCCcchHHHH-HHHHHHCCCEEEEec
Confidence 10 11 23457899999999999998654321 123456799999 999999999876543
No 46
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=73.39 E-value=68 Score=28.62 Aligned_cols=120 Identities=13% Similarity=-0.005 Sum_probs=61.6
Q ss_pred HHHHHHhCCCccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecCCcceeccCCcc--cccc--ccc---cC
Q psy14358 159 FKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLPVLRTYRSKW--RVSF--SEY---RD 231 (381)
Q Consensus 159 lkw~~~~cp~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~~~~R~~~sKw--yv~~--~~y---p~ 231 (381)
++...+.. +.+|++..|+|..+..+.+...+..... .......|.. ....... .....+ ..+. ..+ ..
T Consensus 70 ~n~g~~~a-~gd~i~~lD~D~~~~~~~l~~l~~~~~~--~~~~~v~g~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 144 (224)
T cd06442 70 YIEGFKAA-RGDVIVVMDADLSHPPEYIPELLEAQLE--GGADLVIGSR-YVEGGGV-EGWGLKRKLISRGANLLARLLL 144 (224)
T ss_pred HHHHHHHc-CCCEEEEEECCCCCCHHHHHHHHHHHhc--CCCCEEEEee-eecCCcc-CCCcHHHHHHHHHHHHHHHHHc
Confidence 33343444 4699999999999998888777775221 1345556654 2111100 000000 0000 000 00
Q ss_pred CCCCCccccceEeeCHHHHHHHHHHhccCCCCCCccchhhHHhhHHhCCCceeecC
Q psy14358 232 HFYPPHCHGNALLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFS 287 (381)
Q Consensus 232 ~~yP~Y~~G~gYvLS~d~a~~l~~~~~~~~~~~~~EDV~vTGi~l~~~gi~~~~~~ 287 (381)
..-...+.|++.++++++++++.... ......+|.-+ .+-+.+.|.+....+
T Consensus 145 ~~~~~~~~~~~~~~~r~~~~~ig~~~---~~~~~~~~~~l-~~~~~~~g~~i~~~p 196 (224)
T cd06442 145 GRKVSDPTSGFRAYRREVLEKLIDSL---VSKGYKFQLEL-LVRARRLGYRIVEVP 196 (224)
T ss_pred CCCCCCCCCccchhhHHHHHHHhhhc---cCCCcEEeHHH-HHHHHHcCCeEEEeC
Confidence 11234578888899999999987111 11222223334 444556676655543
No 47
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=71.38 E-value=76 Score=28.35 Aligned_cols=164 Identities=12% Similarity=0.059 Sum_probs=83.8
Q ss_pred CceEEEEecCCChhhHHHHHHHHhhCCCE-EEecccCCCCchhHHHHHHHHHHHHhCCCccEEEEeCCceeeeHHHHHHH
Q psy14358 111 RVSVYFFIGETDPSNQTRLDIESETYHDI-VQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDEL 189 (381)
Q Consensus 111 ~v~~~FvlG~~~~~~~~~L~~E~~~~~DI-I~~df~DsY~NLt~Ktl~~lkw~~~~cp~a~fvlK~DDD~fvnv~~L~~~ 189 (381)
...++.+-+.+.....+.+++..++++.. ....... |. .|. .+++...+.+ ..+|++-.|+|.....+.+.+.
T Consensus 30 ~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~---n~-G~~-~a~~~g~~~a-~gd~i~~ld~D~~~~~~~l~~l 103 (211)
T cd04188 30 SYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPK---NR-GKG-GAVRAGMLAA-RGDYILFADADLATPFEELEKL 103 (211)
T ss_pred CEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEccc---CC-CcH-HHHHHHHHHh-cCCEEEEEeCCCCCCHHHHHHH
Confidence 55666655555334445555555666654 2222222 21 121 3344444555 5699999999999998888888
Q ss_pred HHhcCCCCCCCceEEEeeeecCCc--ceeccCCccccccc---cccCCCCCCc--cccceEeeCHHHHHHHHHHhccCCC
Q psy14358 190 LTRTLSPHGTRNLLMCPIVWEKLP--VLRTYRSKWRVSFS---EYRDHFYPPH--CHGNALLYSPDVVFKLYQHLQTDQE 262 (381)
Q Consensus 190 L~~~~~~~~~~~l~~G~~~~~~~~--~~R~~~sKwyv~~~---~yp~~~yP~Y--~~G~gYvLS~d~a~~l~~~~~~~~~ 262 (381)
++.... .......|........ ..+..... ..+.. ....-.-+++ +..+..++++.+++.+...... .
T Consensus 104 ~~~~~~--~~~~~v~g~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~g~~~~~r~~~~~~~~~~~~--~ 178 (211)
T cd04188 104 EEALKT--SGYDIAIGSRAHLASAAVVKRSWLRN-LLGRGFNFLVRLLLGLGIKDTQCGFKLFTRDAARRLFPRLHL--E 178 (211)
T ss_pred HHHHhc--cCCcEEEEEeeccCCcccccccHHHH-HHHHHHHHHHHHHcCCCCcccccCceeEcHHHHHHHHhhhhc--c
Confidence 876321 1345666654221111 11100000 00000 0000001122 2345679999999998743322 2
Q ss_pred CCCccchhhHHhhHHhCCCceeecC
Q psy14358 263 YFWVDDVFITGIVFSKLNLTHAKFS 287 (381)
Q Consensus 263 ~~~~EDV~vTGi~l~~~gi~~~~~~ 287 (381)
. ..+|..+ -+.+.+.|.+....+
T Consensus 179 ~-~~~d~el-~~r~~~~g~~~~~vp 201 (211)
T cd04188 179 R-WAFDVEL-LVLARRLGYPIEEVP 201 (211)
T ss_pred c-eEeeHHH-HHHHHHcCCeEEEcC
Confidence 2 3368888 555556787666655
No 48
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=69.41 E-value=14 Score=32.75 Aligned_cols=107 Identities=13% Similarity=0.141 Sum_probs=62.3
Q ss_pred EEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecCCcceeccCCccccccc---------cccCCCCCCccccc
Q psy14358 171 YVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLPVLRTYRSKWRVSFS---------EYRDHFYPPHCHGN 241 (381)
Q Consensus 171 fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~~~~R~~~sKwyv~~~---------~yp~~~yP~Y~~G~ 241 (381)
||+-.|+|+-+..+-+.+.+..... ++-...-|.....+ ..+.-.++...+. .......+.++.|+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~--~~~~~vq~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 75 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALED--PKVDAVQGPIIFRN---RGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGS 75 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhC--CCceEEEccEEecC---CCChhheeehhhhhhhhhhhHHHHHhcCCCccccCc
Confidence 6889999999999887777766531 12222223221100 0000111111110 00112346778999
Q ss_pred eEeeCHHHHHHHHHHhccCCCCCCccchhhHHhhHHhCCCceeec
Q psy14358 242 ALLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKF 286 (381)
Q Consensus 242 gYvLS~d~a~~l~~~~~~~~~~~~~EDV~vTGi~l~~~gi~~~~~ 286 (381)
+.++++++.+.+.--. . +....||..+ |+=+.+.|.+....
T Consensus 76 ~~~~r~~~l~~vg~~~-~--~~~~~ED~~l-~~~l~~~G~~~~~~ 116 (193)
T PF13632_consen 76 GMLFRREALREVGGFD-D--PFSIGEDMDL-GFRLRRAGYRIVYV 116 (193)
T ss_pred ceeeeHHHHHHhCccc-c--cccccchHHH-HHHHHHCCCEEEEe
Confidence 9999999999775222 1 3566699999 88887888665543
No 49
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=64.86 E-value=96 Score=27.08 Aligned_cols=183 Identities=11% Similarity=0.005 Sum_probs=87.5
Q ss_pred EEEEECCCCC-HHHHHHHHHHhcc---CceEEEEecCC-ChhhHHHHHHHHhhCCCEEEecccCCCCchhHHHHHHHHHH
Q psy14358 88 LVLIHSAPYN-YDKRRLIRNTWGT---RVSVYFFIGET-DPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWV 162 (381)
Q Consensus 88 li~V~S~p~~-~~rR~aIR~TWg~---~v~~~FvlG~~-~~~~~~~L~~E~~~~~DII~~df~DsY~NLt~Ktl~~lkw~ 162 (381)
-|+|++.-+. ..-.+.++.-=.+ ...++.+-+.+ +......+.+....+.-+.... .+.-.+. -.+++.+
T Consensus 4 siii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~-~~~~~g~----~~a~n~g 78 (202)
T cd04184 4 SIVMPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQDPRIKVVF-REENGGI----SAATNSA 78 (202)
T ss_pred EEEEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEE-cccCCCH----HHHHHHH
Confidence 3556655544 3333444333333 34555554444 4333333333233333333222 2221222 2234555
Q ss_pred HHhCCCccEEEEeCCceeeeHHHHHHHHHhc-CCCCCCCceEEEeeeecC-CcceeccCCccccccccccCCC-CCCccc
Q psy14358 163 VYNCPHVKYVFKLDDDVFMNVIQLDELLTRT-LSPHGTRNLLMCPIVWEK-LPVLRTYRSKWRVSFSEYRDHF-YPPHCH 239 (381)
Q Consensus 163 ~~~cp~a~fvlK~DDD~fvnv~~L~~~L~~~-~~~~~~~~l~~G~~~~~~-~~~~R~~~sKwyv~~~~yp~~~-yP~Y~~ 239 (381)
.+.. +.+|++..|+|..+..+.+...+... .. +...+++|...... ...... .++.+. +.... +..=+.
T Consensus 79 ~~~a-~~d~i~~ld~D~~~~~~~l~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~ 150 (202)
T cd04184 79 LELA-TGEFVALLDHDDELAPHALYEVVKALNEH--PDADLIYSDEDKIDEGGKRSE---PFFKPD--WSPDLLLSQNYI 150 (202)
T ss_pred HHhh-cCCEEEEECCCCcCChHHHHHHHHHHHhC--CCCCEEEccHHhccCCCCEec---cccCCC--CCHHHhhhcCCc
Confidence 5544 67999999999999888777777654 21 23344444331100 000000 111111 01011 111123
Q ss_pred cceEeeCHHHHHHHHHHhccCCCCCCccchhhHHhhHHhCCCceeecC
Q psy14358 240 GNALLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFS 287 (381)
Q Consensus 240 G~gYvLS~d~a~~l~~~~~~~~~~~~~EDV~vTGi~l~~~gi~~~~~~ 287 (381)
|++-++++++.+++-.- . ..+...||..+ ++=+.+.|.+....+
T Consensus 151 ~~~~~~~r~~~~~iggf--~-~~~~~~eD~~l-~~rl~~~g~~~~~~~ 194 (202)
T cd04184 151 GHLLVYRRSLVRQVGGF--R-EGFEGAQDYDL-VLRVSEHTDRIAHIP 194 (202)
T ss_pred cceEeEEHHHHHHhCCC--C-cCcccchhHHH-HHHHHhccceEEEcc
Confidence 55557888887776422 2 23446799998 776666677766554
No 50
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=63.73 E-value=46 Score=31.52 Aligned_cols=122 Identities=10% Similarity=-0.075 Sum_probs=60.6
Q ss_pred HHHHHHHhCCCccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecCCcceecc---CCcccccccc--ccCC
Q psy14358 158 VFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLPVLRTY---RSKWRVSFSE--YRDH 232 (381)
Q Consensus 158 ~lkw~~~~cp~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~~~~R~~---~sKwyv~~~~--yp~~ 232 (381)
+++++.+. +++|++..|||+.+..+.+.+.+...... +..-...|..........+.+ ...+..+... .+..
T Consensus 65 Gi~~a~~~--~~d~i~~lD~D~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (281)
T TIGR01556 65 GLDASFRR--GVQGVLLLDQDSRPGNAFLAAQWKLLSAE-NGQACALGPRFFDRGTSRRLPAIHLDGLLLRQISLDGLTT 141 (281)
T ss_pred HHHHHHHC--CCCEEEEECCCCCCCHHHHHHHHHHHHhc-CCceEEECCeEEcCCCcccCCceeecccceeeecccccCC
Confidence 56676543 68999999999999977666666543210 011222332211111000000 0001000000 0000
Q ss_pred -CCCCccccceEeeCHHHHHHHHHHhccCCCCCCccchhhHHhhHHhCCCceee
Q psy14358 233 -FYPPHCHGNALLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAK 285 (381)
Q Consensus 233 -~yP~Y~~G~gYvLS~d~a~~l~~~~~~~~~~~~~EDV~vTGi~l~~~gi~~~~ 285 (381)
.-..++.++|.++++++.+++----.. -++..||+-+ .+=+.+.|.+..-
T Consensus 142 ~~~~~~~~~sg~li~~~~~~~iG~fde~--~fi~~~D~e~-~~R~~~~G~~i~~ 192 (281)
T TIGR01556 142 PQKTSFLISSGCLITREVYQRLGMMDEE--LFIDHVDTEW-SLRAQNYGIPLYI 192 (281)
T ss_pred ceeccEEEcCcceeeHHHHHHhCCccHh--hcccchHHHH-HHHHHHCCCEEEE
Confidence 112355566778999999887432221 1345689888 5545566765543
No 51
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=60.75 E-value=1.2e+02 Score=26.61 Aligned_cols=158 Identities=9% Similarity=0.011 Sum_probs=76.4
Q ss_pred ceEEEEecCC-ChhhHHHHHHHHhhCCCEEEecccCCCCchhHHHHHHHHHHHHhCCCccEEEEeCCceeeeHHHHHHHH
Q psy14358 112 VSVYFFIGET-DPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELL 190 (381)
Q Consensus 112 v~~~FvlG~~-~~~~~~~L~~E~~~~~DII~~df~DsY~NLt~Ktl~~lkw~~~~cp~a~fvlK~DDD~fvnv~~L~~~L 190 (381)
..++++.-.+ +....+.+.+-.+.+. +......+ |. .+ -.+++.+.+.+ +.+|++..|+|..+..+.+...+
T Consensus 30 ~eiiivdd~ss~d~t~~~~~~~~~~~~-i~~i~~~~---n~-G~-~~a~N~g~~~a-~gd~i~~lD~Dd~~~~~~l~~~~ 102 (201)
T cd04195 30 DEVVLVKDGPVTQSLNEVLEEFKRKLP-LKVVPLEK---NR-GL-GKALNEGLKHC-TYDWVARMDTDDISLPDRFEKQL 102 (201)
T ss_pred cEEEEEECCCCchhHHHHHHHHHhcCC-eEEEEcCc---cc-cH-HHHHHHHHHhc-CCCEEEEeCCccccCcHHHHHHH
Confidence 4554543333 4444444444444455 43333322 21 11 12355555555 78999999999999988887777
Q ss_pred HhcCCCCCCCceEEEeeeecCCcceeccCCcccccc-----ccccCCCCCCccccceEeeCHHHHHHHHHHhccCCCCCC
Q psy14358 191 TRTLSPHGTRNLLMCPIVWEKLPVLRTYRSKWRVSF-----SEYRDHFYPPHCHGNALLYSPDVVFKLYQHLQTDQEYFW 265 (381)
Q Consensus 191 ~~~~~~~~~~~l~~G~~~~~~~~~~R~~~sKwyv~~-----~~yp~~~yP~Y~~G~gYvLS~d~a~~l~~~~~~~~~~~~ 265 (381)
...... +.-.+..|........... ...+. .|. ..+... --+ ..|++.++.+++.+++-. - .+...
T Consensus 103 ~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~-~~~-~~~~~~~~rr~~~~~~g~---~-~~~~~ 173 (201)
T cd04195 103 DFIEKN-PEIDIVGGGVLEFDSDGND-IGKRR-LPTSHDDILKFARR-RSP-FNHPTVMFRKSKVLAVGG---Y-QDLPL 173 (201)
T ss_pred HHHHhC-CCeEEEcccEEEECCCCCe-ecccc-CCCCHHHHHHHhcc-CCC-CCChHHhhhHHHHHHcCC---c-CCCCC
Confidence 754210 1223333433111000000 00000 010 001000 012 235566777766655421 1 22367
Q ss_pred ccchhhHHhhHHhCCCceeec
Q psy14358 266 VDDVFITGIVFSKLNLTHAKF 286 (381)
Q Consensus 266 ~EDV~vTGi~l~~~gi~~~~~ 286 (381)
.||..+ ..-+...|.+....
T Consensus 174 ~eD~~~-~~r~~~~g~~~~~~ 193 (201)
T cd04195 174 VEDYAL-WARMLANGARFANL 193 (201)
T ss_pred chHHHH-HHHHHHcCCceecc
Confidence 899998 87777777765544
No 52
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=60.01 E-value=87 Score=24.93 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=25.2
Q ss_pred HHHHHHHhCCCccEEEEeCCceeeeHHHHHHHHHh
Q psy14358 158 VFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTR 192 (381)
Q Consensus 158 ~lkw~~~~cp~a~fvlK~DDD~fvnv~~L~~~L~~ 192 (381)
.+..+.+++ +.++++-+|+|..+..+.+...+..
T Consensus 68 ~~~~~~~~~-~~d~v~~~d~D~~~~~~~~~~~~~~ 101 (156)
T cd00761 68 ARNAGLKAA-RGEYILFLDADDLLLPDWLERLVAE 101 (156)
T ss_pred HHHHHHHHh-cCCEEEEECCCCccCccHHHHHHHH
Confidence 344444444 7999999999999988888776443
No 53
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=57.99 E-value=1.4e+02 Score=26.54 Aligned_cols=110 Identities=10% Similarity=0.009 Sum_probs=58.4
Q ss_pred HHHHHHhCCCccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeee---cCCcceeccCCccccccccccCCCCC
Q psy14358 159 FKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVW---EKLPVLRTYRSKWRVSFSEYRDHFYP 235 (381)
Q Consensus 159 lkw~~~~cp~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~---~~~~~~R~~~sKwyv~~~~yp~~~yP 235 (381)
+.-+.+.+ +.+|++..|+|..+..+.+.+.+.... ..+...|.... ......+....++.... .....
T Consensus 64 ~n~g~~~a-~~~~i~~~D~D~~~~~~~l~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 134 (221)
T cd02522 64 MNAGAAAA-RGDWLLFLHADTRLPPDWDAAIIETLR----ADGAVAGAFRLRFDDPGPRLRLLELGANLRS----RLFGL 134 (221)
T ss_pred HHHHHHhc-cCCEEEEEcCCCCCChhHHHHHHHHhh----cCCcEEEEEEeeecCCccchhhhhhccccee----cccCC
Confidence 33444444 579999999999998777777655442 22333333211 11111110001111110 00111
Q ss_pred CccccceEeeCHHHHHHHHHHhccCCCCCCccchhhHHhhHHhCCCce
Q psy14358 236 PHCHGNALLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTH 283 (381)
Q Consensus 236 ~Y~~G~gYvLS~d~a~~l~~~~~~~~~~~~~EDV~vTGi~l~~~gi~~ 283 (381)
+ .++.|.++++++.+.+-.-.. .+..||..+ +.=+.+.|...
T Consensus 135 ~-~~~~~~~~r~~~~~~~G~fd~----~~~~ED~d~-~~r~~~~G~~~ 176 (221)
T cd02522 135 P-YGDQGLFIRRELFEELGGFPE----LPLMEDVEL-VRRLRRRGRPA 176 (221)
T ss_pred C-cCCceEEEEHHHHHHhCCCCc----cccccHHHH-HHHHHhCCCEE
Confidence 2 245688999998877653322 237899998 77666777544
No 54
>PF14851 FAM176: FAM176 family
Probab=55.94 E-value=19 Score=32.20 Aligned_cols=19 Identities=42% Similarity=0.793 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhhhhccCCC
Q psy14358 11 VVGIFLCLCLLIDFLSIPP 29 (381)
Q Consensus 11 ~~~~~~~~c~~~~~~~~~~ 29 (381)
-+|++|+||+++-+.+..+
T Consensus 31 C~GLlLtLcllV~risc~~ 49 (153)
T PF14851_consen 31 CAGLLLTLCLLVIRISCRP 49 (153)
T ss_pred HHHHHHHHHHHHhhheeec
Confidence 4689999999999988854
No 55
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=55.50 E-value=2e+02 Score=27.61 Aligned_cols=166 Identities=11% Similarity=0.039 Sum_probs=89.5
Q ss_pred CceEEEEecCCChhhHHHHHHHHhhCCCE-E-EecccCCCCchhHHHHHHHHHHHHhCCCccEEEEeCCceeeeHHHHHH
Q psy14358 111 RVSVYFFIGETDPSNQTRLDIESETYHDI-V-QGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDE 188 (381)
Q Consensus 111 ~v~~~FvlG~~~~~~~~~L~~E~~~~~DI-I-~~df~DsY~NLt~Ktl~~lkw~~~~cp~a~fvlK~DDD~fvnv~~L~~ 188 (381)
.+.++++=+.+..+..+.|.+-.+.++-+ + ..+......+.+ .+.+-+.+++ +.++++..|.|+.+..+.+.+
T Consensus 34 ~~eiIvvd~~s~~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a----~arN~g~~~A-~~d~l~flD~D~i~~~~~i~~ 108 (281)
T PF10111_consen 34 DFEIIVVDDGSSDEFDEELKKLCEKNGFIRYIRHEDNGEPFSRA----KARNIGAKYA-RGDYLIFLDADCIPSPDFIEK 108 (281)
T ss_pred CEEEEEEECCCchhHHHHHHHHHhccCceEEEEcCCCCCCcCHH----HHHHHHHHHc-CCCEEEEEcCCeeeCHHHHHH
Confidence 55666655555444556677777777766 3 222222222332 2345555555 899999999999999998888
Q ss_pred HHH---hcCCCCCCCceEEEeeeecCCcc-eecc-CCcccccc----cccc--CCCCC-CccccceEeeCHHHHHHHHHH
Q psy14358 189 LLT---RTLSPHGTRNLLMCPIVWEKLPV-LRTY-RSKWRVSF----SEYR--DHFYP-PHCHGNALLYSPDVVFKLYQH 256 (381)
Q Consensus 189 ~L~---~~~~~~~~~~l~~G~~~~~~~~~-~R~~-~sKwyv~~----~~yp--~~~yP-~Y~~G~gYvLS~d~a~~l~~~ 256 (381)
.+. .... .....+.+......... ..-. ..+..... .... .+.+. ....|++.+++++.-.++---
T Consensus 109 ~~~~~~~l~~--~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~r~~f~~iGGf 186 (281)
T PF10111_consen 109 LLNHVKKLDK--NPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFISGKNSLWEFIAFASSCFLINREDFLEIGGF 186 (281)
T ss_pred HHHHHHHHhc--CCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHhhccccccccccccceEEEEEHHHHHHhCCC
Confidence 888 3321 11223332221111000 0000 00000000 0000 11111 233569999999988877655
Q ss_pred hccCCCCCCccchhhHHhhHHhCCCceee
Q psy14358 257 LQTDQEYFWVDDVFITGIVFSKLNLTHAK 285 (381)
Q Consensus 257 ~~~~~~~~~~EDV~vTGi~l~~~gi~~~~ 285 (381)
-.. ......||.-+ |.=+.+.|.....
T Consensus 187 DE~-f~G~G~ED~D~-~~RL~~~~~~~~~ 213 (281)
T PF10111_consen 187 DER-FRGWGYEDIDF-GYRLKKAGYKFKR 213 (281)
T ss_pred Ccc-ccCCCcchHHH-HHHHHHcCCcEec
Confidence 444 33467899999 7766677766543
No 56
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=52.66 E-value=3e+02 Score=30.82 Aligned_cols=186 Identities=12% Similarity=0.111 Sum_probs=103.9
Q ss_pred cEEEEEECCCCCHHHHHHHHHH---hcc-CceEEEEecCCChhhHHHHHHHHhhCCCEEEecccCCCCchhHHHHHHHHH
Q psy14358 86 VYLVLIHSAPYNYDKRRLIRNT---WGT-RVSVYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKW 161 (381)
Q Consensus 86 ~Lli~V~S~p~~~~rR~aIR~T---Wg~-~v~~~FvlG~~~~~~~~~L~~E~~~~~DII~~df~DsY~NLt~Ktl~~lkw 161 (381)
.+-|+|+-.-+...-.+.|... .-. +..++++...+|....+.+++-.++|.++...-... .+-+.|. .+|++
T Consensus 64 ~vsIlVPa~nE~~vi~~~i~~ll~~ldYP~~eI~vi~~~nD~~T~~~~~~l~~~~p~~~~v~~~~--~g~~gKa-~aLN~ 140 (727)
T PRK11234 64 PLAIMVPAWNETGVIGNMAELAATTLDYENYHIFVGTYPNDPATQADVDAVCARFPNVHKVVCAR--PGPTSKA-DCLNN 140 (727)
T ss_pred CEEEEEecCcchhhHHHHHHHHHHhCCCCCeEEEEEecCCChhHHHHHHHHHHHCCCcEEEEeCC--CCCCCHH-HHHHH
Confidence 5667777766555444444432 221 455655544335544555666566788763322222 1224565 45667
Q ss_pred HHHhC------C--CccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecCCcceecc---CCcccccccccc
Q psy14358 162 VVYNC------P--HVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLPVLRTY---RSKWRVSFSEYR 230 (381)
Q Consensus 162 ~~~~c------p--~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~~~~R~~---~sKwyv~~~~yp 230 (381)
+...+ + .++.++-.|-|+.+..+.|. .+..... ..+..-+.. . +..|+. -++-|+. +|.
T Consensus 141 ~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l~~---~~~~VQ~p~-~---p~~~~~~~~~~~~~~~--EFa 210 (727)
T PRK11234 141 VLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYLVE---RKDLIQIPV-Y---PFEREWTHFTSGTYID--EFA 210 (727)
T ss_pred HHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhhcC---CCCeEeecc-c---CCCccHHHHHHHHHHH--HHH
Confidence 66654 2 34557779999999999997 3433321 123332322 1 111110 0111111 111
Q ss_pred ----C-----C--CCCCccccceEeeCHHHHHHHHHHhcc--CCCCCCccchhhHHhhHHhCCCceee
Q psy14358 231 ----D-----H--FYPPHCHGNALLYSPDVVFKLYQHLQT--DQEYFWVDDVFITGIVFSKLNLTHAK 285 (381)
Q Consensus 231 ----~-----~--~yP~Y~~G~gYvLS~d~a~~l~~~~~~--~~~~~~~EDV~vTGi~l~~~gi~~~~ 285 (381)
. . .-+-.++|.|..+||.+++.+.+.... .....--||.-+ |+-+...|.+..-
T Consensus 211 ~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l~al~~~ggg~~~~~~~lTED~dl-g~rL~~~G~~v~f 277 (727)
T PRK11234 211 ELHGKDVPVREALAGQVPSAGVGTCFSRRAVTALLEDGDGIAFDVQSLTEDYDI-GFRLKEKGMREIF 277 (727)
T ss_pred HHhhhhhHHHHHcCCCcccCCceEEEecccHHHHHHhcCCCCcCCCcchHHHHH-HHHHHHCCCEEEE
Confidence 0 1 124568899999999988877776521 144556799999 9999899988754
No 57
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=44.94 E-value=54 Score=33.03 Aligned_cols=83 Identities=13% Similarity=0.047 Sum_probs=50.0
Q ss_pred HHHHHHHhCCCccEEEEeCCceeeeHH---HHHHHHHhcCCCCCCCceEEEeeeecCCcceeccCCccccccccccCCCC
Q psy14358 158 VFKWVVYNCPHVKYVFKLDDDVFMNVI---QLDELLTRTLSPHGTRNLLMCPIVWEKLPVLRTYRSKWRVSFSEYRDHFY 234 (381)
Q Consensus 158 ~lkw~~~~cp~a~fvlK~DDD~fvnv~---~L~~~L~~~~~~~~~~~l~~G~~~~~~~~~~R~~~sKwyv~~~~yp~~~y 234 (381)
++.|+-... ++++++-.|||..+.++ -+.+.|.... ..+.++|-. ..+. .++....... |...|
T Consensus 88 aln~vF~~~-~~~~vIILEDDl~~sPdFf~yf~~~l~~y~----~D~~v~~IS-a~Nd------nG~~~~~~~~-~~~ly 154 (334)
T cd02514 88 ALTQTFNLF-GYSFVIILEDDLDIAPDFFSYFQATLPLLE----EDPSLWCIS-AWND------NGKEHFVDDT-PSLLY 154 (334)
T ss_pred HHHHHHHhc-CCCEEEEECCCCccCHhHHHHHHHHHHHHh----cCCCEEEEE-eecc------CCcccccCCC-cceEE
Confidence 677776665 79999999999999988 4455555442 223333322 2211 1121110000 11222
Q ss_pred -CCccccceEeeCHHHHHHH
Q psy14358 235 -PPHCHGNALLYSPDVVFKL 253 (381)
Q Consensus 235 -P~Y~~G~gYvLS~d~a~~l 253 (381)
-.|+.|+|.++.+++-+.+
T Consensus 155 rs~ff~glGWml~r~~W~e~ 174 (334)
T cd02514 155 RTDFFPGLGWMLTRKLWKEL 174 (334)
T ss_pred EecCCCchHHHHHHHHHHHh
Confidence 3688999999999999888
No 58
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=41.00 E-value=2.6e+02 Score=30.92 Aligned_cols=128 Identities=13% Similarity=0.087 Sum_probs=70.0
Q ss_pred chhHHHHHHHHHHHHhCCCccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCce-EEEe-eeecC-CcceeccCCcccccc
Q psy14358 150 NLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNL-LMCP-IVWEK-LPVLRTYRSKWRVSF 226 (381)
Q Consensus 150 NLt~Ktl~~lkw~~~~cp~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l-~~G~-~~~~~-~~~~R~~~sKwyv~~ 226 (381)
|.-.|. ..++.+.++. +.+|++..|.|+.+..+-|.+.+..... .+++ +++. ....+ .+..|+-.....++.
T Consensus 212 n~~~KA-gnLN~al~~a-~gd~Il~lDAD~v~~pd~L~~~v~~f~~---dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~ 286 (713)
T TIGR03030 212 NVHAKA-GNINNALKHT-DGELILIFDADHVPTRDFLQRTVGWFVE---DPKLFLVQTPHFFVSPDPIERNLGTFRRMPN 286 (713)
T ss_pred CCCCCh-HHHHHHHHhc-CCCEEEEECCCCCcChhHHHHHHHHHHh---CCCEEEEeCCeeccCCCHHhhhhHHHHHhhh
Confidence 333453 2466666665 6899999999999998877776654311 1122 1111 10111 111121100000110
Q ss_pred c--c-c----cC-CC-CCCccccceEeeCHHHHHHHHHHhccCCCCCCccchhhHHhhHHhCCCceeecC
Q psy14358 227 S--E-Y----RD-HF-YPPHCHGNALLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFS 287 (381)
Q Consensus 227 ~--~-y----p~-~~-yP~Y~~G~gYvLS~d~a~~l~~~~~~~~~~~~~EDV~vTGi~l~~~gi~~~~~~ 287 (381)
+ . | ++ +. -.+++.|++.++.+++.+.+---. ...-.||..+ |+-+.+.|.+....+
T Consensus 287 e~~~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf~----~~~vtED~~l-~~rL~~~G~~~~y~~ 351 (713)
T TIGR03030 287 ENELFYGLIQDGNDFWNAAFFCGSAAVLRREALDEIGGIA----GETVTEDAET-ALKLHRRGWNSAYLD 351 (713)
T ss_pred HHHHHHHHHHHHHhhhCCeeecCceeEEEHHHHHHcCCCC----CCCcCcHHHH-HHHHHHcCCeEEEec
Confidence 0 0 0 00 00 135678999999999998764222 1223799997 999988888865443
No 59
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=37.65 E-value=3.2e+02 Score=31.21 Aligned_cols=184 Identities=9% Similarity=0.045 Sum_probs=92.5
Q ss_pred cEEEEEECCCCCHHH-HH----HHHHHhcc-CceEEEEecCCChhhHHHHHHHHhhCCCEEEecccCCCCchhHHHHHHH
Q psy14358 86 VYLVLIHSAPYNYDK-RR----LIRNTWGT-RVSVYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVF 159 (381)
Q Consensus 86 ~Lli~V~S~p~~~~r-R~----aIR~TWg~-~v~~~FvlG~~~~~~~~~L~~E~~~~~DII~~df~DsY~NLt~Ktl~~l 159 (381)
.+-|+|++.-+..+- ++ +.+.+|-+ ++. ++|+..++.+...++.+|. + +-...-. .|.-.|. ..+
T Consensus 261 ~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~E-ViVVDDgS~D~t~~la~~~---~-v~yI~R~---~n~~gKA-GnL 331 (852)
T PRK11498 261 TVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLN-IWILDDGGREEFRQFAQEV---G-VKYIARP---THEHAKA-GNI 331 (852)
T ss_pred cEEEEEecCCCcHHHHHHHHHHHHhccCCCCceE-EEEEeCCCChHHHHHHHHC---C-cEEEEeC---CCCcchH-HHH
Confidence 455777776543221 22 22334544 344 4566555222234444442 2 3222111 2333444 356
Q ss_pred HHHHHhCCCccEEEEeCCceeeeHHHHHHHHHhc-CCCCCCCceEEEeeee-cCCcceeccCCccccccc--c-c----c
Q psy14358 160 KWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRT-LSPHGTRNLLMCPIVW-EKLPVLRTYRSKWRVSFS--E-Y----R 230 (381)
Q Consensus 160 kw~~~~cp~a~fvlK~DDD~fvnv~~L~~~L~~~-~~~~~~~~l~~G~~~~-~~~~~~R~~~sKwyv~~~--~-y----p 230 (381)
+.+.+++ +.+|++..|.|..+..+-|.+.+... .. ++-.+.-|.... ...+..|+-..--..+.+ . | +
T Consensus 332 N~aL~~a-~GEyIavlDAD~ip~pdfL~~~V~~f~~d--P~VglVQtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~iq~ 408 (852)
T PRK11498 332 NNALKYA-KGEFVAIFDCDHVPTRSFLQMTMGWFLKD--KKLAMMQTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQD 408 (852)
T ss_pred HHHHHhC-CCCEEEEECCCCCCChHHHHHHHHHHHhC--CCeEEEEcceeccCCchHHHhhHHHhhcccchhHHHHHHHh
Confidence 7777776 78999999999999887777655432 11 111111111100 111111210000000100 0 0 0
Q ss_pred C-C-CCCCccccceEeeCHHHHHHHHHHhccCCCCCCccchhhHHhhHHhCCCceeec
Q psy14358 231 D-H-FYPPHCHGNALLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKF 286 (381)
Q Consensus 231 ~-~-~yP~Y~~G~gYvLS~d~a~~l~~~~~~~~~~~~~EDV~vTGi~l~~~gi~~~~~ 286 (381)
+ + .--.+|.|++.++.+++.+.+---.. . .-.||..+ ++-+...|.+....
T Consensus 409 g~~~~~a~~~~Gs~aviRReaLeeVGGfd~---~-titED~dl-slRL~~~Gyrv~yl 461 (852)
T PRK11498 409 GNDMWDATFFCGSCAVIRRKPLDEIGGIAV---E-TVTEDAHT-SLRLHRRGYTSAYM 461 (852)
T ss_pred HHHhhcccccccceeeeEHHHHHHhcCCCC---C-ccCccHHH-HHHHHHcCCEEEEE
Confidence 0 0 01256789999999999988753222 2 24699997 99998888876654
No 60
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=36.57 E-value=3.2e+02 Score=24.61 Aligned_cols=34 Identities=15% Similarity=-0.019 Sum_probs=26.4
Q ss_pred HHHHHHHhCCCccEEEEeCCceeeeHHHHHHHHHh
Q psy14358 158 VFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTR 192 (381)
Q Consensus 158 ~lkw~~~~cp~a~fvlK~DDD~fvnv~~L~~~L~~ 192 (381)
+++...+.. +.+|++.+|.|+.+..+-|.+.+..
T Consensus 78 a~n~g~~~a-~~~~i~~~DaD~~~~~~~l~~~~~~ 111 (232)
T cd06437 78 ALAEGMKVA-KGEYVAIFDADFVPPPDFLQKTPPY 111 (232)
T ss_pred HHHHHHHhC-CCCEEEEEcCCCCCChHHHHHhhhh
Confidence 455666665 7999999999999998888774443
No 61
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=36.46 E-value=1.8e+02 Score=28.75 Aligned_cols=101 Identities=16% Similarity=0.227 Sum_probs=52.3
Q ss_pred CCCCcEEEEEECCCCCHHHHHHHHHHhcc-----------CceEEEEecCCChhhHHHHHHHHhh-------CCCEEEec
Q psy14358 82 CLDTVYLVLIHSAPYNYDKRRLIRNTWGT-----------RVSVYFFIGETDPSNQTRLDIESET-------YHDIVQGR 143 (381)
Q Consensus 82 C~~~~Lli~V~S~p~~~~rR~aIR~TWg~-----------~v~~~FvlG~~~~~~~~~L~~E~~~-------~~DII~~d 143 (381)
..+..|+|+|+|.... +-+-+.+|=++ .+.++-+++.+|++....+.++... -|=+...+
T Consensus 49 ~~~~~L~IGIpTV~R~--~~sYL~~TL~SLl~~ls~~Er~~i~IvVllAd~Dp~~~~~~~~~i~~~f~~~i~sG~l~VI~ 126 (297)
T PF04666_consen 49 RTGKKLCIGIPTVKRE--KESYLLDTLASLLDGLSPEERKDIVIVVLLADTDPDYHPSVAQNISTRFADHIESGLLEVIS 126 (297)
T ss_pred CCCCeEEEEecccccC--CCchHHHHHHHHHHhCCHHHhcCeEEEEEecCCChhhhHHHHHHHHHHhHHHHHhCceEEEe
Confidence 3333799999998733 22345555555 5666666777755433333322221 12222222
Q ss_pred ccCC-CCch--------------hHHHHHH--HHHHHHhC-CCccEEEEeCCceeeeHH
Q psy14358 144 FWDS-YRNL--------------TYKHTMV--FKWVVYNC-PHVKYVFKLDDDVFMNVI 184 (381)
Q Consensus 144 f~Ds-Y~NL--------------t~Ktl~~--lkw~~~~c-p~a~fvlK~DDD~fvnv~ 184 (381)
-..+ |..+ ..++..- +-++..+| +.++|++-..||+.....
T Consensus 127 ~p~~~Yp~l~~l~~~~~d~~~rv~wrsKq~lDya~Lm~y~~~~~~YyL~LEDDVia~~~ 185 (297)
T PF04666_consen 127 PPPSYYPDLDNLKRNFGDSEERVRWRSKQNLDYAFLMNYCQNLGDYYLQLEDDVIAAPG 185 (297)
T ss_pred cccccCCChhhhhhcccChhhhhhHHHhhcccHHHHHHHHHhcCCeEEEecCCeEechh
Confidence 2222 2211 1122222 33344566 468999999999988665
No 62
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=34.91 E-value=2.2e+02 Score=22.22 Aligned_cols=70 Identities=16% Similarity=0.163 Sum_probs=40.0
Q ss_pred CceEEEEecCC-ChhhHHHHHHHHhhCCCEEEecccCCCCchhHHHHHHHHHHHHhCCCccEEEEeCCceeeeHHH
Q psy14358 111 RVSVYFFIGET-DPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQ 185 (381)
Q Consensus 111 ~v~~~FvlG~~-~~~~~~~L~~E~~~~~DII~~df~DsY~NLt~Ktl~~lkw~~~~cp~a~fvlK~DDD~fvnv~~ 185 (381)
++..++++-.. +....+.| ++ +.++-.......+..-..+ ...++.+.+...+++|++-+|-|=|+..+.
T Consensus 18 G~d~i~i~d~~s~D~t~~~l-~~---~~~v~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 18 GVDHIYIYDDGSTDGTREIL-RA---LPGVGIIRWVDPYRDERRQ-RAWRNALIERAFDADWVLFLDADEFLVPPP 88 (97)
T ss_pred CCCEEEEEECCCCccHHHHH-Hh---CCCcEEEEeCCCccchHHH-HHHHHHHHHhCCCCCEEEEEeeeEEEecCC
Confidence 45666665444 22333333 22 3445445555555443333 345555555545899999999999987664
No 63
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=33.86 E-value=5.4e+02 Score=26.42 Aligned_cols=102 Identities=13% Similarity=0.145 Sum_probs=54.6
Q ss_pred cEEEEEECCCCCHHHHHHHHH----Hhcc-CceEEEEecCCChhhHHHHHHHHhhCCCEEEecccCCCCchhHHHHHHHH
Q psy14358 86 VYLVLIHSAPYNYDKRRLIRN----TWGT-RVSVYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFK 160 (381)
Q Consensus 86 ~Lli~V~S~p~~~~rR~aIR~----TWg~-~v~~~FvlG~~~~~~~~~L~~E~~~~~DII~~df~DsY~NLt~Ktl~~lk 160 (381)
.+-|+|++.-+...-++.|+. ++.. .+.++.+-+.+.++..+.+++-.+.+..+...- .+. | ..|. .+++
T Consensus 50 ~vsVIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~~v~v~~-~~~--~-~Gka-~AlN 124 (439)
T TIGR03111 50 DITIIIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFPGLSLRY-MNS--D-QGKA-KALN 124 (439)
T ss_pred CEEEEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCCCeEEEE-eCC--C-CCHH-HHHH
Confidence 345666665544433444443 3433 234433333332333333333334455443221 121 1 1332 4566
Q ss_pred HHHHhCCCccEEEEeCCceeeeHHHHHHHHHhc
Q psy14358 161 WVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRT 193 (381)
Q Consensus 161 w~~~~cp~a~fvlK~DDD~fvnv~~L~~~L~~~ 193 (381)
++.+++ +.+|++..|+|..+..+.+.+.+...
T Consensus 125 ~gl~~s-~g~~v~~~DaD~~~~~d~L~~l~~~f 156 (439)
T TIGR03111 125 AAIYNS-IGKYIIHIDSDGKLHKDAIKNMVTRF 156 (439)
T ss_pred HHHHHc-cCCEEEEECCCCCcChHHHHHHHHHH
Confidence 777766 68999999999999988888777654
No 64
>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C33 (clan CA). The type example is equine arteritis virus Nsp2-type cysteine proteinase, which is involved in viral polyprotein processing [].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=31.99 E-value=27 Score=29.35 Aligned_cols=28 Identities=32% Similarity=0.714 Sum_probs=21.1
Q ss_pred HHHHHHHHHH--H---HhCCCccEEEEeCCcee
Q psy14358 153 YKHTMVFKWV--V---YNCPHVKYVFKLDDDVF 180 (381)
Q Consensus 153 ~Ktl~~lkw~--~---~~cp~a~fvlK~DDD~f 180 (381)
.++++.++.- . ..||+++|++|.|++-+
T Consensus 48 ~~~iq~l~lPat~~~~~~Cp~ArYv~~l~~qHW 80 (108)
T PF05412_consen 48 YQVIQSLRLPATLDRNGACPHARYVLKLDGQHW 80 (108)
T ss_pred HHHHHHccCceeccCCCCCCCCEEEEEecCceE
Confidence 4566666553 2 56999999999999866
No 65
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=29.16 E-value=3.1e+02 Score=27.23 Aligned_cols=91 Identities=14% Similarity=0.119 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcc------CceEEEEecCCChhhHHHHHHHHhhCCCEEEecccCC--CCchhHHHHHHHHHHHHhCCCc
Q psy14358 98 YDKRRLIRNTWGT------RVSVYFFIGETDPSNQTRLDIESETYHDIVQGRFWDS--YRNLTYKHTMVFKWVVYNCPHV 169 (381)
Q Consensus 98 ~~rR~aIR~TWg~------~v~~~FvlG~~~~~~~~~L~~E~~~~~DII~~df~Ds--Y~NLt~Ktl~~lkw~~~~cp~a 169 (381)
.+.|+..|..=.+ ...++++=|.. .....|..=.....-++-+++.+. +..-+.--..+..|.++.| +.
T Consensus 19 ~~~R~f~~~~~~k~fts~~~~~vi~~~~~~--~~d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~-~S 95 (346)
T COG4092 19 TDSRQFSRTSAVKVFTSSDITMVICLRAHE--VMDRLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEKC-ES 95 (346)
T ss_pred hHHHHHhhHhhhhhccccccEEEEEEecch--hHHHHHHHHhccccceEEEecCCCccccchhhhhhccchhhhccc-cc
Confidence 3456666555333 23333333332 222344444444455565666442 3333455567788999999 89
Q ss_pred cEEEEeCCceeeeHHHHHHHHH
Q psy14358 170 KYVFKLDDDVFMNVIQLDELLT 191 (381)
Q Consensus 170 ~fvlK~DDD~fvnv~~L~~~L~ 191 (381)
.+++..|-|+|...+++.+.|.
T Consensus 96 n~vlFlDvDc~~S~dnF~k~l~ 117 (346)
T COG4092 96 NLVLFLDVDCFGSSDNFAKMLS 117 (346)
T ss_pred cEEEEEeccccccHHHHHHHHH
Confidence 9999999999999999999884
No 66
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=28.83 E-value=26 Score=25.09 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=16.6
Q ss_pred chhhhHHHHHHHHHhhhhhccCCC
Q psy14358 6 KLVLIVVGIFLCLCLLIDFLSIPP 29 (381)
Q Consensus 6 ~~~~~~~~~~~~~c~~~~~~~~~~ 29 (381)
+|++++ +.++.|++.|...++.
T Consensus 5 rwiili--~iv~~Cl~lyl~ald~ 26 (47)
T PRK10299 5 RWVVLV--VVVLACLLLWAQVFNM 26 (47)
T ss_pred eehHHH--HHHHHHHHHHHHHHHH
Confidence 566666 5667799999987776
No 67
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=25.95 E-value=7.1e+02 Score=27.71 Aligned_cols=189 Identities=13% Similarity=0.080 Sum_probs=100.7
Q ss_pred cEEEEEECCCCCHHH-HHHHHHHhcc--------CceEEEEecCC-ChhhHH----HHHHHHhhCC---CEEEecccCCC
Q psy14358 86 VYLVLIHSAPYNYDK-RRLIRNTWGT--------RVSVYFFIGET-DPSNQT----RLDIESETYH---DIVQGRFWDSY 148 (381)
Q Consensus 86 ~Lli~V~S~p~~~~r-R~aIR~TWg~--------~v~~~FvlG~~-~~~~~~----~L~~E~~~~~---DII~~df~DsY 148 (381)
.+.|+|++.-+..++ +..++.+..+ +.. +|++..+ +++... ++.+=.++++ .|....- -
T Consensus 125 ~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e-~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R---~ 200 (691)
T PRK05454 125 RTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFD-FFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRR---R 200 (691)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEE-EEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEEC---C
Confidence 677888888776543 4566666643 334 4888777 443221 1122223333 3433222 2
Q ss_pred CchhHHHHHHHHHHHHhCCCccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecCCcceeccCCcccccccc
Q psy14358 149 RNLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLPVLRTYRSKWRVSFSE 228 (381)
Q Consensus 149 ~NLt~Ktl~~lkw~~~~cp~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~~~~R~~~sKwyv~~~~ 228 (381)
.|.-.|.-..-++......+.+|++-.|-|+.+..+-+.+.+..... .++ +|-+ .. .+...+..+ ++--...
T Consensus 201 ~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~---dP~--vGlV-Qt-~~~~~n~~s-lfaR~qq 272 (691)
T PRK05454 201 RNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEA---NPR--AGLI-QT-LPVAVGADT-LFARLQQ 272 (691)
T ss_pred cCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhh---CcC--EEEE-eC-CccCcCCCC-HHHHHHH
Confidence 34446777666666655557899999999999999988888875421 111 3333 21 111111111 1110001
Q ss_pred ccCCCC--------------CCccccceEeeCHHHHHHHHHHh---cc--CCCCCCccchhhHHhhHHhCCCceeecC
Q psy14358 229 YRDHFY--------------PPHCHGNALLYSPDVVFKLYQHL---QT--DQEYFWVDDVFITGIVFSKLNLTHAKFS 287 (381)
Q Consensus 229 yp~~~y--------------P~Y~~G~gYvLS~d~a~~l~~~~---~~--~~~~~~~EDV~vTGi~l~~~gi~~~~~~ 287 (381)
+..+.| -..+.|..-++.+++......-. .. .....-.||... |..+...|-+..-.+
T Consensus 273 f~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~-a~~l~~~GyrV~~~p 349 (691)
T PRK05454 273 FATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVE-AALMRRAGWGVWLAP 349 (691)
T ss_pred HHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHH-HHHHHHCCCEEEEcC
Confidence 100000 11224666788888766542110 11 012345789997 999998888876554
No 68
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=24.86 E-value=4.8e+02 Score=25.59 Aligned_cols=84 Identities=14% Similarity=0.182 Sum_probs=53.0
Q ss_pred CceEEEEecCCC--hhhHHHHHHHH----------hhCCCEE--EecccCCC-------C-----chhHHHHHHH-HHHH
Q psy14358 111 RVSVYFFIGETD--PSNQTRLDIES----------ETYHDIV--QGRFWDSY-------R-----NLTYKHTMVF-KWVV 163 (381)
Q Consensus 111 ~v~~~FvlG~~~--~~~~~~L~~E~----------~~~~DII--~~df~DsY-------~-----NLt~Ktl~~l-kw~~ 163 (381)
.+.+-|++|.+. ....+.|+++. ..|+-|. .-||.+.- + ..-+|.++-. +|+.
T Consensus 56 lIsLgfLv~d~~e~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~LL 135 (269)
T PF03452_consen 56 LISLGFLVSDSSEFDNTLKILEAALKKLQSHGPESKRFRSITILRKDFGQQLSQDRSERHAFEVQRPRRRAMARARNFLL 135 (269)
T ss_pred heEEEEEcCCCchhHHHHHHHHHHHHHHhccCcccCCcceEEEEcCCCcccccCchhhccchhhHHHHHHHHHHHHHHHH
Confidence 788899999983 44545555443 2355553 45664421 1 1122332222 3432
Q ss_pred --HhCCCccEEEEeCCceeeeHHHHHHHHHhcC
Q psy14358 164 --YNCPHVKYVFKLDDDVFMNVIQLDELLTRTL 194 (381)
Q Consensus 164 --~~cp~a~fvlK~DDD~fvnv~~L~~~L~~~~ 194 (381)
..-|..+||+-.|-|+.-.++.|++.|-..+
T Consensus 136 ~~aL~p~~swVlWlDaDIv~~P~~lI~dli~~~ 168 (269)
T PF03452_consen 136 SSALGPWHSWVLWLDADIVETPPTLIQDLIAHD 168 (269)
T ss_pred HhhcCCcccEEEEEecCcccCChHHHHHHHhCC
Confidence 2336899999999999999999999998763
No 69
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=24.25 E-value=37 Score=29.10 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=6.8
Q ss_pred chhhhHHHHHHHHHhh
Q psy14358 6 KLVLIVVGIFLCLCLL 21 (381)
Q Consensus 6 ~~~~~~~~~~~~~c~~ 21 (381)
||+++++.|.+++.++
T Consensus 1 RW~l~~iii~~i~l~~ 16 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFL 16 (130)
T ss_pred CeeeHHHHHHHHHHHH
Confidence 4555544333333333
No 70
>PF03213 Pox_P35: Poxvirus P35 protein; InterPro: IPR004900 The Poxvirus P35 protein is an immunodominant envelope protein. It binds to heparan sulphate on the cell surface to provide virion attachment to target cell [].; GO: 0019031 viral envelope
Probab=23.26 E-value=1.3e+02 Score=30.05 Aligned_cols=99 Identities=12% Similarity=0.086 Sum_probs=54.7
Q ss_pred ccceEeeCHHHHHHHHHHhccCCCCCC-ccchhhHHhhHHhCCCceeecCCCCCCCCCeeeecCceeEEeccCH---HHH
Q psy14358 239 HGNALLYSPDVVFKLYQHLQTDQEYFW-VDDVFITGIVFSKLNLTHAKFSWWPGHDEPVVILYSKMDLQHNLSQ---YIL 314 (381)
Q Consensus 239 ~G~gYvLS~d~a~~l~~~~~~~~~~~~-~EDV~vTGi~l~~~gi~~~~~~~f~~~~~~~~~~~~~~i~~H~~sp---y~m 314 (381)
+=++||+.-..+.+|+.+..+ .+-.. -=-..+ ..+-+.+||.++-+.+ + ..++.....+++-+.+++ -++
T Consensus 185 SLsAYIIr~~~a~kl~~~i~~-~~Gvst~l~~Ei-~rlE~~l~inR~Vl~~---s-~~yV~hd~~l~s~~R~~~~~~~~w 258 (325)
T PF03213_consen 185 SLSAYIIRVSTAKKLYNEIIK-NGGVSTSLSFEI-YRLENRLGINRQVLND---S-SKYVHHDYRLVSEKRVNEMKNSIW 258 (325)
T ss_pred eeEEEEEEhHHHHHHHHHHHh-CCCCccceeeeH-HHHHhhhCchhhhhcC---c-cceeecchhHHHHHhhhhhhhhHH
Confidence 347899999999999999876 43111 111223 4566788988876641 0 112212222333333332 355
Q ss_pred HHcccccccccccc----CCCCcceeeeecccccc
Q psy14358 315 AKLNLTHAKFSWWP----GHDEPVVILYSKMDLQY 345 (381)
Q Consensus 315 ~~~~~~~~~~~~w~----~~~~p~~~~~~~~~~~~ 345 (381)
.+++. -+.+.|+ -.+-|..+.|.+.|..-
T Consensus 259 srl~~--Wla~~~P~~~y~lttPLfSfFGlfDInv 291 (325)
T PF03213_consen 259 SRLGK--WLAKRFPGAYYFLTTPLFSFFGLFDINV 291 (325)
T ss_pred HHHHH--HHHhhCCCchhhhhchHHHHcccchhHH
Confidence 55443 1222233 34568888898888653
No 71
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=22.61 E-value=68 Score=29.88 Aligned_cols=110 Identities=10% Similarity=-0.005 Sum_probs=59.3
Q ss_pred CCccEEEEeCCceeeeHHHHHHHHHhcCCCCCCCceEEEeeeecCCcceeccCCccccc--cccc-----------cCCC
Q psy14358 167 PHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLPVLRTYRSKWRVS--FSEY-----------RDHF 233 (381)
Q Consensus 167 p~a~fvlK~DDD~fvnv~~L~~~L~~~~~~~~~~~l~~G~~~~~~~~~~R~~~sKwyv~--~~~y-----------p~~~ 233 (381)
.+.+|++.+|.|+.+..+.|.+.+...... +.-....|.. .. ++..+.|... ..+| ..-.
T Consensus 72 a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~-p~vg~v~g~~-~~-----~~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g 144 (244)
T cd04190 72 DDPEFILLVDADTKFDPDSIVQLYKAMDKD-PEIGGVCGEI-HP-----MGKKQGPLVMYQVFEYAISHWLDKAFESVFG 144 (244)
T ss_pred CCCCEEEEECCCCcCCHhHHHHHHHHHHhC-CCEEEEEeee-EE-----cCCcchhHHHhHheehhhhhhhcccHHHcCC
Confidence 478999999999999998877777654210 1112223332 11 1110011000 0011 1113
Q ss_pred CCCccccceEeeCHHHHHHHHHHhc---------cC-------CCCCCccchhhHHhhHHhCCCcee
Q psy14358 234 YPPHCHGNALLYSPDVVFKLYQHLQ---------TD-------QEYFWVDDVFITGIVFSKLNLTHA 284 (381)
Q Consensus 234 yP~Y~~G~gYvLS~d~a~~l~~~~~---------~~-------~~~~~~EDV~vTGi~l~~~gi~~~ 284 (381)
....+.|++.++.+++.+.+..... .. ......||..+ +..+...|.+..
T Consensus 145 ~~~~~~G~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l-~~~l~~~G~~~~ 210 (244)
T cd04190 145 FVTCLPGCFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRIL-CTLLLKAGPKRK 210 (244)
T ss_pred ceEECCCceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccce-eHHHhccCCccE
Confidence 4567889999999998877532211 00 01234699998 666655565443
No 72
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=21.82 E-value=7.8e+02 Score=24.30 Aligned_cols=190 Identities=13% Similarity=0.044 Sum_probs=90.3
Q ss_pred cEEEEEECCCCCHHHHHHHHHHhcc-----------CceEEEEecCCChhhHHHHHHHHhhC----CCEEEecccCCCCc
Q psy14358 86 VYLVLIHSAPYNYDKRRLIRNTWGT-----------RVSVYFFIGETDPSNQTRLDIESETY----HDIVQGRFWDSYRN 150 (381)
Q Consensus 86 ~Lli~V~S~p~~~~rR~aIR~TWg~-----------~v~~~FvlG~~~~~~~~~L~~E~~~~----~DII~~df~DsY~N 150 (381)
.+-|+|+..-+...-.+.++++... ...+++|-..+.....+.+++-.+.+ .++-...... |
T Consensus 71 ~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~---N 147 (333)
T PTZ00260 71 DLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLR---N 147 (333)
T ss_pred EEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCC---C
Confidence 5667777766555445666666542 35565555444222222233323332 1244333332 2
Q ss_pred hhHHHHHHHHHHHHhCCCccEEEEeCCceeeeHHHHHHHHHhcCC-CCCCCceEEEeeeecC-C--cc----eeccCCcc
Q psy14358 151 LTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLS-PHGTRNLLMCPIVWEK-L--PV----LRTYRSKW 222 (381)
Q Consensus 151 Lt~Ktl~~lkw~~~~cp~a~fvlK~DDD~fvnv~~L~~~L~~~~~-~~~~~~l~~G~~~~~~-~--~~----~R~~~sKw 222 (381)
. .|. .+++-..++. +.+|++-+|.|....++.+...++.... ..+.-++.+|...... . .. .|.-.++-
T Consensus 148 ~-G~~-~A~~~Gi~~a-~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~~~~~~ 224 (333)
T PTZ00260 148 K-GKG-GAVRIGMLAS-RGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRNILMYG 224 (333)
T ss_pred C-ChH-HHHHHHHHHc-cCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccccCcHHHHHHHHH
Confidence 2 122 2223333333 6799999999999887765555443210 0013456677541111 1 00 11100000
Q ss_pred --ccccccccCCCCCCccccceEeeCHHHHHHHHHHhccCCCCCCccchhhHHhhHHhCCCceeecC
Q psy14358 223 --RVSFSEYRDHFYPPHCHGNALLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFS 287 (381)
Q Consensus 223 --yv~~~~yp~~~yP~Y~~G~gYvLS~d~a~~l~~~~~~~~~~~~~EDV~vTGi~l~~~gi~~~~~~ 287 (381)
.+- ...-+..... ...+.-++++++++.+.... . .+.+. -|+.+ -+.+.+.|.+....+
T Consensus 225 ~~~l~-~~~~~~~i~D-~~~Gfk~~~r~~~~~i~~~~-~-~~~~~-fd~El-l~~a~~~g~~I~EvP 285 (333)
T PTZ00260 225 FHFIV-NTICGTNLKD-TQCGFKLFTRETARIIFPSL-H-LERWA-FDIEI-VMIAQKLNLPIAEVP 285 (333)
T ss_pred HHHHH-HHHcCCCccc-CCCCeEEEeHHHHHHHhhhc-c-ccCcc-chHHH-HHHHHHcCCCEEEEc
Confidence 000 0111122222 23344589999999886442 2 22222 46776 667778888776655
Done!