RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14358
(381 letters)
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR;
glycosyltransferase, developmental protein,
transmembrane, G apparatus, notch signaling; 1.8A {Mus
musculus} PDB: 2j0b_A*
Length = 280
Score = 50.5 bits (120), Expect = 2e-07
Identities = 31/198 (15%), Positives = 65/198 (32%), Gaps = 24/198 (12%)
Query: 96 YNYDKRRLIRNTWGTRVS--VYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTY 153
++ + L+ +TW +R+ + F D Q RL + + Q S+ L+
Sbjct: 25 FHRSRLDLLLDTWVSRIRQQTFIFTDSPDERLQERLGP----HLVVTQCSAEHSHPALSC 80
Query: 154 KHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLP 213
K M ++ + +++ +DDD ++N + L + L + P
Sbjct: 81 K--MAAEFDAFLVSGLRWFCHVDDDNYVNP----KALLQLLKTFPQDRDVYVGKPSLNRP 134
Query: 214 VLRTYRSKWRVSFSEYRDHFYPPHCHGNALLYSPDVVFKLYQH------LQTDQEYFWVD 267
+ + S + + G + + K+ + T D
Sbjct: 135 IHASELQ----SKQRTKLVRFWFATGGAGFCINRQLALKMVPWASGSHFVDTSALIRLPD 190
Query: 268 DVFITGIVFSKLN--LTH 283
D + I+ KL L
Sbjct: 191 DCTVGYIIECKLGGRLQP 208
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 2e-04
Identities = 65/397 (16%), Positives = 115/397 (28%), Gaps = 134/397 (33%)
Query: 14 IFLCLCLLIDFLSIPPDSPNQEDQFALLLSQGLTSSD-STWQSSSDLLPPDD-------S 65
I L + + D+ + +QGL + W + P D S
Sbjct: 188 IKFSAETLSELIRTTLDAEK-------VFTQGL---NILEWLENPSNTPDKDYLLSIPIS 237
Query: 66 TRLINLTNFEFLINPPCLDTVYLVLIHSAPYNYDK-RRLIR------------------N 106
LI + Y+V + + R ++ +
Sbjct: 238 CPLIGVIQL----------AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD 287
Query: 107 TW-------GTRVSVYFFIG----ETDPSNQTRLDIESETYHDIVQGRFWD-----SYRN 150
+W ++V FFIG E P + D ++ S N
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYP----NTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 151 LTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMC--PIV 208
LT + V +V H+ V ++++ +G +NL++ P
Sbjct: 344 LTQEQ--VQDYVNKTNSHL----PAGKQVEISLV------------NGAKNLVVSGPPQS 385
Query: 209 WEKLPV-LRTYRSK-----WRVSFSE----YRDHFYP---P-HCHGNALLYSPDVVFKLY 254
L + LR ++ R+ FSE + + F P P H H LL +
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH---LLV--PASDLIN 440
Query: 255 QHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFSWWPGHDEPVVILYSKMDLQHNLSQYIL 314
+ L + F D+ I V+ T G D + + + I+
Sbjct: 441 KDLVKNNVSFNAKDIQIP--VYD----TFD------GSD----LRVLSGSISERIVDCII 484
Query: 315 ---------AKLNLTHA-KFSWWPGHDEPVVILYSKM 341
+ TH F PG + +L +
Sbjct: 485 RLPVKWETTTQFKATHILDFG--PGGASGLGVLTHRN 519
Score = 31.2 bits (70), Expect = 0.66
Identities = 39/261 (14%), Positives = 66/261 (25%), Gaps = 103/261 (39%)
Query: 22 IDFLSIPPDSPNQEDQFALLLSQGLTSSDSTWQSSSDLLPPDDSTRLINLTNF------- 74
+ F +I E F + S+ T++S LL + T F
Sbjct: 1691 MIFETIVDGKLKTEKIFKEI---NEHSTSYTFRSEKGLL---------SATQFTQPALTL 1738
Query: 75 -----------EFLINPPCL----------------------DTVYLV-----LIHSAPY 96
+ LI V +V + A
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAV- 1797
Query: 97 NYDKRRLIRNTWGTRVSVYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHT 156
+ L R+ +G + +P + E +V+ K T
Sbjct: 1798 --PRDELGRSNYG--------MIAINPG-RVAASFSQEALQYVVER---------VGKRT 1837
Query: 157 MVFKWVV-YNCPHVKYVF--KLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCPIVWEKLP 213
+V YN + +YV L LD +T L+ + I +L
Sbjct: 1838 GWLVEIVNYNVENQQYVAAGDLRA--------LDT-VTNVLNFIKLQK-----IDIIELQ 1883
Query: 214 VLRTYRSKWRVSFSEYRDHFY 234
+S E H +
Sbjct: 1884 K--------SLSLEEVEGHLF 1896
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 0.001
Identities = 52/360 (14%), Positives = 98/360 (27%), Gaps = 108/360 (30%)
Query: 53 WQSSSDLLPPDDSTRLINLTNFEFLINPPC----------------LDTVYLVLIHSAPY 96
W + + P+ L L + I+P + L+ S PY
Sbjct: 186 WLNLKNCNSPET--VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 97 NYDKRRLI--RNTWGTRVSVYFFIGETDPSNQTRLDIESETYHDIVQGRFW---DSYRNL 151
+ L+ N + F ++ + ++ RF D
Sbjct: 244 ---ENCLLVLLNVQNAKAWNAF-------------NLSCKI---LLTTRFKQVTDFLSAA 284
Query: 152 TYKHTMVFKWVVYNCPHVKYVFKLDD--DVFMNVIQL--DELLTRTLSPH--GTRNLLMC 205
T H + H D+ + + + +L P T N
Sbjct: 285 TTTHISL--------DHHSMTLTPDEVKSLLLKYLDCRPQDL------PREVLTTNPRRL 330
Query: 206 PIVWEKLPVLRTYRSKWRVSFSEYRDHFYPPHCHG-----NALLYSPDVVFKLYQHLQTD 260
I+ E + R + W ++ N L P K++ L
Sbjct: 331 SIIAESI---RDGLATW----DNWKHVNCDKLTTIIESSLNVL--EPAEYRKMFDRL--- 378
Query: 261 QEYFWVDDVFITGIVFSKLNLTHAKFSWWPGHDEPVVILYSKMDLQHNLSQYILAKLNLT 320
F I I+ S + W + V M + + L +Y L +
Sbjct: 379 -SVF-PPSAHIPTILLSLI---------WFDVIKSDV-----MVVVNKLHKYSLVEKQPK 422
Query: 321 HAKFSWWPGHD---------EPVVILYSKMDLQYYDPHKTLFAYLWEKDYVFKYKYMYVA 371
+ S E L+ + + +Y+ KT + Y+ +Y Y ++
Sbjct: 423 ESTISI---PSIYLELKVKLENEYALHRSI-VDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Score = 31.4 bits (70), Expect = 0.67
Identities = 39/276 (14%), Positives = 75/276 (27%), Gaps = 63/276 (22%)
Query: 129 LDIESE----TYHDIVQGRFWDSY-RNLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNV 183
+D E+ Y DI+ F D++ N K + + + ++ D V
Sbjct: 7 MDFETGEHQYQYKDILS-VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV---- 61
Query: 184 IQLDELLTRTLSPHGTRNLLMC---------PIVWEKLPVLRTYRSKWRVSFSEYRDHFY 234
L TL + + + + S + E RD Y
Sbjct: 62 SGTLRLFW-TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 235 ---PPHCHGNALLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIV-FSKLNLT-------- 282
N + KL Q L + +V I G++ K +
Sbjct: 121 NDNQVFAKYN--VSRLQPYLKLRQALLELRP---AKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 283 -HAKFS---WW--PGHD-------EPVVILYSKMD--LQHNLSQYILAKLNLTHAK---- 323
K +W + E + L ++D KL + +
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 324 --FSWWPGHDEPVVIL---YSKMDLQYYDPH-KTLF 353
P ++ +++L + ++ K L
Sbjct: 236 RLLKSKP-YENCLLVLLNVQNAKAWNAFNLSCKILL 270
Score = 29.4 bits (65), Expect = 2.3
Identities = 44/283 (15%), Positives = 91/283 (32%), Gaps = 74/283 (26%)
Query: 20 LLIDFLSIPP-DSPNQEDQ--------FALLLSQGLTSSDSTW------------QSSSD 58
LL+ +L P D P + A + GL + D W +SS +
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD-NWKHVNCDKLTTIIESSLN 364
Query: 59 LLPPDDSTRL-INLTNFEFLINPPCLDTVYLVLIHSAPYNYD---------KRRLI-RNT 107
+L P + ++ L+ F + P T+ L LI D K L+ +
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIP---TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 108 WGTRVSVYFFIGETDPSNQTRLDIESETY-HDIVQGRFWDSY---RNLTYKHTM------ 157
+ +S+ + ++ +E+E H D Y + +
Sbjct: 422 KESTISIP------SIYLELKVKLENEYALHR----SIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 158 -VFKWVVYNCPHVKYVFKLDDDVFMNVIQLD-ELLTRTLSPHGTRNLLMCPIVWEKLPVL 215
+ + + H+K + + ++ LD L + + H + + L L
Sbjct: 472 YFYSHIGH---HLKNIEHPERMTLFRMVFLDFRFLEQKIR-HDSTAWNASGSILNTLQQL 527
Query: 216 RTYRSKWRVSFSEYRDHFYPPHCHGNALLYS-PDVVFKLYQHL 257
+ Y+ + L+ + D + K+ ++L
Sbjct: 528 KFYK-----------PYICDNDPKYERLVNAILDFLPKIEENL 559
Score = 29.1 bits (64), Expect = 3.7
Identities = 13/97 (13%), Positives = 27/97 (27%), Gaps = 30/97 (30%)
Query: 33 NQEDQFALL---------LSQGLTSSDSTWQSSSDLLP----------------PDDSTR 67
++ L L Q + + W +S +L P
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544
Query: 68 LINLTNF-----EFLINPPCLDTVYLVLIHSAPYNYD 99
+ + +F E LI D + + L+ ++
Sbjct: 545 VNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase
inhibitor, cyclic pentylation, chemic modification; HET:
LP6; 1.60A {Enterococcus faecalis}
Length = 214
Score = 29.5 bits (66), Expect = 1.4
Identities = 6/60 (10%), Positives = 22/60 (36%), Gaps = 10/60 (16%)
Query: 267 DDVFITGIVFSKLNLTHAKFSWWPGHDEPVVILYSKMDLQH-NLSQYILAKLNLTHAKFS 325
D+ + ++ +++L + + + H +L+ A + ++ +F
Sbjct: 28 DEAILENHLYQQIDLPNQEVR---NLV------FRDAVFDHLSLANGQFASFDCSNVRFE 78
>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras
cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB:
3psz_A
Length = 216
Score = 29.0 bits (65), Expect = 1.9
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 272 TGIVFSKLNLTHAKFSWWPGHDEPVVILYSKMDLQH-NLSQYILAKLNLTHAKFS 325
G FS L+L +F LQ +L + + +LT A S
Sbjct: 28 IGCNFSWLDLAECRFV---DCSFYDRESEQSCLLQGCDLREASFLRCDLTMADCS 79
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 3.7
Identities = 7/20 (35%), Positives = 9/20 (45%), Gaps = 1/20 (5%)
Query: 54 QSSSDLLPPDDSTRL-INLT 72
Q+S L D + L I T
Sbjct: 26 QASLKLYADDSAPALAIKAT 45
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 28.0 bits (63), Expect = 4.2
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 11/54 (20%)
Query: 66 TRLINLTNFEFLINPPCLDTVYLV-LIHSAP-YNYDKR-RLIRNTWGTRVSVYF 116
T+ IN F + P +LV L P Y Y + + W +S Y
Sbjct: 65 TQHINY----FSVGPAAEPVAHLVDL----PGYGYAEVPGAAKAHWEQLLSSYL 110
>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E
ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia
coli} PDB: 3naw_A* 3sqv_A
Length = 613
Score = 27.6 bits (61), Expect = 8.3
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 276 FSKLNLTHAKFS----WWPGHDEPVVILYSKMDLQH-NLSQYILAKLNLTHAKFS 325
+ L+ A+ + W + +++ +LS L LNL+ FS
Sbjct: 2 QGRACLSKAELTADLIWLSANRTGEESA-EELNYSGCDLSGLSLVGLNLSSVNFS 55
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.140 0.457
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,064,892
Number of extensions: 353186
Number of successful extensions: 792
Number of sequences better than 10.0: 1
Number of HSP's gapped: 786
Number of HSP's successfully gapped: 15
Length of query: 381
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 286
Effective length of database: 4,049,298
Effective search space: 1158099228
Effective search space used: 1158099228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.1 bits)