RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14358
         (381 letters)



>d2jn9a1 b.45.3.1 (A:2-97) Uncharacterized protein YkvR {Bacillus
           subtilis [TaxId: 1423]}
          Length = 96

 Score = 25.3 bits (55), Expect = 6.2
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 109 GTRVSVYFFIGETDPSNQTRLD--IESETYHDI 139
              + +  +  E++P  +      + SETYHDI
Sbjct: 8   NVTLEMAAYQEESEPKRKIAFTLNVTSETYHDI 40


>d1m8pa1 b.122.1.3 (A:1-170) ATP sulfurylase N-terminal domain
           {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
          Length = 170

 Score = 26.1 bits (57), Expect = 6.2
 Identities = 14/105 (13%), Positives = 29/105 (27%), Gaps = 12/105 (11%)

Query: 7   LVLIVVGIFLCLCLLIDFLSIPPDSPNQEDQFALLLSQGLTSSDSTWQSSSDLLPPDDST 66
           L LI+ G F  L           +    +  +  +      +  + +     L    +  
Sbjct: 44  LELIMNGGFSPL-----------EGFMNQADYDRVCEDNRLADGNVFSMPITLDASQEVI 92

Query: 67  RLINLTNFEFL-INPPCLDTVYLVLIHSAPYNYDKRRLIRNTWGT 110
               L     + +     D    +L     Y  DK +  +  +G 
Sbjct: 93  DEKKLQAASRITLRDFRDDRNLAILTIDDIYRPDKTKEAKLVFGG 137


>d1a0tp_ f.4.3.2 (P:) Sucrose-specific porin {Enterobacterium
           (Salmonella typhimurium) [TaxId: 90371]}
          Length = 413

 Score = 26.1 bits (57), Expect = 8.2
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 37  QFALLLSQGLTSSDSTWQSSSDLLPPDDSTRLIN 70
           + ALL   GL +      S   L P  D+ R+ +
Sbjct: 238 KTALLYGHGLGAEVKGIGSDGALRPGADTWRIAS 271


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.140    0.457 

Gapped
Lambda     K      H
   0.267   0.0622    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,551,653
Number of extensions: 74112
Number of successful extensions: 242
Number of sequences better than 10.0: 1
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 8
Length of query: 381
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 294
Effective length of database: 1,213,086
Effective search space: 356647284
Effective search space used: 356647284
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.8 bits)